BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia27_contig00036221
         (474 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]   235   4e-69
gb|KYP78025.1| Retrovirus-related Pol polyprotein from transposo...   195   5e-59
emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]   204   2e-58
gb|KYP59043.1| Retrovirus-related Pol polyprotein from transposo...   195   4e-58
emb|CAN67819.1| hypothetical protein VITISV_041315 [Vitis vinifera]   202   1e-57
ref|XP_015388800.1| PREDICTED: uncharacterized protein LOC107178...   201   1e-57
gb|KYP56498.1| Retrovirus-related Pol polyprotein from transposo...   189   3e-57
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]   198   3e-56
gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group...   197   1e-55
emb|CAN68623.1| hypothetical protein VITISV_010681 [Vitis vinifera]   196   1e-55
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|...   195   5e-55
gb|KYP47921.1| Retrovirus-related Pol polyprotein from transposo...   183   1e-54
gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposo...   191   9e-54
gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposo...   191   9e-54
gb|AAP94600.1| putative copia-like retrotransposon Hopscotch pol...   191   1e-53
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop...   191   1e-53
gb|KYP71160.1| Retrovirus-related Pol polyprotein from transposo...   191   1e-53
gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]     191   2e-53
gb|KYP75416.1| Retrovirus-related Pol polyprotein from transposo...   189   3e-53
gb|KYP50444.1| Retrovirus-related Pol polyprotein from transposo...   190   4e-53

>emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]
          Length = 1424

 Score =  235 bits (600), Expect = 4e-69
 Identities = 108/153 (70%), Positives = 123/153 (80%), Gaps = 6/153 (3%)
 Frame = +3

Query: 3    FTEFLTSQGIIHQHPCPYTHEQNGLAERKHRHIVDTGLTLLAQASLPLKYWD------VY 164
            FT++LTS GIIH+  CPYTHEQNGLAERKHRHIV+ G+ LLAQASLP KYWD      VY
Sbjct: 640  FTQYLTSNGIIHRISCPYTHEQNGLAERKHRHIVEHGIALLAQASLPFKYWDEAFRTSVY 699

Query: 165  LINRLPTPLLLNKSPHEILFHSKPQYTSLKTFGCLCYPNLRPYNSHKFSYRTSPCTFLGY 344
            LINRLPTP+L NKSP E+LFH KP Y+ LK FGC+CYPNLRP+N HK  +R+ PCTFLGY
Sbjct: 700  LINRLPTPVLKNKSPLEVLFHQKPSYSXLKVFGCMCYPNLRPFNHHKLQFRSIPCTFLGY 759

Query: 345  NLIHKGYKCLDSTGKIIISRDVTFNESQFPFAQ 443
            +L HKGYKCL   G I+ISRDV F+E  FPFAQ
Sbjct: 760  SLNHKGYKCLSPNGNILISRDVIFDEXAFPFAQ 792


>gb|KYP78025.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 339

 Score =  195 bits (495), Expect = 5e-59
 Identities = 94/163 (57%), Positives = 113/163 (69%), Gaps = 6/163 (3%)
 Frame = +3

Query: 3   FTEFLTSQGIIHQHPCPYTHEQNGLAERKHRHIVDTGLTLLAQASLPLKYWD------VY 164
           FT FL S GI H+  CP+TH QNG  ERKHRHI+D+GLTLL  ASLPLK+WD      VY
Sbjct: 31  FTSFLASHGITHRLICPHTHHQNGTIERKHRHILDSGLTLLHHASLPLKFWDFAFMTVVY 90

Query: 165 LINRLPTPLLLNKSPHEILFHSKPQYTSLKTFGCLCYPNLRPYNSHKFSYRTSPCTFLGY 344
           L NRLP+  L    P+ ILF + P Y  LK+FGC+C+P LRPYN+HK  YR+  C FLGY
Sbjct: 91  LFNRLPSVALNFVVPYTILFKTPPDYDFLKSFGCVCFPLLRPYNTHKLDYRSQECLFLGY 150

Query: 345 NLIHKGYKCLDSTGKIIISRDVTFNESQFPFAQSPPVPSTPSS 473
           +  HKGYKCL +TG+I IS+DV FNE +FP+A   P     SS
Sbjct: 151 SHAHKGYKCLSATGRIYISKDVIFNEQRFPYAHLFPQCHVSSS 193


>emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]
          Length = 1262

 Score =  204 bits (520), Expect = 2e-58
 Identities = 93/149 (62%), Positives = 115/149 (77%), Gaps = 6/149 (4%)
 Frame = +3

Query: 12  FLTSQGIIHQHPCPYTHEQNGLAERKHRHIVDTGLTLLAQASLPLKYWD------VYLIN 173
           +    GIIH+  CP+T +QNG+ ERKHRHIV+ GLTLLAQASLPLKYW       V+LIN
Sbjct: 455 YFEQNGIIHRLSCPHTSKQNGIIERKHRHIVELGLTLLAQASLPLKYWPDAFSTAVFLIN 514

Query: 174 RLPTPLLLNKSPHEILFHSKPQYTSLKTFGCLCYPNLRPYNSHKFSYRTSPCTFLGYNLI 353
           RLPT +L  K P+E LF+SKP Y+ LK FGCLC+P+LRPYN HK  +R+SPCTFLGY+  
Sbjct: 515 RLPTEVLKQKCPYEFLFNSKPNYSQLKVFGCLCFPHLRPYNKHKLDFRSSPCTFLGYSSK 574

Query: 354 HKGYKCLDSTGKIIISRDVTFNESQFPFA 440
           HKGYKCL+  G++ ISR V F+E++FPFA
Sbjct: 575 HKGYKCLNQQGRMFISRSVVFDETRFPFA 603


>gb|KYP59043.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 426

 Score =  195 bits (495), Expect = 4e-58
 Identities = 94/155 (60%), Positives = 107/155 (69%), Gaps = 6/155 (3%)
 Frame = +3

Query: 3   FTEFLTSQGIIHQHPCPYTHEQNGLAERKHRHIVDTGLTLLAQASLPLKYWD------VY 164
           FT++LT  GI H+  CP+THEQNG  ERKHRHI +T LTLLA ASLPL +W         
Sbjct: 97  FTKYLTENGIQHRLSCPHTHEQNGRPERKHRHITETSLTLLANASLPLHFWGEAFLTATT 156

Query: 165 LINRLPTPLLLNKSPHEILFHSKPQYTSLKTFGCLCYPNLRPYNSHKFSYRTSPCTFLGY 344
           LIN LPTP L N SP++ILFH  P Y  LKTFGC CYP LRPYN HK  +++  C FLGY
Sbjct: 157 LINLLPTPSLQNISPYQILFHKPPDYNFLKTFGCGCYPLLRPYNQHKLDFKSHQCLFLGY 216

Query: 345 NLIHKGYKCLDSTGKIIISRDVTFNESQFPFAQSP 449
           +  HKGYKCL  TGK  ISR V FNES FP+  SP
Sbjct: 217 SNQHKGYKCLSPTGKCYISRHVKFNESFFPYKHSP 251


>emb|CAN67819.1| hypothetical protein VITISV_041315 [Vitis vinifera]
          Length = 1242

 Score =  202 bits (515), Expect = 1e-57
 Identities = 92/148 (62%), Positives = 114/148 (77%), Gaps = 6/148 (4%)
 Frame = +3

Query: 12   FLTSQGIIHQHPCPYTHEQNGLAERKHRHIVDTGLTLLAQASLPLKYWD------VYLIN 173
            +    GIIH+  CP+T +QNG+ ERKHRHIV+ GLTLLAQASLPLKYW       V+LIN
Sbjct: 701  YFEQNGIIHRLSCPHTSKQNGIIERKHRHIVELGLTLLAQASLPLKYWPDAFSTXVFLIN 760

Query: 174  RLPTPLLLNKSPHEILFHSKPQYTSLKTFGCLCYPNLRPYNSHKFSYRTSPCTFLGYNLI 353
            RLPT +L  K P+E LF+SKP Y+ LK FGCLC+P+LRPYN HK  +R+SPCTFLGY+  
Sbjct: 761  RLPTEVLKQKCPYEFLFNSKPNYSQLKVFGCLCFPHLRPYNKHKLDFRSSPCTFLGYSSK 820

Query: 354  HKGYKCLDSTGKIIISRDVTFNESQFPF 437
            HKGYKCL+  G++ ISR V F+E++FPF
Sbjct: 821  HKGYKCLNQQGRMFISRSVXFDETKFPF 848


>ref|XP_015388800.1| PREDICTED: uncharacterized protein LOC107178344 [Citrus sinensis]
          Length = 877

 Score =  201 bits (512), Expect = 1e-57
 Identities = 98/162 (60%), Positives = 114/162 (70%), Gaps = 6/162 (3%)
 Frame = +3

Query: 3    FTEFLTSQGIIHQHPCPYTHEQNGLAERKHRHIVDTGLTLLAQASLPLKYW------DVY 164
            F  +L+ QGI  +HPCPY H QN   ERKHRHIV+TGLTLLAQA LPLK+W        Y
Sbjct: 593  FVSYLSEQGIQFRHPCPYIHHQNRKIERKHRHIVETGLTLLAQAHLPLKFWWNAFHTATY 652

Query: 165  LINRLPTPLLLNKSPHEILFHSKPQYTSLKTFGCLCYPNLRPYNSHKFSYRTSPCTFLGY 344
            LINRLPTP+L NKSP E LFH  P YT +K FGC CYP LRPYN HK  +R+  C FLGY
Sbjct: 653  LINRLPTPILNNKSPFEKLFHKLPDYTMMKVFGCSCYPYLRPYNHHKLQFRSERCVFLGY 712

Query: 345  NLIHKGYKCLDSTGKIIISRDVTFNESQFPFAQSPPVPSTPS 470
            + +HKGY+CL  +G++ IS  VTF+ES FPF QS    ST S
Sbjct: 713  SSLHKGYQCLHLSGRVYISNHVTFDESFFPF-QSADKFSTKS 753


>gb|KYP56498.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 297

 Score =  189 bits (480), Expect = 3e-57
 Identities = 92/164 (56%), Positives = 111/164 (67%), Gaps = 11/164 (6%)
 Frame = +3

Query: 3   FTEFLTSQGIIHQHPCPYTHEQNGLAERKHRHIVDTGLTLLAQASLPLKYWD------VY 164
           FT FL + GI H+  CP+TH QNG+ ERKHRHIVD G+TLL  ASLPL +WD      VY
Sbjct: 24  FTAFLATHGITHRLICPHTHHQNGVVERKHRHIVDIGITLLYHASLPLTFWDYVFSTAVY 83

Query: 165 LINRLPTPLLLNKSPHEILFHSKPQYTSLKTFGCLCYPNLRPYNSHKFSYRTSPCTFLGY 344
           LINRLPT  L    P  +LF   P Y  LKTFGC+C+  LRPY +HK  +R+  C FLGY
Sbjct: 84  LINRLPTASLNFDIPFTVLFKQTPDYNFLKTFGCVCFSFLRPYTTHKLDFRSQECVFLGY 143

Query: 345 NLIHKGYKCLDSTGKIIISRDVTFNESQFPFAQ-----SPPVPS 461
           +  HKGYKCL ++GKI IS+DV FNE++FP+       S PVPS
Sbjct: 144 SNSHKGYKCLSASGKIYISKDVIFNETRFPYLDLFQHTSTPVPS 187


>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
          Length = 1455

 Score =  198 bits (504), Expect = 3e-56
 Identities = 92/159 (57%), Positives = 116/159 (72%), Gaps = 6/159 (3%)
 Frame = +3

Query: 3    FTEFLTSQGIIHQHPCPYTHEQNGLAERKHRHIVDTGLTLLAQASLPLKYWD------VY 164
            F  +L   GI+H+  CP+T +QNG+AERKHR IV+ GLTLL  ASLPLK+WD      VY
Sbjct: 657  FQSYLAENGIVHRVSCPHTQQQNGVAERKHRTIVEHGLTLLHTASLPLKFWDESFRTVVY 716

Query: 165  LINRLPTPLLLNKSPHEILFHSKPQYTSLKTFGCLCYPNLRPYNSHKFSYRTSPCTFLGY 344
            L NRLPT +L +K P E+LF S P Y+ LK FGC C+PNLRPYN+HK  YR+  CTFLGY
Sbjct: 717  LSNRLPTAILHHKCPIEVLFKSIPDYSFLKVFGCSCFPNLRPYNTHKLQYRSEECTFLGY 776

Query: 345  NLIHKGYKCLDSTGKIIISRDVTFNESQFPFAQSPPVPS 461
            +L HKGYKC+ S G++ IS DV FNE+ FP++++  V S
Sbjct: 777  SLKHKGYKCMSSNGRVYISHDVIFNETSFPYSKTIQVSS 815


>gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1256

 Score =  197 bits (500), Expect = 1e-55
 Identities = 95/158 (60%), Positives = 115/158 (72%), Gaps = 7/158 (4%)
 Frame = +3

Query: 12  FLTSQGIIHQHPCPYTHEQNGLAERKHRHIVDTGLTLLAQASLPLKYWD------VYLIN 173
           F    GI H   CP+TH+QNG AERKHRHIV+ GL+LLA ASLPLK+WD      VYLIN
Sbjct: 423 FFNKIGITHHVSCPHTHQQNGSAERKHRHIVEVGLSLLAHASLPLKFWDEAYQSGVYLIN 482

Query: 174 RLPTPLLLNKSPHEILFHSKPQYTSLKTFGCLCYPNLRPYNSHKFSYRTSPCTFLGYNLI 353
           R+PT +L   SP E LF   P Y +L+TFGC C+P+LRPYNSHK  +R+  CTFLGY+ +
Sbjct: 483 RMPTKVLGYSSPLECLFKQTPDYQALRTFGCACWPDLRPYNSHKMHFRSKRCTFLGYSPL 542

Query: 354 HKGYKCLD-STGKIIISRDVTFNESQFPFAQSPPVPST 464
           HKG++CLD STG+I ISRDV F+ES FPFA+  P   T
Sbjct: 543 HKGFRCLDSSTGRIYISRDVVFDESVFPFAELNPNAGT 580


>emb|CAN68623.1| hypothetical protein VITISV_010681 [Vitis vinifera]
          Length = 846

 Score =  196 bits (497), Expect = 1e-55
 Identities = 95/166 (57%), Positives = 119/166 (71%), Gaps = 10/166 (6%)
 Frame = +3

Query: 3   FTEFLTSQGIIHQHPCPYTHEQNGLAERKHRHIVDTGLTLLAQASLPLKYWD------VY 164
           F  +L   GI+H+  CP+T +QNG+AERKHR IV+ GLTLL  ASLPLK+WD      VY
Sbjct: 239 FQSYLAENGIVHRVSCPHTQQQNGVAERKHRTIVEHGLTLLHTASLPLKFWDESFRTVVY 298

Query: 165 LINRLPTPLLLNKSPHEILFHSKPQYTSLKTFGCLCYPNLRPYNSHKFSYRTSPCTFLGY 344
           L NRLPT +L +K P E+LF S P Y+ LK FGC C+PNLRPYN+HK  YR+  CTFLGY
Sbjct: 299 LSNRLPTAVLHHKCPIEVLFKSIPDYSFLKVFGCSCFPNLRPYNTHKLQYRSEECTFLGY 358

Query: 345 NLIHKGYKCLDSTGKIIISRDVTFNESQFPFAQ----SPPVPSTPS 470
           +L HKGYKC+ S G++ ISRDV FNE+ F +++    S  +PST S
Sbjct: 359 SLKHKGYKCMFSNGRVYISRDVIFNETSFSYSKTIQASSCLPSTVS 404


>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
            gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1447

 Score =  195 bits (495), Expect = 5e-55
 Identities = 91/151 (60%), Positives = 114/151 (75%), Gaps = 7/151 (4%)
 Frame = +3

Query: 12   FLTSQGIIHQHPCPYTHEQNGLAERKHRHIVDTGLTLLAQASLPLKYWD------VYLIN 173
            F T  GI H   CP+TH+QNG AERKHRHIV+ GLTLLA +S+PLK+WD      VYLIN
Sbjct: 594  FFTKIGITHHVSCPHTHQQNGSAERKHRHIVEVGLTLLAYSSMPLKFWDEAFQAAVYLIN 653

Query: 174  RLPTPLLLNKSPHEILFHSKPQYTSLKTFGCLCYPNLRPYNSHKFSYRTSPCTFLGYNLI 353
            R PT LL   +P E LF+  P Y+SL+ FGC C+P+LRPYN+HK  +R+  CTFLGY+ +
Sbjct: 654  RTPTKLLQFLTPLEHLFNQTPDYSSLRVFGCACWPHLRPYNTHKLQFRSKQCTFLGYSTL 713

Query: 354  HKGYKCLD-STGKIIISRDVTFNESQFPFAQ 443
            HKG+KCLD STG++ ISRDV F+E+ FPFA+
Sbjct: 714  HKGFKCLDPSTGRVYISRDVIFDETNFPFAK 744


>gb|KYP47921.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 330

 Score =  183 bits (465), Expect = 1e-54
 Identities = 89/154 (57%), Positives = 103/154 (66%), Gaps = 6/154 (3%)
 Frame = +3

Query: 3   FTEFLTSQGIIHQHPCPYTHEQNGLAERKHRHIVDTGLTLLAQASLPLKYWD------VY 164
           FT+FL   GI+H   CPY HEQNG AERKH HI   GL++LA AS+PLKYW       V+
Sbjct: 118 FTKFLQEHGILHHISCPYIHEQNGNAERKHTHITKMGLSILAHASMPLKYWGEAFNTVVH 177

Query: 165 LINRLPTPLLLNKSPHEILFHSKPQYTSLKTFGCLCYPNLRPYNSHKFSYRTSPCTFLGY 344
           +INRLPTP L   +  E LF   P Y  LK FG  CYP LRPYN +KF ++TS C FLGY
Sbjct: 178 IINRLPTPTLAFSTLIEKLFSKSPSYNDLKVFGSTCYPFLRPYNKNKFDFKTSECVFLGY 237

Query: 345 NLIHKGYKCLDSTGKIIISRDVTFNESQFPFAQS 446
           N  +KGY CL STG+I ISR V FNE  FPFA +
Sbjct: 238 NSSYKGYMCLSSTGRIYISRHVIFNEFVFPFASN 271


>gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1073

 Score =  191 bits (486), Expect = 9e-54
 Identities = 85/151 (56%), Positives = 110/151 (72%), Gaps = 6/151 (3%)
 Frame = +3

Query: 3   FTEFLTSQGIIHQHPCPYTHEQNGLAERKHRHIVDTGLTLLAQASLPLKYWD------VY 164
           FT +L   GI H+  CP+TH QNG+AERKHRHIV+ GLTL+AQA LP+++WD      VY
Sbjct: 299 FTTYLNEVGIQHRLICPHTHHQNGVAERKHRHIVELGLTLMAQAELPMQFWDHSFLTAVY 358

Query: 165 LINRLPTPLLLNKSPHEILFHSKPQYTSLKTFGCLCYPNLRPYNSHKFSYRTSPCTFLGY 344
           LINRLP+  + N  P+  LFH  P Y SL+ FGC C+P+LRPYN HK  +R+  C FLGY
Sbjct: 359 LINRLPSSSIQNAVPYHKLFHQPPDYLSLRIFGCSCFPHLRPYNKHKLQFRSQECVFLGY 418

Query: 345 NLIHKGYKCLDSTGKIIISRDVTFNESQFPF 437
           +  HKGYKCL + G++ IS+DV FNE++FP+
Sbjct: 419 STSHKGYKCLAADGRLYISKDVVFNETKFPY 449


>gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1408

 Score =  191 bits (486), Expect = 9e-54
 Identities = 85/151 (56%), Positives = 110/151 (72%), Gaps = 6/151 (3%)
 Frame = +3

Query: 3    FTEFLTSQGIIHQHPCPYTHEQNGLAERKHRHIVDTGLTLLAQASLPLKYWD------VY 164
            FT +L   GI H+  CP+TH QNG+AERKHRHIV+ GLTL+AQA LP+++WD      VY
Sbjct: 634  FTTYLNEVGIQHRLICPHTHHQNGVAERKHRHIVELGLTLMAQAELPMQFWDHSFLTAVY 693

Query: 165  LINRLPTPLLLNKSPHEILFHSKPQYTSLKTFGCLCYPNLRPYNSHKFSYRTSPCTFLGY 344
            LINRLP+  + N  P+  LFH  P Y SL+ FGC C+P+LRPYN HK  +R+  C FLGY
Sbjct: 694  LINRLPSSSIQNAVPYHKLFHQPPDYLSLRIFGCSCFPHLRPYNKHKLQFRSQECVFLGY 753

Query: 345  NLIHKGYKCLDSTGKIIISRDVTFNESQFPF 437
            +  HKGYKCL + G++ IS+DV FNE++FP+
Sbjct: 754  STSHKGYKCLAADGRLYISKDVVFNETKFPY 784


>gb|AAP94600.1| putative copia-like retrotransposon Hopscotch polyprotein, partial
           [Zea mays]
          Length = 969

 Score =  191 bits (485), Expect = 1e-53
 Identities = 88/150 (58%), Positives = 111/150 (74%), Gaps = 7/150 (4%)
 Frame = +3

Query: 12  FLTSQGIIHQHPCPYTHEQNGLAERKHRHIVDTGLTLLAQASLPLKYWD------VYLIN 173
           F    GI H   CP+ H+QNG AERKHRHIV+ GL+LLA AS+PLK+WD       YLIN
Sbjct: 441 FFNKIGISHLVSCPHAHQQNGSAERKHRHIVEVGLSLLAHASMPLKFWDEAFLAAAYLIN 500

Query: 174 RLPTPLLLNKSPHEILFHSKPQYTSLKTFGCLCYPNLRPYNSHKFSYRTSPCTFLGYNLI 353
           R PT +L   +P E LFH +P Y+ L+ FGC+C+PNLRPYNSHK  +R+  C FLGY+ +
Sbjct: 501 RTPTKILNLDTPFERLFHKQPDYSVLRIFGCVCWPNLRPYNSHKLQFRSKQCVFLGYSSL 560

Query: 354 HKGYKCLD-STGKIIISRDVTFNESQFPFA 440
           HKG+KCLD STG++ +SRDVTF+E+ FPFA
Sbjct: 561 HKGFKCLDVSTGRVYVSRDVTFDENFFPFA 590


>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea
           mays]
          Length = 1313

 Score =  191 bits (485), Expect = 1e-53
 Identities = 88/150 (58%), Positives = 111/150 (74%), Gaps = 7/150 (4%)
 Frame = +3

Query: 12  FLTSQGIIHQHPCPYTHEQNGLAERKHRHIVDTGLTLLAQASLPLKYWD------VYLIN 173
           F    GI H   CP+ H+QNG AERKHRHIV+ GL+LLA AS+PLK+WD       YLIN
Sbjct: 441 FFNKIGISHLVSCPHAHQQNGSAERKHRHIVEVGLSLLAHASMPLKFWDEAFLAAAYLIN 500

Query: 174 RLPTPLLLNKSPHEILFHSKPQYTSLKTFGCLCYPNLRPYNSHKFSYRTSPCTFLGYNLI 353
           R PT +L   +P E LFH +P Y+ L+ FGC+C+PNLRPYNSHK  +R+  C FLGY+ +
Sbjct: 501 RTPTKILNLDTPFERLFHKQPDYSVLRIFGCVCWPNLRPYNSHKLQFRSKQCVFLGYSSL 560

Query: 354 HKGYKCLD-STGKIIISRDVTFNESQFPFA 440
           HKG+KCLD STG++ +SRDVTF+E+ FPFA
Sbjct: 561 HKGFKCLDVSTGRVYVSRDVTFDENFFPFA 590


>gb|KYP71160.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1268

 Score =  191 bits (485), Expect = 1e-53
 Identities = 93/164 (56%), Positives = 111/164 (67%), Gaps = 11/164 (6%)
 Frame = +3

Query: 3    FTEFLTSQGIIHQHPCPYTHEQNGLAERKHRHIVDTGLTLLAQASLPLKYWD------VY 164
            FT FL + GI H+  CP+TH QNG+ ERKHRHIVD G+TLL  ASLPL +WD      VY
Sbjct: 553  FTAFLATHGITHRLICPHTHHQNGVVERKHRHIVDIGITLLHHASLPLTFWDYAFSTAVY 612

Query: 165  LINRLPTPLLLNKSPHEILFHSKPQYTSLKTFGCLCYPNLRPYNSHKFSYRTSPCTFLGY 344
            LINRLPT  L    P  +LF   P Y  LKTFGC C+P LRPY +HK  +R+  C FLGY
Sbjct: 613  LINRLPTASLNFDIPFTVLFKQTPDYKFLKTFGCACFPFLRPYTTHKLDFRSQECVFLGY 672

Query: 345  NLIHKGYKCLDSTGKIIISRDVTFNESQFPFAQ-----SPPVPS 461
            +  HKGYKCL ++GKI IS+DV FNE++FP+       S PVPS
Sbjct: 673  SNSHKGYKCLSASGKIYISKDVIFNETRFPYLDLFQHTSTPVPS 716


>gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1210

 Score =  191 bits (484), Expect = 2e-53
 Identities = 87/151 (57%), Positives = 112/151 (74%), Gaps = 7/151 (4%)
 Frame = +3

Query: 9    EFLTSQGIIHQHPCPYTHEQNGLAERKHRHIVDTGLTLLAQASLPLKYWD------VYLI 170
            +F T  GI H   CP+TH+QNG AERKHRHIV+ GL+LLA AS+PLK+WD       YLI
Sbjct: 584  DFFTKIGISHHVSCPHTHQQNGSAERKHRHIVEVGLSLLAHASMPLKFWDEAFIAATYLI 643

Query: 171  NRLPTPLLLNKSPHEILFHSKPQYTSLKTFGCLCYPNLRPYNSHKFSYRTSPCTFLGYNL 350
            NR P+ ++  ++P E LFH KP YTSL+ FGC C+PNLRPYN+ K  +R+  C FLGY+ 
Sbjct: 644  NRTPSKVIQYETPLEHLFHQKPSYTSLRVFGCACWPNLRPYNARKLQFRSKQCVFLGYSN 703

Query: 351  IHKGYKCLD-STGKIIISRDVTFNESQFPFA 440
            +HKG+KCLD + G++ ISRDV F+E+ FPFA
Sbjct: 704  LHKGFKCLDVAAGRVYISRDVVFDENVFPFA 734


>gb|KYP75416.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 785

 Score =  189 bits (479), Expect = 3e-53
 Identities = 86/160 (53%), Positives = 110/160 (68%), Gaps = 6/160 (3%)
 Frame = +3

Query: 3    FTEFLTSQGIIHQHPCPYTHEQNGLAERKHRHIVDTGLTLLAQASLPLKYWD------VY 164
            FT +L   GI H+  CP+TH QNG+ ERKHRHIV+ GLT+LAQA LP+++WD      VY
Sbjct: 538  FTSYLAQNGIQHRLICPHTHHQNGVVERKHRHIVELGLTMLAQAHLPMQFWDHAFLTSVY 597

Query: 165  LINRLPTPLLLNKSPHEILFHSKPQYTSLKTFGCLCYPNLRPYNSHKFSYRTSPCTFLGY 344
            LINRLP+  + N  P   LFH  P Y  L+ FGC C+P+LRPYN +K  +R+  C FLGY
Sbjct: 598  LINRLPSSSIQNDVPFRKLFHQLPDYNFLRIFGCSCFPHLRPYNKNKLQFRSQECVFLGY 657

Query: 345  NLIHKGYKCLDSTGKIIISRDVTFNESQFPFAQSPPVPST 464
            +  HKGYKCL  TG+I IS+DV F E++FP+    P P+T
Sbjct: 658  STSHKGYKCLAPTGRIFISKDVVFCETRFPYPSLFPAPAT 697


>gb|KYP50444.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1165

 Score =  190 bits (482), Expect = 4e-53
 Identities = 88/150 (58%), Positives = 108/150 (72%), Gaps = 6/150 (4%)
 Frame = +3

Query: 6   TEFLTSQGIIHQHPCPYTHEQNGLAERKHRHIVDTGLTLLAQASLPLKYW------DVYL 167
           ++ L   GI  +  CPYT  QNG AERKHRH+V++GLTLLAQA +PL YW       V+L
Sbjct: 501 SKVLIKTGIQLRESCPYTSAQNGRAERKHRHVVESGLTLLAQAKMPLHYWWEAFSTAVFL 560

Query: 168 INRLPTPLLLNKSPHEILFHSKPQYTSLKTFGCLCYPNLRPYNSHKFSYRTSPCTFLGYN 347
           INRLPT ++ NKSP++ LF   P YT++KTFGC CYP L+PYN HK  + T+ C FLGY+
Sbjct: 561 INRLPTQVIKNKSPYQQLFDKNPDYTAMKTFGCACYPCLKPYNQHKLQFHTTKCVFLGYS 620

Query: 348 LIHKGYKCLDSTGKIIISRDVTFNESQFPF 437
             HKGYKCL+STG+I ISR V FNE  FPF
Sbjct: 621 GSHKGYKCLNSTGRIFISRHVVFNEHHFPF 650