BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia27_contig00035891
         (4508 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP42321.1| Copia protein [Cajanus cajan]                          997   0.0  
gb|KYP34293.1| Retrovirus-related Pol polyprotein from transposo...   997   0.0  
dbj|BAB10503.1| retroelement pol polyprotein-like [Arabidopsis t...   992   0.0  
gb|KYP39497.1| Retrovirus-related Pol polyprotein from transposo...   979   0.0  
gb|KYP61022.1| Retrovirus-related Pol polyprotein from transposo...   967   0.0  
gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsi...   929   0.0  
gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsi...   927   0.0  
gb|KYP70921.1| Retrovirus-related Pol polyprotein from transposo...   886   0.0  
emb|CAN63908.1| hypothetical protein VITISV_044218 [Vitis vinifera]   863   0.0  
gb|AAF79879.1|AC000348_32 T7N9.5 [Arabidopsis thaliana]               869   0.0  
gb|KYP65734.1| Retrovirus-related Pol polyprotein from transposo...   853   0.0  
gb|KYP55668.1| Retrovirus-related Pol polyprotein from transposo...   853   0.0  
emb|CAN82526.1| hypothetical protein VITISV_028058 [Vitis vinifera]   833   0.0  
gb|KYP34298.1| Retrovirus-related Pol polyprotein from transposo...   822   0.0  
gb|KYP37906.1| Retrovirus-related Pol polyprotein from transposo...   820   0.0  
gb|KYP36109.1| Retrovirus-related Pol polyprotein from transposo...   811   0.0  
gb|KHN01991.1| Retrovirus-related Pol polyprotein from transposo...   812   0.0  
gb|KOM38790.1| hypothetical protein LR48_Vigan03g217200 [Vigna a...   751   0.0  
emb|CAN71267.1| hypothetical protein VITISV_017889 [Vitis vinifera]   706   0.0  
gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 proteas...   671   0.0  

>gb|KYP42321.1| Copia protein [Cajanus cajan]
          Length = 1456

 Score =  997 bits (2578), Expect = 0.0
 Identities = 576/1479 (38%), Positives = 832/1479 (56%), Gaps = 79/1479 (5%)
 Frame = -3

Query: 4254 MMIALGAKTKLGFVNGTVTMPKSDSPEYDSWKRVDLMVTSWILNSISKEIVDAFLYVKSA 4075
            M+ AL +K K  F++G++  P +  P   +W+R +  V SW++ S++  I  + LY+ +A
Sbjct: 1    MLTALESKNKEQFIDGSLPSPPTSDPLRSTWRRCNKTVMSWLIRSMTPSIAQSVLYMDTA 60

Query: 4074 HELCEDIAQRFGECNGTVLYQLQKEISTLTQGNATVAVYFTKLKKLWDEYSSLEPLPVCK 3895
             E+ +D+ +RF   +   +  LQ  +    QG++TV+ Y+T LK LW +      + +C 
Sbjct: 61   AEIWKDLCERFSHGDKFRISDLQASVHECKQGDSTVSQYYTHLKTLWKQLEQYRSVLICS 120

Query: 3894 CGAD-------KILAEKELNRRLMQFLMGLNDTYDHIRSQILIMDPLPSVNRAYSMIQRV 3736
            C          KI  E+E +  +++FL GLN+ Y  +RS IL+MDP+PS+ + +S+IQ+ 
Sbjct: 121  CDNPCSCGILLKIKKERE-DDCVIKFLRGLNEEYSQVRSNILMMDPMPSITKTFSLIQQH 179

Query: 3735 EKQ-RDVQVNFPHTMDT--AALL--AKLPHXXXXXXXXXXXXGSNWQXXXXXXXXXREEK 3571
            E++     +  P T  T  AAL   +  P             G +              +
Sbjct: 180  EREIGGTSLLSPSTDSTSFAALTDASMKPSSFERGGSSNNRGGGSSNNRGGGRFGRGNGR 239

Query: 3570 AKLTCEHCKMTGHEITECFKLHGYPEWFKQPREQRGRGVANFVGTPADSNMTVDISGKGG 3391
                C  CK T H I  CF+++GYP  ++   +      A    T  DS    D + +  
Sbjct: 240  GNRFCAKCKKTNHTIDSCFEIYGYPAGYRNRDKSNSTSKAFANLTTVDS----DTASRSA 295

Query: 3390 SAGDMSTLIQQEIAKFMATHASKPLTEKTEIMNMDFAHFVDYAGSNISSDTYCALSTFDH 3211
            +  + S   Q  ++K    HA   L ++    N D  H V++   N  + +    + F  
Sbjct: 296  TPEESSNQTQFTLSKEQY-HAFLALIQQ----NKDVPHSVNHVQQNPKNSS--PGTPFSS 348

Query: 3210 SVKDCWIIDTGASRHMCYNKSLLTNLVPLPSSTIIFLPDGSTKQVTHSGQVTLSSSLTLY 3031
            S+   W++D+GA+ H+C ++ L  +L P+   +I  LP+ +T     SG V L   L L 
Sbjct: 349  SL---WVLDSGATDHICPSQHLFDSLNPIKPISIS-LPNHTTVLAKLSGTVRLGD-LVLP 403

Query: 3030 DVLLVPSFTYNLLSVAQLTHNSHLKFVFYASHCVLQDQRTEEVVAVGKAHGRLYILQPFS 2851
            +   VP F  +L+S+ +LT +  L  +F  ++C +  + T + + V K    L+ L    
Sbjct: 404  NTFYVPHFAMHLISIPRLTSSDCL-ILFCDTNCHIVQKSTSKTIGVAKKKQGLFYLLNSV 462

Query: 2850 THNSSSGFT---------CASTSN-------FHSLSCNNVLLE---WHSKLGHPSVSVLE 2728
             H+ ++            C ST N       + +   NN L +   WHSKLGH    V++
Sbjct: 463  EHDLTASTLLDIHPFFNQCFSTINNTVHDTLYKNAINNNTLNDSMLWHSKLGHVPNKVMQ 522

Query: 2727 HIPCLQPFYNPSMKHIFDDCEICHKSKQPRLSFPLSTTRSGSCFDLIHVDVWGPYAKFNV 2548
             I C Q    P   H F+ C++CH SKQ  LSF  S T S   F+LIHVD+WGP    + 
Sbjct: 523  QI-CSQNSAIPF--HKFEVCDVCHYSKQKNLSFSNSHTTSSRFFELIHVDIWGPLNVSSF 579

Query: 2547 SNTPYMLTLVDDYSRATWTYFLAHKSQVVSILESFFLMINTQFDKKVKVVRSDNGSEFVN 2368
                Y LT+VDDYSR TWT+ L  KS+V +IL SF  +I  QFD  +K +RSDNG EF  
Sbjct: 580  QGYKYFLTVVDDYSRFTWTHLLKTKSEVKAILPSFITLIEKQFDVHLKRLRSDNGKEFYL 639

Query: 2367 HSCQALFHSLGIVHQKSCVYTPQQNGVVERKHRTLLNLGRALMFQSGVPMKFWVHSLMTA 2188
            H     F + GI+H+ SCV  PQQNG+VERKH+ +LN+ RAL+FQ+ +P +FW  ++  A
Sbjct: 640  HD---FFQNKGILHETSCVERPQQNGIVERKHQHILNVCRALLFQAKLPKQFWSFAVKQA 696

Query: 2187 TYLVNRLPSVVLGWQTPYELLYGKPPDYSTIKPFGCLAFATNVSPHKHKFEARAHRCLFV 2008
            T+++NRLP+ +L  ++P+E++Y   PD + +K FGCLAFAT +S  + K + RA +C+F+
Sbjct: 697  THIINRLPTPLLSQKSPFEMIYNCKPDLTELKVFGCLAFATTLSSKRTKLDRRASKCIFL 756

Query: 2007 GYCPGSKGYRLFDMDSNQFLISRDVHFIETTFPFLQHTATKSPTPLPLVPVTEDQFXXXX 1828
            GY  G+KG+ LF++ +  FLISRDV F E  FP+  H  + S +   L+ V +D      
Sbjct: 757  GYKNGTKGFLLFNLHNKSFLISRDVLFYEKIFPYSAHVPSMSASDSLLLDVVKDNDTTIY 816

Query: 1827 XXXXXXXXXXXXXXXSTRLLKPPSWLNDYVT--------NTCTDSLPTTTITPPVL---- 1684
                                  PS      T        NTC   +PT T++ P L    
Sbjct: 817  SDPFPTTTFSHGSPSIPLDTPLPSSETTISTDRPPFSPINTC--PIPTATLSTPELPSSN 874

Query: 1683 -----------------------------------STPGSSSTISTLPSFVS-PPLSSTY 1612
                                               S+  +S+ +  L SFV+    S ++
Sbjct: 875  TTNDASQVVMPQTRVSTRIRKPPRYLQEYYCENLASSSAASNCLYPLSSFVTYNNCSPSH 934

Query: 1611 VSFLANITNQQEPRSFTQASKDVNWVRAMHKELEALEKNGTWELTALPQGKKAIGSKWVY 1432
             SF  +I+ Q EP SF +A+ +  W RAM  EL+ALEKN TW L  LP+GK+ +G KWVY
Sbjct: 935  TSFCLSISAQHEPTSFKEANSEECWRRAMEAELQALEKNQTWSLVRLPEGKRPVGCKWVY 994

Query: 1431 KLKLLPDGSIDRYKARLVAKGYHQVYGLDYLDNFSPVARLVTVRMLIAVATMKGWDLEQL 1252
            ++K   DGS++RYKARLVAKG+ Q  G+DY + FSPV +L TVR L+++A    W L QL
Sbjct: 995  RVKYKVDGSVERYKARLVAKGFTQTEGVDYFETFSPVVKLSTVRFLLSLAAAHNWFLHQL 1054

Query: 1251 DINNAFLHGYLNEDIYMTPPEGYSKAKPGQVCHLKRSLYGLKQASRQWNLEFCQKLVAYG 1072
            D++NAFLHG L E++YM PP G+  + P  VC L +SLYGLKQASRQWN +  + L++  
Sbjct: 1055 DVDNAFLHGDLFEEVYMKPPPGFKLSHPRLVCKLHKSLYGLKQASRQWNQKLTEALISLN 1114

Query: 1071 MVQSQHDHCLFIKASQSSFLALIIYVDDVLVTGSNSHDIAALKTYLDDMFTIKDLGPAKY 892
             +QS  DH LFIK S SS  AL++YVDDV++TG++  +I+A+K YL   F IKDLGP K+
Sbjct: 1115 FIQSSTDHSLFIKKSHSSITALLVYVDDVVLTGNDMAEISAVKAYLHAQFHIKDLGPLKF 1174

Query: 891  FLGLEIVRSMEGTYLNQRKYILDILSDVGLTDCKPAPLPFPQGLKLVAQAGEPFSDPDQY 712
            FLGLEI RS  G  LNQRKY L++LS+ GLTDCKP   P    +KL A  G P  DP  +
Sbjct: 1175 FLGLEIARSQSGLILNQRKYCLELLSEHGLTDCKPVSTPIDASVKLYASEGLPLDDPTIF 1234

Query: 711  RRLVGRLLYLNLTRADITYCVQQLSQFVNSPHTSHWDAAIHVLRYLKGCPSTGLFYPADA 532
            RRL+GRLLYL  TR DI++ VQQLSQFV+SP  +H+ AA+ +LRYLK  P+ GLFYP+  
Sbjct: 1235 RRLIGRLLYLTNTRPDISFAVQQLSQFVDSPRATHFQAALRILRYLKSSPALGLFYPSQT 1294

Query: 531  SFDFRAFSDADWASCGDTRRSLTGFCVFFGGSLVXXXXXXXXXXXXXTAEAEYRAMSTTV 352
                +AFSD+DWASC +TRRS+TGFC+F+G +L+             ++EAEYRA+++  
Sbjct: 1295 EHRIQAFSDSDWASCPNTRRSVTGFCIFYGSALISWKSKKQSTVSRSSSEAEYRALASVT 1354

Query: 351  CELQWLSYLARDLQLPIPTPIPLFCDNQAALHIVANPVFHERTKHLDIDCHLVRNQYKSG 172
            CELQWL +L  DL + IPTP  +FCD+Q+A++I  NP FHERTKH+++DCHL R + + G
Sbjct: 1355 CELQWLLFLCHDLSINIPTPFSIFCDSQSAIYIAKNPTFHERTKHIEVDCHLTRLKIQQG 1414

Query: 171  FVLPQKVGSLDQLADLFTKPLGKQLFRSFVVKLGMKDFH 55
             +    V S  QLAD+FTK L  + F   V KL + D +
Sbjct: 1415 LIHLFHVPSKSQLADVFTKALYPRNFTEAVSKLCLIDIY 1453


>gb|KYP34293.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1376

 Score =  997 bits (2577), Expect = 0.0
 Identities = 566/1463 (38%), Positives = 817/1463 (55%), Gaps = 44/1463 (3%)
 Frame = -3

Query: 4311 MLLVSNQLTGNNYLSWSRSMMIALGAKTKLGFVNGTVTMPKSDSPEYDSWKRVDLMVTSW 4132
            M LVS  L   NY SWSRSM+ AL AK K+ FV+G+   P S    Y +WKR + MV SW
Sbjct: 1    MALVSPSLDSTNYHSWSRSMLTALSAKNKVEFVDGSAPQPPSSDRIYSAWKRCNNMVVSW 60

Query: 4131 ILNSISKEIVDAFLYVKSAHELCEDIAQRFGECNGTVLYQLQKEISTLTQGNATVAVYFT 3952
            ++ S+S  I  + L++ SA E+  D+  R+ + +   +  LQ E S++ QG+ +V  YFT
Sbjct: 61   LVPSVSFSIRQSILWMDSAEEIWRDLKSRYSQGDLLRISALQLEASSIKQGDLSVTDYFT 120

Query: 3951 KLKKLWDEYSSLEPLPVCKC------GADKILAEKELNRRLMQFLMGLNDTYDHIRSQIL 3790
            +L+ +WDE  +  P P+C C          ILA+++L  + MQFL GLND Y ++RS +L
Sbjct: 121  QLRIIWDELENFRPDPICVCIVKCICKVSSILAQRKLEDQAMQFLRGLNDQYANVRSHVL 180

Query: 3789 IMDPLPSVNRAYSMIQRVEKQRDVQVNFPHTMDTAALLAKLPHXXXXXXXXXXXXGSNWQ 3610
            +MDPLP +N+ +S + + E+Q  V  +     +  A  A +                   
Sbjct: 181  LMDPLPPINKIFSYVAQQERQFAVSDSLAEVKNGFANAAIM------------------- 221

Query: 3609 XXXXXXXXXREEKAKLTCEHCKMTGHEITECFKLHGYPEWFKQPREQRGRGVANFVGTPA 3430
                            TC  C   GH  + C++ HG+P+   +    RG+  ++      
Sbjct: 222  --------------NSTCNFCGRNGHTESTCYRKHGFPDKNGKSSSNRGKACSH------ 261

Query: 3429 DSNMTVDISGKGGSAGDMSTLIQQEIAKFMATHASKPLTEKTEIMNMDFAHFVDYAGSNI 3250
                     GK G   D               H   P           F++    + ++ 
Sbjct: 262  --------CGKNGHTVDTC----------YKKHGFPP--------GHRFSNNKSASANSS 295

Query: 3249 SSDTYCALSTFDHSVKDCWIIDTGASRHMCYNKSLLTNLVPLPSSTIIFLPDGSTKQVTH 3070
                 C   +FD +    WIID+GA+ H+  +    T+   L    I+ LP G     TH
Sbjct: 296  VQPHICTTHSFDTTP---WIIDSGATDHVTCSLQFFTSY-KLIEPVIVNLPTGHKVTATH 351

Query: 3069 SGQVTLSSSLTLYDVLLVPSFTYNLLSVAQLTHNSHLKFVFYASHCVLQDQRTEEVVAVG 2890
            SG V  SS+  L DVL + SF +NL+SV++L   +  +  F  + C +QD RT+  +   
Sbjct: 352  SGTVYFSSNFQLTDVLYISSFAFNLISVSKLVSTTSYQITFTNNVCFIQDIRTKMKIGSV 411

Query: 2889 KAHGRLYILQPFSTHNSSSGFTCASTSNFHSLSCNNVLLE-WHSKLGHPSVSVLEHIPCL 2713
               G LY L P   H+    F     S      C+ + ++ WH +LGH S + L ++  L
Sbjct: 412  DVRGGLYQLIP---HHFKPPFI---HSTIIHPKCDVIPIDLWHFRLGHLSNTRLHNMQQL 465

Query: 2712 QPFYNPSMKHIFDDCEICHKSKQPRLSFPLSTTRSGSCFDLIHVDVWGPYAKFN-VSNTP 2536
             P    +       C ICH +KQ +LSF  S + +   F L+H+D+WGPY+  + +    
Sbjct: 466  YPCLTINKDFT---CNICHYAKQRKLSFSSSHSTASRPFSLLHMDIWGPYSCISSIHGHK 522

Query: 2535 YMLTLVDDYSRATWTYFLAHKSQVVSILESFFLMINTQFDKKVKVVRSDNGSEFVNHSCQ 2356
            +  T+VDD +  TW + + +KS+    + +F  +I  QF+ +++ +++DNG+EF+    Q
Sbjct: 523  FFFTIVDDNTHFTWIFLMINKSETRMHISNFINLIENQFNTRIQTIQTDNGAEFL---MQ 579

Query: 2355 ALFHSLGIVHQKSCVYTPQQNGVVERKHRTLLNLGRALMFQSGVPMKFWVHSLMTATYLV 2176
              F+S GIVHQ +C+ TPQQNGVVERKH+ LLN+  AL+F S +P  FW ++L+ ATYL+
Sbjct: 580  NFFNSKGIVHQTTCIETPQQNGVVERKHQHLLNVTHALLFHSKLPYCFWSYALLHATYLI 639

Query: 2175 NRLPSVVLGWQTPYELLYGKPPDYSTIKPFGCLAFATNVSPHKHKFEARAHRCLFVGYCP 1996
            NR+ + +L  +TP++ LYG+  D + ++ FGCL + +  + ++ K + RAH C+F+G+ P
Sbjct: 640  NRITTPLLDNKTPFQKLYGQTCDITELRVFGCLCYVSTSTANRKKLDPRAHPCVFLGFSP 699

Query: 1995 GSKGYRLFDMDSNQFLISRDVHFIETTFPFLQHTATKSPTPL-------------PLVPV 1855
             +KGY  +D+ +    ISR+V F E  FP LQ T++ S  P+              L+ +
Sbjct: 700  TTKGYITYDLHTRAITISRNVSFYENHFPLLQSTSSTSNIPVVSPISFGIHSPSHDLISI 759

Query: 1854 TED-------------------QFXXXXXXXXXXXXXXXXXXXSTRLLKPPSWLNDY--- 1741
              D                                        STRL  PPS+L DY   
Sbjct: 760  LPDPHQHNVTSPNPATTSHDSISLAPYSTTADSLPPNSSPLRRSTRLRNPPSYLQDYHHS 819

Query: 1740 VTNTCTDSLPTTTITPPVLSTPGSSSTISTLPSFVS-PPLSSTYVSFLANITNQQEPRSF 1564
            +T+T T+  P                 +  +  ++S   LS+ + +F+++I+   EP S+
Sbjct: 820  LTSTSTNLHP---------------GMLYPIEKYISYSRLSNDFQAFVSSISAVSEPHSY 864

Query: 1563 TQASKDVNWVRAMHKELEALEKNGTWELTALPQGKKAIGSKWVYKLKLLPDGSIDRYKAR 1384
             +A+K   W++AMH ELEAL+ N TW LT LP  K+A+G +W+YK+K   DGSI+RYKAR
Sbjct: 865  AEAAKHDCWLKAMHAELEALKMNQTWTLTPLPPHKQAVGCRWIYKIKYNADGSIERYKAR 924

Query: 1383 LVAKGYHQVYGLDYLDNFSPVARLVTVRMLIAVATMKGWDLEQLDINNAFLHGYLNEDIY 1204
            LVAKGY QV GLDYL  FSPVA+L TVR+L+A+A +  W L+QLD+NNAFLHG LNE++Y
Sbjct: 925  LVAKGYTQVEGLDYLATFSPVAKLTTVRLLLALAAVFDWHLKQLDVNNAFLHGDLNEEVY 984

Query: 1203 MTPPEGYSKAKPGQVCHLKRSLYGLKQASRQWNLEFCQKLVAYGMVQSQHDHCLFIKASQ 1024
            MT P G       QVC L++SLYGLKQASRQW  +    L+ +G  QS  DH LF+K S 
Sbjct: 985  MTLPLGMRPEYSNQVCKLQKSLYGLKQASRQWFAKLSSFLIHHGYHQSASDHSLFMKFSS 1044

Query: 1023 SSFLALIIYVDDVLVTGSNSHDIAALKTYLDDMFTIKDLGPAKYFLGLEIVRSMEGTYLN 844
            SS  AL+IYVDD+++ G+N  +I  +   LD  F IKDLG  KYFLGLE+ R+  G +L+
Sbjct: 1045 SSTTALLIYVDDIVLAGNNLSEIQLITGLLDVAFKIKDLGNLKYFLGLEVARNKSGIHLS 1104

Query: 843  QRKYILDILSDVGLTDCKPAPLPFPQGLKLVAQAGEPFSDPDQYRRLVGRLLYLNLTRAD 664
            QRKY+LDILSD G+   +P   P     +L A +G P +DP  YRRL+GRL+YL  TR D
Sbjct: 1105 QRKYVLDILSDCGMMASRPVSTPMDYTSRLSASSGTPLADPSSYRRLLGRLIYLTTTRPD 1164

Query: 663  ITYCVQQLSQFVNSPHTSHWDAAIHVLRYLKGCPSTGLFYPADASFDFRAFSDADWASCG 484
            I+Y V  LSQF+++P T+H  A   +LRYLK  P +GLF+P ++S   +AFSD+DWA C 
Sbjct: 1165 ISYVVHHLSQFMSAPSTAHSQAIFRILRYLKQAPGSGLFFPTNSSLHLKAFSDSDWAGCL 1224

Query: 483  DTRRSLTGFCVFFGGSLVXXXXXXXXXXXXXTAEAEYRAMSTTVCELQWLSYLARDLQLP 304
            DTRRS+TGF V+ G SL+             ++EAEYRA++TT  ELQWL+YL  DL +P
Sbjct: 1225 DTRRSITGFSVYLGDSLISWRSKKQPTVSRSSSEAEYRALATTTSELQWLTYLLHDLHVP 1284

Query: 303  IPTPIPLFCDNQAALHIVANPVFHERTKHLDIDCHLVRNQYKSGFVLPQKVGSLDQLADL 124
            +  P  L+CDNQ+ALHI AN VFHERTKH+DIDCHLVR + +SG +    V S  QLAD+
Sbjct: 1285 VHQPALLYCDNQSALHIAANQVFHERTKHIDIDCHLVREKLQSGLLKLLPVASPHQLADI 1344

Query: 123  FTKPLGKQLFRSFVVKLGMKDFH 55
            FTK L   +F +   KLGM + +
Sbjct: 1345 FTKSLSPSMFTALYSKLGMLNLY 1367


>dbj|BAB10503.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1475

 Score =  992 bits (2565), Expect = 0.0
 Identities = 570/1455 (39%), Positives = 809/1455 (55%), Gaps = 29/1455 (1%)
 Frame = -3

Query: 4344 PLQLHGSDHPGMLLVSNQLTGNNYLSWSRSMMIALGAKTKLGFVNGTVTMPKSDSPEYDS 4165
            P  L   D PG  LVS  L G N+ SW  +M ++L AK K+ FV+GT+  P    P +  
Sbjct: 63   PFALSNGDSPGNTLVSEVLDGTNFSSWKIAMFVSLYAKNKIAFVDGTLPRPPESDPSFRV 122

Query: 4164 WKRVDLMVTSWILNSISKEIVDAFLYVKSAHELCEDIAQRFGECNGTVLYQLQKEISTLT 3985
            W R + MV SWILNS++K+I  + L    A E+ +D+  RF   N    YQL ++I +L 
Sbjct: 123  WSRCNSMVKSWILNSVTKQIYKSILRFNDAAEIWKDLDTRFHITNLPRSYQLTQQIWSLQ 182

Query: 3984 QGNATVAVYFTKLKKLWDEYSSLEPLPVCK-CGADKILAEKELNRRLMQFLMGLNDTYDH 3808
            QG  +++ Y+T LK LWD+      +  CK C      A    + ++++FL GLN++Y  
Sbjct: 183  QGTMSLSDYYTALKTLWDDLDGASCVSTCKNCTCCIATASMIEHSKIVKFLSGLNESYST 242

Query: 3807 IRSQILIMDPLPSVNRAYSMIQRVEKQRDVQVNFPHTMDTAALLAKLPHXXXXXXXXXXX 3628
            IRSQI++   +P +   Y+++ +   QR++ V  P    T  + A               
Sbjct: 243  IRSQIIMKKTIPDLAEIYNLLDQDHSQRNI-VTMPTNASTFNVSAP-------------- 287

Query: 3627 XGSNWQXXXXXXXXXREEKAKLTCEHCKMTGHEITECFKLHGYPEWFKQ-------PREQ 3469
              S+            + K K+ C HC  TGH    C+K+HGYP  FK        P E+
Sbjct: 288  -QSDQFAVNLAKSFGTQPKPKVQCSHCGYTGHNADTCYKIHGYPVGFKHKDKKTVTPSEK 346

Query: 3468 RGRGVANFVGTPADSNMTVDISGKG--GSAGDMSTLIQQEIAKFMAT---HASKPLTEKT 3304
                VAN   T    ++T  I   G     G MS    Q++  + +T   + +KP+T  +
Sbjct: 347  PKSVVANLALTDGKVSVTQGIGPDGIVELVGSMSKSQIQDVIAYFSTQLHNPAKPITVAS 406

Query: 3303 EIMNMDFAHFVDYAGSNISSDTYCALSTFDHSVK----DCWIIDTGASRHMCYNKSLLTN 3136
               + +  +   + G + S  T   L +   S K    + WIID+GA+ H+ Y+++L  +
Sbjct: 407  -FASTNNDNGSTFTGISFSPSTLRLLCSLTSSKKVLSLNTWIIDSGATHHVSYDRNLFES 465

Query: 3135 LVPLPSSTIIFLPDGSTKQVTHSGQVTLSSSLTLYDVLLVPSFTYNLLSVAQLTHNSHLK 2956
            L    S+ +  LP GS  ++   G + L+S+LTL +VL +P F  NLLSV+Q T +   K
Sbjct: 466  LSDGLSNEVT-LPTGSNVKIAGIGVIKLNSNLTLKNVLYIPEFRLNLLSVSQQTKDMKCK 524

Query: 2955 FVFYASHCVLQDQRTEEVVAVGKAHGRLYILQPFSTHNSSSGFTCASTSNFHSLSCNNVL 2776
              F    CV+QD   E+ +  G   G LY+L   S   +S     + T   +   CN V+
Sbjct: 525  IYFDEDCCVIQDPIKEQKIGRGNQIGGLYVLDTSSVECTSVDINSSVTEKQY---CNAVV 581

Query: 2775 LE--WHSKLGHPSVS---VLEHIPCLQPFYNPSMKHIFDDCEICHKSKQPRLSFPLSTTR 2611
                WHS+LGHPS     VL  +  L       + H    C IC K+KQ  LSFP     
Sbjct: 582  DSALWHSRLGHPSYEKNDVLHDVLGLPKRNKEDLVH----CSICQKAKQKHLSFPSKNNM 637

Query: 2610 SGSCFDLIHVDVWGPYAKFNVSNTPYMLTLVDDYSRATWTYFLAHKSQVVSILESFFLMI 2431
            S + FDLIH+D WGP+A        Y LT+VDDYSRATW Y +  K+ V+ I   F  M+
Sbjct: 638  SENKFDLIHIDTWGPFATPTTEGYKYFLTIVDDYSRATWVYLMKAKNDVLQIFPDFLKMV 697

Query: 2430 NTQFDKKVKVVRSDNGSEFVNHSCQALFHSLGIVHQKSCVYTPQQNGVVERKHRTLLNLG 2251
             TQ+   VK VRSDN  E      +AL+ + GI+   SC  TPQQN VVERKH+ +LN+ 
Sbjct: 698  ETQYGTLVKAVRSDNAPEL---RFEALYQAKGIISYHSCPETPQQNSVVERKHQHILNVA 754

Query: 2250 RALMFQSGVPMKFWVHSLMTATYLVNRLPSVVLGWQTPYELLYGKPPDYSTIKPFGCLAF 2071
            RALMF++ +P++FW   +++A +L+NRLP+ +L  ++P+ELL+ K PDY+++K FGCL +
Sbjct: 755  RALMFEANMPLEFWGDCILSAVFLINRLPTPLLSNKSPFELLHLKVPDYTSLKVFGCLCY 814

Query: 2070 ATNVSPHKHKFEARAHRCLFVGYCPGSKGYRLFDMDSNQFLISRDVHFIETTFPFLQHTA 1891
             +     +HKF  RA  C+F+GY  G KGY+L D+++N   ISR V F ET FPF   T 
Sbjct: 815  ESTSPQQRHKFAPRARACVFLGYPSGYKGYKLLDLETNTIHISRHVVFYETVFPFTDKTI 874

Query: 1890 TKSPTPLPLVPVTEDQFXXXXXXXXXXXXXXXXXXXSTRLLKPPSWLNDYVTNTCTDSLP 1711
                    + PV E+                     S R  +PP +L DY  N   D   
Sbjct: 875  IPRDVFDLVDPVHEN------IENPPSTSESAPKVSSKRESRPPGYLQDYFCNAVPDV-- 926

Query: 1710 TTTITPPVLSTPGSSSTISTLPSFVS-PPLSSTYVSFLANITNQQEPRSFTQASKDVNWV 1534
            T  +  P             L ++++   LS  + +++  +    EP ++ QA K   W+
Sbjct: 927  TKDVRYP-------------LNAYINYTQLSEEFTAYICAVNKYPEPCTYAQAKKIKEWL 973

Query: 1533 RAMHKELEALEKNGTWELTALPQGKKAIGSKWVYKLKLLPDGSIDRYKARLVAKGYHQVY 1354
             AM  E++ALE   TW + +LPQGKK IG KWV+K+KL  DGS++R+KARLVAKGY Q  
Sbjct: 974  DAMEIEIDALESTNTWSVCSLPQGKKPIGCKWVFKVKLNADGSLERFKARLVAKGYTQRE 1033

Query: 1353 GLDYLDNFSPVARLVTVRMLIAVATMKGWDLEQLDINNAFLHGYLNEDIYMTPPEGYSKA 1174
            GLDY D FSPVA++ TV+ L++VA +K W L QLDI+NAFL+G L E+IYMT P GYS  
Sbjct: 1034 GLDYYDTFSPVAKMTTVKTLLSVAAIKEWSLHQLDISNAFLNGDLKEEIYMTLPPGYSMK 1093

Query: 1173 KPG-----QVCHLKRSLYGLKQASRQWNLEFCQKLVAYGMVQSQHDHCLFIKASQSSFLA 1009
            + G      V  L++SLYGLKQASRQW L+F   L   G  +S  DH LF + S  +++A
Sbjct: 1094 QGGVLPQNPVLKLQKSLYGLKQASRQWYLKFSSTLKKLGFKKSHADHTLFTRISGKAYIA 1153

Query: 1008 LIIYVDDVLVTGSNSHDIAALKTYLDDMFTIKDLGPAKYFLGLEIVRSMEGTYLNQRKYI 829
            L++YVDD+++ G+N  +I  LK  L   F ++DLGP KYFLGLEI R+ EG  + QRKY 
Sbjct: 1154 LLVYVDDIVIAGNNDENIEELKKDLAKAFKLRDLGPMKYFLGLEIARTKEGISVCQRKYT 1213

Query: 828  LDILSDVGLTDCKPAPLPFPQGLKLVAQAGEPFSD-PDQYRRLVGRLLYLNLTRADITYC 652
            +++L D GL  C+P+ +P    LKL     E   D P+ YRRLVG+L+YL +TR DITY 
Sbjct: 1214 MELLEDTGLLGCRPSTIPMEPSLKLSQHNDEHVIDNPEVYRRLVGKLMYLTITRPDITYA 1273

Query: 651  VQQLSQFVNSPHTSHWDAAIHVLRYLKGCPSTGLFYPADASFDFRAFSDADWASCGDTRR 472
            + +L QF +SP  SH  AA  V+ YLKG    GLFY + +    +A++DADW SC D+RR
Sbjct: 1274 INRLCQFSSSPKNSHLKAAQKVVHYLKGTIGLGLFYSSKSDLCLKAYTDADWGSCVDSRR 1333

Query: 471  SLTGFCVFFGGSLVXXXXXXXXXXXXXTAEAEYRAMSTTVCELQWLSYLARDLQLPIPTP 292
            S +G C+F G SL+             +AE+EYRAM+    E+ WL  L  + Q+    P
Sbjct: 1334 STSGICMFLGDSLISWKSKKQNMASSSSAESEYRAMAMGSREIAWLVKLLAEFQVKQTKP 1393

Query: 291  IPLFCDNQAALHIVANPVFHERTKHLDIDCHLVRNQYKSGFVLPQKVGSLDQLADLFTKP 112
            +PLFCD+ AA+HI  N VFHERTKH++ DCH+ R++ + G +    V +  QLAD+ TKP
Sbjct: 1394 VPLFCDSTAAIHIANNAVFHERTKHIENDCHITRDRIEQGMLKTMHVDTTSQLADVLTKP 1453

Query: 111  LGKQLFRSFVVKLGM 67
            L   LF S + K+ +
Sbjct: 1454 LFPTLFNSLIGKMSL 1468


>gb|KYP39497.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1445

 Score =  979 bits (2532), Expect = 0.0
 Identities = 549/1476 (37%), Positives = 833/1476 (56%), Gaps = 45/1476 (3%)
 Frame = -3

Query: 4347 DPLQLHGSDHPGMLLVSNQLTGNNYLSWSRSMMIALGAKTKLGFVNGTVTMPKSDSPEYD 4168
            +PL LH  ++P ++LV+  L+ NN+  W   M++AL  K K  FV GT+T P    P + 
Sbjct: 18   NPLFLHPGENPALILVTPLLSDNNFPQWKHDMLVALETKNKDQFVLGTLTCPNLSDPLHK 77

Query: 4167 SWKRVDLMVTSWILNSISKEIVDAFLYVKSAHELCEDIAQRFGECNGTVLYQLQKEISTL 3988
            +W R + MV SW+ +S++  I  + ++++SA E+  D+  RF   +   +  LQ+E+   
Sbjct: 78   AWCRCNKMVMSWLAHSMTPSIRQSVMWIESASEIWRDLCDRFSHGDKFRIADLQEELQNC 137

Query: 3987 TQGNATVAVYFTKLKKLWDEYSSLEPL-----PV-CKCGADKILAEKELNRRLMQFLMGL 3826
             QG  TV+ Y+T+L+ LW E S    +     PV C CG    + ++  +  +++FL GL
Sbjct: 138  KQGELTVSQYYTRLRILWKELSIYRTVLACSCPVACSCGIFSKIQKERDDDCVIKFLRGL 197

Query: 3825 NDTYDHIRSQILIMDPLPSVNRAYSMIQRVEKQRDVQVNFPHTMDTAALLAKLPHXXXXX 3646
            ND +  +RSQ+++M+P+P + R +S++  ++++R+     P     +A LA         
Sbjct: 198  NDEFSQVRSQVMLMEPMPGLTRTFSLV--LQQEREFGGPVPPIPQESAALATFNDDSARN 255

Query: 3645 XXXXXXXGSNWQXXXXXXXXXREEKAKLTCEHCKMTGHEITECFKLHGYPEWFKQPREQR 3466
                    SN +            ++   C  CK T H I  CF+++G+P  ++      
Sbjct: 256  NSSTRGGFSNTRGGGRSGRGNNTGRSTRFCTKCKKTNHTIDTCFQIYGFPPGYRT----N 311

Query: 3465 GRGVANFVGTPADSNMTVDISGKGGSAGDMSTLIQQEIAKFMATHASKPLTEKTEIMNMD 3286
            G+  +    T   S    D +    SA    T  + ++      + SK   +      + 
Sbjct: 312  GKSTSTTSNTSKSSVNNFDSTTSLVSA----TSAKDDVTSQNTFNFSKDQYQAL----LG 363

Query: 3285 FAHFVDYAGSNISSDTYCALSTFDHSV-KDCWIIDTGASRHMCYNKSLLTNLVPLPSSTI 3109
                      +++S   C++ST   ++ +  WI+D+GA+ H+C +KS  ++L+P+   ++
Sbjct: 364  LLQQSQDPSPSVNSAHKCSVSTPGINLFQSSWILDSGATDHICPSKSYFSSLIPIKPVSV 423

Query: 3108 IFLPDGSTKQVTHSGQVTLSSSLTLYDVLLVPSFTYNLLSVAQLTHNSHLKFVFYASHCV 2929
              LP+  +    +SG + L + LTLY+ L VP F+ +L+S+ +L    +   +F    C+
Sbjct: 424  K-LPNNQSVFACYSGTIHLGN-LTLYNALYVPDFSVHLISIPKLVTTLNCIVIFCEYDCI 481

Query: 2928 LQDQRTEEVVAVGKAHGRLYILQPFSTHNSSSGFTCASTSNFHSLSC------NNVLLEW 2767
            +  + T +++   K    L+ L     HN S GF+    +    L+       +N    W
Sbjct: 482  IVQRHTFKMIGAAKQQSGLFQLLQ---HNDSLGFSTTGNNCTTVLATTLNDNFSNSTSVW 538

Query: 2766 HSKLGHPSVSVLEHIPCLQPFYNPSMKHIFDDCEICHKSKQPRLSFPLSTTRSGSCFDLI 2587
            H+KLGHPS  VL+ +          + H+   C+IC  +KQ +L FP ST+ +   F+LI
Sbjct: 539  HAKLGHPSNKVLQTLSSQYTSIKFPLVHV---CDICSFAKQKKLPFPDSTSITNFFFELI 595

Query: 2586 HVDVWGPYAKFNVSNTPYMLTLVDDYSRATWTYFLAHKSQVVSILESFFLMINTQFDKKV 2407
            HVD+WGP A  ++    Y LT+VDDYSR TW + L  K +V S+L +F ++I  Q D K+
Sbjct: 596  HVDIWGPLAISSIEGYKYFLTVVDDYSRFTWIHLLKSKQEVKSLLPNFIILIENQHDCKL 655

Query: 2406 KVVRSDNGSEFVNHSCQALFHSLGIVHQKSCVYTPQQNGVVERKHRTLLNLGRALMFQSG 2227
            K +RSDNG EF+  +    +++ GI+H+ SCV TPQQNG+VERKH+ LLN+ RAL+FQS 
Sbjct: 656  KRLRSDNGKEFILTN---FYNAKGILHETSCVETPQQNGIVERKHQHLLNVCRALLFQSQ 712

Query: 2226 VPMKFWVHSLMTATYLVNRLPSVVLGWQTPYELLYGKPPDYSTIKPFGCLAFATNVSPHK 2047
            +P  FW +++  A +++NRLP+  L  ++P+E++Y   PD   ++ FGCLA+A+ ++  +
Sbjct: 713  IPKTFWSYAIKHAVHIINRLPTRFLKQKSPFEMIYHHKPDLHDLRVFGCLAYASTLAAGR 772

Query: 2046 HKFEARAHRCLFVGYCPGSKGYRLFDMDSNQFLISRDVHFIETTFPF------------- 1906
             K   RA +C+F+GY  G+KGY L+++ S  F +SR+V F ET FP+             
Sbjct: 773  TKLAPRASKCIFLGYKSGTKGYVLYNLHSRFFSLSRNVIFHETVFPYSDFHKFSSNSDAI 832

Query: 1905 ------------------LQHTATKSPTPLPLVPVTEDQFXXXXXXXXXXXXXXXXXXXS 1780
                              L+ T T +P+     P+TE+                     S
Sbjct: 833  LTESTNDFAHYELYPITVLETTNTHTPSEQLQQPLTEEM-----------QDIPVQPRVS 881

Query: 1779 TRLLKPPSWLNDYVTNTCTDSLPTTTITPPVLSTPGSSSTISTLPSFVS-PPLSSTYVSF 1603
            TR    P++LN Y   + T S               +S+ +  L S++S    SS Y +F
Sbjct: 882  TRQKFRPNYLNQYHCYSATSS---------------NSACLYPLHSYLSYNKCSSNYTAF 926

Query: 1602 LANITNQQEPRSFTQASKDVNWVRAMHKELEALEKNGTWELTALPQGKKAIGSKWVYKLK 1423
              +I+   EP ++ QA     W +AM  EL+AL +N TW L +LP G+K IG KWVY++K
Sbjct: 927  CLSISAHVEPSNYAQAITQDCWKQAMMTELDALNRNRTWSLVSLPPGRKLIGCKWVYRIK 986

Query: 1422 LLPDGSIDRYKARLVAKGYHQVYGLDYLDNFSPVARLVTVRMLIAVATMKGWDLEQLDIN 1243
               DGS+DR+KARLVAKG+ Q  G+DY + FSPVA+L TVR L+A+A+   W L QLD++
Sbjct: 987  YKADGSVDRHKARLVAKGFTQTEGIDYFETFSPVAKLTTVRFLLALASTNNWFLHQLDVD 1046

Query: 1242 NAFLHGYLNEDIYMTPPEGYSKAKPGQVCHLKRSLYGLKQASRQWNLEFCQKLVAYGMVQ 1063
            NAFLHG L E++YM PP+G        VC L++SLYGLKQASR WN +   +L+  G  Q
Sbjct: 1047 NAFLHGDLEEEVYMRPPQGLQLPDSKLVCKLEKSLYGLKQASRNWNQKLNSELLHLGYKQ 1106

Query: 1062 SQHDHCLFIKASQSSFLALIIYVDDVLVTGSNSHDIAALKTYLDDMFTIKDLGPAKYFLG 883
            S  DH LFIK   SS   L++YVDDV+++G+N  +I  +K +L   F IKDLGP K+FLG
Sbjct: 1107 SSADHSLFIKKQGSSITILLVYVDDVVLSGNNFSEIQIVKQHLHQKFQIKDLGPLKFFLG 1166

Query: 882  LEIVRSMEGTYLNQRKYILDILSDVGLTDCKPAPLPFPQGLKLVAQAGEPFSDPDQYRRL 703
            LE+ RS +G  LNQRKY L+++ + GL   KPAP P    +KL A  G   +DP  +RRL
Sbjct: 1167 LEVARSKKGIILNQRKYCLELIDESGLLGSKPAPTPADPAIKLHADHGSLLNDPTSFRRL 1226

Query: 702  VGRLLYLNLTRADITYCVQQLSQFVNSPHTSHWDAAIHVLRYLKGCPSTGLFYPADASFD 523
            +GRLLYL  TR DI++ VQQLSQFV+ P   H  AA+ ++RYLKG P  GLFYPA+    
Sbjct: 1227 IGRLLYLTNTRPDISFSVQQLSQFVSQPREPHLQAALRIVRYLKGAPGLGLFYPAENHLR 1286

Query: 522  FRAFSDADWASCGDTRRSLTGFCVFFGGSLVXXXXXXXXXXXXXTAEAEYRAMSTTVCEL 343
             +AFSD+DWA+C  TR+S+TG+CVF G SLV             ++EAEYRA+++  CEL
Sbjct: 1287 IQAFSDSDWATCSTTRKSVTGYCVFLGKSLVSWKSKKQSTVSRSSSEAEYRALASLTCEL 1346

Query: 342  QWLSYLARDLQLPIPTPIPLFCDNQAALHIVANPVFHERTKHLDIDCHLVRNQYKSGFVL 163
            QWL +L+  L + IP P  +F D+Q+A+ I  NP FHERTKH+++DCHL+R + +   + 
Sbjct: 1347 QWLKFLSDSLFVKIPAPFSVFSDSQSAIQIAKNPTFHERTKHIEVDCHLIRIKLQEELLH 1406

Query: 162  PQKVGSLDQLADLFTKPLGKQLFRSFVVKLGMKDFH 55
               V S +QLAD FTK L  +LF   + KLG+ + H
Sbjct: 1407 LIHVPSANQLADAFTKSLYPKLFLHAISKLGLSNIH 1442


>gb|KYP61022.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1316

 Score =  967 bits (2501), Expect = 0.0
 Identities = 560/1410 (39%), Positives = 804/1410 (57%), Gaps = 46/1410 (3%)
 Frame = -3

Query: 4146 MVTSWILNSISKEIVDAFLYVKSAHELCEDIAQRFGECNGTVLYQLQKEISTLTQGNATV 3967
            MV SW+++S+S  I  + L++  A ++ +D+  R+ + +   +  LQ E S+L QG+ +V
Sbjct: 1    MVVSWLVHSVSPSIRQSILWMDQADDIWKDLKTRYSQGDLLRVSDLQLEASSLKQGDLSV 60

Query: 3966 AVYFTKLKKLWDEYSSLEPLP------VCKCGADKILAEKELNRRLMQFLMGLNDTYDHI 3805
              YFTKL+ LWDE  +  P P       C C    I+A+++L  + MQFL GLND Y+++
Sbjct: 61   TEYFTKLRILWDELENFRPDPNCTCTIKCACSVLTIIAQRKLEDQAMQFLRGLNDQYNNV 120

Query: 3804 RSQILIMDPLPSVNRAYSMIQRVEKQRDVQVNF---PHTMDTAALLAKLPHXXXXXXXXX 3634
            +S +L+M+P   +++ +S + + E+Q   Q NF    H   T+++ A             
Sbjct: 121  KSHVLLMEP--PISKIFSYVVQQERQLLGQ-NFIANVHLDRTSSINAV------------ 165

Query: 3633 XXXGSNWQXXXXXXXXXREEKAKLTCEHCKMTGHEITECFKLHGYPEWFKQPREQRGRGV 3454
                                 A  TC HC  TGH    CF+ HG+P      R  +G   
Sbjct: 166  ---------------------ASPTCTHCNRTGHTDAVCFRKHGFPSTTN--RSNKG--- 199

Query: 3453 ANFVGTPADSNMTVDISGKGGSAGDMSTLIQQEIAKFMATHASKPLTEKTEIMNMDFAHF 3274
                     SN    I    G  G    +  Q   K      SKPL++KT  +N      
Sbjct: 200  --------SSNRPRRICTHCGKTGHTIEVCYQ---KHGFPPGSKPLSDKTASVNHTVTGD 248

Query: 3273 VDYAGSNISSDTYCALSTFDH-----SVKDCWIIDTGASRHMCYNKSLLTNLVPLPSSTI 3109
                 S  S ++    ++F       S    WI+D+GA+ H+  + S  ++  P+ +   
Sbjct: 249  CKVTESTQSLESQDVRTSFPIVCSAISTPSSWILDSGATDHVSSSLSHFSSFSPI-NPID 307

Query: 3108 IFLPDGSTKQVTHSGQVTLSSSLTLYDVLLVPSFTYNLLSVAQLTHNSHLKFVFYASHCV 2929
            + LP G     THSG V  ++S  L DVL +P+FTYNL+S+++L  +   + +F    C+
Sbjct: 308  VKLPTGQHVLATHSGTVKFTNSFYLVDVLYIPAFTYNLISISKLVSSLSCQLIFDHHSCI 367

Query: 2928 LQDQRTEEVVAVGKAHGRLYILQPFSTHNSSSGFTCASTSNFHSLSCNNVLLE------- 2770
            +Q+  T               ++   T + + G    + SN H  S N+V++        
Sbjct: 368  IQETNT---------------MKKIGTVDVNEGLYSFTASNIHHPSTNSVIVHPKCSIQP 412

Query: 2769 ---WHSKLGHPSVSVLEHIPCLQPFYNPSMKHIFDDCEICHKSKQPRLSFPLSTTRSGSC 2599
               WH ++GH S   L+  P L      S+   F  C  CH +KQ +L FPLS + +   
Sbjct: 413  IDLWHFRMGHLSHERLQSFPFL------SVDTSFS-CNTCHHAKQKKLPFPLSHSYASQP 465

Query: 2598 FDLIHVDVWGPYAKFNVSNTPYMLTLVDDYSRATWTYFLAHKSQVVSILESFFLMINTQF 2419
            FDL+H+D+WGP +  ++    Y LT+VDD++R TW + + +KS+    + +F   + TQF
Sbjct: 466  FDLLHMDIWGPCSVTSMHGHKYFLTIVDDHTRFTWLFLMQNKSETRQHIINFINQVETQF 525

Query: 2418 DKKVKVVRSDNGSEFVNHSCQALFHSLGIVHQKSCVYTPQQNGVVERKHRTLLNLGRALM 2239
            DK VKV+R+DNG EF   S    F S GI+HQ +CV TPQQNG+VERKH+ LLN+ R+L+
Sbjct: 526  DKHVKVIRTDNGLEF---SMTQYFSSKGIIHQTTCVETPQQNGIVERKHQHLLNVTRSLL 582

Query: 2238 FQSGVPMKFWVHSLMTATYLVNRLPSVVLGWQTPYELLYGKPPDYSTIKPFGCLAFATNV 2059
            FQ+ +P  FW  +LM AT+L+N +P+  L   +P+E LYG P D S +  FGCL +++ +
Sbjct: 583  FQANLPSIFWCFALMHATFLINCIPTPFLHNISPFEKLYGHPCDISILCVFGCLCYSSTI 642

Query: 2058 SPHKHKFEARAHRCLFVGYCPGSKGYRLFDMDSNQFLISRDVHFIETTFP-FLQHTATKS 1882
            + H+ K + RAH C+F+G+ P +KGY LF++ ++  L+SR+V F E  FP F +  +   
Sbjct: 643  TSHRTKLDPRAHPCIFLGFKPHTKGYLLFNLHTHGLLVSRNVLFHEDHFPSFTKPHSPSF 702

Query: 1881 PTPLPLV-------------------PVTEDQFXXXXXXXXXXXXXXXXXXXSTRLLKPP 1759
             +P+P+                    P T DQ                     TR  +PP
Sbjct: 703  SSPVPIHYNYVDYPTFPSSSIVESSDPPTSDQHSSPPPLRRS-----------TRPRRPP 751

Query: 1758 SWLNDYVTNTCTDSLPTTTITPPVLSTPGSSSTIS-TLPSFVSPPL-SSTYVSFLANITN 1585
            ++L D+          T+T      ST  SS+ I   L SF+S  L S ++  ++ +I++
Sbjct: 752  TYLQDF------HGAFTST------STAHSSTGIRHPLHSFLSYDLLSPSFHHYVFSISS 799

Query: 1584 QQEPRSFTQASKDVNWVRAMHKELEALEKNGTWELTALPQGKKAIGSKWVYKLKLLPDGS 1405
              EP++F +ASK  +W++AMH+E+ ALE N TW LT LP  K AIG +WVYK+K   DGS
Sbjct: 800  VTEPKNFAEASKSDSWLKAMHEEIFALEANNTWVLTTLPPHKTAIGCRWVYKVKHKADGS 859

Query: 1404 IDRYKARLVAKGYHQVYGLDYLDNFSPVARLVTVRMLIAVATMKGWDLEQLDINNAFLHG 1225
            IDRYKARLVAKGY Q+ GLD+ D FSPVA+L TVR+L+++A +  W L+QLD+NNAFLHG
Sbjct: 860  IDRYKARLVAKGYTQMEGLDFFDTFSPVAKLTTVRLLLSLAAINNWHLKQLDVNNAFLHG 919

Query: 1224 YLNEDIYMTPPEGYSKAKPGQVCHLKRSLYGLKQASRQWNLEFCQKLVAYGMVQSQHDHC 1045
             LNE++YM  P G + + PGQVC L+RSLYGLKQASRQW       L+ +G V S  DH 
Sbjct: 920  DLNEEVYMQLPPGLTPSFPGQVCRLQRSLYGLKQASRQWYARLSSFLIQHGYVPSPSDHS 979

Query: 1044 LFIKASQSSFLALIIYVDDVLVTGSNSHDIAALKTYLDDMFTIKDLGPAKYFLGLEIVRS 865
            LF+K S ++  A++IYVDD+++ G++  +I  L + L   F IKDLG  KYFLGLE+ R+
Sbjct: 980  LFLKCSPATTTAILIYVDDIVLAGNDLTEIHHLTSLLHTTFQIKDLGNLKYFLGLEVARN 1039

Query: 864  MEGTYLNQRKYILDILSDVGLTDCKPAPLPFPQGLKLVAQAGEPFSDPDQYRRLVGRLLY 685
              G +L QRKYILD+LSD G+   KP   P    + L A +G P +D   YRRLVGRL+Y
Sbjct: 1040 HTGIHLCQRKYILDLLSDTGMLASKPVSTPMDYSMHLSASSGTPLTDTAAYRRLVGRLIY 1099

Query: 684  LNLTRADITYCVQQLSQFVNSPHTSHWDAAIHVLRYLKGCPSTGLFYPADASFDFRAFSD 505
            L  TR DITY VQQLSQFV++P T+H  A   +LRYLKG P +G+F   ++S   RAFSD
Sbjct: 1100 LTNTRPDITYAVQQLSQFVSNPTTAHRQALFRILRYLKGTPGSGIFLSVNSSVQLRAFSD 1159

Query: 504  ADWASCGDTRRSLTGFCVFFGGSLVXXXXXXXXXXXXXTAEAEYRAMSTTVCELQWLSYL 325
            +DWA C DTRRS+TGF V+ G SL+             ++EAEYRA++TT CELQWLSYL
Sbjct: 1160 SDWAGCPDTRRSITGFAVYLGDSLISWKSKKQITVSRSSSEAEYRALATTTCELQWLSYL 1219

Query: 324  ARDLQLPIPTPIPLFCDNQAALHIVANPVFHERTKHLDIDCHLVRNQYKSGFVLPQKVGS 145
             +D  +   +P  L+CDNQ+AL I +NPVFHERTKH++IDCH+VR++  +G +    V S
Sbjct: 1220 LKDFHIDPISPSILYCDNQSALQIASNPVFHERTKHIEIDCHIVRDKVSTGLLKLLPVSS 1279

Query: 144  LDQLADLFTKPLGKQLFRSFVVKLGMKDFH 55
              QLAD+ TKPL   +FRS   KLGM + H
Sbjct: 1280 SQQLADILTKPLSPFVFRSHCSKLGMLNIH 1309


>gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1454

 Score =  929 bits (2400), Expect = 0.0
 Identities = 540/1473 (36%), Positives = 796/1473 (54%), Gaps = 24/1473 (1%)
 Frame = -3

Query: 4413 TPP--PQGNLFFANQIGVKEGKEGDPLQ----LHGSDHPGMLLVSNQLTGNNYLSWSRSM 4252
            TPP  P  N   A++  +   + GDP Q    LH +DHPG+ ++S++L   NY  WS +M
Sbjct: 33   TPPNSPPVNRSGASR-ALTSSESGDPTQSPFFLHSADHPGLNIISHRLDETNYGDWSVAM 91

Query: 4251 MIALGAKTKLGFVNGTVTMPKSDSPEYDSWKRVDLMVTSWILNSISKEIVDAFLYVKSAH 4072
            +I+L AK K GF++GT++ P      +  W R + MV SW+LNS+S +I  + L +  A 
Sbjct: 92   LISLDAKNKTGFIDGTLSRPLESDLNFRLWSRCNSMVKSWLLNSVSPQIYRSILRMNDAS 151

Query: 4071 ELCEDIAQRFGECNGTVLYQLQKEISTLTQGNATVAVYFTKLKKLWDEYSSLEPLPV-CK 3895
            ++  D+  RF   N    Y L +EI    QG  +++ Y+T+LK LWD+  S E L   C 
Sbjct: 152  DIWRDLNSRFNVTNLPRTYNLTQEIQDFRQGTLSLSEYYTRLKTLWDQLDSTEALDEPCT 211

Query: 3894 CGADKILAEKELNRRLMQFLMGLNDTYDHIRSQILIMDPLPSVNRAYSMIQRVEKQRDVQ 3715
            CG    L +K    ++++FL GLN++Y  +R QI+    LPS+   Y ++ +   Q+   
Sbjct: 212  CGKAMRLQQKAEQAKIVKFLAGLNESYAIVRRQIIAKKALPSLGEVYHILDQDNSQQSFS 271

Query: 3714 -VNFPHTMDTAALLAKLPHXXXXXXXXXXXXGSNWQXXXXXXXXXREEKAKLTCEHCKMT 3538
             V  P      + + + P                              K +  C      
Sbjct: 272  NVVAPPAAFQVSEITQSPS----------------MDPTVCYVQNGPNKGRPICSFYNRV 315

Query: 3537 GHEITECFKLHGYPEWFKQPREQRGRGVANFVGTPADSNMTVDISGKGGSAGDMSTLIQQ 3358
            GH    C+K HG+P  F  P+ + G  +      P  +N+             +  L ++
Sbjct: 316  GHIAERCYKKHGFPPGFT-PKGKAGEKLQK--PKPLAANVAESSEVNTSLESMVGNLSKE 372

Query: 3357 EIAKFMATHASKPLTEKTEIMNMDFAHFVDYAGSNISSDTYC---ALSTFDHSVKDC-WI 3190
            ++ +F+A  +S+                 D  G   S  TY     L+   H++    W+
Sbjct: 373  QLQQFIAMFSSQLQNTPPSTYATASTSQSDNLGICFSPSTYSFIGILTVARHTLSSATWV 432

Query: 3189 IDTGASRHMCYNKSLLTNLVPLPSSTIIFLPDGSTKQVTHSGQVTLSSSLTLYDVLLVPS 3010
            ID+GA+ H+ +++SL ++L     S +  LP G T +++  G + L+  + L +VL +P 
Sbjct: 433  IDSGATHHVSHDRSLFSSLDTSVLSAVN-LPTGPTVKISGVGTLKLNDDILLKNVLFIPE 491

Query: 3009 FTYNLLSVAQLTHNSHLKFVFYASHCVLQDQRTEEVVAVGKAHGRLYILQPFSTHNSSSG 2830
            F  NL+S++ LT +   + +F  + C +QD     ++  G+    LY+L           
Sbjct: 492  FRLNLISISSLTDDIGSRVIFDKNSCEIQDLIKGRMLGQGRRVANLYLLDVGD------- 544

Query: 2829 FTCASTSNFHSLSCNNV--LLEWHSKLGHPSVSVLEHIPCLQPFYNPSMKHIFDDCEICH 2656
                      S+S N V  +  WH +LGH S+  L+ I           K   D C +CH
Sbjct: 545  ---------QSISVNAVVDISMWHRRLGHASLQRLDAISDSLGTTRHKNKGS-DFCHVCH 594

Query: 2655 KSKQPRLSFPLSTTRSGSCFDLIHVDVWGPYAKFNVSNTPYMLTLVDDYSRATWTYFLAH 2476
             +KQ +LSFP S       FDL+H+DVWGP++   V    Y LT+VDD+SRATW Y L  
Sbjct: 595  LAKQRKLSFPTSNKVCKEIFDLLHIDVWGPFSVETVEGYKYFLTIVDDHSRATWMYLLKT 654

Query: 2475 KSQVVSILESFFLMINTQFDKKVKVVRSDNGSEFVNHSCQALFHSLGIVHQKSCVYTPQQ 2296
            KS+V+++  +F   +  Q+  KVK VRSDN  E       + +   GIV   SC  TP+Q
Sbjct: 655  KSEVLTVFPAFIQQVENQYKVKVKAVRSDNAPEL---KFTSFYAEKGIVSFHSCPETPEQ 711

Query: 2295 NGVVERKHRTLLNLGRALMFQSGVPMKFWVHSLMTATYLVNRLPSVVLGWQTPYELLYGK 2116
            N VVERKH+ +LN+ RALMFQS VP+  W   ++TA +L+NR PS +L  +TPYE+L G 
Sbjct: 712  NSVVERKHQHILNVARALMFQSQVPLSLWGDCVLTAVFLINRTPSQLLMNKTPYEILTGT 771

Query: 2115 PPDYSTIKPFGCLAFATNVSPHKHKFEARAHRCLFVGYCPGSKGYRLFDMDSNQFLISRD 1936
             P Y  ++ FGCL +++     +HKF+ R+  CLF+GY  G KGY+L D++SN   ISR+
Sbjct: 772  APVYEQLRTFGCLCYSSTSPKQRHKFQPRSRACLFLGYPSGYKGYKLMDLESNTVFISRN 831

Query: 1935 VHFIETTFPFLQHTATKSPTPL--PLVPVTE---DQFXXXXXXXXXXXXXXXXXXXSTRL 1771
            V F E  FP  ++  ++S   L  P+VPV+                          S R+
Sbjct: 832  VQFHEEVFPLAKNPGSESSLKLFTPMVPVSSGIISDTTHSPSSLPSQISDLPPQISSQRV 891

Query: 1770 LKPPSWLNDYVTNTCTDSLPTTTITPPVLSTPGSSSTISTLPSFVSPPLSSTYVSFLANI 1591
             KPP+ LNDY  NT            P+      SSTIS   S +SP    +++ ++ NI
Sbjct: 892  RKPPAHLNDYHCNTMQSDHKY-----PI------SSTISY--SKISP----SHMCYINNI 934

Query: 1590 TNQQEPRSFTQASKDVNWVRAMHKELEALEKNGTWELTALPQGKKAIGSKWVYKLKLLPD 1411
            T    P ++ +A     W  A+  E+ A+EK  TWE+T LP+GKKA+G KWV+ LK L D
Sbjct: 935  TKIPIPTNYAEAQDTKEWCEAVDAEIGAMEKTNTWEITTLPKGKKAVGCKWVFTLKFLAD 994

Query: 1410 GSIDRYKARLVAKGYHQVYGLDYLDNFSPVARLVTVRMLIAVATMKGWDLEQLDINNAFL 1231
            G+++RYKARLVAKGY Q  GLDY D FSPVA++ T+++L+ V+  K W L+QLD++NAFL
Sbjct: 995  GNLERYKARLVAKGYTQKEGLDYTDTFSPVAKMTTIKLLLKVSASKKWFLKQLDVSNAFL 1054

Query: 1230 HGYLNEDIYMTPPEGYSKAK-----PGQVCHLKRSLYGLKQASRQWNLEFCQKLVAYGMV 1066
            +G L E+I+M  PEGY++ K        V  LKRS+YGLKQASRQW  +F   L++ G  
Sbjct: 1055 NGELEEEIFMKIPEGYAERKGIVLPSNVVLRLKRSIYGLKQASRQWFKKFSSSLLSLGFK 1114

Query: 1065 QSQHDHCLFIKASQSSFLALIIYVDDVLVTGSNSHDIAALKTYLDDMFTIKDLGPAKYFL 886
            ++  DH LF+K     F+ +++YVDD+++  ++    A L   LD  F ++DLG  KYFL
Sbjct: 1115 KTHGDHTLFLKMYDGEFVIVLVYVDDIVIASTSEAAAAQLTEELDQRFKLRDLGDLKYFL 1174

Query: 885  GLEIVRSMEGTYLNQRKYILDILSDVGLTDCKPAPLPFPQGLKLVAQAGEPFSDPDQYRR 706
            GLE+ R+  G  + QRKY L++L   G+  CKP  +P    LK+    G+   D +QYRR
Sbjct: 1175 GLEVARTTAGISICQRKYALELLQSTGMLACKPVSVPMIPNLKMRKDDGDLIEDIEQYRR 1234

Query: 705  LVGRLLYLNLTRADITYCVQQLSQFVNSPHTSHWDAAIHVLRYLKGCPSTGLFYPADASF 526
            +VG+L+YL +TR DIT+ V +L QF ++P T+H  AA  VL+Y+KG    GLFY A +  
Sbjct: 1235 IVGKLMYLTITRPDITFAVNKLCQFSSAPRTTHLTAAYRVLQYIKGTVGQGLFYSASSDL 1294

Query: 525  DFRAFSDADWASCGDTRRSLTGFCVFFGGSLVXXXXXXXXXXXXXTAEAEYRAMSTTVCE 346
              + F+D+DWASC D+RRS T F +F G SL+             +AEAEYRA++   CE
Sbjct: 1295 TLKGFADSDWASCQDSRRSTTSFTMFVGDSLISWRSKKQHTVSRSSAEAEYRALALATCE 1354

Query: 345  LQWLSYLARDLQLPIPTPIPLFCDNQAALHIVANPVFHERTKHLDIDCHLVRNQYKSGFV 166
            + WL  L   LQ   P PI L+ D+ AA++I  NPVFHERTKH+ +DCH VR +  +G +
Sbjct: 1355 MVWLFTLLVSLQASPPVPI-LYSDSTAAIYIATNPVFHERTKHIKLDCHTVRERLDNGEL 1413

Query: 165  LPQKVGSLDQLADLFTKPLGKQLFRSFVVKLGM 67
                V + DQ+AD+ TKPL    F     K+ +
Sbjct: 1414 KLLHVRTEDQVADILTKPLFPYQFEHLKSKMSI 1446


>gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1461

 Score =  927 bits (2397), Expect = 0.0
 Identities = 545/1485 (36%), Positives = 801/1485 (53%), Gaps = 31/1485 (2%)
 Frame = -3

Query: 4422 AGGTPPPQGNLFFANQIGVKEGKEGDPLQ----LHGSDHPGMLLVSNQLTGNNYLSWSRS 4255
            A  +PP   +       GV      DP Q    LH +DHPG+ ++S++L    Y  WS +
Sbjct: 35   ASDSPPMARSQTAGASRGVFSSGFDDPTQSPFFLHSADHPGLSIISHRLDETTYGDWSVA 94

Query: 4254 MMIALGAKTKLGFVNGTVTMPKSDSPEYDSWKRVDLMVTSWILNSISKEIVDAFLYVKSA 4075
            M I+L AK KLGFV+G++  P    P +  W R + MV SW+LNS+S +I  + L +  A
Sbjct: 95   MRISLDAKNKLGFVDGSLPRPLESDPNFRLWSRCNSMVKSWLLNSVSPQIYRSILRLNDA 154

Query: 4074 HELCEDIAQRFGECNGTVLYQLQKEISTLTQGNATVAVYFTKLKKLWDEYSSLEPLP-VC 3898
             ++  D+  RF   N    Y L +EI  L QG  +++ Y+T LK LWD+  S E L   C
Sbjct: 155  TDIWRDLFDRFNLTNLPRTYNLTQEIQDLRQGTMSLSEYYTLLKTLWDQLDSTEALDDPC 214

Query: 3897 KCGADKILAEKELNRRLMQFLMGLNDTYDHIRSQILIMDPLPSVNRAYSMIQRVEKQRDV 3718
             CG    L +K    ++M+FL GLN++Y  +R QI+    LPS+   Y ++ +   Q+  
Sbjct: 215  TCGKAVRLYQKAEKAKIMKFLAGLNESYAIVRRQIIAKKALPSLAEVYHILDQDNSQKGF 274

Query: 3717 QVNFPHTMDTAAL-LAKLPHXXXXXXXXXXXXGSNWQXXXXXXXXXREEKAKLTCEHCKM 3541
               F      AA  ++++ H             S               K + TC  C  
Sbjct: 275  ---FNVVAPPAAFQVSEVSH-------------SPITSPEIMYVQSGPNKGRPTCSFCNR 318

Query: 3540 TGHEITECFKLHGYPEWF--------KQPREQRGRGVANFVGTPADSNMTVDISGKGGSA 3385
             GH    C+K HG+P  F        K P+ Q    VA  V T +   MT  +    G+ 
Sbjct: 319  VGHIAERCYKKHGFPPGFTPKGKSSDKPPKPQ---AVAAQV-TLSPDKMTGQLETLAGNF 374

Query: 3384 GDMSTLIQQEIAKFMATHASKPLTEKTEIMNMDFAHFVDYAGSNI--SSDTYCALSTFDH 3211
                  IQ  IA F +    + ++ +T     + +     A S I  S  TYC +     
Sbjct: 375  SPDQ--IQNLIALFSSQLQPQIVSPQTASSQHEASSSQSVAPSGILFSPSTYCFIGILAV 432

Query: 3210 S----VKDCWIIDTGASRHMCYNKSLLTNLVPLPSSTIIF--LPDGSTKQVTHSGQVTLS 3049
            S      D W+ID+GA+ H+ +++ L   L    +S + F  LP G   +++  G V ++
Sbjct: 433  SHNSLSSDTWVIDSGATHHVSHDRKLFQTL---DTSIVSFVNLPTGPNVRISGVGTVLIN 489

Query: 3048 SSLTLYDVLLVPSFTYNLLSVAQLTHNSHLKFVFYASHCVLQDQRTEEVVAVGKAHGRLY 2869
              + L +VL +P F  NL+S++ LT +   + +F  S C +QD      +  GK  G LY
Sbjct: 490  KDIILQNVLFIPEFRLNLISISSLTTDLGTRVIFDPSCCQIQDLTKGLTLGEGKRIGNLY 549

Query: 2868 ILQPFSTHNSSSGFTCASTSNFHSLSCNNVLLEWHSKLGHPSVSVLEHIP-CLQPFYNPS 2692
            +L   S   S +     S               WH +LGHPS S L+ +   L    + +
Sbjct: 550  VLDTQSPAISVNAVVDVSV--------------WHKRLGHPSFSRLDSLSEVLGTTRHKN 595

Query: 2691 MKHIFDDCEICHKSKQPRLSFPLSTTRSGSCFDLIHVDVWGPYAKFNVSNTPYMLTLVDD 2512
             K  +  C +CH +KQ +LSFP +     S F+L+H+DVWGP++   V    Y LT+VDD
Sbjct: 596  KKSAY--CHVCHLAKQKKLSFPSANNICNSTFELLHIDVWGPFSVETVEGYKYFLTIVDD 653

Query: 2511 YSRATWTYFLAHKSQVVSILESFFLMINTQFDKKVKVVRSDNGSEFVNHSCQALFHSLGI 2332
            +SRATW Y L  KS V+++  +F  ++  Q+D +VK VRSDN  E    +    + + GI
Sbjct: 654  HSRATWIYLLKSKSDVLTVFPAFIDLVENQYDTRVKSVRSDNAKEL---AFTEFYKAKGI 710

Query: 2331 VHQKSCVYTPQQNGVVERKHRTLLNLGRALMFQSGVPMKFWVHSLMTATYLVNRLPSVVL 2152
            V   SC  TP+QN VVERKH+ +LN+ RALMFQS + + +W   ++TA +L+NR PS +L
Sbjct: 711  VSFHSCPETPEQNSVVERKHQHILNVARALMFQSNMSLPYWGDCVLTAVFLINRTPSALL 770

Query: 2151 GWQTPYELLYGKPPDYSTIKPFGCLAFATNVSPHKHKFEARAHRCLFVGYCPGSKGYRLF 1972
              +TP+E+L GK PDYS +K FGCL +++  S  +HKF  R+  C+F+GY  G KGY+L 
Sbjct: 771  SNKTPFEVLTGKLPDYSQLKTFGCLCYSSTSSKQRHKFLPRSRACVFLGYPFGFKGYKLL 830

Query: 1971 DMDSNQFLISRDVHFIETTFPFL---QHTATKSPTPLPLVPVTEDQFXXXXXXXXXXXXX 1801
            D++SN   ISR+V F E  FP     Q   T S    P+ P++                 
Sbjct: 831  DLESNVVHISRNVEFHEELFPLASSQQSATTASDVFTPMDPLSSGN--SITSHLPSPQIS 888

Query: 1800 XXXXXXSTRLLKPPSWLNDYVTNTCTDSLPTTTITPPVLSTPGSSSTISTLPSFVSPPLS 1621
                    R+ K P+ L DY                        S  IS+  S+    +S
Sbjct: 889  PSTQISKRRITKFPAHLQDYHC---------------YFVNKDDSHPISSSLSY--SQIS 931

Query: 1620 STYVSFLANITNQQEPRSFTQASKDVNWVRAMHKELEALEKNGTWELTALPQGKKAIGSK 1441
             +++ ++ NI+    P+S+ +A     W  A+ +E+ A+E+  TWE+T+LP GKKA+G K
Sbjct: 932  PSHMLYINNISKIPIPQSYHEAKDSKEWCGAIDQEIGAMERTDTWEITSLPPGKKAVGCK 991

Query: 1440 WVYKLKLLPDGSIDRYKARLVAKGYHQVYGLDYLDNFSPVARLVTVRMLIAVATMKGWDL 1261
            WV+ +K   DGS++R+KAR+VAKGY Q  GLDY + FSPVA++ TV++L+ V+  K W L
Sbjct: 992  WVFTVKFHADGSLERFKARIVAKGYTQKEGLDYTETFSPVAKMATVKLLLKVSASKKWYL 1051

Query: 1260 EQLDINNAFLHGYLNEDIYMTPPEGYSKAK-----PGQVCHLKRSLYGLKQASRQWNLEF 1096
             QLDI+NAFL+G L E IYM  P+GY+  K     P  VC LK+S+YGLKQASRQW L+F
Sbjct: 1052 NQLDISNAFLNGDLEETIYMKLPDGYADIKGTSLPPNVVCRLKKSIYGLKQASRQWFLKF 1111

Query: 1095 CQKLVAYGMVQSQHDHCLFIKASQSSFLALIIYVDDVLVTGSNSHDIAALKTYLDDMFTI 916
               L+A G  +   DH LF++   S F+ L++YVDD+++  +      +L   L   F +
Sbjct: 1112 SNSLLALGFEKQHGDHTLFVRCIGSEFIVLLVYVDDIVIASTTEQAAQSLTEALKASFKL 1171

Query: 915  KDLGPAKYFLGLEIVRSMEGTYLNQRKYILDILSDVGLTDCKPAPLPFPQGLKLVAQAGE 736
            ++LGP KYFLGLE+ R+ EG  L+QRKY L++L+   + DCKP+ +P    ++L    G 
Sbjct: 1172 RELGPLKYFLGLEVARTSEGISLSQRKYALELLTSADMLDCKPSSIPMTPNIRLSKNDGL 1231

Query: 735  PFSDPDQYRRLVGRLLYLNLTRADITYCVQQLSQFVNSPHTSHWDAAIHVLRYLKGCPST 556
               D + YRRLVG+L+YL +TR DIT+ V +L QF ++P T+H  A   VL+Y+KG    
Sbjct: 1232 LLEDKEMYRRLVGKLMYLTITRPDITFAVNKLCQFSSAPRTAHLAAVYKVLQYIKGTVGQ 1291

Query: 555  GLFYPADASFDFRAFSDADWASCGDTRRSLTGFCVFFGGSLVXXXXXXXXXXXXXTAEAE 376
            GLFY A+     + ++DADW +C D+RRS TGF +F G SL+             +AEAE
Sbjct: 1292 GLFYSAEDDLTLKGYTDADWGTCPDSRRSTTGFTMFVGSSLISWRSKKQPTVSRSSAEAE 1351

Query: 375  YRAMSTTVCELQWLSYLARDLQLPIPTPIPLFCDNQAALHIVANPVFHERTKHLDIDCHL 196
            YRA++   CE+ WLS L   L++    PI L+ D+ AA++I  NPVFHERTKH++IDCH 
Sbjct: 1352 YRALALASCEMAWLSTLLLALRVHSGVPI-LYSDSTAAVYIATNPVFHERTKHIEIDCHT 1410

Query: 195  VRNQYKSGFVLPQKVGSLDQLADLFTKPLGKQLFRSFVVKLGMKD 61
            VR +  +G +    V + DQ+AD+ TKPL    F   + K+ +++
Sbjct: 1411 VREKLDNGQLKLLHVKTKDQVADILTKPLFPYQFAHLLSKMSIQN 1455


>gb|KYP70921.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1352

 Score =  886 bits (2290), Expect = 0.0
 Identities = 511/1367 (37%), Positives = 748/1367 (54%), Gaps = 36/1367 (2%)
 Frame = -3

Query: 4047 RFGECNGTVLYQLQKEISTLTQGNATVAVYFTKLKKLWDEYSSLEPLPVC----KCGADK 3880
            R+ + +   +  LQ E S++ QG+ ++  +FTKL+ +WDE  +  P P C    KC  + 
Sbjct: 45   RYAQSDLLRISDLQHEASSIRQGDLSITEFFTKLRVIWDELENFRPDPTCSCTQKCSCNV 104

Query: 3879 I--LAEKELNRRLMQFLMGLNDTYDHIRSQILIMDPLPSVNRAYSMIQRVEKQRDVQVNF 3706
            I  +A+++   + MQFL GLN+ Y +++S +L+MDP+P +++ +S + + E+Q       
Sbjct: 105  IPTIAQRKREDQAMQFLRGLNEQYSNVKSHVLLMDPIPPISKIFSYVVQQERQLLGSNFV 164

Query: 3705 PHTMDTAALLAKLPHXXXXXXXXXXXXGSNWQXXXXXXXXXREEKAKLTCEHCKMTGHEI 3526
             +T+   A++                                   + +TC +C   GH  
Sbjct: 165  ANTITKTAII--------------------------------NAASSVTCTYCGKQGHAE 192

Query: 3525 TECFKLHGYPEWFKQPREQRGRGVANF-VGTPADSNMTVDISGKGGSAGDMS-------T 3370
              C++ HG+P        +  +GV    +G  +  N TV    K       +       T
Sbjct: 193  NVCYRKHGFPS---NHENKTNKGVYKASIGKTSIVNSTVTDECKTNDQQQATITQDYRFT 249

Query: 3369 LIQQEIAKFMATHASKPLTEKTEIMNMDFAHFVDYAGSNISSDTYCALSTFDHS-VKDCW 3193
              Q ++   +    +   +  +   + +  H V    +  S       S   H+ +   W
Sbjct: 250  PQQYQVLMDLIQQCTND-SSASPSPSTNHIHSVSSCSTQPSPPPGTVSSISTHTQISTSW 308

Query: 3192 IIDTGASRHMCYNKSLLTNLVPLPSSTIIF--LPDGSTKQVTHSGQVTLSSSLTLYDVLL 3019
            +ID+GA+ H+    S L+N     S   I   LP G     TH+G V  + +  L DVL 
Sbjct: 309  VIDSGATDHV---SSSLSNFFTYNSINPITVKLPTGQHVLATHAGVVKFTDTFYLTDVLF 365

Query: 3018 VPSFTYNLLSVAQLTHNSHLKFVFYASHCVLQDQRTEEVVAVGKAHGRLYILQPFSTHNS 2839
            +P F YNL+S+++L  +  ++ +FY++HC++QD  T+E +        LY +       S
Sbjct: 366  IPEFKYNLISISKLVSSLDVQLIFYSTHCLIQDVNTKEKIGTVDVEVGLYTMTTAVVQPS 425

Query: 2838 SSGFTCASTSNFHSLSCNNVLLEWHSKLGHPSV----SVLEHIPCLQPFYNPSMKHIFDD 2671
                   S       S  N+ L WH +LGH       S+ ++ PCL      S KH    
Sbjct: 426  -----ILSAIYNPEWSIQNIDL-WHFRLGHLPYDKLHSMKQYYPCLY-----SNKHF--T 472

Query: 2670 CEICHKSKQPRLSFPLSTTRSGSCFDLIHVDVWGPYAKFNVSNTPYMLTLVDDYSRATWT 2491
            C  CH +KQ +LSFPLS + +   F L+H+D+WGP +K ++    Y LT+VDD++R TW 
Sbjct: 473  CNTCHHAKQKKLSFPLSHSHALQSFALLHIDIWGPCSKTSIHGHRYFLTIVDDHTRYTWV 532

Query: 2490 YFLAHKSQVVSILESFFLMINTQFDKKVKVVRSDNGSEFVNHSCQALFHSLGIVHQKSCV 2311
            + +A K+   + + +F   I  QF  +VKV+R+DNG+EF   S    F S GI+HQ +C+
Sbjct: 533  FLMASKADTCNCVTNFISHIENQFATRVKVIRTDNGAEF---SMNNYFDSKGIIHQTTCI 589

Query: 2310 YTPQQNGVVERKHRTLLNLGRALMFQSGVPMKFWVHSLMTATYLVNRLPSVVLGWQTPYE 2131
             TP+QN +VERKH+ LLN+ RAL+FQS +P  FW  +LM ATY++N +P+  L   +P+E
Sbjct: 590  ETPEQNRIVERKHQHLLNVTRALLFQSNLPPTFWNFALMHATYIINCIPTPFLQHTSPFE 649

Query: 2130 LLYGKPPDYSTIKPFGCLAFATNVSPHKHKFEARAHRCLFVGYCPGSKGYRLFDMDSNQF 1951
             L GKP D +T++ FGCL + + +  H+ K + RA  C+F+G+ P +KGY  F++++   
Sbjct: 650  NLNGKPCDITTLRVFGCLCYVSTLKAHRTKLDPRASPCVFLGFQPHTKGYLTFNLNTRSI 709

Query: 1950 LISRDVHFIETTFP-FLQHTATKSPTPLPLVPVTEDQFXXXXXXXXXXXXXXXXXXXS-- 1780
             +SR+V F E  FP F Q T + S TP    P T +                     S  
Sbjct: 710  EVSRNVVFYENHFPYFTQDTQSASSTPSLPTPFTSNPMIHDYNFYPPSPSSHPPHSLSSP 769

Query: 1779 ------------TRLLKPPSWLNDYVTNTCTDSLPTTTITPPVLSTPGSSSTISTLPSFV 1636
                        TR   PPS+L DY          T T T P  S+PG    + ++ S+ 
Sbjct: 770  ESPTSSPIPSRPTRSRHPPSYLRDYHM--------TFTSTGPS-SSPGIRYPLDSVISYN 820

Query: 1635 SPPLSSTYVSFLANITNQQEPRSFTQASKDVNWVRAMHKELEALEKNGTWELTALPQGKK 1456
               LS  +  F+ +I+   EP+S+ +ASK   W++AM  E+ ALE N TW +T+LP  K 
Sbjct: 821  R--LSHPFRHFIMSISLLTEPKSYAEASKSDCWIKAMTDEITALEANNTWTVTSLPPHKT 878

Query: 1455 AIGSKWVYKLKLLPDGSIDRYKARLVAKGYHQVYGLDYLDNFSPVARLVTVRMLIAVATM 1276
            AIG KW+YK+K   DGS++R+KARLVAKGY Q+ GLD+LD F+PVA+L TV +L+++A +
Sbjct: 879  AIGCKWIYKVKHHADGSVERHKARLVAKGYTQLEGLDFLDTFAPVAKLTTVHLLLSLAAI 938

Query: 1275 KGWDLEQLDINNAFLHGYLNEDIYMTPPEGYSKAKPGQVCHLKRSLYGLKQASRQWNLEF 1096
              W L+QLDINNAFLHG LNE++YM  P G +   PGQVC L RSLYGLKQASRQW    
Sbjct: 939  HNWFLKQLDINNAFLHGDLNEEVYMHLPPGLTTTTPGQVCKLNRSLYGLKQASRQWYARL 998

Query: 1095 CQKLVAYGMVQSQHDHCLFIKASQSSFLALIIYVDDVLVTGSNSHDIAALKTYLDDMFTI 916
               ++  G   S  DH LF+K + S+  AL++YVDD+++ G++  +I  +   L   F I
Sbjct: 999  STFIMQQGFHHSSADHSLFLKFTNSACTALLVYVDDIVLAGNDLTEIHQITALLHKTFKI 1058

Query: 915  KDLGPAKYFLGLEIVRSMEGTYLNQRKYILDILSDVGLTDCKPAPLPFPQGLKLVAQAGE 736
            KDLG   YFLGLE+ R+    +L QRKY LDILSD G+  C P+         L +  G 
Sbjct: 1059 KDLGDLTYFLGLEVARNSIEIHLCQRKYTLDILSDTGMLACCPSSTLMDYKAALSSDTGT 1118

Query: 735  PFSDPDQYRRLVGRLLYLNLTRADITYCVQQLSQFVNSPHTSHWDAAIHVLRYLKGCPST 556
            P +DP  YR+L+GRL+YL  T  DIT+ VQ LSQF + P T H  AA  +LRYLK  P  
Sbjct: 1119 PLTDPSAYRQLIGRLIYLTNTHPDITHAVQHLSQFASKPTTYHQHAAFRILRYLKQAPGR 1178

Query: 555  GLFYPADASFDFRAFSDADWASCGDTRRSLTGFCVFFGGSLVXXXXXXXXXXXXXTAEAE 376
            G+F  A++S   ++FSD+DWA C DTRRS+TGF V+ G SL+             ++EAE
Sbjct: 1179 GIFLSANSSLQLKSFSDSDWAGCMDTRRSITGFAVYLGHSLISWKSKKQATVSRSSSEAE 1238

Query: 375  YRAMSTTVCELQWLSYLARDLQLPIPTPIPLFCDNQAALHIVANPVFHERTKHLDIDCHL 196
            YRA+++T CE+QWL+YL  D +L    P  L+CDNQ+ L I  N VFHERTKH++IDCHL
Sbjct: 1239 YRALASTSCEIQWLTYLLEDFRLQFIRPALLYCDNQSVLQIACNQVFHERTKHIEIDCHL 1298

Query: 195  VRNQYKSGFVLPQKVGSLDQLADLFTKPLGKQLFRSFVVKLGMKDFH 55
            VR +  +G +    V S  QLAD++TK L    F     KLGM D +
Sbjct: 1299 VREKVSNGLLKLLPVSSSAQLADIYTKALSPSRFNELNSKLGMSDIY 1345


>emb|CAN63908.1| hypothetical protein VITISV_044218 [Vitis vinifera]
          Length = 1236

 Score =  863 bits (2230), Expect = 0.0
 Identities = 519/1330 (39%), Positives = 733/1330 (55%), Gaps = 24/1330 (1%)
 Frame = -3

Query: 4347 DPLQLHGSDHPGMLLVSNQLTGNNYLSWSRSMMIALGAKTKLGFVNGTVTMPKS-DSP-E 4174
            +P  LH SDHPG++L+S  L G+NY +W R+M I+L AK+KLGF++GT TMP + D P E
Sbjct: 16   NPYFLHHSDHPGIVLISKPLNGDNYWTWCRAMTISLNAKSKLGFIDGTTTMPSATDKPDE 75

Query: 4173 YDSWKRVDLMVTSWILNSISKEIVDAFLYVKSAHELCEDIAQRFGECNGTVLYQLQKEIS 3994
            +  WK+ + M+ SWILNS+S+++ D+ ++  +A E+ ED+  RF + N   ++Q++++I+
Sbjct: 76   HALWKKCNDMILSWILNSLSQDLADSVIFSTTAQEVWEDLRDRFSQTNAPHIFQIERDIA 135

Query: 3993 TLTQGNATVAVYFTKLKKLWDEYSSLEPLPVCKCGADKILAEKELNRRLMQFLMGLNDTY 3814
             LTQ   TVA Y+T+LKKLWDE  S     VC CGAD         RRLMQFLMGLN++Y
Sbjct: 136  CLTQDQMTVAAYYTRLKKLWDELGSYNDT-VCSCGAD------HKRRRLMQFLMGLNESY 188

Query: 3813 DHIRSQILIMDPLPSVNRAYSMIQRVEKQRDVQVNFPHTMDTAALLAKL-PHXXXXXXXX 3637
            + IR QIL+M+PLP V +AYS I + EKQR +      T ++A ++ +  P         
Sbjct: 189  NAIRGQILLMNPLPDVAKAYSSIVQEEKQRSLGATREMTENSAMVIRRAEPMALVVRHGQ 248

Query: 3636 XXXXGSNWQXXXXXXXXXREEKAKLTCEHCKMTGHEITECFKLHGYPEWFKQPREQRGRG 3457
                 SN              +  L C +C    H    C+KL+GYP   + P+    R 
Sbjct: 249  GSSSRSN-----------PSNRKPLHCSYCDRDHHVRETCWKLNGYPP--EHPKHASNR- 294

Query: 3456 VANFVGTPADSNMTVDISGKGGSAGDMSTLIQQEIAKFMATHASKPLTEKTEIMNMDFAH 3277
             +N   T    N     +    SA ++                 +P+ ++   M    + 
Sbjct: 295  -SNHGSTHFKRN-----NSHQSSANNVK---------------ERPVMQEVPSMTNGLS- 332

Query: 3276 FVDYAGSNISSDTYCALSTFDHSVKDCWIIDTGASRHMCYNKSLLTNLVPLPSSTIIFLP 3097
              D     I S     L T  H  +   IID+GA+ H+  + +LL N        ++ +P
Sbjct: 333  --DLQIQQILSIMQGLLQTLLHLHR--LIIDSGATYHITSSPTLLVNSSKNTFLPLVAMP 388

Query: 3096 DGSTKQVTHSGQVTLSSSLTLYDVLLVPSFTYNLLSVAQLTHNSHLKFVFYASHCVLQDQ 2917
             G    +T  G + L+  +TL + L VPSF  +L+SV+++T + +    F+   C+LQD 
Sbjct: 389  SGEQAPITSIGNLPLNYVVTLKNALGVPSFKVDLMSVSRVTKDLNCSVTFFPHWCILQDL 448

Query: 2916 RTEEVVAVGKAHGRLYIL------QPFSTHNSSSGFTCASTSNFHSLSCNNVLLEWHSKL 2755
             T   + +G+    LY L      +P +   S++  +C S S+   ++ +  L  WH  L
Sbjct: 449  TTRTTIGLGEQRDGLYYLVALASKKPKTQTPSAAATSCRSPSS--QVTSSTAL--WHRCL 504

Query: 2754 GHPSVSVLEHIPCLQPFYNPSMKHIFD-------DCEICHKSKQPRLSFPLSTTRSGSCF 2596
            GH S S L+ +           KH+ +        C++C  +KQ RL F +S+  S   F
Sbjct: 505  GHLSSSRLDFMA----------KHLLNFPFQSNNACDVCALAKQRRLPFSVSSISSVRPF 554

Query: 2595 DLIHVDVWGPYAKFNVSNTPYMLTLVDDYSRATWTYFLAHKSQVVSILESFFLMINTQFD 2416
            +LIH D+WGPY   ++S+  Y LT+VDDYSR TW +F+ HKS+   +L +FF  + TQF 
Sbjct: 555  ELIHCDIWGPYKIASLSSAKYFLTIVDDYSRFTWVFFMHHKSETQHLLVNFFSFVQTQFH 614

Query: 2415 KKVKVVRSDNGSEFVNHSCQALFHSLGIVHQKSCVYTPQQNGVVERKHRTLLNLGRALMF 2236
              +  +R DNG EF   S +  F   G  +Q SCVYTPQQNGVVERKH  +L   RA  F
Sbjct: 615  VSIANIRVDNGGEFF--SMREFFKQKGTTYQHSCVYTPQQNGVVERKHCHILESARAFHF 672

Query: 2235 QSGVPMKFWVHSLMTATYLVNRLPSVVLGWQTPYELLYGKPPDYSTIKPFGCLAFATNVS 2056
            Q+ +P+ FW   + T  +++NRLP+ +L  QTP+E LYGK P YS I+ FGCLA+ATNV 
Sbjct: 673  QAHLPLPFWAECVSTVVHIINRLPTPLLSRQTPFERLYGKLPSYSHIRVFGCLAYATNVH 732

Query: 2055 PHKHKFEARAHRCLFVGYCPGSKGYRLFDMDSNQFLISRDVHFIETTFPFLQHTATKSPT 1876
               HKF  RA RC+F+GY  G K Y+L+D+D++Q   SRDV F ET FP+ +   + S  
Sbjct: 733  I-PHKFAPRAKRCIFLGYPVGQKAYKLYDLDTHQMFTSRDVVFHETIFPY-ESIPSPSSN 790

Query: 1875 PLPLVPVTEDQFXXXXXXXXXXXXXXXXXXXSTRLLKPPSWLNDYVTNTCTDSLPTTTIT 1696
              P++P++                           ++ PS  N   T     S P   I 
Sbjct: 791  SDPVIPLSISDLSPPVQQPSPPEPISP--------IQQPSLPNSVSTQPSPTSPPPEPIL 842

Query: 1695 --------PPVLSTPGSSSTISTLPSFVSPPLSSTYVSFLANITNQQEPRSFTQASKDVN 1540
                    PP+       + + T P+ + PPLSS+    +       EP S+ +A+   +
Sbjct: 843  RRSQRPHHPPMALRDYVCNQV-TFPNHL-PPLSSSPQKDI-------EPTSYAEAASHSH 893

Query: 1539 WVRAMHKELEALEKNGTWELTALPQGKKAIGSKWVYKLKLLPDGSIDRYKARLVAKGYHQ 1360
            W  AM  EL ALE N TW LT+LP GKK IG +WVYK+K   DG+I+R+KARLVAKGY Q
Sbjct: 894  WQEAMQSELAALEANHTWSLTSLPPGKKPIGCRWVYKIKRHSDGTIERFKARLVAKGYTQ 953

Query: 1359 VYGLDYLDNFSPVARLVTVRMLIAVATMKGWDLEQLDINNAFLHGYLNEDIYMTPPEGYS 1180
            + G+DY D FSP A+++ VR L+A+A  + W L QLD NNAFLHG L+E+IYM+PP G  
Sbjct: 954  LEGIDYHDTFSPTAKMIIVRCLLALAAAQNWSLHQLDANNAFLHGDLHEEIYMSPPPGI- 1012

Query: 1179 KAKPGQVCHLKRSLYGLKQASRQWNLEFCQKLVAYGMVQSQHDHCLFIKASQSSFLALII 1000
                                 R+       KL+A    +      LF      SF AL+I
Sbjct: 1013 ---------------------RRQGENLLSKLLALFNPKP-----LFTCRKGKSFTALLI 1046

Query: 999  YVDDVLVTGSNSHDIAALKTYLDDMFTIKDLGPAKYFLGLEIVRSMEGTYLNQRKYILDI 820
            YVDD+L+TG++ + I ALK +L   F IK LG  KYFLG+E+ RS +G  ++QRKY L+I
Sbjct: 1047 YVDDILITGNDVNAIVALKQFLHSHFRIKALGDLKYFLGIEVSRSKKGISISQRKYTLEI 1106

Query: 819  LSDVGLTDCKPAPLPFPQGLKLVAQAGEPFSDPDQYRRLVGRLLYLNLTRADITYCVQQL 640
            L D G    KP   P  Q +KL + +GE   DP QYRRL GRL+YL +TR DITY V  L
Sbjct: 1107 LKDGGFLGAKPVNFPMEQNIKL-SDSGELLKDPSQYRRLFGRLIYLTITRPDITYSVHVL 1165

Query: 639  SQFVNSPHTSHWDAAIHVLRYLKGCPSTGLFYPADASFDFRAFSDADWASCGDTRRSLTG 460
            S+F+++P   H +AA+ VLRYLK  P  GLF+P+      RAFSD+DWA C  +RRS TG
Sbjct: 1166 SRFMHAPRRPHMEAALRVLRYLKNSPGQGLFFPSQNDLSLRAFSDSDWAGCPISRRSTTG 1225

Query: 459  FCVFFGGSLV 430
            +CVF G SL+
Sbjct: 1226 YCVFLGSSLI 1235


>gb|AAF79879.1|AC000348_32 T7N9.5 [Arabidopsis thaliana]
          Length = 1436

 Score =  869 bits (2245), Expect = 0.0
 Identities = 539/1489 (36%), Positives = 771/1489 (51%), Gaps = 50/1489 (3%)
 Frame = -3

Query: 4371 GVKEGKEGD-PLQLHGSDHPGMLLVSNQLTGNNYLSWSRSMMIALGAKTKLGFVNGTVTM 4195
            G K    G+ PL LH SDHPG+ +V++ L G+NY SWS +M I+L AK KLGFV+G++  
Sbjct: 47   GFKVSDSGENPLLLHSSDHPGLSIVAHILDGSNYNSWSIAMRISLDAKNKLGFVDGSLLR 106

Query: 4194 PKSDSPEYDSWKRVDLMVTSWILNSISKEIVDAFLYVKSAHELCEDIAQRFGECNGTVLY 4015
            P  D   +  W R + MV     N++ +                               Y
Sbjct: 107  PSVDDSTFRIWSRCNSMV-----NNLPRR------------------------------Y 131

Query: 4014 QLQKEISTLTQGNATVAVYFTKLKKLWDEYSSLEPLPVCKCGADKI--LAEKELNRRLMQ 3841
            QL++ + TL QG   ++ YFTK K LW++ ++ +   V KC  D++  L E+    R++Q
Sbjct: 132  QLEQAVMTLQQGKLDLSTYFTKKKTLWEQLANTKSRSVKKCDCDQVKELLEEAETSRVIQ 191

Query: 3840 FLMGLNDTYDHIRSQILIMDPLPSVNRAYSMIQRVEKQRDVQVNFPHTMDTAALLAKLPH 3661
            FLMGL+D ++ IRSQI  M P P +N  Y+M+ + E QR V      ++ + +  A    
Sbjct: 192  FLMGLSDDFNTIRSQIFNMKPRPGLNEIYNMLDQDESQRLVGFA-AKSVPSPSPAAFQTQ 250

Query: 3660 XXXXXXXXXXXXGSNWQXXXXXXXXXREEKAKLTCEHCKMTGHEITECFKLHGYPEWFKQ 3481
                          N++              K  C HC   GH + +C+K+HGYP    +
Sbjct: 251  GVLNDQNTILLAQGNFK--------------KPKCTHCNRIGHTVDKCYKVHGYPPGHPR 296

Query: 3480 PREQRGRGVANFVGTP---ADSNMTVDISGKGGSAGD--------MSTLIQQE-----IA 3349
             +E    G  N   T      +  T+  +G    + D        +ST +Q         
Sbjct: 297  AKENTYVGSTNLASTDQIETQAPPTMSATGHETMSNDHIQQLISYLSTKLQSPSITSCFD 356

Query: 3348 KFMATHASKPLTEKTEIMNMDFAHFVDYAGSNISSDTYCALSTFDHSVKD---------- 3199
            K +A+ +S P+   ++I +   A   +   S IS  T    S +D +  +          
Sbjct: 357  KAIAS-SSNPVPSISQITDKAIASSSNPVPS-ISQITGTFFSLYDSTYYEMLTSSIPIET 414

Query: 3198 -----CWIIDTGASRHMCYNKSLLTNLVPLPSSTIIFLPDGSTKQVTHSGQVTLSSSLTL 3034
                  W+ID+GAS H+ + ++L      L   T + LP+G T ++  +G + L+ +L+L
Sbjct: 415  ELSLRAWVIDSGASHHVTHERNLYHTYKAL-DRTFVRLPNGHTVKIEGTGFIQLTDALSL 473

Query: 3033 YDVLLVPSFTYNLLSVAQLTHNSHLKFVFYASHCVLQDQRTEEVVAVGKAHGRLYILQPF 2854
            ++VL +P F +NLLSV+ LT     K  F +  C++Q    E ++  G   G LYIL   
Sbjct: 474  HNVLFIPEFKFNLLSVSVLTKTLQSKVSFTSDECMIQALTKELMLGKGSQVGNLYILNLD 533

Query: 2853 STHNSSSGFTCASTSNFHSLSCNNVLLEWHSKLGHPSVSVLEHIPCLQPFYNPSMKHIFD 2674
             +    S F   S  +    S  N    WH +LGHPS + ++ +  +       +     
Sbjct: 534  KSLVDVSSFPGKSVCS----SVKNESEMWHKRLGHPSFAKIDTLSDVLMLPKQKINKDSS 589

Query: 2673 DCEICHKSKQPRLSFPLSTTRSGSCFDLIHVDVWGPYAKFNVSNTPYMLTLVDDYSRATW 2494
             C +CH SKQ  L F          F+L+H+D WGP++   V +  Y LT+VDD+SRATW
Sbjct: 590  HCHVCHLSKQKHLPFKSVNHIREKAFELVHIDTWGPFSVPTVDSYRYFLTIVDDFSRATW 649

Query: 2493 TYFLAHKSQVVSILESFFLMINTQFDKKVKVVRSDNGSEFVNHSCQALFHSLGIVHQKSC 2314
             Y L  KS V+++  SF  M+ TQ+  KV  VRSDN  E        LF   GI     C
Sbjct: 650  IYLLKQKSDVLTVFPSFLKMVETQYHTKVCSVRSDNAHEL---KFNELFAKEGIKADHPC 706

Query: 2313 VYTPQQNGVVERKHRTLLNLGRALMFQSGVPMKFWVHSLMTATYLVNRLPSVVLGWQTPY 2134
              TP+QN VVERKH+ LLN+ RALMFQSG+P+++W   ++TA +L+NRL S V+  +TPY
Sbjct: 707  PETPEQNFVVERKHQHLLNVARALMFQSGIPLEYWGDCVLTAVFLINRLLSPVINNETPY 766

Query: 2133 ELLYGKPPDYSTIKPFGCLAFATNVSPHKHKFEARAHRCLFVGYCPGSKGYRLFDMDSNQ 1954
            E L    PDYS++K FGCL + +     + KF+ RA  C+F+GY  G KGY+L D+++  
Sbjct: 767  ERLTKGKPDYSSLKAFGCLCYCSTSPKSRTKFDPRAKACIFLGYPMGYKGYKLLDIETYS 826

Query: 1953 FLISRDVHFIETTFPFLQHTATKS----------PTP-----LPLVPVTEDQFXXXXXXX 1819
              ISR V F E  FPF     T +          P P     LPLV  + D         
Sbjct: 827  VSISRHVIFYEDIFPFASSNITDAAKDFFPHIYLPAPNNDEHLPLVQSSSDA--PHNHDE 884

Query: 1818 XXXXXXXXXXXXSTRLLKPPSWLNDYVTNTCTDSLPTTTITPPVLSTPGSSSTISTLPSF 1639
                        STR  K PS L D+    C ++ PTTT T P             L ++
Sbjct: 885  SSSMIFVPSEPKSTRQRKLPSHLQDF---HCYNNTPTTTKTSPY-----------PLTNY 930

Query: 1638 VSPP-LSSTYVSFLANITNQQEPRSFTQASKDVNWVRAMHKELEALEKNGTWELTALPQG 1462
            +S   LS  + +F+  IT  + P+ +++A  D  W  AM KE+ A  + GTW +  LP G
Sbjct: 931  ISYSYLSEPFGAFINIITATKLPQKYSEARLDKVWNDAMGKEISAFVRTGTWSICDLPAG 990

Query: 1461 KKAIGSKWVYKLKLLPDGSIDRYKARLVAKGYHQVYGLDYLDNFSPVARLVTVRMLIAVA 1282
            K A+G KW+  +K L DGSI+R+KARLVAKGY Q  G+D+ + FSPVA++VTV++L+++A
Sbjct: 991  KVAVGCKWIITIKFLADGSIERHKARLVAKGYTQQEGIDFFNTFSPVAKMVTVKVLLSLA 1050

Query: 1281 TMKGWDLEQLDINNAFLHGYLNEDIYMTPPEGYSKAKPGQVCHLKRSLYGLKQASRQWNL 1102
                W L QLDI+NA L+G L E+IYM  P GYS+ + GQ        +G          
Sbjct: 1051 PKMKWYLHQLDISNALLNGDLEEEIYMKLPPGYSEIQ-GQEVSPNAKCHG---------- 1099

Query: 1101 EFCQKLVAYGMVQSQHDHCLFIKASQSSFLALIIYVDDVLVTGSNSHDIAALKTYLDDMF 922
                            DH LF+KA    FL +++YVDD+L+  +     A L + L   F
Sbjct: 1100 ----------------DHTLFVKAQDGFFLVVLVYVDDILIASTTEAASAELTSQLSSFF 1143

Query: 921  TIKDLGPAKYFLGLEIVRSMEGTYLNQRKYILDILSDVGLTDCKPAPLPFPQGLKLVAQA 742
             ++DLG  K+FLG+EI R+ +G  L QRKY+LD+L+    +DCKP+ +P     KL    
Sbjct: 1144 QLRDLGEPKFFLGIEIARNADGISLCQRKYVLDLLASSDFSDCKPSSIPMEPNQKLSKDT 1203

Query: 741  GEPFSDPDQYRRLVGRLLYLNLTRADITYCVQQLSQFVNSPHTSHWDAAIHVLRYLKGCP 562
            G    D  QYRR++G+L YL LTR DI + V +L+Q+ ++P   H  A   +LRYLKG  
Sbjct: 1204 GTLLEDGKQYRRILGKLQYLCLTRPDINFAVSKLAQYSSAPTDIHLQALHKILRYLKGTI 1263

Query: 561  STGLFYPADASFDFRAFSDADWASCGDTRRSLTGFCVFFGGSLVXXXXXXXXXXXXXTAE 382
              GLFY AD +FD R FSD+DW +C DTRR +TGF +F G SLV             +AE
Sbjct: 1264 GQGLFYGADTNFDLRGFSDSDWQTCPDTRRCVTGFAIFVGNSLVSWRSKKQDVVSMSSAE 1323

Query: 381  AEYRAMSTTVCELQWLSYLARDLQLPIPTPIPLFCDNQAALHIVANPVFHERTKHLDIDC 202
            AEYRAMS    EL WL Y+    ++P   P  L+CDN+AALHI  N VFHERTKH++ DC
Sbjct: 1324 AEYRAMSVATKELIWLGYILTAFKIPFTHPAYLYCDNEAALHIANNSVFHERTKHIENDC 1383

Query: 201  HLVRNQYKSGFVLPQKVGSLDQLADLFTKPLGKQLFRSFVVKLGMKDFH 55
            H VR   ++G +    V + +QLAD  TKPL  + FR    KLG+ + +
Sbjct: 1384 HKVRECIEAGILKTIFVRTDNQLADTLTKPLYPKPFRENNSKLGLLNIY 1432


>gb|KYP65734.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1013

 Score =  853 bits (2204), Expect = 0.0
 Identities = 467/1020 (45%), Positives = 622/1020 (60%), Gaps = 24/1020 (2%)
 Frame = -3

Query: 3042 LTLYDVLLVPSFTYNLLSVAQLTHNSHLKFVFYASHCVLQDQRTEEVVAVGKAHGRLYIL 2863
            L L+DVL VPSF  NL+SV+QL ++       +  HC++    T++++   K    LY++
Sbjct: 1    LILHDVLFVPSFCVNLISVSQLINSHQCHLELHIDHCLILQNSTKKMIGTAKYQHGLYVI 60

Query: 2862 QPFSTHNSSSGFTCASTSNFHSLSCNNVLLEWHSKLGHPSVSVLEHIPCLQPFYNPSMKH 2683
               S   S    T     N  S   ++ +L WH +LGH S S    I    P    S +H
Sbjct: 61   IRDSATRSQ--LTQPFVGNTISKDSSDSVL-WHHRLGHLSNSTHRIIASQFPIV--SYQH 115

Query: 2682 IFDDCEICHKSKQPRLSFPLSTTRSGSCFDLIHVDVWGPYAKFNVSNTPYMLTLVDDYSR 2503
                C+ICH +KQ RL   +S T+S S  +L+H D+WGPY+  +V    Y LTLVDD+SR
Sbjct: 116  HDVPCDICHFAKQKRLPHFISNTKSASVIELLHADIWGPYSIPSVFGHKYFLTLVDDFSR 175

Query: 2502 ATWTYFLAHKSQVVSILESFFLMINTQFDKKVKVVRSDNGSEFVNHSCQALFHSLGIVHQ 2323
             TW   +  KS+    L +F   I TQF  K+K +R+DNGSEF+ H    LF S GI+HQ
Sbjct: 176  FTWIVMMKSKSETRQHLTNFISYIETQFQTKLKCLRTDNGSEFLMHD---LFLSKGIIHQ 232

Query: 2322 KSCVYTPQQNGVVERKHRTLLNLGRALMFQSGVPMKFWVHSLMTATYLVNRLPSVVLGWQ 2143
             SCV TPQQNGVVERKH+ +LN  RAL FQ+ +P  FW  ++  A +L+NR+PS +L  +
Sbjct: 233  GSCVETPQQNGVVERKHQHILNTARALYFQASLPKNFWNFAIQHAVHLINRIPSPLLDNK 292

Query: 2142 TPYELLYGKPPDYSTIKPFGCLAFATNVSPHKHKFEARAHRCLFVGYCPGSKGYRLFDMD 1963
            TPY+ L+ +PP    ++ FGCLA+A+ +  H+ KF+ RA + + +GY  G KGY L+D+ 
Sbjct: 293  TPYQALHQRPPILVHLRSFGCLAYASTLQAHRTKFQPRAKKSVLLGYKEGVKGYLLYDLH 352

Query: 1962 SNQFLISRDVHFIETTFPFLQHTATK----SPTPLPL-VPV--------------TEDQF 1840
            S++F +SR+V F E TFPF   + T     SPTP+ +  P+              T    
Sbjct: 353  SHEFFMSRNVFFHEFTFPFHTPSQTSLTQPSPTPITIQTPISSPYDLDNHVPPSPTSSTS 412

Query: 1839 XXXXXXXXXXXXXXXXXXXSTRLLKPPSWLNDYVTNTCTDSLPTTTITP-PVLSTPGSSS 1663
                               STR+ +PPS+L DY    C+   PT  I     +STP S S
Sbjct: 413  IPPEQPHQPLSPAPAPSRHSTRMRQPPSYLKDY---HCSLLAPTGRINSFSGISTPHSIS 469

Query: 1662 TISTLPSFVSPPLSSTYVSFLANITNQQEPRSFTQASKDVNWVRAMHKELEALEKNGTWE 1483
            +  T   F SP    +Y  F  +++   EP ++TQASK   W+ AM  EL AL+ N TW 
Sbjct: 470  STLTY-DFCSP----SYKQFCLSVSTNFEPHTYTQASKYDCWIMAMKTELAALDMNQTWS 524

Query: 1482 LTALPQGKKAIGSKWVYKLKLLPDGSIDRYKARLVAKGYHQVYGLDYLDNFSPVARLVTV 1303
            +  LP GK+ IG KWVYK+K L DGSI+RYKARLVAKGY Q  GLDYLD +SPVA+L TV
Sbjct: 525  IVDLPSGKRPIGCKWVYKIKYLSDGSIERYKARLVAKGYSQTEGLDYLDTYSPVAKLTTV 584

Query: 1302 RMLIAVATMKGWDLEQLDINNAFLHGYLNEDIYMTPPEGYSKAKPG----QVCHLKRSLY 1135
            R+L+A+  +KGW LEQLD+NNAFLHG L+E++YMT P G S         +VC L +S+Y
Sbjct: 585  RVLLALTAIKGWFLEQLDVNNAFLHGDLHEEVYMTLPPGLSVPSSSNTAPKVCKLHKSIY 644

Query: 1134 GLKQASRQWNLEFCQKLVAYGMVQSQHDHCLFIKASQSSFLALIIYVDDVLVTGSNSHDI 955
            GLKQASRQW  +    L++ G   S  DH LFIK+S S F AL++YVDD+++ G++  +I
Sbjct: 645  GLKQASRQWYSKLSSALISMGYSPSTADHSLFIKSSSSHFTALLVYVDDIILAGNDKPEI 704

Query: 954  AALKTYLDDMFTIKDLGPAKYFLGLEIVRSMEGTYLNQRKYILDILSDVGLTDCKPAPLP 775
              +K  L   F IKDLG  +YFLGLEI RS +G  LNQRKY L+IL DVG    KP+  P
Sbjct: 705  DFIKAQLHKCFKIKDLGNLRYFLGLEIARSNKGILLNQRKYTLEILEDVGFLAAKPSSTP 764

Query: 774  FPQGLKLVAQAGEPFSDPDQYRRLVGRLLYLNLTRADITYCVQQLSQFVNSPHTSHWDAA 595
            F   LKL +  G P++D   YRRL+GRLLYL  TR DI+Y VQQLSQFV+ P   H+ AA
Sbjct: 765  FNPSLKLHSDHGSPYNDETAYRRLIGRLLYLTTTRPDISYVVQQLSQFVSKPLDIHYQAA 824

Query: 594  IHVLRYLKGCPSTGLFYPADASFDFRAFSDADWASCGDTRRSLTGFCVFFGGSLVXXXXX 415
              +LRYLKG    GLFY + AS    AF+D+DWASC  +R+S+TGFCVF G SL+     
Sbjct: 825  TRILRYLKGSHGRGLFYSSSASLKLSAFADSDWASCSISRKSITGFCVFLGSSLISWRSK 884

Query: 414  XXXXXXXXTAEAEYRAMSTTVCELQWLSYLARDLQLPIPTPIPLFCDNQAALHIVANPVF 235
                    ++EAEYRA+++  CELQWL YL  DL+  +  P  +FCDN++A+++  NP F
Sbjct: 885  KQSTISRSSSEAEYRALASLTCELQWLHYLFNDLKTSLNFPTSVFCDNKSAIYLAHNPTF 944

Query: 234  HERTKHLDIDCHLVRNQYKSGFVLPQKVGSLDQLADLFTKPLGKQLFRSFVVKLGMKDFH 55
            HERTKH++IDCH++R + +S  +    V S  QLAD FTKPL    F SFV KLG+ D H
Sbjct: 945  HERTKHIEIDCHVIREKIQSRLLHLLPVPSSSQLADAFTKPLHATSFNSFVSKLGLYDVH 1004


>gb|KYP55668.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1136

 Score =  853 bits (2205), Expect = 0.0
 Identities = 480/1179 (40%), Positives = 674/1179 (57%), Gaps = 11/1179 (0%)
 Frame = -3

Query: 3558 CEHCKMTGHEITECFKLHGYPEWFKQPREQRGRGVANFVGTPADSNMTVDISGKGGSAGD 3379
            C HC  TGH I  C++ HG+P   K P   +   V + V      +  V  S +   + D
Sbjct: 1    CTHCGKTGHTIEVCYQKHGFPPGSK-PLSDKTASVNHTV----TGDCKVTESTQSLESQD 55

Query: 3378 MSTLIQQEIAKFMATHASKPLTEKTEIMNMDFAHFVDYAGSNISSDTYCALSTFDHSVKD 3199
            +    QQ  A       S   T                + S  S    C+      S   
Sbjct: 56   VRFTPQQYQALLALIQQSTTGT----------------SASCTSFPIVCSAI----STPS 95

Query: 3198 CWIIDTGASRHMCYNKSLLTNLVPLPSSTIIFLPDGSTKQVTHSGQVTLSSSLTLYDVLL 3019
             WI+D+GA+ H+    S  ++  P+ +   + LP G     THSG V  ++S  L DVL 
Sbjct: 96   SWILDSGATDHVSSTLSHFSSFSPI-NPIDVKLPTGQHVSATHSGIVKFTNSFYLVDVLY 154

Query: 3018 VPSFTYNLLSVAQLTHNSHLKFVFYASHCVLQDQRTEEVVAVGKAHGRLYILQPFSTHNS 2839
            +P FTYNL+S+++L  +   +F+F    C++Q+  T + +     +G LY     + HN 
Sbjct: 155  IPDFTYNLISISKLVSSLSCQFIFDRHSCIIQETNTMKKIGTVDVNGGLYSFTANNIHNP 214

Query: 2838 SSGFTCASTSNFHSLSCNNVLLEWHSKLGHPSVSVLEHIPCLQPFYNPSMKHIFDDCEIC 2659
            S+          H       +  WH ++GH S   L+ +    PF +         C  C
Sbjct: 215  STNSIIV-----HPKCSIQPIDLWHFRMGHLSQERLQLMKQSFPFLSVDKSF---SCNTC 266

Query: 2658 HKSKQPRLSFPLSTTRSGSCFDLIHVDVWGPYAKFNVSNTPYMLTLVDDYSRATWTYFLA 2479
            H  KQ +LSFPLS + +   FDL+H+D+WGP    ++    Y L +VDD++R TW + + 
Sbjct: 267  HHDKQKKLSFPLSHSYALQPFDLLHMDIWGPCPVTSMHGHKYFLAIVDDHTRFTWLFLMQ 326

Query: 2478 HKSQVVSILESFFLMINTQFDKKVKVVRSDNGSEFVNHSCQALFHSLGIVHQKSCVYTPQ 2299
            +KS+    + +F   + TQFDK VKV+R+DNG EF   S    F S GI+HQ +CV TPQ
Sbjct: 327  NKSETRQHIINFINQVETQFDKNVKVIRTDNGLEF---SMTQYFSSKGIIHQTTCVETPQ 383

Query: 2298 QNGVVERKHRTLLNLGRALMFQSGVPMKFWVHSLMTATYLVNRLPSVVLGWQTPYELLYG 2119
            QNG+VERKH+ LLN+ R+L+FQ+ +P  FW  +L  A +L+N +P+  L   +P+E LYG
Sbjct: 384  QNGIVERKHQHLLNVTRSLLFQANLPSIFWCFALKHAAFLINCIPTPFLHNISPFEKLYG 443

Query: 2118 KPPDYSTIKPFGCLAFATNVSPHKHKFEARAHRCLFVGYCPGSKGYRLFDMDSNQFLISR 1939
             P D S ++ FGCL +++ ++ H+ K + RAH C+F+G+ P +KGY L ++ ++  L+S+
Sbjct: 444  HPCDISILRVFGCLCYSSIITSHRTKLDPRAHPCIFLGFKPHTKGYLLVNLHTHGLLVSQ 503

Query: 1938 DVHFIETTFPFL---QHTATKSPTPLPLVPVTEDQFXXXXXXXXXXXXXXXXXXXS---- 1780
            +V F E  FP        +  SP P+P        F                        
Sbjct: 504  NVIFHEDHFPSFTKPNSPSFSSPVPIPYNYADYPSFPSSSIVESSEPPPPDQHSSPPPLR 563

Query: 1779 --TRLLKPPSWLNDYV-TNTCTDSLPTTTITPPVLSTPGSSSTISTLPSFVS-PPLSSTY 1612
              TR  +PP++L D+    T T    +T I  P             L SF+S   LS ++
Sbjct: 564  RSTRPRRPPTYLQDFHGAFTSTGPHSSTGIRHP-------------LHSFISYDRLSPSF 610

Query: 1611 VSFLANITNQQEPRSFTQASKDVNWVRAMHKELEALEKNGTWELTALPQGKKAIGSKWVY 1432
              ++ +I++  +P++F +ASK  +W++AMH+E+ ALE N TW LT LP  K AIG +WVY
Sbjct: 611  HHYVFSISSVTKPKNFVEASKSDSWLKAMHEEISALEANNTWVLTTLPPHKTAIGCRWVY 670

Query: 1431 KLKLLPDGSIDRYKARLVAKGYHQVYGLDYLDNFSPVARLVTVRMLIAVATMKGWDLEQL 1252
            K+K   DGSIDRYKARLVAKGY Q+ GLD+ D FSPVA+L TVR+LI++A +    L+QL
Sbjct: 671  KVKHKADGSIDRYKARLVAKGYTQMEGLDFFDTFSPVAKLTTVRLLISLAAIHNCHLKQL 730

Query: 1251 DINNAFLHGYLNEDIYMTPPEGYSKAKPGQVCHLKRSLYGLKQASRQWNLEFCQKLVAYG 1072
            D+NN+FLHG LNE++YM  P G + + PGQVC L+RSLYGLKQASRQW       L+ +G
Sbjct: 731  DVNNSFLHGDLNEEVYMQLPPGITPSFPGQVCRLQRSLYGLKQASRQWYARLSSFLIQHG 790

Query: 1071 MVQSQHDHCLFIKASQSSFLALIIYVDDVLVTGSNSHDIAALKTYLDDMFTIKDLGPAKY 892
             V S  DH LF+K S +   A++IYVDD+++ G++  +I  L + L + F IKDLG  KY
Sbjct: 791  YVPSPSDHSLFLKCSPAITTAILIYVDDIVLAGNDLTEIHHLTSLLHNTFQIKDLGNLKY 850

Query: 891  FLGLEIVRSMEGTYLNQRKYILDILSDVGLTDCKPAPLPFPQGLKLVAQAGEPFSDPDQY 712
            FLGLE+ R+  G +L QRKY LD+LSD G+   KP   P      L A +G PF+D   Y
Sbjct: 851  FLGLEVARNHTGIHLCQRKYTLDLLSDTGMLASKPVSTPMDYSTHLSASSGTPFTDTAAY 910

Query: 711  RRLVGRLLYLNLTRADITYCVQQLSQFVNSPHTSHWDAAIHVLRYLKGCPSTGLFYPADA 532
            RRLVGRL+YL  TR  I Y VQQLSQFV++P T+H  A   +L YLKG P +G+F   ++
Sbjct: 911  RRLVGRLIYLPNTRPAIAYAVQQLSQFVSNPPTAHRQALFRILCYLKGTPGSGIFLSVNS 970

Query: 531  SFDFRAFSDADWASCGDTRRSLTGFCVFFGGSLVXXXXXXXXXXXXXTAEAEYRAMSTTV 352
            S   RAFSD DWA C DTRRS+TGF V+ G SL+             ++EAEYRA++TT 
Sbjct: 971  SVQLRAFSDYDWAGCPDTRRSITGFAVYLGDSLISWKSKKQITVSRSSSEAEYRALATTT 1030

Query: 351  CELQWLSYLARDLQLPIPTPIPLFCDNQAALHIVANPVFHERTKHLDIDCHLVRNQYKSG 172
            CELQWLSYL +D  + +  P  L+CDNQ AL I +NP+FHERTKH++IDCH+VR++  +G
Sbjct: 1031 CELQWLSYLLKDFHIDLIRPSILYCDNQFALQIASNPIFHERTKHIEIDCHIVRDKVSTG 1090

Query: 171  FVLPQKVGSLDQLADLFTKPLGKQLFRSFVVKLGMKDFH 55
             +    V S  QLAD+ TKPL   +F S   KLGM + H
Sbjct: 1091 LLKLLPVSSSLQLADILTKPLSPFVFHSHYSKLGMLNIH 1129


>emb|CAN82526.1| hypothetical protein VITISV_028058 [Vitis vinifera]
          Length = 1125

 Score =  833 bits (2153), Expect = 0.0
 Identities = 460/1063 (43%), Positives = 625/1063 (58%), Gaps = 17/1063 (1%)
 Frame = -3

Query: 3192 IIDTGASRHMCYNKSLLTNLVPLPSSTIIFLPDGSTKQVTHSGQVTLSSSLTLYDVLLVP 3013
            IID+GA+ H+  + +LL N         + +P G    +T  G + L+S+ TL +VL VP
Sbjct: 110  IIDSGATDHITSSPTLLVNSSKNTFLPPVAMPSGEQAPITSIGNLPLNSAATLKNVLGVP 169

Query: 3012 SFTYNLLSVAQLTHNSHLKFVFYASHCVLQDQRTEEVVAVGKAHGRLYILQPFSTHNSSS 2833
            SF  +L+SV+++T + +    F+   C+LQD  T   + +G+    LY L   ++    +
Sbjct: 170  SFKVDLMSVSRVTKDLNCSVTFFPHWCILQDLTTRTTIGLGEQRDGLYYLVALASEKPKT 229

Query: 2832 GFTCASTSNFHSLSCN--NVLLEWHSKLGHPSVSVLEHIPC-LQPFYNPSMKHIFDDCEI 2662
                A+T++  S S    +    WH +LGH S S L+ +   L  F+  S     + C++
Sbjct: 230  QTPSAATTSCRSPSSQVTSSTALWHRRLGHLSSSRLDFMAKHLLNFHFQSN----NACDV 285

Query: 2661 CHKSKQPRLSFPLSTTRSGSCFDLIHVDVWGPYAKFNVSNTPYMLTLVDDYSRATWTYFL 2482
            C  +KQ +L F +S+  S   F+LIH D+WGPY   ++S   Y LT+VDDYSR T  +F+
Sbjct: 286  CALAKQRQLPFSVSSISSVRPFELIHCDIWGPYKIASLSGAKYFLTIVDDYSRFTXVFFM 345

Query: 2481 AHKSQVVSILESFFLMINTQFDKKVKVVRSDNGSEFVNHSCQALFHSLGIVHQKSCVYTP 2302
             HKS+   +L +FF  + TQF   +  +R DNG EF   S +  F   G  +Q SCVYTP
Sbjct: 346  HHKSETQHLLVNFFSFVQTQFHVSIANIRVDNGGEFF--SXREFFKQKGTTYQHSCVYTP 403

Query: 2301 QQNGVVERKHRTLLNLGRALMFQSGVPMKFWVHSLMTATYLVNRLPSVVLGWQTPYELLY 2122
            QQNGVVERKHR +L   RA  FQ+ +P+ FW   + TA +++NRLP+ +L  QTP+E LY
Sbjct: 404  QQNGVVERKHRHILESARAFXFQAHLPLPFWAECVSTAVHIINRLPTPLLSRQTPFERLY 463

Query: 2121 GKPPDYSTIKPFGCLAFATNVSPHKHKFEARAHRCLFVGYCPGSKGYRLFDMDSNQFLIS 1942
            GK P YS I+ FGCLA+ATNV    HKF  RA RC+F+GY  G K Y+L+D+D++Q   S
Sbjct: 464  GKLPSYSHIRVFGCLAYATNVHV-PHKFAPRAKRCIFLGYPVGQKAYKLYDLDTHQMFTS 522

Query: 1941 RDVHFIETTFP-------------FLQHTATKSPTPLPLVPVTEDQFXXXXXXXXXXXXX 1801
            RDV F ET FP             FL      SP P P++  ++                
Sbjct: 523  RDVVFHETIFPYESIPSPSSNSDPFLLSHHLASPPPEPILRRSQ---------------- 566

Query: 1800 XXXXXXSTRLLKPPSWLNDYVTNTCTDSLPTTTITPPVLSTPGSSSTISTLPSFVS-PPL 1624
                    R   PP  L DYV N  T    +    PP+ S+P    T   L +FVS    
Sbjct: 567  --------RPHHPPMALRDYVCNQVT----SPNHLPPLSSSP-QKGTRYPLCNFVSYHRY 613

Query: 1623 SSTYVSFLANITNQQEPRSFTQASKDVNWVRAMHKELEALEKNGTWELTALPQGKKAIGS 1444
            S  + SF A ++   EP S+ +A+   +W  AM  EL  LE N TW LT+LP GKK IG 
Sbjct: 614  SPQHRSFTAAVSQDIEPTSYAEATSHSHWQEAMQSELATLEANHTWSLTSLPPGKKPIGC 673

Query: 1443 KWVYKLKLLPDGSIDRYKARLVAKGYHQVYGLDYLDNFSPVARLVTVRMLIAVATMKGWD 1264
            +WVYK+K   DG+I+R+KARLVAKGY Q+ G+DY D FSP A+++ VR L+A+A  + W 
Sbjct: 674  RWVYKIKXHSDGTIERFKARLVAKGYTQLEGIDYHDTFSPTAKMIXVRCLLALAAAQNWS 733

Query: 1263 LEQLDINNAFLHGYLNEDIYMTPPEGYSKAKPGQVCHLKRSLYGLKQASRQWNLEFCQKL 1084
            L QLD              +M+PP    +     VCHL +SLYGLKQASRQW  +F   +
Sbjct: 734  LHQLDK-------------FMSPPPSLRRQGENLVCHLHKSLYGLKQASRQWFAKFSTAI 780

Query: 1083 VAYGMVQSQHDHCLFIKASQSSFLALIIYVDDVLVTGSNSHDIAALKTYLDDMFTIKDLG 904
             A G +QS+ D+ LF      SF AL+IYVDD+L+TG++ + I ALK +L   F IKDLG
Sbjct: 781  QAVGFIQSKADYSLFTCRKGKSFTALLIYVDDILITGNDVNAIVALKQFLHSHFRIKDLG 840

Query: 903  PAKYFLGLEIVRSMEGTYLNQRKYILDILSDVGLTDCKPAPLPFPQGLKLVAQAGEPFSD 724
              KYFLG+E+ RS +G  ++QRKY L+IL D G    KP   P  Q  KL + +GE    
Sbjct: 841  DLKYFLGIEVSRSKKGISISQRKYTLEILKDGGFLGAKPVNFPMEQNTKL-SDSGELLKG 899

Query: 723  PDQYRRLVGRLLYLNLTRADITYCVQQLSQFVNSPHTSHWDAAIHVLRYLKGCPSTGLFY 544
            P QYRRLVGRL+YL +TR DITY V  LS+F+++P   H +AA+ VLRYLK  P  GLF+
Sbjct: 900  PSQYRRLVGRLIYLTITRPDITYSVHVLSRFMHAPRRPHMEAALRVLRYLKNSPGQGLFF 959

Query: 543  PADASFDFRAFSDADWASCGDTRRSLTGFCVFFGGSLVXXXXXXXXXXXXXTAEAEYRAM 364
            P+      RAFSD DWA C  +RRS TG+CVF G SL+             + EAEYRAM
Sbjct: 960  PSQNDLSLRAFSDXDWAGCPISRRSXTGYCVFLGSSLISWRTKRQKTVSLSSXEAEYRAM 1019

Query: 363  STTVCELQWLSYLARDLQLPIPTPIPLFCDNQAALHIVANPVFHERTKHLDIDCHLVRNQ 184
            + T CEL WL  L +DL++  P P  L+CDN AALHI  NPVFHERT+H+++DCH +R++
Sbjct: 1020 AGTCCELSWLRSLLKDLRILHPKPALLYCDNTAALHIAVNPVFHERTRHIEMDCHFIRDK 1079

Query: 183  YKSGFVLPQKVGSLDQLADLFTKPLGKQLFRSFVVKLGMKDFH 55
             + G V+ + + S DQ AD+FTKPLGK+ F + + KLG+ D H
Sbjct: 1080 IQDGSVVTKHIASTDQXADVFTKPLGKETFSTMIHKLGVLDIH 1122


>gb|KYP34298.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1002

 Score =  822 bits (2123), Expect = 0.0
 Identities = 438/1018 (43%), Positives = 607/1018 (59%), Gaps = 14/1018 (1%)
 Frame = -3

Query: 3066 GQVTLSSSLTLYDVLLVPSFTYNLLSVAQLTHNSHLKFVFYASHCVLQDQRTEEVVAVGK 2887
            G +  S    L DVL +P F +NL+SV++L      +  F    C +QD ++ +++   K
Sbjct: 1    GSIFFSEDFFLADVLYIPEFNFNLVSVSRLIRQLGCRLTFSGDLCDIQDSQSMKMIGAAK 60

Query: 2886 AHGRLYILQPFSTHNSSSGFTCASTSNFHSLSCNNVLLEWHSKLGHPSVSVLEHIPCLQP 2707
             +  LY+L               S +NFHS   N++   WH +LGH +   L+ +    P
Sbjct: 61   HNMGLYVLD----WKPKVCLYLHSVNNFHSYD-NDL---WHIRLGHLAHEKLQAMKSNFP 112

Query: 2706 FYNPSMKHIFDDCEICHKSKQPRLSFPLSTTRSGSCFDLIHVDVWGPYAKFNVSNTPYML 2527
            F +   K   D C +C+ +KQ +L F  S T++   FDL+HVD+WGP    ++    + L
Sbjct: 113  FID--CKKNKDPCNVCYLAKQRQLPFSHSVTKADEIFDLLHVDIWGPTTPASIFGHKFFL 170

Query: 2526 TLVDDYSRATWTYFLAHKSQVVSILESFFLMINTQFDKKVKVVRSDNGSEFVNHSCQALF 2347
            T+VDD SR TW YF+ HKS+V   L SF  +I  QF KKVK VRSDNG EF+    +  +
Sbjct: 171  TIVDDKSRHTWVYFMKHKSEVADHLSSFITLIENQFGKKVKCVRSDNGPEFL---LKNFY 227

Query: 2346 HSLGIVHQKSCVYTPQQNGVVERKHRTLLNLGRALMFQSGVPMKFWVHSLMTATYLVNRL 2167
            H  GI+HQ SCV TPQQNG+VERKH+ ++ + RAL+ QS +P  FW +++  A +L+NR 
Sbjct: 228  HEKGILHQTSCVETPQQNGIVERKHQHIMTVARALVMQSNLPKSFWFYAVSHAVFLINRQ 287

Query: 2166 PSVVLGWQTPYELLYGKPPDYSTIKPFGCLAFATNVSPHKHKFEARAHRCLFVGYCPGSK 1987
            PS  L  + PYE++Y   PD + IK FGCLA+AT +  ++ KF+ R  RC+F+G+ P  K
Sbjct: 288  PSSFLENKIPYEIIYNALPDLAGIKVFGCLAYATTLHHNRKKFDPRGRRCVFLGFKPQVK 347

Query: 1986 GYRLFDMDSNQFLISRDVHFIETTFPFLQHTAT-----------KSPTPLPLVPVTEDQF 1840
            G  L+D++S +  +SR V + E  FPFL  +             + P P+   P      
Sbjct: 348  GSILYDLNSRETFLSRHVEYFEHIFPFLPTSPLDLTQTISLPRHQPPLPIDTDPTPLSTN 407

Query: 1839 XXXXXXXXXXXXXXXXXXXSTRLLKPPSWLNDYVTNTCTDSLPTTTITPPVLSTPGSSST 1660
                               STR  K PS+L+DY  +T   +  + TI+ P+ S     S 
Sbjct: 408  TTPTSSPVSVVPPPPFVRKSTRPRKLPSYLHDY-HHTLLTTHNSPTISQPLYSIHNHISY 466

Query: 1659 ISTLPSFVSPPLSSTYVSFLANITNQQEPRSFTQASKDVNWVRAMHKELEALEKNGTWEL 1480
             +  PS           +F  +I++ +EP S+ +A +D +W  A+  EL ALEKN TW L
Sbjct: 467  SNLSPS---------QKAFSLSISSIKEPNSYVEAIQDESWKTAIQTELTALEKNNTWIL 517

Query: 1479 TALPQGKKAIGSKWVYKLKLLPDGSIDRYKARLVAKGYHQVYGLDYLDNFSPVARLVTVR 1300
            T LP  K+ +G KWV+KLK   DG+I+R+KARLVAKGY Q   LDYLD FSPV ++ TVR
Sbjct: 518  TPLPPNKQVVGCKWVFKLKFNSDGTIERHKARLVAKGYTQTETLDYLDTFSPVVKMTTVR 577

Query: 1299 MLIAVATMKGWDLEQLDINNAFLHGYLNEDIYMTPPEGYSKAKPGQ---VCHLKRSLYGL 1129
             L+AVAT K W + QLD+N  FLHG L+E++YMTPP G +   P Q   VC L +SLYGL
Sbjct: 578  TLLAVATAKNWHIHQLDVNTTFLHGDLHEEVYMTPPPGLT-VSPHQSNCVCKLVKSLYGL 636

Query: 1128 KQASRQWNLEFCQKLVAYGMVQSQHDHCLFIKASQSSFLALIIYVDDVLVTGSNSHDIAA 949
            KQASRQWN +    L+  G  QS  D+ LF K   + F A+++YVDD+++ G++  +I  
Sbjct: 637  KQASRQWNAKLTSVLIDSGFKQSMADYSLFTKQFGAKFTAILVYVDDLVLAGNDPTEINY 696

Query: 948  LKTYLDDMFTIKDLGPAKYFLGLEIVRSMEGTYLNQRKYILDILSDVGLTDCKPAPLPFP 769
            +K+ LD  FTIKDLG  KYFLG+E+ RS  G  L QRKY LD++ D GL   KP   P  
Sbjct: 697  IKSLLDQKFTIKDLGQLKYFLGMEVARSSTGIALYQRKYALDLIEDTGLLASKPCKSPMD 756

Query: 768  QGLKLVAQAGEPFSDPDQYRRLVGRLLYLNLTRADITYCVQQLSQFVNSPHTSHWDAAIH 589
              +KL    G P +DP QYRRL+GRL+YL  TRADI++ V  LSQF++ P   H+ AA+ 
Sbjct: 757  HSVKLHKTVGTPLTDPTQYRRLLGRLIYLTNTRADISFSVNHLSQFMDQPTDVHYQAALR 816

Query: 588  VLRYLKGCPSTGLFYPADASFDFRAFSDADWASCGDTRRSLTGFCVFFGGSLVXXXXXXX 409
            +L+Y+K  P  GLF+P+ +    + +SD+DWASC DTRRS+TGF  F G +L+       
Sbjct: 817  ILKYVKNAPGKGLFFPSSSDLTLKGYSDSDWASCSDTRRSVTGFSFFLGPALISWKSKKQ 876

Query: 408  XXXXXXTAEAEYRAMSTTVCELQWLSYLARDLQLPIPTPIPLFCDNQAALHIVANPVFHE 229
                  +AEAEYRA++ + CE QWLSYL  D  L    PI LFCDNQ+ALHI +NPVFHE
Sbjct: 877  ATVSKSSAEAEYRALAQSTCEAQWLSYLLHDFGLHSFHPIVLFCDNQSALHIASNPVFHE 936

Query: 228  RTKHLDIDCHLVRNQYKSGFVLPQKVGSLDQLADLFTKPLGKQLFRSFVVKLGMKDFH 55
            RTK++++DCH+VR + + G +    + + DQLAD+FTK L  + F   + KLGM D H
Sbjct: 937  RTKNIELDCHIVREKLQVGLIHLLPISTADQLADVFTKALSLRPFEQIIFKLGMFDIH 994


>gb|KYP37906.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1097

 Score =  820 bits (2118), Expect = 0.0
 Identities = 459/1130 (40%), Positives = 637/1130 (56%), Gaps = 15/1130 (1%)
 Frame = -3

Query: 3558 CEHCKMTGHEITECFKLHGYPEWFKQPREQRGRGVANFVGTPADSNMTVDISGKGGSAGD 3379
            C +C   GH I  C+K HGYP  FK              G P  +    DIS   G  G+
Sbjct: 1    CTYCNKLGHTIETCYKKHGYPPHFKGGSAHNCYNEECDEGNPVLNESAGDISK--GEKGE 58

Query: 3378 MSTLIQQEIAKFMATHASKPLTEKTEIMNMDFAHFVDYAGSNISSDTYCALSTFDHSVKD 3199
             S     E  K +    ++  +  T        H   Y   + S      + T  +++ +
Sbjct: 59   NSLGFTAEQHKALLGMLTQQQSHHTA------NHITTYELPSTSDPQSGIVYTVSNNMNN 112

Query: 3198 -CWIIDTGASRHMCYNKSLLTNLVPLPSSTIIFLPDGSTKQVTHSGQVTLSSSLTLYDVL 3022
              WI+D+GA+ H+C +  L   L  +     I LPDG        G +  S    L DVL
Sbjct: 113  NIWILDSGATDHICRSIKLFQCLRRI-KPVKIHLPDGKCVTTNLCGSIFFSEDFFLADVL 171

Query: 3021 LVPSFTYNLLSVAQLTHNSHLKFVFYASHCVLQDQRTEEVVAVGKAHGRLYILQPFSTHN 2842
             +P F +NL+SV++L      +  F    C +QD ++ +++   K +  LY+L       
Sbjct: 172  YIPEFNFNLVSVSRLIRQLGCRLTFSGDLCDIQDSQSMKMIGAAKHNMGLYVLD----WK 227

Query: 2841 SSSGFTCASTSNFHSLSCNNVLLEWHSKLGHPSVSVLEHIPCLQPFYNPSMKHIFDDCEI 2662
                    S +NFHS   N++   WH +LGH +   L+ +    PF +   K   D C +
Sbjct: 228  PKVCLYLHSINNFHSYD-NDL---WHIRLGHLAHEKLQAMKSNFPFID--CKKNKDPCNV 281

Query: 2661 CHKSKQPRLSFPLSTTRSGSCFDLIHVDVWGPYAKFNVSNTPYMLTLVDDYSRATWTYFL 2482
            C+ +KQ +L F  S T++   FDL+HVD+WGP    ++    + LT+VDD SR TW YF+
Sbjct: 282  CYLAKQRQLPFSHSVTKADEIFDLLHVDIWGPTTPASIFGHRFFLTIVDDKSRHTWVYFM 341

Query: 2481 AHKSQVVSILESFFLMINTQFDKKVKVVRSDNGSEFVNHSCQALFHSLGIVHQKSCVYTP 2302
             HKS+V   L SF  +I  QF KKVK VRSDNG EF+    +  +H  GI+HQ SCV TP
Sbjct: 342  KHKSEVADHLSSFITLIENQFGKKVKCVRSDNGPEFL---LKNFYHEKGILHQTSCVETP 398

Query: 2301 QQNGVVERKHRTLLNLGRALMFQSGVPMKFWVHSLMTATYLVNRLPSVVLGWQTPYELLY 2122
            QQNG+VERKH+ ++ + RAL+ QS +P  FW +++  A +L+NR PS  L  + PYE++Y
Sbjct: 399  QQNGIVERKHQHIMTVARALVMQSNLPKSFWFYAVSHAVFLINRQPSSFLENKIPYEIIY 458

Query: 2121 GKPPDYSTIKPFGCLAFATNVSPHKHKFEARAHRCLFVGYCPGSKGYRLFDMDSNQFLIS 1942
               PD + IK FGCLA+AT +  ++ KF+ R  RC+F+G+ P  KG  L+D++S +  +S
Sbjct: 459  NALPDLAGIKVFGCLAYATTLHHNRKKFDPRGRRCVFLGFKPQVKGSILYDLNSRETFLS 518

Query: 1941 RDVHFIETTFPFLQHTAT-----------KSPTPLPLVPVTEDQFXXXXXXXXXXXXXXX 1795
            R V + E  FPFL  +             + P P+   P                     
Sbjct: 519  RHVEYFEHIFPFLPTSPLDLTQTISLPRHQPPLPIDTDPTPLSTNTTPTSSPVSVVPPPP 578

Query: 1794 XXXXSTRLLKPPSWLNDYVTNTCTDSLPTTTITPPVLSTPGSSSTISTLPSFVSPPLSST 1615
                STR  K PS+L+DY  +T   +  + TI+ P+ S     S  +  PS         
Sbjct: 579  FVQKSTRPRKLPSYLHDY-HHTLLTTHNSPTISQPLYSIHNHISYSNLSPS--------- 628

Query: 1614 YVSFLANITNQQEPRSFTQASKDVNWVRAMHKELEALEKNGTWELTALPQGKKAIGSKWV 1435
              +F  +I++ +EP S+ +A +D +W  A+  EL ALEKN TW LT LP  K+ +G KWV
Sbjct: 629  QKAFSLSISSIKEPNSYVEAIQDESWKTAIQTELTALEKNNTWILTPLPPNKQVVGCKWV 688

Query: 1434 YKLKLLPDGSIDRYKARLVAKGYHQVYGLDYLDNFSPVARLVTVRMLIAVATMKGWDLEQ 1255
            +KLK   DG+I+R+KARLVAKGY Q  GLDYLD FSPV ++ TVR L+AVAT K W + Q
Sbjct: 689  FKLKFNSDGTIERHKARLVAKGYTQTEGLDYLDTFSPVVKMTTVRTLLAVATAKNWHIHQ 748

Query: 1254 LDINNAFLHGYLNEDIYMTPPEGYSKAKPGQ---VCHLKRSLYGLKQASRQWNLEFCQKL 1084
            LD+N  FLHG L+E++YMTPP G +   P Q   VC L +SLYGLKQASRQWN +    L
Sbjct: 749  LDVNTTFLHGDLHEEVYMTPPPGLT-VSPHQSNCVCKLVKSLYGLKQASRQWNAKLTSVL 807

Query: 1083 VAYGMVQSQHDHCLFIKASQSSFLALIIYVDDVLVTGSNSHDIAALKTYLDDMFTIKDLG 904
            +  G  QS  D+ LF K   + F A+++YVDD+++ G++  +I  +K+ LD  FTIKDLG
Sbjct: 808  IDSGFKQSMADYSLFTKQFGAKFTAILVYVDDLVLAGNDPTEINYIKSLLDQKFTIKDLG 867

Query: 903  PAKYFLGLEIVRSMEGTYLNQRKYILDILSDVGLTDCKPAPLPFPQGLKLVAQAGEPFSD 724
              KYFLG+E+ RS  G  L QRKY LD++ D GL   KP   P    +KL    G P +D
Sbjct: 868  QLKYFLGMEVARSSTGIALYQRKYALDLIEDTGLLASKPCKSPMDHSVKLHKTVGTPLTD 927

Query: 723  PDQYRRLVGRLLYLNLTRADITYCVQQLSQFVNSPHTSHWDAAIHVLRYLKGCPSTGLFY 544
            P QYRRL+GRL+YL  TRADI++ V  LSQF++ P   H+ AA+ +L+Y+K  P  GLF+
Sbjct: 928  PTQYRRLLGRLIYLTNTRADISFSVNHLSQFMDQPTDVHYQAALRILKYVKNAPGKGLFF 987

Query: 543  PADASFDFRAFSDADWASCGDTRRSLTGFCVFFGGSLVXXXXXXXXXXXXXTAEAEYRAM 364
            P+ +    + +SD+DWASC DTRRS+TGF  F G +L+             +AEAEYRA+
Sbjct: 988  PSSSDLTLKGYSDSDWASCSDTRRSVTGFSFFLGPALISWKSKKQATVSKSSAEAEYRAL 1047

Query: 363  STTVCELQWLSYLARDLQLPIPTPIPLFCDNQAALHIVANPVFHERTKHL 214
            + + CE QW+SYL  D  L    PI LFCDNQ+ALHI +NPVFHERTKH+
Sbjct: 1048 AQSTCEAQWISYLLHDFGLHNFHPIVLFCDNQSALHIASNPVFHERTKHI 1097


>gb|KYP36109.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1115

 Score =  811 bits (2096), Expect = 0.0
 Identities = 448/1094 (40%), Positives = 647/1094 (59%), Gaps = 19/1094 (1%)
 Frame = -3

Query: 3258 SNISSDTYCALSTFDHSVKDCWIIDTGASRHMCYNKSLL---TNLVPLPSSTIIFLPDGS 3088
            S  S +T   L+   H+    WIID+GA+ H+  +  L    + + PL     I LP+GS
Sbjct: 40   SIFSINTTHTLNNLSHTTP--WIIDSGATDHITTSIDLFFKYSEIKPLN----INLPNGS 93

Query: 3087 TKQVTHSGQVTLSSSLTLYDVLLVPSFTYNLLSVAQLTHNSHLKFVFYASH----CVLQD 2920
              Q   SG + LS    ++DVL VP+F++NLLS+ +L   +  + +F        C +QD
Sbjct: 94   IVQAHFSGSIQLSPDFVIHDVLFVPNFSFNLLSLPKLLLTAPCRVIFSNQFSNILCQIQD 153

Query: 2919 QRTEEVVAVGKAHGRLYILQPFSTHNSSSGFTCASTSNFHSLSCNNVLLEWHSKLGHPSV 2740
              T +++        L+ L       SS+    A+  N  +L        WH +LGH S 
Sbjct: 154  MNTLKMIGSANLKEGLFHLDIGKERRSSTNNATATPINNSNL--------WHFRLGHLSS 205

Query: 2739 SVLEHIPCLQPFYNPSMKHIFDDCEICHKSKQPRLSFPLSTTRSGSCFDLIHVDVWGPYA 2560
            + L  +    PF +   KH  + C++CH +KQ +LS+  S++R    FDLIH+D+WGP++
Sbjct: 206  NRLNVLNQQFPFIS---KHSNEVCDVCHFAKQKKLSYSPSSSRVSKIFDLIHMDIWGPFS 262

Query: 2559 KFNVSNTPYMLTLVDDYSRATWTYFLAHKSQVVSILESFFLMINTQFDKKVKVVRSDNGS 2380
            K ++    Y LT++DD+SR TW   L  KS+V + + +F  ++  Q++ KVK +RSDNG 
Sbjct: 263  KASIHGHKYFLTILDDFSRYTWVVLLKSKSEVKTHVHNFINLVENQYETKVKCIRSDNGP 322

Query: 2379 EFVNHSCQALFHSLGIVHQKSCVYTPQQNGVVERKHRTLLNLGRALMFQSGVPMKFWVHS 2200
            EF     +  F+S GI+HQ SCVYTPQQNG VERKH+ +LN+ RALMFQS +P  FW ++
Sbjct: 323  EFF---LRDFFNSKGIIHQTSCVYTPQQNGRVERKHQHILNVARALMFQSKLPSNFWSYA 379

Query: 2199 LMTATYLVNRLPSVVLGWQTPYELLYGKPPDYSTIKPFGCLAFATNVSPHKHKFEARAHR 2020
            +  A +L+NR+PS ++  +TP+ELL   PPD+S +K FGCL +A+  +  +HKFE R+ +
Sbjct: 380  IKHAIFLINRVPSPIISHKTPFELLNKIPPDFSMLKVFGCLCYASTHN-QRHKFEPRSRK 438

Query: 2019 CLFVGYCPGSKGYRLFDMDSNQFLISRDVHFIETTFPF----------LQHTATKSPTP- 1873
             +F+G+  G+KG+ + D+++ + L+SR+V F ET+FPF           Q + T SP P 
Sbjct: 439  GIFMGFQNGTKGFVILDINTREILVSRNVIFHETSFPFHTSAPTSPFITQPSLTISPNPD 498

Query: 1872 -LPLVPVTEDQFXXXXXXXXXXXXXXXXXXXSTRLLKPPSWLNDYVTNTCTDSLPTTTIT 1696
             L   P + +                      T        ++ Y T+T  D +P    +
Sbjct: 499  ILTTPPTSPNDTSPSQNPNPDASASPSSPAAPTSPFHDS--ISSYPTSTDFDIVPHHRSS 556

Query: 1695 PPVLSTPGSSSTISTLPSFVSPPLSSTYVSFLANITNQQEPRSFTQASKDVNWVRAMHKE 1516
             P +  P  S           PP  S Y   L ++ + Q   S T++ ++  W  AM  E
Sbjct: 557  SPAIPPPRRSER-----DIHPPPYLSEYQYKLPSLKSVQ---SSTRSIQNPCWREAMTCE 608

Query: 1515 LEALEKNGTWELTALPQGKKAIGSKWVYKLKLLPDGSIDRYKARLVAKGYHQVYGLDYLD 1336
            L+ALE N TW++   P   + IG KWV+K+K LP+GSI+RYKARLVAKGY Q+ G+DY +
Sbjct: 609  LKALELNHTWDVVETPSHVRPIGCKWVFKIKRLPNGSIERYKARLVAKGYSQIEGIDYFE 668

Query: 1335 NFSPVARLVTVRMLIAVATMKGWDLEQLDINNAFLHGYLNEDIYMTPPEGYSKAKPGQVC 1156
             FSPV ++ TVR+++A+A++  W ++QLD++NAFLHG L ED+YM  P+G +       C
Sbjct: 669  TFSPVVKMTTVRVVLALASINQWHIQQLDVSNAFLHGDLLEDVYMELPQGLTGYSSSHSC 728

Query: 1155 HLKRSLYGLKQASRQWNLEFCQKLVAYGMVQSQHDHCLFIKASQSSFLALIIYVDDVLVT 976
             L++SLYGLKQ+SR+W  +    L++ G  Q+  DH LF K   S+F AL+IYVDD+++T
Sbjct: 729  KLRKSLYGLKQSSRKWYEKLSNLLLSNGYKQAHSDHSLFTKRHGSAFTALLIYVDDIVLT 788

Query: 975  GSNSHDIAALKTYLDDMFTIKDLGPAKYFLGLEIVRSMEGTYLNQRKYILDILSDVGLTD 796
            G+++ +I  +K  L   F +KDLG  KYFLG+E+  S +G  L QRKY LD+LSD G+  
Sbjct: 789  GNSAAEITRIKHILHSNFHVKDLGQLKYFLGIEVAHSSKGISLCQRKYCLDLLSDSGMLG 848

Query: 795  CKPAPLPFPQGLKLVAQAGEPFSDPDQYRRLVGRLLYLNLTRADITYCVQQLSQFVNSPH 616
            CKP+  P    L+L   A     DP  YRRLVGRL+YL  TR DI +  QQLSQF++ P 
Sbjct: 849  CKPSSTPMDSTLRLHDDASGYLDDPLPYRRLVGRLVYLTNTRPDIAFSTQQLSQFMSKPT 908

Query: 615  TSHWDAAIHVLRYLKGCPSTGLFYPADASFDFRAFSDADWASCGDTRRSLTGFCVFFGGS 436
             +H  AA+ VLRYLK CP TGLF+P         FSDADWA+C  +RRS+TG+C F G +
Sbjct: 909  NAHHAAAMRVLRYLKSCPGTGLFFPRVCPIQVSGFSDADWATCVASRRSITGYCFFIGNA 968

Query: 435  LVXXXXXXXXXXXXXTAEAEYRAMSTTVCELQWLSYLARDLQLPIPTPIPLFCDNQAALH 256
            L+             ++EAEYRA+++  CELQW+ YL RDL + +     L+CDN +ALH
Sbjct: 969  LISWKTKKQTTVSRSSSEAEYRALASATCELQWIIYLLRDLHISLSQISLLYCDNTSALH 1028

Query: 255  IVANPVFHERTKHLDIDCHLVRNQYKSGFVLPQKVGSLDQLADLFTKPLGKQLFRSFVVK 76
            I ANPVFHERTKHLDIDCH+VR + ++G +    V S  QLAD+FTK L    F+  + K
Sbjct: 1029 IAANPVFHERTKHLDIDCHIVREKTQAGLMKLLPVPSAKQLADIFTKALPPHAFKLNLSK 1088

Query: 75   LGMKDFHPLPT*GG 34
            L +++    P  GG
Sbjct: 1089 LQLQNIFAPPACGG 1102


>gb|KHN01991.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Glycine soja]
          Length = 1311

 Score =  812 bits (2097), Expect = 0.0
 Identities = 449/1093 (41%), Positives = 640/1093 (58%), Gaps = 30/1093 (2%)
 Frame = -3

Query: 3258 SNISSDTYCALSTFDHSVKDCWIIDTGASRHMCYNKSLLTN---LVPLPSSTIIFLPDGS 3088
            S   S T+C   TF  S    WI+D+ A+ H+  + S L +   + P+P    + LP+G 
Sbjct: 250  SGRKSCTHCG--TFQ-SFTSPWILDSRATDHVTCSLSNLHSYECINPVP----VKLPNGH 302

Query: 3087 TKQVTHSGQVTLSSSLTLYDVLLVPSFTYNLLSVAQLTHNSHLKFVFYASHCVLQDQRTE 2908
                THSG V LS S+TL++VL +P+FT+NL+S+++L  ++H   +F ++ C+LQD  T 
Sbjct: 303  QVHATHSGIVHLSKSITLFNVLYMPAFTFNLISISKLVSSTHCALIFSSTSCMLQDASTR 362

Query: 2907 EVVAVGKAHGRLYILQPFSTHNSSSGFTCASTSNFHSLSCNNVLLE-WHSKLGHPSVSVL 2731
              + + +    LY L P   +           S      C  + ++ WH ++GH S    
Sbjct: 363  TKIGIVEEKHGLYHLIPDQVNK-------VICSTIIHPKCKIIPIDLWHFRMGHLST--- 412

Query: 2730 EHIPCLQPFYNPSMKHIFDDCEICHKSKQPRLSFPLSTTRSGSCFDLIHVDVWGPYAKFN 2551
            E + C++P Y          C  CH +K  +L F  ST+ +   F L+HVD+WGP +K +
Sbjct: 413  ERLQCMKPHYPILRNDKTFVCNTCHYAKHKKLPFSSSTSHASHIFYLLHVDIWGPCSKPS 472

Query: 2550 VSNTPYMLTLVDDYSRATWTYFLAHKSQVVSILESFFLMINTQFDKKVKVVRSDNGSEFV 2371
            +    Y LT+VDD+SR TW + +  K++   I+ +F   + TQ++KK+K +RSDNG EF+
Sbjct: 473  MHGHKYFLTIVDDHSRFTWVHLMHTKAETRDIIVNFIASVETQYNKKIKKIRSDNGYEFL 532

Query: 2370 NHSCQALFHSLGIVHQKSCVYTPQQNGVVERKHRTLLNLGRALMFQSGVPMKFWVHSLMT 2191
              S  A   S GI+HQ +CV TP+QNG+ ERKH+ LLN+ RAL+FQ+ +P  FW ++L+ 
Sbjct: 533  MPSFYA---SKGIMHQTTCVETPEQNGIAERKHQHLLNVTRALLFQANLPSNFWCYALLH 589

Query: 2190 ATYLVNRLPSVVLGWQTPYELLYGKPPDYSTIKPFGCLAFATNVSPHKHKFEARAHRCLF 2011
            ATYLVN +P+  L   +PYE L+G  P+ S ++ FGCL +A+ +  ++ K + RAH C+F
Sbjct: 590  ATYLVNCIPTPFLHNVSPYEKLHGHLPEISHLRVFGCLCYASTLKANRKKLDPRAHPCIF 649

Query: 2010 VGYCPGSKGYRLFDMDSNQFLISRDVHFIETTFPFLQHTATKSPT--------------- 1876
            +G+   +KGY ++++  +  + SR+V F E  F  +  T +  P                
Sbjct: 650  IGFKASTKGYLVYNLHLHSIITSRNVVFYEDHFSQIPETQSSHPESSTILPKSFNISPHD 709

Query: 1875 ------PLPLVPVTEDQFXXXXXXXXXXXXXXXXXXXSTRLLKP---PSWLNDYVTNTCT 1723
                  P P++  T D                       R  +P   P++L DY  +  +
Sbjct: 710  PIIEKPPQPVIQETTDHTPLQLTSTDESAFSQRTKHEPRRSTRPKHAPTYLQDYHHSLSS 769

Query: 1722 DSLPTTTITPPVLSTPGSSSTISTLPSFVSPPLSSTYVSFLANITNQQEPRSFTQASKDV 1543
                 +T +   LS+  S S            LS T+  F+ +I++  EP S+ +AS+  
Sbjct: 770  HDTKVSTSSRYPLSSVLSYSR-----------LSHTHKHFVMSISSTVEPSSYAEASQYD 818

Query: 1542 NWVRAMHKELEALEKNGTWELTALPQGKKAIGSKWVYKLKLLPDGSIDRYKARLVAKGYH 1363
             W++AM  EL+AL+ N TW+LT LP  K AIG +WVYK+K   DGSI+RYKARLVAKGY 
Sbjct: 819  CWIKAMEAELQALQSNNTWKLTLLPPHKTAIGCRWVYKIKHRADGSIERYKARLVAKGYT 878

Query: 1362 QVYGLDYLDNFSPVARLVTVRMLIAVATMKGWDLEQLDINNAFLHGYLNEDIYMTPPEGY 1183
            Q+ GLDYL  FSPVA+L  VR+L+A+     W L QLD+NNAFLHG L+E++YM  P G 
Sbjct: 879  QMEGLDYLYAFSPVAKLTIVRLLLAMVAFNQWHLRQLDVNNAFLHGELDEEVYMQVPPGL 938

Query: 1182 SKAKPGQVCHLKRSLYGLKQASRQWNLEFCQKLVAYGMVQSQHDHCLFIKASQSSFLALI 1003
            S      VC L+RSLY LKQASRQW  +    L++ G  +S  DH LF++ + S   AL+
Sbjct: 939  SVPNSQMVCRLQRSLYELKQASRQWFTKLSGLLISLGFEKSHSDHSLFLRFTGSIITALL 998

Query: 1002 IYVDDVLVTGSNSHDIAALKTYLDDMFTIKDLGPAKYFLGLEIVRSMEGTYLNQRKYILD 823
            +YVDD+++TG++  +I  +   LD  F IKDLG  KYFLG+EI RS  G +L QRKY LD
Sbjct: 999  VYVDDIILTGNSESEIQDVIKLLDQAFKIKDLGNLKYFLGMEIARSSSGIHLCQRKYTLD 1058

Query: 822  ILSDVGLTDCKPAPLPFPQGLKLVAQAGEPFSD--PDQYRRLVGRLLYLNLTRADITYCV 649
            ILSD G+  C+P   P     KL A AG P S      YRRL+GRL+YL  TR DITY V
Sbjct: 1059 ILSDSGMLGCQPNVTPMDYSTKLQATAGTPLSTEASSSYRRLIGRLIYLTNTRPDITYAV 1118

Query: 648  QQLSQFVNSPHTSHWDAAIHVLRYLKGCPSTGLFYPADASFDFRAFSDADWASCGDTRRS 469
            QQLSQ++++P + H  AA  +LRYLKG   +G+F  A  +   RAFSD+DWA C D+R+S
Sbjct: 1119 QQLSQYMSNPTSVHQQAAYRILRYLKGTSGSGIFLSATGTPQLRAFSDSDWAGCQDSRKS 1178

Query: 468  LTGFCVFFGGSLVXXXXXXXXXXXXXTAEAEYRAMSTTVCELQWLSYLARDLQLPIPTPI 289
             TGF ++ G S V             ++EAEYRAM+TT CELQWL+YL +D +     P 
Sbjct: 1179 TTGFVIYLGSSPVSWQSKKQSTVSRSSSEAEYRAMATTTCELQWLTYLLQDFRHNFTKPA 1238

Query: 288  PLFCDNQAALHIVANPVFHERTKHLDIDCHLVRNQYKSGFVLPQKVGSLDQLADLFTKPL 109
             ++CDNQ+A+ I  NPVFHERTKH++IDCH+VR +  SG +    V S  QLAD+FTK L
Sbjct: 1239 TIYCDNQSAIQIATNPVFHERTKHIEIDCHIVRQKVTSGLLKLLPVPSSLQLADIFTKAL 1298

Query: 108  GKQLFRSFVVKLG 70
               +F++   KLG
Sbjct: 1299 PPTVFQNLCNKLG 1311



 Score =  164 bits (415), Expect = 3e-37
 Identities = 94/276 (34%), Positives = 139/276 (50%), Gaps = 11/276 (3%)
 Frame = -3

Query: 4290 LTGNNYLSWSRSMMIALGAKTKLGFVNGTVTMPKSDSPEYDSWKRVDLMVTSWILNSISK 4111
            L   NY SWSRSM+IAL AK KL FV+G+   P      Y +W+R + MV SWI++S++ 
Sbjct: 1    LDSTNYHSWSRSMIIALSAKNKLEFVDGSAPEPLKTDRTYGAWRRCNNMVLSWIVHSVAA 60

Query: 4110 EIVDAFLYVKSAHELCEDIAQRFGECNGTVLYQLQKEISTLTQGNATVAVYFTKLKKLWD 3931
             I  + L++  A ++  D+  R+ + +   +  LQ+E STL QG  +V  YFT+L+ +WD
Sbjct: 61   SIRQSILWMDKAEDIWRDLKTRYSQGDLLRISDLQQEASTLRQGTLSVTEYFTRLRVIWD 120

Query: 3930 EYSSLEPLPV------CKCGADKILAEKELNRRLMQFLMGLNDTYDHIRSQILIMDPLPS 3769
            E  +  P P       C C A  I+A+++L  R MQFL GLND Y +IRS +L+MDP+P+
Sbjct: 121  EIENFRPDPACTCNVRCSCSAFAIIAQRKLEDRAMQFLRGLNDQYTNIRSHVLLMDPIPA 180

Query: 3768 VNRAYSMIQRVEKQ----RDVQVNF-PHTMDTAALLAKLPHXXXXXXXXXXXXGSNWQXX 3604
            + + +S + + E+Q        +NF P  +   A                          
Sbjct: 181  ITKIFSYVAQQERQLLGNSSPNLNFEPKDVSINA-------------------------- 214

Query: 3603 XXXXXXXREEKAKLTCEHCKMTGHEITECFKLHGYP 3496
                       AK  C +C   GH    C+K HG P
Sbjct: 215  -----------AKTICNYCGRIGHTENICYKKHGMP 239


>gb|KOM38790.1| hypothetical protein LR48_Vigan03g217200 [Vigna angularis]
          Length = 1119

 Score =  751 bits (1940), Expect = 0.0
 Identities = 421/1080 (38%), Positives = 621/1080 (57%), Gaps = 33/1080 (3%)
 Frame = -3

Query: 3195 WIIDTGASRHMCYNKSLLTNLVPLPSSTIIFLPDGSTKQVTHSGQVTLSSSLTLYDVLLV 3016
            WI+D+GAS H+  N  L +++       ++ + +GS        +V+LS SL L  +L +
Sbjct: 76   WILDSGASNHLSGNTRLFSSITSQKDPQLVTIANGSKLTSQGIDKVSLSPSLNLNSILYI 135

Query: 3015 PSFTYNLLSVAQLTHNSHLKFVFYASHCVLQDQRTEEVVAVGKAHGRLYILQPFSTHNSS 2836
            P   YNL+SV+QLT + +    F A+  V+Q+  T   +  G   G LY L+P      +
Sbjct: 136  PHCPYNLMSVSQLTRSLNCSITFTATSFVIQEHGTGRRIGEGYESGGLYFLKP------T 189

Query: 2835 SGFTCASTSNFHSLSCNNVLLEWHSKLGHPSVSVLEHIPCLQPFYNPSMKHI-FDDCEIC 2659
            S  +C STS+   L         H +LGHP++S L+ +        PS+KHI   DCE C
Sbjct: 190  SFVSCISTSSPKIL---------HDRLGHPNLSKLKLMV-------PSLKHIPVLDCESC 233

Query: 2658 HKSKQPRLSFPL-STTRSGSCFDLIHVDVWGPYAKFNVSNTPYMLTLVDDYSRATWTYFL 2482
               K  R S+P  S TR  S F  IH D+WGP ++       Y +T +D++SR T  Y +
Sbjct: 234  QLGKHVRSSYPKKSETRCKSIFSTIHSDIWGP-SRVTSFGFNYFVTFIDEFSRCTRVYLM 292

Query: 2481 AHKSQVVSILESFFLMINTQFDKKVKVVRSDNGSEFVNHSCQALFHSLGIVHQKSCVYTP 2302
              +S++++I  SF   I  QF K +K++RSDN  E+ + +  +   S GI+HQ +C +TP
Sbjct: 293  KERSELLAIFMSFVNEIQNQFGKTIKILRSDNAKEYFSAAFSSFLSSKGILHQSTCPHTP 352

Query: 2301 QQNGVVERKHRTLLNLGRALMFQSGVPMKFWVHSLMTATYLVNRLPSVVLGWQTPYELLY 2122
            QQNG+ ERK+R L+   R+LM  + VP+  W  +++TA + +NR+PS  L  + PY +++
Sbjct: 353  QQNGIAERKNRHLIETTRSLMLNTNVPVHHWGDAILTACFQINRMPSSSLENKVPYSVIF 412

Query: 2121 GKPPDYSTIKP--FGCLAFATNVSPHKHKFEARAHRCLFVGYCPGSKGYRLFDMDSNQFL 1948
                 Y  I P  FGC  F  NVSP   K   ++ +C+F+GY    KGYR +   + +  
Sbjct: 413  PNDALYH-IPPRVFGCTCFVHNVSPGLDKLSPKSIKCVFLGYSRIQKGYRCYSPSTRRNY 471

Query: 1947 ISRDVHFIETTFPFLQH----TATKSPTPLPL-----VPVTEDQFXXXXXXXXXXXXXXX 1795
            +S DV F E T  FL      ++ +   P+PL     +P +                   
Sbjct: 472  MSSDVTFFEDTPFFLSSKEYPSSVEEMLPIPLCDPLVIPASPSS---------------P 516

Query: 1794 XXXXSTRLLKPPSWLNDYVTNTCTDSLPTTTITP-------------PVLSTPGSSSTIS 1654
                +  +++PPS + +   ++      + T+ P             P+    G  ST +
Sbjct: 517  QTQNAQDIVEPPSSMPEDPRDSAPSPSDSQTMDPSTSSSSLDSNQAWPIALRKGIQSTRN 576

Query: 1653 TLP--SFVS-PPLSSTYVSFLANITNQQEPRSFTQASKDVNWVRAMHKELEALEKNGTWE 1483
              P  +F+S   LS TY SF+++++N + P +  +A     W +AM  E++AL+K+GTW+
Sbjct: 577  PYPVYNFLSYHRLSPTYFSFVSSLSNIKVPNNVREALDHPGWRQAMIDEMQALDKSGTWD 636

Query: 1482 LTALPQGKKAIGSKWVYKLKLLPDGSIDRYKARLVAKGYHQVYGLDYLDNFSPVARLVTV 1303
            L  LP  KK +G +WVY +K+ P G+IDR KARLVAKGY QVYGLDY D FSPVA++ +V
Sbjct: 637  LVPLPPDKKPVGCRWVYAIKVGPTGAIDRLKARLVAKGYTQVYGLDYCDTFSPVAKISSV 696

Query: 1302 RMLIAVATMKGWDLEQLDINNAFLHGYLNEDIYMTPPEGYSKAKPGQ---VCHLKRSLYG 1132
            R+ +A+A ++ W L QLDI NAFLHG L E+IYM  P G+S    G+   VC L+RSLYG
Sbjct: 697  RLFLAMAAIRQWPLHQLDIKNAFLHGDLEEEIYMEQPPGFSCVAQGETKLVCKLRRSLYG 756

Query: 1131 LKQASRQWNLEFCQKLVAYGMVQSQHDHCLFI-KASQSSFLALIIYVDDVLVTGSNSHDI 955
            LKQ+ R W  +F   +  +G+ + + DH +F   ++    + L++YVDD+++TG++   I
Sbjct: 757  LKQSPRAWFGKFSHVVQQFGLKRCEADHLVFYGHSTPDKCVYLMVYVDDIVITGNDVARI 816

Query: 954  AALKTYLDDMFTIKDLGPAKYFLGLEIVRSMEGTYLNQRKYILDILSDVGLTDCKPAPLP 775
            A LK +L + F  KDLG  KYFLG+E+ +S EG  ++QRKY LDIL + GLTDCKP    
Sbjct: 817  AQLKDHLFNHFQTKDLGRLKYFLGIEVAQSKEGVIISQRKYALDILEETGLTDCKPIDSR 876

Query: 774  FPQGLKLVAQAGEPFSDPDQYRRLVGRLLYLNLTRADITYCVQQLSQFVNSPHTSHWDAA 595
                 KL+   GEPFS+P++YRRLVG+L+YL +TR D++Y V  +SQF+ +P   HW+A 
Sbjct: 877  MVSNKKLMKDHGEPFSNPERYRRLVGKLIYLTITRPDLSYPVGVVSQFMQNPRIDHWNAV 936

Query: 594  IHVLRYLKGCPSTGLFYPADASFDFRAFSDADWASCGDTRRSLTGFCVFFGGSLVXXXXX 415
            + +LRY+KG P  GL Y    S +   + DADWA C + RRS TG+CV  GG+LV     
Sbjct: 937  VRILRYVKGNPDHGLLYENKGSTELEGYCDADWAGCPNDRRSTTGYCVLLGGNLVSWKSK 996

Query: 414  XXXXXXXXTAEAEYRAMSTTVCELQWLSYLARDLQLPIPTPIPLFCDNQAALHIVANPVF 235
                    +AEAEYR+M+   CEL W+  L ++L+     P+ L+CDNQAALHI +NPVF
Sbjct: 997  KQSVVARSSAEAEYRSMAIATCELIWIKQLLQELKFCENKPMKLYCDNQAALHIASNPVF 1056

Query: 234  HERTKHLDIDCHLVRNQYKSGFVLPQKVGSLDQLADLFTKPLGKQLFRSFVVKLGMKDFH 55
            HERTKH++IDCH +R +  S  ++ + V S +Q AD+FTK L     +    KLG  D +
Sbjct: 1057 HERTKHIEIDCHFIREKLLSKDLITEFVHSNEQFADIFTKSLRGPRIQFICSKLGAYDLY 1116


>emb|CAN71267.1| hypothetical protein VITISV_017889 [Vitis vinifera]
          Length = 1576

 Score =  706 bits (1821), Expect = 0.0
 Identities = 407/1075 (37%), Positives = 583/1075 (54%), Gaps = 46/1075 (4%)
 Frame = -3

Query: 3195 WIIDTGASRHMCYNKSLLTNLVPLPSSTIIFLPDGSTKQVTHSGQVTLSSSLTLYDVLLV 3016
            W +D+GAS HM  N + L  + P    + I   +GS+  +   G    SS  T  DV L 
Sbjct: 504  WYVDSGASNHMTNNPTALCYVRPYAGQSSIQTANGSSLPIAAIGDA--SSKFT--DVFLA 559

Query: 3015 PSFTYNLLSVAQLTHNSHLKFVFYASHCVLQDQRTEEVVAVGKAHGRLYIL----QPFST 2848
            P  + NL+SV QL  N+     F  + CV+QDQ T + +A G   GRL+ L      FS 
Sbjct: 560  PQLSTNLISVGQLVDNN-CAVNFSGNGCVVQDQVTGKPIAKGPKVGRLFPLFLPIPDFSP 618

Query: 2847 HNSSSGFTCASTSNFHSLSCNNVLLEWHSKLGHPSVSVLEHIPCLQPFYNPSMKHIFDDC 2668
             +S   F C + S+   +        WH +LGHP+  +L H+       N     +  +C
Sbjct: 619  XSSIKSFACNNVSDLSMV--------WHRRLGHPNTQILSHVLNSDLPGNKDRYSLSLEC 670

Query: 2667 EICHKSKQPRLSFPLSTTRSGSCFDLIHVDVWGPYAKFNVSNTPYMLTLVDDYSRATWTY 2488
            + C   K   L FPL  +R+  CFDLIH DVWGP    +     Y +T +DD+SR TW Y
Sbjct: 671  DSCKLGKSKTLPFPLHASRASHCFDLIHSDVWGPSPVSSHEKFKYYVTFIDDHSRFTWVY 730

Query: 2487 FLAHKSQVVSILESFFLMINTQFDKKVKVVRSDNGSEFVNHSCQALFHSLGIVHQKSCVY 2308
            FL  KS+V      F   ++ QF   +K +R+D+G E+++   QA   S GI+HQ+SC  
Sbjct: 731  FLRSKSEVFRTFTEFLAYVDNQFSTSIKTLRTDSGGEYLSTEFQAFLASKGIIHQRSCPS 790

Query: 2307 TPQQNGVVERKHRTLLNLGRALMFQSGVPMKFWVHSLMTATYLVNRLPSVVLGWQTPYEL 2128
            TPQQNGV ERK+R LL++ R L+ +S VP  FWV +L TAT+L+NRLPS VL  ++PY  
Sbjct: 791  TPQQNGVAERKNRHLLDVVRTLLLESSVPSIFWVEALKTATHLINRLPSQVLHMESPYFR 850

Query: 2127 LYGKPPDYSTIKPFGCLAFATNVSPH-KHKFEARAHRCLFVGYCPGSKGYRLFDMDSNQF 1951
            L+ K P Y  ++ FGC+ F  ++ PH +HK  A++ RC F+GY    KG+  +D   ++ 
Sbjct: 851  LFAKQPSYDHLRIFGCVCFV-HLPPHERHKLSAQSVRCAFLGYNMCQKGFVCYDPTLHRT 909

Query: 1950 LISRDVHFIETTFPFLQHTATKSPTPLPLVPVTEDQFXXXXXXXXXXXXXXXXXXXSTRL 1771
             ISR+V F E    F   ++T S +   ++P  E QF                     R 
Sbjct: 910  RISRNVIFFENQHFFPVSSSTVSSSSTVVLPSFEQQFSDLHPVSSRFQPGIVYI----RR 965

Query: 1770 LKPPSWLNDYVTNTCTDSLPTTTITPPVLSTPGSSSTISTLP----SFVSPPLSSTYVSF 1603
             +P S     V +  +D  PTT     V +     S+  ++P     F S    ++  + 
Sbjct: 966  SRPQSLS---VAHPISD--PTTLQMXSVAAXSVRRSSRVSVPXNRYGFPSSSSGNSISAL 1020

Query: 1602 LANITNQQEPRSFTQASKDVNWVRAMHKELEALEKNGTWELTALPQGKKAIGSKWVYKLK 1423
             A ++    P  ++ A+K   W +AM +E+ ALE N TW++   P     +G KWVY +K
Sbjct: 1021 TAALSKFDIPTCYSHAAKHDCWRQAMQEEIAALEANHTWDIEPCPPTIVPLGCKWVYSVK 1080

Query: 1422 LLPDGSIDRYKARLVAKGYHQVYGLDYLDNFSPVARLVTVRMLIAVATMKGWDLEQLDIN 1243
            +  DGS+DRYKARLVA G +Q YG++Y + F+PVA++ TVR ++A+A    W L Q+D+ 
Sbjct: 1081 VRSDGSLDRYKARLVALGNNQEYGVNYEETFAPVAKMTTVRTILALAASSDWPLHQMDVK 1140

Query: 1242 NAFLHGYLNEDIYMTPPEGYSKAKPGQVCHLKRSLYGLKQASRQWNLEFCQKLVAYGMVQ 1063
            NAFLHG L E IYM PP G   +    VC L+RSLYGLKQA R W  +F   L+ +   Q
Sbjct: 1141 NAFLHGDLKECIYMKPPPGLFPSPTSHVCKLRRSLYGLKQAPRAWFEKFRTTLLQFSFRQ 1200

Query: 1062 SQHDHCLFIKASQSSFLALIIYVDDVLVTGSNSHDIAALKTYLDDMFTIKDLGPAKYFLG 883
            S++D  LF++ S    + L++YVDD+++TGS+S  +  LKT+L   F +KDLG   YFLG
Sbjct: 1201 SKYDTSLFLQKSDMDIVVLLVYVDDIVITGSDSALLGQLKTHLFKSFHMKDLGSLTYFLG 1260

Query: 882  LEIVRSMEGTYLNQRKYILDILSDVGL--TDCKPAPL----------------------- 778
            LE+  S  G  LNQ KY  D+++  GL  T     P+                       
Sbjct: 1261 LEVHHSPSGISLNQHKYASDLVATAGLQGTTSVDTPMELNVKLRKEEGDLLADPSLYRKL 1320

Query: 777  ------------PFPQGLKLVAQAGEPFSDPDQYRRLVGRLLYLNLTRADITYCVQQLSQ 634
                        P    +KL  + G+  +DP  YR+LVG L+YL +TR DI++ VQQ+SQ
Sbjct: 1321 VAGLQGTTSVDTPMELNVKLRKEEGDLLADPSLYRKLVGSLVYLTITRPDISFAVQQVSQ 1380

Query: 633  FVNSPHTSHWDAAIHVLRYLKGCPSTGLFYPADASFDFRAFSDADWASCGDTRRSLTGFC 454
            F+ +P   H  A   ++RY++G  + GLF+PA  S    A+SDADWA C DTRRS+TG+C
Sbjct: 1381 FLQTPRHLHLAAVRRIIRYVQGTSTRGLFFPAGNSTRLAAYSDADWAGCADTRRSITGWC 1440

Query: 453  VFFGGSLVXXXXXXXXXXXXXTAEAEYRAMSTTVCELQWLSYLARDLQLPIPTPIPLFCD 274
            VF G +L+             + E EYRAMS    E+ WL  L  +L      P PL  D
Sbjct: 1441 VFLGDALISWKSKKQDRVSKSSTEFEYRAMSLACSEIIWLRGLLAELDFSETDPTPLHAD 1500

Query: 273  NQAALHIVANPVFHERTKHLDIDCHLVRNQYKSGFVLPQKVGSLDQLADLFTKPL 109
            N +A+ I ANPV+HERTKH+++DCH +R  +++  +    + +  Q+AD+FTK L
Sbjct: 1501 NTSAIQITANPVYHERTKHIEVDCHSIREAFEARVITLPHISTDLQIADIFTKAL 1555



 Score = 71.2 bits (173), Expect = 1e-08
 Identities = 53/212 (25%), Positives = 91/212 (42%), Gaps = 6/212 (2%)
 Frame = -3

Query: 4278 NYLSWSRSMMIALGAKTKLGFVNGT-VTMPKSDSPEYD-----SWKRVDLMVTSWILNSI 4117
            NY + +    + L  K   G ++GT V  P +     D     SW  +D  + SW+L S+
Sbjct: 217  NYSTXAFQFELFLKGKDLWGHIDGTDVEKPSTFEKSQDVGFSPSWVVLDARIMSWLLGSV 276

Query: 4116 SKEIVDAFLYVKSAHELCEDIAQRFGECNGTVLYQLQKEISTLTQGNATVAVYFTKLKKL 3937
               IV      +SA  +   + + + + N    +QL+  I+    G+ ++  Y++    L
Sbjct: 277  EPHIVTHLRPHRSAQSMXAYLKKVYHQDNDARRFQLEHAIAMFQHGSLSIQDYYSAFLTL 336

Query: 3936 WDEYSSLEPLPVCKCGADKILAEKELNRRLMQFLMGLNDTYDHIRSQILIMDPLPSVNRA 3757
            W EY+ L    V       I A     RR  QFLM L   Y+ +RS +L    +PS++  
Sbjct: 337  WHEYADLVTADVPIAALSTIQAIHATTRR-DQFLMKLRPEYESVRSSLLNRSXVPSLDIC 395

Query: 3756 YSMIQRVEKQRDVQVNFPHTMDTAALLAKLPH 3661
            +  + R E++   Q     +  ++    K  H
Sbjct: 396  FGELLREEQRLSTQAILEQSHGSSGXTTKKGH 427


>gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 protease homolog from
            Arabidopsis thaliana BAC gb|AF080119 and is a member of
            the reverse transcriptase family PF|00078 [Arabidopsis
            thaliana]
          Length = 1415

 Score =  671 bits (1730), Expect = 0.0
 Identities = 391/1091 (35%), Positives = 575/1091 (52%), Gaps = 21/1091 (1%)
 Frame = -3

Query: 3237 YCALSTFDHSVKDCWIIDTGASRHMCYNKSLLTNLVPLPSSTIIFLPDGSTKQVTHSGQV 3058
            +  L   D + K+ W  D+ A+ H+  + + L +         + + DG+   +TH+G  
Sbjct: 309  FSTLRVSDDTGKE-WHPDSAATAHVTSSTNGLQSATEYEGDDAVLVGDGTYLPITHTGST 367

Query: 3057 TLSSS---LTLYDVLLVPSFTYNLLSVAQLTHNSHLKFVFYASHCVLQDQRTEEVVAVGK 2887
            T+ SS   + L +VL+VP+   +LLSV++L  +      F A+   + D +T++VV  G 
Sbjct: 368  TIKSSNGKIPLNEVLVVPNIQKSLLSVSKLCDDYPCGVYFDANKVCIIDLQTQKVVTTGP 427

Query: 2886 AHGRLYILQPFSTHNSSSGFTCASTSNFHSLSCNNVLLEWHSKLGHPSVSVLEHIPCLQP 2707
                LY+L+        S   CA+T              WH +LGH +   L+H+   + 
Sbjct: 428  RRNGLYVLENQEFVALYSNRQCAATEEV-----------WHHRLGHANSKALQHLQNSKA 476

Query: 2706 FYNPSMKHIFDDCEICHKSKQPRLSFPLSTTRSGSCFDLIHVDVWGPYAKFNVSNTPYML 2527
                +       CE C   K  RL F +S +R     D IH D+WGP    +     Y  
Sbjct: 477  I-QINKSRTSPVCEPCQMGKSSRLPFLISDSRVLHPLDRIHCDLWGPSPVVSNQGLKYYA 535

Query: 2526 TLVDDYSRATWTYFLAHKSQVVSILESFFLMINTQFDKKVKVVRSDNGSEFVNHSCQALF 2347
              VDDYSR +W Y L +KS+ +S+  SF  ++  Q + K+KV +SD G EFV++  +   
Sbjct: 536  IFVDDYSRYSWFYPLHNKSEFLSVFISFQKLVENQLNTKIKVFQSDGGGEFVSNKLKTHL 595

Query: 2346 HSLGIVHQKSCVYTPQQNGVVERKHRTLLNLGRALMFQSGVPMKFWVHSLMTATYLVNRL 2167
               GI H+ SC YTPQQNG+ ERKHR L+ LG +++F S  P KFWV S  TA Y++NRL
Sbjct: 596  SEHGIHHRISCPYTPQQNGLAERKHRHLVELGLSMLFHSHTPQKFWVESFFTANYIINRL 655

Query: 2166 PSVVLGWQTPYELLYGKPPDYSTIKPFGCLAFATNVSPHKHKFEARAHRCLFVGYCPGSK 1987
            PS VL   +PYE L+G+ PDYS+++ FG   +       ++KF+ R+ +C+F+GY    K
Sbjct: 656  PSSVLKNLSPYEALFGEKPDYSSLRVFGSACYPCLRPLAQNKFDPRSLQCVFLGYNSQYK 715

Query: 1986 GYRLFDMDSNQFLISRDVHFIETTFPFLQHTATKSPT-PLPLVPVTEDQFXXXXXXXXXX 1810
            GYR F   + +  ISR+V F E+  PF +   +  P    PL+   +             
Sbjct: 716  GYRCFYPPTGKVYISRNVIFNESELPFKEKYQSLVPQYSTPLLQAWQHN----------K 765

Query: 1809 XXXXXXXXXSTRLLKPPSWLNDY----VTNTCTDSLPTTT-------ITPPVLSTPGSSS 1663
                       +L   P  LN Y    VT   TD  PT+        + P       +  
Sbjct: 766  ISEISVPAAPVQLFSKPIDLNTYAGSQVTEQLTDPEPTSNNEGSDEEVNPVAEEIAANQE 825

Query: 1662 TI-----STLPSFVSPPLSSTYVSFLANITNQQEPRSFTQASKDVNWVRAMHKELEALEK 1498
             +      T  S       +T  + + +  N  EP++   A K   W  A+H+E+  +  
Sbjct: 826  QVINSHAMTTRSKAGIQKPNTRYALITSRMNTAEPKTLASAMKHPGWNEAVHEEINRVHM 885

Query: 1497 NGTWELTALPQGKKAIGSKWVYKLKLLPDGSIDRYKARLVAKGYHQVYGLDYLDNFSPVA 1318
              TW L         + SKWV+K KL PDGSID+ KARLVAKG+ Q  G+DYL+ FSPV 
Sbjct: 886  LHTWSLVPPTDDMNILSSKWVFKTKLHPDGSIDKLKARLVAKGFDQEEGVDYLETFSPVV 945

Query: 1317 RLVTVRMLIAVATMKGWDLEQLDINNAFLHGYLNEDIYMTPPEGY-SKAKPGQVCHLKRS 1141
            R  T+R+++ V+T KGW ++QLD++NAFLHG L E ++M  P G+    KP  VC L ++
Sbjct: 946  RTATIRLVLDVSTSKGWPIKQLDVSNAFLHGELQEPVFMYQPSGFIDPQKPTHVCRLTKA 1005

Query: 1140 LYGLKQASRQWNLEFCQKLVAYGMVQSQHDHCLFIKASQSSFLALIIYVDDVLVTGSNSH 961
            +YGLKQA R W   F   L+ YG V S+ D  LF+       L L++YVDD+L+TGS+  
Sbjct: 1006 IYGLKQAPRAWFDTFSNFLLDYGFVCSKSDPSLFVCHQDGKILYLLLYVDDILLTGSDQS 1065

Query: 960  DIAALKTYLDDMFTIKDLGPAKYFLGLEIVRSMEGTYLNQRKYILDILSDVGLTDCKPAP 781
             +  L   L + F++KDLGP +YFLG++I     G +L+Q  Y  DIL   G++DC P P
Sbjct: 1066 LLEDLLQALKNRFSMKDLGPPRYFLGIQIEDYANGLFLHQTAYATDILQQAGMSDCNPMP 1125

Query: 780  LPFPQGLKLVAQAGEPFSDPDQYRRLVGRLLYLNLTRADITYCVQQLSQFVNSPHTSHWD 601
             P PQ L  +    E F++P  +R L G+L YL +TR DI + V  + Q ++SP TS + 
Sbjct: 1126 TPLPQQLDNLNS--ELFAEPTYFRSLAGKLQYLTITRPDIQFAVNFICQRMHSPTTSDFG 1183

Query: 600  AAIHVLRYLKGCPSTGLFYPADASFDFRAFSDADWASCGDTRRSLTGFCVFFGGSLVXXX 421
                +LRY+KG    GL    +++    A+SD+D A C +TRRS TGFC+  G +L+   
Sbjct: 1184 LLKRILRYIKGTIGMGLPIKRNSTLTLSAYSDSDHAGCKNTRRSTTGFCILLGSNLISWS 1243

Query: 420  XXXXXXXXXXTAEAEYRAMSTTVCELQWLSYLARDLQLPIPTPIPLFCDNQAALHIVANP 241
                      + EAEYRA++    E+ W+S+L RDL +P   P  ++CDN +A+++ ANP
Sbjct: 1244 AKRQPTVSNSSTEAEYRALTYAAREITWISFLLRDLGIPQYLPTQVYCDNLSAVYLSANP 1303

Query: 240  VFHERTKHLDIDCHLVRNQYKSGFVLPQKVGSLDQLADLFTKPLGKQLFRSFVVKLGMKD 61
              H R+KH D D H +R Q   G +  Q + +  QLAD+FTK L ++ F     KLG+  
Sbjct: 1304 ALHNRSKHFDTDYHYIREQVALGLIETQHISATFQLADVFTKSLPRRAFVDLRSKLGVSG 1363

Query: 60   FHPLPT*GGDV 28
              P P+  G V
Sbjct: 1364 -SPTPSLRGSV 1373



 Score = 70.5 bits (171), Expect = 2e-08
 Identities = 51/203 (25%), Positives = 92/203 (45%), Gaps = 16/203 (7%)
 Frame = -3

Query: 4302 VSNQLTGNNYLSWSRSMMIALGAKTKLGFVNGTVTMPKSD-------------SPEYDSW 4162
            V+ +LT +NYL W       L ++  +GFVNG V  P                +P Y+SW
Sbjct: 17   VTLKLTDSNYLLWKTQFESLLSSQKLIGFVNGAVNAPSQSRLVVNGEVTSEEPNPLYESW 76

Query: 4161 KRVDLMVTSWILNSISKEIVDAFLYVKSAHELCEDIAQRFGECNGTVLYQLQKEISTLTQ 3982
               D +V SW+  ++S+E++     + ++ ++   +A+ F + +    + L++ +  L++
Sbjct: 77   FCTDQLVRSWLFGTLSEEVLGHVHNLSTSRQIWVSLAENFNKSSVAREFSLRQNLQLLSK 136

Query: 3981 GNATVAVYFTKLKKLWDEYSSLEPLPVCKCGADKILAEKELNRRLMQFLMGLNDTYDHIR 3802
                 +VY  + K + D  SS+   PV            + + ++  FL GL   YD I 
Sbjct: 137  KEKPFSVYCREFKTICDALSSIGK-PV------------DESMKIFGFLNGLGRDYDPIT 183

Query: 3801 SQI---LIMDPLPSVNRAYSMIQ 3742
            + I   L   P P+ N   S +Q
Sbjct: 184  TVIQSSLSKLPTPTFNDVVSEVQ 206