BLASTX nr result
ID: Rehmannia27_contig00035881
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia27_contig00035881
(4260 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera] 384 e-129
emb|CAN76473.1| hypothetical protein VITISV_016007 [Vitis vinifera] 385 e-129
emb|CAN73924.1| hypothetical protein VITISV_041509 [Vitis vinifera] 391 e-125
emb|CAN78451.1| hypothetical protein VITISV_005945 [Vitis vinifera] 389 e-125
emb|CAN67403.1| hypothetical protein VITISV_025614 [Vitis vinifera] 369 e-123
gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group... 377 e-122
dbj|BAH94406.1| Os08g0544300 [Oryza sativa Japonica Group] 379 e-122
gb|KHN36156.1| Retrovirus-related Pol polyprotein from transposo... 371 e-121
gb|KHN22040.1| Retrovirus-related Pol polyprotein from transposo... 371 e-121
emb|CCH50966.1| T4.5 [Malus x robusta] 356 e-121
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|... 374 e-121
gb|KYP64199.1| Retrovirus-related Pol polyprotein from transposo... 368 e-120
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop... 369 e-120
gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz... 375 e-120
emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera] 354 e-120
gb|KHN17953.1| Retrovirus-related Pol polyprotein from transposo... 362 e-120
gb|ACY72569.1| unknown [Oryza sativa Japonica Group] 372 e-120
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc... 373 e-120
gb|KYP64898.1| Retrovirus-related Pol polyprotein from transposo... 360 e-120
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japoni... 371 e-119
>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
Length = 1455
Score = 384 bits (985), Expect(4) = e-129
Identities = 189/386 (48%), Positives = 259/386 (67%), Gaps = 1/386 (0%)
Frame = +2
Query: 2519 EPKSVTDALSNSQWKAAMDAEFSALVKNHTWDLIPFHS-HMKIDHKWVFRVKYNPDGSID 2695
EP SV+ AL +WK AM AE+ AL +N+TW L+P + I KWV++ K NPDG++
Sbjct: 936 EPSSVSAALQQDEWKKAMVAEYDALQRNNTWSLVPLPAGRQAIGCKWVYKTKENPDGTVQ 995
Query: 2696 QFKAHLVAKGFQQLPGVDYFDTFSPVVKPITIRLVFSLAVFRGWSIRHIDVNNAFLYGDL 2875
++KA LVAKGF Q G D+ +TFSPVVKP T+R+VF++A+ R W+I+ +DVNNAFL GDL
Sbjct: 996 KYKARLVAKGFHQQAGFDFTETFSPVVKPSTVRVVFTIALSRNWAIKQLDVNNAFLNGDL 1055
Query: 2876 KEDVYMSQPTGYVDNSKPTHVCKLVKSIYGLKQAPKSWNDKLKFHLLSLGFLVSQSDSCL 3055
+E+V+M QP G++D P VC+L K++YGLKQAP++W +KL LLS GF+ ++SD L
Sbjct: 1056 QEEVFMQQPQGFIDEQNPNLVCRLHKALYGLKQAPRAWFEKLHRALLSFGFVSAKSDQSL 1115
Query: 3056 FYQRIQSHXXXXXXXXXXXXXMGDDSKLVTHVIDGIQISFSLKHLARVSYFLGIQVNYIG 3235
F + +H +G D+ +T +I + FSLK L V YFLGIQV++
Sbjct: 1116 FLRFTPNHITYVLVYVDDILVIGSDTAAITSLIAQLNSEFSLKDLGEVHYFLGIQVSHTN 1175
Query: 3236 AGILLN*SKYILDLLKKTNMEDYNPCATPPCINQKLYLQDSALLENPTLYRITVGALQYL 3415
G+ L+ +KYI DLL+KT M P TP KL + D +E+ YR TVGALQY+
Sbjct: 1176 NGLHLSQTKYIRDLLQKTKMVHCKPARTPLPTGLKLRVGDGDPVEDLHGYRSTVGALQYV 1235
Query: 3416 TLTRPDISFIVNKLSQFLHAPTLSHWGACKRVLRYLRDSMTQGLLFQSSPRMNLESFADA 3595
T+TRP++SF VNK+ QF+ PT HW KR+LRYL+ ++ GL + S ++L F DA
Sbjct: 1236 TITRPELSFSVNKVCQFMQNPTEEHWKVVKRILRYLQGTLQHGLHLKKSSNLDLIGFCDA 1295
Query: 3596 DWASSMDDRRSTSGYCAFLGPNIIAW 3673
DWAS +DDRRSTSG+C FLGPN+I+W
Sbjct: 1296 DWASDLDDRRSTSGHCVFLGPNLISW 1321
Score = 89.4 bits (220), Expect(4) = e-129
Identities = 40/85 (47%), Positives = 61/85 (71%)
Frame = +1
Query: 3682 KKQSVVARSSTETEYHSLASVTTELIWIKSFFAELGLAILPRSVI*CDNISAISLASNPG 3861
KKQ +V+RSS E EY SLA + E+ W++S +EL L + ++ CDN+S + L++NP
Sbjct: 1324 KKQHIVSRSSIEIEYRSLAGLVAEITWLRSLLSELQLPLAKPPLVWCDNLSTVLLSANPV 1383
Query: 3862 FHARTKHIEVDVHFIREK*LLKTLK 3936
HARTKHIE+D++F+REK + K ++
Sbjct: 1384 LHARTKHIELDLYFVREKVIRKEVE 1408
Score = 42.7 bits (99), Expect(4) = e-129
Identities = 20/42 (47%), Positives = 29/42 (69%)
Frame = +3
Query: 3912 KIAAKDVEVRFLPSEDQVADVLTKPIVAAQFHNLCSKLSLQS 4037
K+ K+VEVR +PS DQ+ADVLTK + + QF KL +++
Sbjct: 1401 KVIRKEVEVRHVPSADQLADVLTKTVSSTQFIEFRHKLRIEN 1442
Score = 22.7 bits (47), Expect(4) = e-129
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +3
Query: 2454 MLTRSKLGIFKPK 2492
M+TR+K GI KPK
Sbjct: 916 MITRAKSGIVKPK 928
Score = 145 bits (367), Expect(4) = 8e-76
Identities = 64/126 (50%), Positives = 91/126 (72%)
Frame = +2
Query: 1769 PYTHQQNGKPKRKHQHIVNVGLSFLAHSNIPYCFWWDAFVSAIFTINRRPTSTLNHLSPF 1948
P+T QQNG +RKH+ IV GL+ L +++P FW ++F + ++ NR PT+ L+H P
Sbjct: 673 PHTQQQNGVAERKHRTIVEHGLTLLHTASLPLKFWDESFRTVVYLSNRLPTAILHHKCPI 732
Query: 1949 QKLFGSIPDYNFLKSFGCACYPYLRLYNQSKLQFRSTKCVFLGYSPAHKGYRCLSPSGKI 2128
+ LF SIPDY+FLK FGC+C+P LR YN KLQ+RS +C FLGYS HKGY+C+S +G++
Sbjct: 733 EVLFKSIPDYSFLKVFGCSCFPNLRPYNTHKLQYRSEECTFLGYSLKHKGYKCMSSNGRV 792
Query: 2129 YVARTV 2146
Y++ V
Sbjct: 793 YISHDV 798
Score = 107 bits (267), Expect(4) = 8e-76
Identities = 58/151 (38%), Positives = 86/151 (56%), Gaps = 7/151 (4%)
Frame = +1
Query: 1090 QNLLSIPQFTKDNRVFIEFHHDSCFVKDKLTHRILLKGSLQGGLYQLDLT--PLQPQSSA 1263
+NLLS+ +F KDN+VF EFH DSCFVKD++T +L+ G ++ GLY D + L+P S
Sbjct: 438 KNLLSVSKFAKDNKVFFEFHSDSCFVKDQVTQAVLMVGKVRDGLYAFDSSHLALRPTQSL 497
Query: 1264 NLHSSTAQFSNSANI----VVSDVNLWQKRLGHCSSAVLNNVLKQIK-GFNSSSQLEFCH 1428
+ S S S+ + + S +LW KRLGH S+A + NVL + + FC
Sbjct: 498 SKSPSVVASSFSSKVCTTSLSSTFDLWHKRLGHPSAATIKNVLSKCNVAHINKMDSNFCS 557
Query: 1429 ACQLGKLKSVSFPPVESKTTAPFQLVYSDVW 1521
+C LGK+ F + T P +L++ D+W
Sbjct: 558 SCCLGKIHRFPFSLSHTTYTKPLELIHLDLW 588
Score = 67.4 bits (163), Expect(4) = 8e-76
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Frame = +3
Query: 1521 GPASISSN-GYKYYIHFVDDFTNYTWICPLNTKGEALTALKHFNSVVKTQVNSHIHTFQC 1697
GP + SN GY+YYIHFVD F+ ++WI L K EA+ +F + V+ Q + I + Q
Sbjct: 589 GPTLVLSNSGYRYYIHFVDAFSRFSWIFLLRNKSEAIKTFVNFKTQVELQFDLKIKSLQT 648
Query: 1698 DWGG*FRPIAYFLS 1739
DWGG FR +L+
Sbjct: 649 DWGGEFRAFQSYLA 662
Score = 37.4 bits (85), Expect(4) = 8e-76
Identities = 14/39 (35%), Positives = 26/39 (66%)
Frame = +2
Query: 875 NESAWFMDSGATAHVTSDLKNLSLQSAYTGSDKLTIGNG 991
++ W+ DSGA+ HVT + +NL + + G +++ +GNG
Sbjct: 365 SDDNWYPDSGASNHVTPNPENLMKSAEFAGQNQVHVGNG 403
>emb|CAN76473.1| hypothetical protein VITISV_016007 [Vitis vinifera]
Length = 1002
Score = 385 bits (990), Expect(4) = e-129
Identities = 196/385 (50%), Positives = 248/385 (64%), Gaps = 1/385 (0%)
Frame = +2
Query: 2522 PKSVTDALSNSQWKAAMDAEFSALVKNHTWDLIPFHSHMK-IDHKWVFRVKYNPDGSIDQ 2698
P +V+ AL N W M E+ ALV+N+TW L+PFH M ID KW+FRVKYN DG+I +
Sbjct: 492 PTTVSQALKNPNWHTTMVEEYQALVRNNTWTLVPFHPSMNVIDSKWIFRVKYNSDGTIQR 551
Query: 2699 FKAHLVAKGFQQLPGVDYFDTFSPVVKPITIRLVFSLAVFRGWSIRHIDVNNAFLYGDLK 2878
+KA LVAKGFQQ GV++ DTFSPV+K TIR+VF+LA+ W IR ID NNAFL G++
Sbjct: 552 YKARLVAKGFQQYAGVEFTDTFSPVIKASTIRVVFTLAITYNWEIRQIDFNNAFLNGEIT 611
Query: 2879 EDVYMSQPTGYVDNSKPTHVCKLVKSIYGLKQAPKSWNDKLKFHLLSLGFLVSQSDSCLF 3058
E VY+SQP G+V S P HVCKL K++YGLKQAP+ W KL+ L + GF+ S SD+ LF
Sbjct: 612 ETVYLSQPAGFVSTSHPQHVCKLQKALYGLKQAPRVWFHKLREALHTWGFISSTSDTSLF 671
Query: 3059 YQRIQSHXXXXXXXXXXXXXMGDDSKLVTHVIDGIQISFSLKHLARVSYFLGIQVNYIGA 3238
+ + G++ LV +I +Q F+LK L V FLG +
Sbjct: 672 IYKHNGNFLLLLVYVDDLLITGNNVPLVQTLIQDLQNRFALKDLGLVKDFLGFEALRTTT 731
Query: 3239 GILLN*SKYILDLLKKTNMEDYNPCATPPCINQKLYLQDSALLENPTLYRITVGALQYLT 3418
G+ L SKY DLL KT M P TP KL+ +PTLYR T+GALQYLT
Sbjct: 732 GLHLTQSKYTTDLLIKTKMHSAKPVPTPMSAALKLHAASGPAFSDPTLYRSTIGALQYLT 791
Query: 3419 LTRPDISFIVNKLSQFLHAPTLSHWGACKRVLRYLRDSMTQGLLFQSSPRMNLESFADAD 3598
TRPDI+F VNKLSQ+L PT HW ACKRVLRYL+ + +GL F + ++L+ + DAD
Sbjct: 792 YTRPDIAFAVNKLSQYLQQPTELHWTACKRVLRYLKGIVHRGLHFTPASSLHLQVYTDAD 851
Query: 3599 WASSMDDRRSTSGYCAFLGPNIIAW 3673
WASS+DDRRST+GYC FLG N+ W
Sbjct: 852 WASSIDDRRSTTGYCVFLGTNLFTW 876
Score = 94.4 bits (233), Expect(4) = e-129
Identities = 46/84 (54%), Positives = 64/84 (76%)
Frame = +1
Query: 3682 KKQSVVARSSTETEYHSLASVTTELIWIKSFFAELGLAILPRSVI*CDNISAISLASNPG 3861
+KQ VVARSST+ EY +LA + E+ W++S F+ELG++++ VI CDN A +LA+NP
Sbjct: 879 RKQPVVARSSTKAEYRALAHASXEVAWLRSLFSELGISLVNTPVIWCDNQGAGALAANPV 938
Query: 3862 FHARTKHIEVDVHFIREK*LLKTL 3933
FH+RTKHIEVDV ++RE+ L K L
Sbjct: 939 FHSRTKHIEVDVXYVREQVLDKKL 962
Score = 33.5 bits (75), Expect(4) = e-129
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +3
Query: 3912 KIAAKDVEVRFLPSEDQVADVLTKPIVAAQFHNLCSKLSL 4031
++ K + V ++PS +Q AD+ TKP+ +F L +KL+L
Sbjct: 956 QVLDKKLVVSYVPSVEQXADLFTKPLSIPRFQYLLTKLNL 995
Score = 22.3 bits (46), Expect(4) = e-129
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3
Query: 2454 MLTRSKLGIFKPK 2492
M TRSK+G KPK
Sbjct: 460 MTTRSKVGTIKPK 472
Score = 93.6 bits (231), Expect = 1e-15
Identities = 60/180 (33%), Positives = 88/180 (48%), Gaps = 8/180 (4%)
Frame = +1
Query: 4 WRLQILSTVDAHGFEGFLFGSVPIPPKLVDGEV--------NLEYTLWIRRDQLMFSWII 159
WR Q+L + AH + L G +P PP+ N EY W+ D + SWI+
Sbjct: 55 WRSQVLPSARAHRLDQILIGKLPKPPRFSQSTSVNSSQPTSNPEYDQWVILDXFLLSWIL 114
Query: 160 ASISESMLGYITRCTTSSDLWSVLETAFRSQPRARVQHLKAQLHSSKKGDLSISDYILHM 339
ASISE+M G++ C TS+++WSVLE F +SDY
Sbjct: 115 ASISEAMYGHVVNCQTSAEVWSVLEKLF------------------------VSDY--KS 148
Query: 340 QGITDNIHAAGYESIVVNLTARAEELTLQDVQYAQQTHEMRLQQQISTESVHLHAPPAAH 519
+ + +HA + R+E ++LQ+V Y Q+HE+RL +Q+S SV + PPAAH
Sbjct: 149 KNSSTTVHA-------TIIKERSEAISLQEVHYLLQSHEIRL-EQLSAASV-IDVPPAAH 199
>emb|CAN73924.1| hypothetical protein VITISV_041509 [Vitis vinifera]
Length = 1434
Score = 391 bits (1004), Expect(2) = e-125
Identities = 194/392 (49%), Positives = 263/392 (67%), Gaps = 1/392 (0%)
Frame = +2
Query: 2501 VTNTTCEPKSVTDALSNSQWKAAMDAEFSALVKNHTWDLIPFHSHMKI-DHKWVFRVKYN 2677
+ T EP++ + A N W AM++E+ AL++N+TW L+P S I +W++++KY
Sbjct: 852 IVQHTTEPRTYSQASKNDSWVQAMNSEYQALLRNNTWSLVPPPSSAHIVGCRWIYKLKYR 911
Query: 2678 PDGSIDQFKAHLVAKGFQQLPGVDYFDTFSPVVKPITIRLVFSLAVFRGWSIRHIDVNNA 2857
PDGSID+ KA LVA+GF Q PG+DYFDTFSPVVKP TIRL+ +LAV WS+R +DV NA
Sbjct: 912 PDGSIDRHKARLVAQGFTQTPGIDYFDTFSPVVKPCTIRLILALAVSFQWSVRQLDVENA 971
Query: 2858 FLYGDLKEDVYMSQPTGYVDNSKPTHVCKLVKSIYGLKQAPKSWNDKLKFHLLSLGFLVS 3037
FL GDL+E+V+M+QP G+V+ + PT+VCKL K++YGLKQAP++W KL+ LL GF S
Sbjct: 972 FLNGDLEEEVFMTQPQGFVNPTYPTYVCKLHKALYGLKQAPRAWFQKLRIALLDYGFQSS 1031
Query: 3038 QSDSCLFYQRIQSHXXXXXXXXXXXXXMGDDSKLVTHVIDGIQISFSLKHLARVSYFLGI 3217
++D+ LF + G + LV+H I ++ F+L+ L +SYFLGI
Sbjct: 1032 RADTSLFIFHTATDILILLVYVDDILVTGSNPMLVSHFISYLRTKFALRDLGPLSYFLGI 1091
Query: 3218 QVNYIGAGILLN*SKYILDLLKKTNMEDYNPCATPPCINQKLYLQDSALLENPTLYRITV 3397
Q +G+ + LN KYI DLL +T ME P TP + + L D L +P+ YR TV
Sbjct: 1092 QAQQLGSVLHLNQHKYIADLLNRTQMETSKPAPTPGRLGRTLSQSDGMSLSDPSEYRRTV 1151
Query: 3398 GALQYLTLTRPDISFIVNKLSQFLHAPTLSHWGACKRVLRYLRDSMTQGLLFQSSPRMNL 3577
GALQY+TLTRPDI+F VNK QF+ P+ HW A KR+LRYL+ ++ GL FQ + M L
Sbjct: 1152 GALQYVTLTRPDIAFAVNKACQFMAKPSDVHWMAVKRILRYLKGTIHLGLHFQPAASMEL 1211
Query: 3578 ESFADADWASSMDDRRSTSGYCAFLGPNIIAW 3673
+ ++DADWAS DDRRSTSGYC FLG N+I+W
Sbjct: 1212 QGYSDADWASCPDDRRSTSGYCVFLGSNLISW 1243
Score = 90.5 bits (223), Expect(2) = e-125
Identities = 48/100 (48%), Positives = 66/100 (66%)
Frame = +1
Query: 3646 ISWAQYHCVEFQKKQSVVARSSTETEYHSLASVTTELIWIKSFFAELGLAILPRSVI*CD 3825
ISW+ KQ +V++SS E+EY L S+T EL+WI+S EL L P ++ CD
Sbjct: 1241 ISWSS-------SKQRLVSKSSAESEYRGLVSLTAELVWIQSLLQELCLPTSP-PILWCD 1292
Query: 3826 NISAISLASNPGFHARTKHIEVDVHFIREK*LLKTLKFVF 3945
N SA LA+NP FH+R+KHIE+D+HFIREK L + L+ +
Sbjct: 1293 NQSAAHLAANPVFHSRSKHIELDLHFIREKVLRQELQICY 1332
Score = 135 bits (340), Expect(2) = 1e-37
Identities = 64/127 (50%), Positives = 87/127 (68%), Gaps = 1/127 (0%)
Frame = +2
Query: 1769 PYTHQQNGKPKRKHQHIVNVGLSFLAHSNIPYCFWWDAFVSAIFTINRRPTSTLNHLSPF 1948
P+T QQNG+ +RK +H+V GL+ +A S +P +W AF +A++ IN P L+ SP
Sbjct: 630 PHTPQQNGRAERKIRHLVETGLALMAQSFLPSKYWTYAFQTAVYLINLLPAKLLHFQSPT 689
Query: 1949 QKLFGSIPDYNFLKSFGCACYPYLRLYNQSKLQFRSTKCVFLGYSPAHKGYRCLSPS-GK 2125
Q LF +P+Y+ L+ FGC C+P LR Y Q KL +RST CVFLGY+PAHKGY CL S +
Sbjct: 690 QTLFHKLPNYHHLRVFGCLCFPSLRPYTQHKLCYRSTACVFLGYAPAHKGYLCLDVSTNR 749
Query: 2126 IYVARTV 2146
IY++R V
Sbjct: 750 IYISRNV 756
Score = 52.8 bits (125), Expect(2) = 1e-37
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Frame = +3
Query: 1521 GPA-SISSNGYKYYIHFVDDFTNYTWICPLNTKGEALTALKHFNSVVKTQVNSHIHTFQC 1697
GPA S S G +Y++ F+DD++ +TWI L+TK +AL + F +V+ Q+ + I Q
Sbjct: 546 GPAPSTSITGARYFLIFIDDYSRHTWIYFLSTKDQALQSFITFRKMVENQLQTTIKCIQS 605
Query: 1698 DWGG*FRPIAYFLSS 1742
D GG F +L +
Sbjct: 606 DNGGEFLAFKPYLEA 620
Score = 109 bits (273), Expect = 2e-20
Identities = 63/196 (32%), Positives = 105/196 (53%), Gaps = 26/196 (13%)
Frame = +1
Query: 4 WRLQILSTVDAHGFEGFLFGSVPIPPK-LVDGEVNLEYTLWIRRDQLMFSWIIASISESM 180
W+ Q+ + V A+GFE ++ G+ PPK L G++N ++ W R D+++ SW+ ++++ +
Sbjct: 42 WKTQMENVVYANGFEDYIEGTKSCPPKELPTGDLNPDFVQWRRFDRMVLSWMYSTLNPDI 101
Query: 181 LGYITRCTTSSDLWSVLETAFRSQPRARVQHLKAQLHSSKKGDLSISDYILHMQGITDNI 360
+G I TS + W L F + +AR+ L+ + ++KKG ++ DYIL M+ I+DN+
Sbjct: 102 MGQIVGFQTSHEAWMALHKIFSASSKARIMQLRLEFQTTKKGGDAMLDYILKMKTISDNL 161
Query: 361 HAAG-------------------YESIVVNLTARAEELTLQDVQYAQQTHEMRLQQQIST 483
A G Y SIV +LTAR ++L+L V THE RL Q S+
Sbjct: 162 AAVGEPVKERDHILQLLGGLGPDYNSIVASLTAREDDLSLHSVHSILLTHEQRLHLQHSS 221
Query: 484 ------ESVHLHAPPA 513
S H+ + P+
Sbjct: 222 PTDPSFASAHMASVPS 237
Score = 79.0 bits (193), Expect(2) = 2e-18
Identities = 54/167 (32%), Positives = 79/167 (47%), Gaps = 5/167 (2%)
Frame = +1
Query: 1093 NLLSIPQFTKDNRVFIEFHHDSCFVKDKLTHRILLKGSLQGGLYQLDLTPLQPQSSANLH 1272
NL+S+ +F DN VF E H FVKD++T +ILLKG L+ GLY+ S
Sbjct: 414 NLISVSKFXTDNAVFFEXHSSCFFVKDQVTKKILLKGWLRDGLYE-----FSSSSPPRAF 468
Query: 1273 SSTAQFSNSANIVVSDVNLWQKRLGHCSSAVLNNVLKQIKGFNSSSQLEF-----CHACQ 1437
+T FS+ A +W RLGH + +L+ K + N S L+ C C
Sbjct: 469 VTTGSFSDGA--------IWHSRLGHPAVPILS---KALASCNPSVTLQINKIAPCIICP 517
Query: 1438 LGKLKSVSFPPVESKTTAPFQLVYSDVWVLLPFLVMVTNIIYILLMI 1578
L K S+ + S + P L+++D+W P +T Y L+ I
Sbjct: 518 LAKSHSLPYSLSSSHASHPLALIHTDLWGPAP-STSITGARYFLIFI 563
Score = 45.1 bits (105), Expect(2) = 2e-18
Identities = 17/41 (41%), Positives = 29/41 (70%)
Frame = +2
Query: 869 PGNESAWFMDSGATAHVTSDLKNLSLQSAYTGSDKLTIGNG 991
P ++ +WF D+GAT H++ + LS Y+G+D++TIG+G
Sbjct: 340 PDHQDSWFFDTGATHHLSHSAQTLSCVQPYSGTDQVTIGDG 380
>emb|CAN78451.1| hypothetical protein VITISV_005945 [Vitis vinifera]
Length = 773
Score = 389 bits (998), Expect(2) = e-125
Identities = 192/392 (48%), Positives = 261/392 (66%), Gaps = 1/392 (0%)
Frame = +2
Query: 2501 VTNTTCEPKSVTDALSNSQWKAAMDAEFSALVKNHTWDLIPFHSHMKI-DHKWVFRVKYN 2677
+ T EP++ + A N W AM++E+ AL++N+TW L+P S I +W++++KY
Sbjct: 199 IVQHTTEPRTYSQAFKNDSWVQAMNSEYQALLRNNTWSLVPPPSSAHIVGCRWIYKLKYR 258
Query: 2678 PDGSIDQFKAHLVAKGFQQLPGVDYFDTFSPVVKPITIRLVFSLAVFRGWSIRHIDVNNA 2857
PDGSID+ KA LVA+GF Q PG+DYFDTFSPVVKP TIRL+ +LAV WS+R +DV N
Sbjct: 259 PDGSIDRHKARLVAQGFTQTPGIDYFDTFSPVVKPCTIRLILALAVSFQWSVRQLDVENG 318
Query: 2858 FLYGDLKEDVYMSQPTGYVDNSKPTHVCKLVKSIYGLKQAPKSWNDKLKFHLLSLGFLVS 3037
FL GDL+E+V+M+QP G+V+ + PT+VCKL K++YGLKQAP++W KL+ LL GF S
Sbjct: 319 FLNGDLEEEVFMTQPQGFVNPTYPTYVCKLHKALYGLKQAPRAWFQKLRIALLDYGFQSS 378
Query: 3038 QSDSCLFYQRIQSHXXXXXXXXXXXXXMGDDSKLVTHVIDGIQISFSLKHLARVSYFLGI 3217
++D+ LF + G + LV+H I ++ F+L+ L +SYFLGI
Sbjct: 379 RADTSLFIFHTATDILILLVYVDDILVTGSNPTLVSHFISYLRTKFALRDLGPLSYFLGI 438
Query: 3218 QVNYIGAGILLN*SKYILDLLKKTNMEDYNPCATPPCINQKLYLQDSALLENPTLYRITV 3397
Q +G+ + LN KYI DLL +T ME P TP + + L D L +P+ YR TV
Sbjct: 439 QAQQLGSVLHLNQHKYIADLLNRTQMETSKPAPTPGRLGRTLSQSDGVSLSDPSEYRRTV 498
Query: 3398 GALQYLTLTRPDISFIVNKLSQFLHAPTLSHWGACKRVLRYLRDSMTQGLLFQSSPRMNL 3577
GALQY+TLTRPDI+F VNK QF+ P+ HW A KR+LRYL+ ++ GL FQ + M
Sbjct: 499 GALQYVTLTRPDIAFAVNKACQFMAKPSDVHWMAVKRILRYLKGTIHLGLHFQPAASMEX 558
Query: 3578 ESFADADWASSMDDRRSTSGYCAFLGPNIIAW 3673
+ ++DADWAS DDRRSTSGYC FLG N+I+W
Sbjct: 559 QGYSDADWASCPDDRRSTSGYCVFLGSNLISW 590
Score = 90.5 bits (223), Expect(2) = e-125
Identities = 48/100 (48%), Positives = 66/100 (66%)
Frame = +1
Query: 3646 ISWAQYHCVEFQKKQSVVARSSTETEYHSLASVTTELIWIKSFFAELGLAILPRSVI*CD 3825
ISW+ KQ +V++SS E+EY L S+T EL+WI+S EL L P ++ CD
Sbjct: 588 ISWSS-------SKQRLVSKSSAESEYRGLVSLTAELVWIQSLLQELCLPTSP-PILWCD 639
Query: 3826 NISAISLASNPGFHARTKHIEVDVHFIREK*LLKTLKFVF 3945
N SA LA+NP FH+R+KHIE+D+HFIREK L + L+ +
Sbjct: 640 NQSAAHLAANPVFHSRSKHIELDLHFIREKVLRQELQICY 679
Score = 108 bits (271), Expect = 2e-20
Identities = 52/103 (50%), Positives = 69/103 (66%), Gaps = 1/103 (0%)
Frame = +2
Query: 1841 LAHSNIPYCFWWDAFVSAIFTINRRPTSTLNHLSPFQKLFGSIPDYNFLKSFGCACYPYL 2020
+A S +P +W AF +A++ IN P L+ SP Q LF +P+Y+ L+ FGC C+P L
Sbjct: 1 MAQSFLPSKYWTYAFQTAVYLINLLPAKLLHFQSPTQTLFHKLPNYHHLRVFGCLCFPSL 60
Query: 2021 RLYNQSKLQFRSTKCVFLGYSPAHKGYRCLSPS-GKIYVARTV 2146
R Y Q KL +RST CVFLGY+PAHKGY CL S +IY++R V
Sbjct: 61 RPYTQHKLCYRSTACVFLGYAPAHKGYLCLDVSTNRIYISRNV 103
>emb|CAN67403.1| hypothetical protein VITISV_025614 [Vitis vinifera]
Length = 1271
Score = 369 bits (946), Expect(3) = e-123
Identities = 184/386 (47%), Positives = 251/386 (65%), Gaps = 1/386 (0%)
Frame = +2
Query: 2519 EPKSVTDALSNSQWKAAMDAEFSALVKNHTWDLIPFHSHMKI-DHKWVFRVKYNPDGSID 2695
EP + T A+ +S W AM+ EFSAL +N+TW L+P S+ I KWV+++KY PDG++D
Sbjct: 711 EPTTFTQAVKDSNWVLAMEKEFSALQRNNTWHLVPPPSNGNIIGCKWVYKLKYKPDGTVD 770
Query: 2696 QFKAHLVAKGFQQLPGVDYFDTFSPVVKPITIRLVFSLAVFRGWSIRHIDVNNAFLYGDL 2875
++KA LVA+GF Q G++YF+TFSPVVK TIR++ ++A+ WS+ +DV NAFL+GDL
Sbjct: 771 RYKARLVAQGFTQTLGLBYFETFSPVVKASTIRIILAVALSFNWSVHQLDVQNAFLHGDL 830
Query: 2876 KEDVYMSQPTGYVDNSKPTHVCKLVKSIYGLKQAPKSWNDKLKFHLLSLGFLVSQSDSCL 3055
+E V+M QP G++++ P+HVCKL K++YGLKQAP++W +KL LL GF S++DS +
Sbjct: 831 EEHVFMQQPPGFINSQYPSHVCKLNKALYGLKQAPRAWYNKLSTSLLGWGFQASRADSSM 890
Query: 3056 FYQRIQSHXXXXXXXXXXXXXMGDDSKLVTHVIDGIQISFSLKHLARVSYFLGIQVNYIG 3235
F G S V+ I + SF+L+ L V+YFLGI+V G
Sbjct: 891 FIHHSTHDVLILLIYVDDILVTGSSSAQVSSFITRLNSSFALRDLGYVNYFLGIEVVRSG 950
Query: 3236 AGILLN*SKYILDLLKKTNMEDYNPCATPPCINQKLYLQDSALLENPTLYRITVGALQYL 3415
L+ KY DLL +T M D P TP + Q L D + TLYR TVGALQYL
Sbjct: 951 TMFHLSQHKYTQDLLSRTAMLDSKPATTPGLLGQTLSHLDGEPFSDATLYRSTVGALQYL 1010
Query: 3416 TLTRPDISFIVNKLSQFLHAPTLSHWGACKRVLRYLRDSMTQGLLFQSSPRMNLESFADA 3595
TLTRPDISF VNK QF+ PT +HW A KR+LRYL+ +++ G+ Q S +++ + DA
Sbjct: 1011 TLTRPDISFAVNKACQFMATPTTTHWLAVKRILRYLKGTLSYGIQMQQSTSLDIHGYTDA 1070
Query: 3596 DWASSMDDRRSTSGYCAFLGPNIIAW 3673
DWAS DDRRST GY FLGPN+++W
Sbjct: 1071 DWASCPDDRRSTGGYGIFLGPNLVSW 1096
Score = 91.7 bits (226), Expect(3) = e-123
Identities = 49/96 (51%), Positives = 64/96 (66%)
Frame = +1
Query: 3646 ISWAQYHCVEFQKKQSVVARSSTETEYHSLASVTTELIWIKSFFAELGLAILPRSVI*CD 3825
+SW+ KQ VV+RSS E+EY +LAS T+E+IWI+ EL L+ ++ CD
Sbjct: 1094 VSWSS-------NKQKVVSRSSAESEYRALASATSEMIWIQYVLQELCLSSSSPPLLWCD 1146
Query: 3826 NISAISLASNPGFHARTKHIEVDVHFIREK*LLKTL 3933
N SA LA+NP FHARTKHIE+D+HFIR+ L K L
Sbjct: 1147 NKSAAHLAANPVFHARTKHIEMDLHFIRDHVLRKQL 1182
Score = 36.6 bits (83), Expect(3) = e-123
Identities = 16/39 (41%), Positives = 28/39 (71%)
Frame = +3
Query: 3915 IAAKDVEVRFLPSEDQVADVLTKPIVAAQFHNLCSKLSL 4031
+ K + +++LPS +QVAD+ TK I ++QF + +KLS+
Sbjct: 1177 VLRKQLVIQYLPSAEQVADIFTKHISSSQFLSFRTKLSV 1215
Score = 157 bits (397), Expect = 4e-35
Identities = 71/127 (55%), Positives = 95/127 (74%), Gaps = 1/127 (0%)
Frame = +2
Query: 1769 PYTHQQNGKPKRKHQHIVNVGLSFLAHSNIPYCFWWDAFVSAIFTINRRPTSTLNHLSPF 1948
PYT +QNG+ +RK +HI+ GL+ LA +++P+ FW AF + IF INR PT LN+ SPF
Sbjct: 479 PYTPEQNGRAERKLRHIIETGLALLATASLPFKFWLYAFHTTIFLINRLPTKVLNYQSPF 538
Query: 1949 QKLFGSIPDYNFLKSFGCACYPYLRLYNQSKLQFRSTKCVFLGYSPAHKGYRCLSP-SGK 2125
Q LFG P+Y+ K FGC CYPY+R YN++KL +RS++CVFLGYS HKGY CL+P +G+
Sbjct: 539 QILFGKSPNYHIFKIFGCLCYPYIRPYNKNKLSYRSSQCVFLGYSSNHKGYMCLNPLTGR 598
Query: 2126 IYVARTV 2146
+YV R V
Sbjct: 599 LYVTRHV 605
Score = 93.2 bits (230), Expect(3) = 1e-29
Identities = 58/196 (29%), Positives = 95/196 (48%), Gaps = 23/196 (11%)
Frame = +1
Query: 4 WRLQILSTVDAHGFEGFLFGSVPIPP-KLVDGEVNLEYTLWIRRDQLMFSWIIASISESM 180
WR Q+ + V A+GFE + G PP K GE N ++ +W R D+++ SWI +S++ +
Sbjct: 151 WRTQMENVVFANGFEDHIEGLKICPPQKTSSGETNPDFVMWRRFDRMILSWIYSSLTPEI 210
Query: 181 LGYITRCTTSSDLWSVLETAFRSQPRARVQHLKAQLHSSKKGDLSISDYILHMQGITDNI 360
+G I +S W LE F + RARV L+ + +++KG L++ +YIL ++ + DN+
Sbjct: 211 MGQIVGYQSSHAAWFALERIFSASSRARVMQLRLEFQTTRKGSLTMMEYILKLKSLADNL 270
Query: 361 HAAG-------------------YESIVVNLTARAEELTLQDVQYAQQTHEMRLQQQIST 483
A G Y SIV +LTA Y+ + Q ++
Sbjct: 271 AAIGEPVTDRDQILQLLGGLGADYNSIVASLTAPF---------YSPMKQRLSFQNSVAE 321
Query: 484 ESV---HLHAPPAAHF 522
++V +L P HF
Sbjct: 322 DNVISANLATPQYQHF 337
Score = 44.3 bits (103), Expect(3) = 1e-29
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = +3
Query: 627 NRPSCQICGKNNHIASKCFKRFDVNFTGVDLSSAQAHYMSNVPDMSNLLVQILA 788
+RP CQ+CGK H +C+ RFD+NF G + + +N P+ N + ++A
Sbjct: 367 HRPQCQLCGKFGHTVVRCYHRFDINFQGYNPNMDTV--QTNKPNAKNQVQAMMA 418
Score = 44.3 bits (103), Expect(3) = 1e-29
Identities = 18/43 (41%), Positives = 27/43 (62%)
Frame = +2
Query: 875 NESAWFMDSGATAHVTSDLKNLSLQSAYTGSDKLTIGNGFKWY 1003
++ AWF D+GAT H++ + LS Y G+DK+ +GN F Y
Sbjct: 424 SDEAWFFDTGATHHLSQSIDPLSDVQPYMGNDKVIVGNAFSSY 466
>gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group]
gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1256
Score = 377 bits (968), Expect(2) = e-122
Identities = 192/400 (48%), Positives = 258/400 (64%), Gaps = 3/400 (0%)
Frame = +2
Query: 2483 QT*TYNVTNTTCEPKSVTDALSNSQWKAAMDAEFSALVKNHTWDLIPFHSHMKI-DHKWV 2659
+T Y TT EP+ + DAL ++ WK AMDA+F+AL+ N TW L+P I D+KWV
Sbjct: 735 RTVKYGCLTTTGEPRDLHDALHDTNWKHAMDAKFTALLHNKTWHLVPPQKGRNIIDYKWV 794
Query: 2660 FRVKYNPDGSIDQFKAHLVAKGFQQLPGVDYFDTFSPVVKPITIRLVFSLAVFRGWSIRH 2839
+++K DGS+D++KA LVAKGF+Q G+DY DTFSPVVK TIR++ S+AV RGW++R
Sbjct: 795 YKIKRKQDGSLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILSIAVSRGWTLRQ 854
Query: 2840 IDVNNAFLYGDLKEDVYMSQPTGYVDNSKPTHVCKLVKSIYGLKQAPKSWNDKLKFHLLS 3019
+DV NAFL+G L+E+VYM QP GY D P +VCKL K++YGLKQAP++W KL L
Sbjct: 855 LDVQNAFLHGILEEEVYMKQPPGYEDKVHPDYVCKLDKALYGLKQAPRAWYAKLSQKLQH 914
Query: 3020 LGFLVSQSDSCLFYQRIQSHXXXXXXXXXXXXXMGDDSKLVTHVIDGIQISFSLKHLARV 3199
LGF S++D+ LF+ V ++ +Q F+LK L +
Sbjct: 915 LGFQGSKADTSLFFYNKGGLIIFVLVYVDDIIVASSRQDAVPALLKDLQKDFALKDLGDL 974
Query: 3200 SYFLGIQVNYIGAGILLN*SKYILDLLKKTNMEDYNPCATPPCINQKLYLQDSALL--EN 3373
YFLGI+VN +GI+L KY+ DLL++ M D P +TP ++KL L + LL +
Sbjct: 975 HYFLGIEVNKASSGIVLTQEKYVTDLLRRVGMTDCKPVSTPLSTSEKLTLHEGDLLGPND 1034
Query: 3374 PTLYRITVGALQYLTLTRPDISFIVNKLSQFLHAPTLSHWGACKRVLRYLRDSMTQGLLF 3553
+ YR VGALQYLTLTRPDI F VNK+ QFLHAPT+ HW A KR+LRYL+ GL
Sbjct: 1035 ASNYRSVVGALQYLTLTRPDIYFPVNKVCQFLHAPTIVHWAAMKRILRYLKQCTKLGLKI 1094
Query: 3554 QSSPRMNLESFADADWASSMDDRRSTSGYCAFLGPNIIAW 3673
S M + ++DADWA ++DDRRST G+ FLG N+++W
Sbjct: 1095 SKSKSMLVSGYSDADWAGNIDDRRSTGGFAVFLGDNLVSW 1134
Score = 94.0 bits (232), Expect(2) = e-122
Identities = 46/88 (52%), Positives = 62/88 (70%)
Frame = +1
Query: 3682 KKQSVVARSSTETEYHSLASVTTELIWIKSFFAELGLAILPRSVI*CDNISAISLASNPG 3861
KKQ+ V RSSTE+EY +LA+ T E++WI++ EL + P + + CDN+ A L+SNP
Sbjct: 1137 KKQATVPRSSTESEYKALANATAEIMWIQTLLEELSVPSPPMARLWCDNLGAKYLSSNPV 1196
Query: 3862 FHARTKHIEVDVHFIREK*LLKTLKFVF 3945
FHARTKHIEVD HF+RE+ K L+ F
Sbjct: 1197 FHARTKHIEVDYHFVRERMQRKLLEVEF 1224
Score = 161 bits (407), Expect(2) = 6e-48
Identities = 72/127 (56%), Positives = 94/127 (74%), Gaps = 1/127 (0%)
Frame = +2
Query: 1769 PYTHQQNGKPKRKHQHIVNVGLSFLAHSNIPYCFWWDAFVSAIFTINRRPTSTLNHLSPF 1948
P+THQQNG +RKH+HIV VGLS LAH+++P FW +A+ S ++ INR PT L + SP
Sbjct: 436 PHTHQQNGSAERKHRHIVEVGLSLLAHASLPLKFWDEAYQSGVYLINRMPTKVLGYSSPL 495
Query: 1949 QKLFGSIPDYNFLKSFGCACYPYLRLYNQSKLQFRSTKCVFLGYSPAHKGYRCL-SPSGK 2125
+ LF PDY L++FGCAC+P LR YN K+ FRS +C FLGYSP HKG+RCL S +G+
Sbjct: 496 ECLFKQTPDYQALRTFGCACWPDLRPYNSHKMHFRSKRCTFLGYSPLHKGFRCLDSSTGR 555
Query: 2126 IYVARTV 2146
IY++R V
Sbjct: 556 IYISRDV 562
Score = 61.6 bits (148), Expect(2) = 6e-48
Identities = 26/77 (33%), Positives = 42/77 (54%)
Frame = +3
Query: 1521 GPASISSNGYKYYIHFVDDFTNYTWICPLNTKGEALTALKHFNSVVKTQVNSHIHTFQCD 1700
GPA ++ G KYY+ F+D F+ +TWI L K E + F +V+ N I + Q D
Sbjct: 353 GPAPVAGGGKKYYVSFIDAFSRFTWIYFLKYKSEVFQKFQEFQCLVERMFNRKIISMQTD 412
Query: 1701 WGG*FRPIAYFLSSLKV 1751
WGG ++ + F + + +
Sbjct: 413 WGGEYQKLNTFFNKIGI 429
Score = 75.5 bits (184), Expect = 5e-10
Identities = 43/184 (23%), Positives = 90/184 (48%), Gaps = 27/184 (14%)
Frame = +1
Query: 4 WRLQILSTVDAHGFEGFLFGSVPIPPKLV-----DGEVNLEYTL---WIRRDQLMFSWII 159
W++Q+L+ + + +L G+ P + + EV + WI DQ + +++
Sbjct: 30 WKVQVLAVIRGARLDSYLTGATKKPSATIIIKKNEKEVEVSNPAVDEWIANDQQVLGYLL 89
Query: 160 ASISESMLGYITRCTTSSDLWSVLETAFRSQPRARVQHLKAQLHSSKKGDLSISDYILHM 339
++S +L + C++++ LWS +E F S RAR + K L ++KKGDL I++Y+ M
Sbjct: 90 TTMSRDVLSQVATCSSAASLWSTIEGMFSSATRARSINTKIALTNTKKGDLGIAEYVSKM 149
Query: 340 QGITDNIHAAG-------------------YESIVVNLTARAEELTLQDVQYAQQTHEMR 462
+ + D + +G +E I+ +L +++E ++L + + E R
Sbjct: 150 RVLADELATSGKPVDEEDLISYIIAGLDEDFEPIISSLVSKSEHVSLGEAYSQLLSFEQR 209
Query: 463 LQQQ 474
++ +
Sbjct: 210 MKMR 213
>dbj|BAH94406.1| Os08g0544300 [Oryza sativa Japonica Group]
Length = 821
Score = 379 bits (972), Expect(2) = e-122
Identities = 188/388 (48%), Positives = 260/388 (67%), Gaps = 3/388 (0%)
Frame = +2
Query: 2519 EPKSVTDALSNSQWKAAMDAEFSALVKNHTWDLIPFHSHMK-IDHKWVFRVKYNPDGSID 2695
EP+S+ +A++N WK AMDAE+ AL++N TW L+P ID KWV++VK DGS+D
Sbjct: 306 EPQSLEEAVNNKHWKEAMDAEYMALIENKTWHLVPPQKGRNVIDCKWVYKVKRKADGSLD 365
Query: 2696 QFKAHLVAKGFQQLPGVDYFDTFSPVVKPITIRLVFSLAVFRGWSIRHIDVNNAFLYGDL 2875
++KA LVAKGF+Q G+DY DTFSPVVK TIR+V SLAV RGWS+R +DV NAFL+G L
Sbjct: 366 RYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIVLSLAVSRGWSLRQLDVKNAFLHGVL 425
Query: 2876 KEDVYMSQPTGYVDNSKPTHVCKLVKSIYGLKQAPKSWNDKLKFHLLSLGFLVSQSDSCL 3055
+E+VYM QP GY S P +VCKL K++YGLKQAP++W +L L LGF+ S++D+ L
Sbjct: 426 EEEVYMEQPPGYEKKSMPNYVCKLDKALYGLKQAPRAWYSRLSTKLSELGFVPSKADTSL 485
Query: 3056 FYQRIQSHXXXXXXXXXXXXXMGDDSKLVTHVIDGIQISFSLKHLARVSYFLGIQVNYIG 3235
F+ + + ++ + F+LK L + YFLGI+V+ +
Sbjct: 486 FFYKKGQVSIFLLIYVDDIIMASSVPDATSTLLQELSKDFALKDLGDLHYFLGIEVHKVK 545
Query: 3236 AGILLN*SKYILDLLKKTNMEDYNPCATPPCINQKLYLQDSALL--ENPTLYRITVGALQ 3409
G++L+ KY DLL++ M + P +TP ++KL + + LL ++ T YR VGALQ
Sbjct: 546 DGLMLSQEKYASDLLRRVGMYECKPVSTPLSTSEKLSVNEGTLLGPQDSTQYRSVVGALQ 605
Query: 3410 YLTLTRPDISFIVNKLSQFLHAPTLSHWGACKRVLRYLRDSMTQGLLFQSSPRMNLESFA 3589
YLTLTRPDISF +NK+ QFLHAPT +HW A KR+LRY++ ++ GL F +P + + F+
Sbjct: 606 YLTLTRPDISFSINKVCQFLHAPTTTHWAAVKRILRYVKYTVDTGLKFCRNPSLLVSGFS 665
Query: 3590 DADWASSMDDRRSTSGYCAFLGPNIIAW 3673
DADWA S DDRRST G+ FLGPN+++W
Sbjct: 666 DADWAGSPDDRRSTGGFAVFLGPNLVSW 693
Score = 91.3 bits (225), Expect(2) = e-122
Identities = 43/92 (46%), Positives = 63/92 (68%)
Frame = +1
Query: 3682 KKQSVVARSSTETEYHSLASVTTELIWIKSFFAELGLAILPRSVI*CDNISAISLASNPG 3861
+KQ+ V+RSSTE EY +LA+ T E++W+++ ELG+ + + CDN+ A L++NP
Sbjct: 696 RKQATVSRSSTEAEYKALANATAEIMWVQTLLQELGVESPRAAKLWCDNLGAKYLSANPI 755
Query: 3862 FHARTKHIEVDVHFIREK*LLKTLKFVFCLPK 3957
FHARTKHIEVD HF+RE+ K L+ + K
Sbjct: 756 FHARTKHIEVDFHFVRERVARKLLEIAYISTK 787
Score = 102 bits (255), Expect = 2e-18
Identities = 47/98 (47%), Positives = 67/98 (68%), Gaps = 1/98 (1%)
Frame = +2
Query: 1856 IPYCFWWDAFVSAIFTINRRPTSTLNHLSPFQKLFGSIPDYNFLKSFGCACYPYLRLYNQ 2035
+P FW +A ++A + INR P+ +N P ++LF P+Y L+ FGCA +P LR YN+
Sbjct: 1 MPIKFWDEAVLAAAYLINRTPSKVINFACPLEQLFKEKPNYTALRIFGCAVWPNLRPYNK 60
Query: 2036 SKLQFRSTKCVFLGYSPAHKGYRCLS-PSGKIYVARTV 2146
KL FRS +CVFLGYS HKG++CL +G++YV+R V
Sbjct: 61 HKLAFRSKRCVFLGYSNLHKGFKCLEIATGRVYVSRDV 98
>gb|KHN36156.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Glycine soja]
Length = 1417
Score = 371 bits (952), Expect(2) = e-121
Identities = 193/390 (49%), Positives = 260/390 (66%), Gaps = 5/390 (1%)
Frame = +2
Query: 2519 EPKSVTDALSNSQWKAAMDAEFSALVKNHTWDLIPFHSHMK-IDHKWVFRVKYNPDGSID 2695
EPKSV AL++ W AM AE+ AL+ N TW L+P H K I KW+FRVK NPDG+++
Sbjct: 911 EPKSVKSALNDPAWLQAMQAEYKALMDNQTWTLVPLPQHRKAIGCKWIFRVKENPDGTVN 970
Query: 2696 QFKAHLVAKGFQQLPGVDYFDTFSPVVKPITIRLVFSLAVFRGWSIRHIDVNNAFLYGDL 2875
+FKA LVAKGF Q G D+ +TFSPV+KPITIR++ +LAV WS++ IDVNNAFL G L
Sbjct: 971 KFKARLVAKGFLQTAGFDFTETFSPVIKPITIRIILTLAVTFKWSVQQIDVNNAFLNGIL 1030
Query: 2876 KEDVYMSQPTGYVDNSKPTHVCKLVKSIYGLKQAPKSWNDKLKFHLLSLGFLVSQSDSCL 3055
+E+VYM+QP G+ + S + VCKL KS+YGLKQAP++W D+L LL LGF+ S+ D L
Sbjct: 1031 QEEVYMTQPAGF-EASDKSLVCKLHKSLYGLKQAPRAWYDRLTQALLQLGFVKSKCDPSL 1089
Query: 3056 FYQRIQSHXXXXXXXXXXXXXMGDDSKLVTHVIDGIQISFSLKHLARVSYFLGIQVNYIG 3235
G L++ +I + + F+LK L ++ YFLGI+V+++
Sbjct: 1090 LIHTQNGACTYVLIYVDDILITGSAPHLISDLIHKLNMKFALKQLGQIDYFLGIEVHHLP 1149
Query: 3236 AG-ILLN*SKYILDLLKKTNMEDYNPCATPPCINQKLYLQDSALLENPTLYRITVGALQY 3412
+G +LLN +KYI DLL K +MED P +P + +L S + +PTLYR VGALQY
Sbjct: 1150 SGALLLNQTKYIRDLLCKAHMEDSAPIGSPMVSSCRLSKYGSDTMTDPTLYRSIVGALQY 1209
Query: 3413 LTLTRPDISFIVNKLSQFLHAPTLSHWGACKRVLRYLRDSMTQGLLF---QSSPRMNLES 3583
TLTRPDI+F VNK+ QF+ P SHW A KR+LRYL +++ GLL +SP +L +
Sbjct: 1210 ATLTRPDIAFSVNKVCQFMAHPLESHWKAVKRILRYLNGTLSHGLLLTPSPTSPPFSLRA 1269
Query: 3584 FADADWASSMDDRRSTSGYCAFLGPNIIAW 3673
++DADWA+ DDRRSTSG C + GPN+I+W
Sbjct: 1270 YSDADWATDQDDRRSTSGSCIYFGPNLISW 1299
Score = 97.4 bits (241), Expect(2) = e-121
Identities = 49/99 (49%), Positives = 68/99 (68%)
Frame = +1
Query: 3646 ISWAQYHCVEFQKKQSVVARSSTETEYHSLASVTTELIWIKSFFAELGLAILPRSVI*CD 3825
ISW KKQ +VARSSTE EY S+A+ T +L+WI+S EL + L +++ CD
Sbjct: 1297 ISWGS-------KKQQLVARSSTEAEYRSMANTTADLLWIQSLLRELQVPFLTPTLL-CD 1348
Query: 3826 NISAISLASNPGFHARTKHIEVDVHFIREK*LLKTLKFV 3942
N+SA+SL+ NP H++TKHIE+D+HF+REK L K L +
Sbjct: 1349 NLSAVSLSHNPILHSKTKHIELDIHFVREKVLSKQLNIL 1387
Score = 140 bits (352), Expect(2) = 1e-44
Identities = 62/127 (48%), Positives = 90/127 (70%), Gaps = 1/127 (0%)
Frame = +2
Query: 1769 PYTHQQNGKPKRKHQHIVNVGLSFLAHSNIPYCFWWDAFVSAIFTINRRPTSTLNHL-SP 1945
P+T QNG +RKH+HIV +GL+ L+H+ +P FW +F A++ INR P+S + SP
Sbjct: 648 PHTSHQNGTVERKHRHIVEMGLTLLSHAALPLKFWDHSFTQAVYLINRLPSSAIPLFQSP 707
Query: 1946 FQKLFGSIPDYNFLKSFGCACYPYLRLYNQSKLQFRSTKCVFLGYSPAHKGYRCLSPSGK 2125
+ L S PDY+ +K FGC C+P+LR YN KLQ+RS+ CV+LG SP HKG++CL +G+
Sbjct: 708 YHALHQSQPDYSQIKVFGCLCFPHLRPYNNHKLQYRSSPCVYLGVSPQHKGHKCLDATGR 767
Query: 2126 IYVARTV 2146
IY+++ V
Sbjct: 768 IYISKDV 774
Score = 71.6 bits (174), Expect(2) = 1e-44
Identities = 37/91 (40%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Frame = +3
Query: 1491 PFSTCLFGCMGPAS-ISSNGYKYYIHFVDDFTNYTWICPLNTKGEALTALKHFNSVVKTQ 1667
PF GPA +S GY YYI FVD +T +TWI L K +AL A F ++++ Q
Sbjct: 554 PFEVIHCDLWGPAPFVSYYGYSYYITFVDTYTKFTWIYFLKAKSDALKAFTQFKALIQNQ 613
Query: 1668 VNSHIHTFQCDWGG*FRPIAYFLSSLKVQLR 1760
+ I Q DWGG FR L+ L +Q R
Sbjct: 614 FQASIKAIQSDWGGEFRAFTALLNELGIQHR 644
Score = 76.6 bits (187), Expect(2) = 5e-18
Identities = 50/169 (29%), Positives = 84/169 (49%), Gaps = 19/169 (11%)
Frame = +1
Query: 1090 QNLLSIPQFTKDNRVFIEFHHDSCFVKDKLTHRILLKGSL-QGGLYQLDLTPLQPQSSAN 1266
+NLLS+ +F +DN V EFH CFVK + + ++LL+G++ GLYQ S A
Sbjct: 401 KNLLSVSKFAQDNNVIFEFHPYHCFVKYQDSKQVLLEGTVGADGLYQFKPFKFLTNSGAA 460
Query: 1267 LHSSTAQFSNSANIVV--SDVN---------------LWQKRLGHCSSAVLNNVLKQIK- 1392
+S ++ S+S+ V + VN +W RLGH ++ + N+L
Sbjct: 461 SNSDSSSMSSSSQFSVFNNPVNCNNTVSVMQNGNVFQMWHLRLGHAHTSAVKNILNLCNI 520
Query: 1393 GFNSSSQLEFCHACQLGKLKSVSFPPVESKTTAPFQLVYSDVWVLLPFL 1539
F++ + C C +GK + P + T PF++++ D+W PF+
Sbjct: 521 PFSNKTATLPCTFCCMGKSHRLHSPLSNTVYTKPFEVIHCDLWGPAPFV 569
Score = 45.8 bits (107), Expect(2) = 5e-18
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = +2
Query: 875 NESAWFMDSGATAHVTSDLKNLSLQSAYTGSDKLTIGNG 991
+ AW+ DSGA+ H+T + NLS S YTG D++ +GNG
Sbjct: 327 SNGAWYPDSGASHHLTYNPNNLSYSSPYTGQDQVVMGNG 365
Score = 71.6 bits (174), Expect = 8e-09
Identities = 41/190 (21%), Positives = 97/190 (51%), Gaps = 27/190 (14%)
Frame = +1
Query: 4 WRLQILSTVDAHGFEGFLFG-SVPIPPKLVD----GEVNLEYTLWIRRDQLMFSWIIASI 168
W Q+ + AH F+ +P+ ++ G + EY W+ +DQ +F+W+++++
Sbjct: 13 WSQQVNGVITAHNLHRFVVNPQIPLQFASIEDCALGINSDEYQQWLIKDQTLFTWLLSTL 72
Query: 169 SESMLGYITRCTTSSDLWSVLETAFRSQPRARVQHLKAQLHSSKKGDLSISDYILHMQGI 348
S+ +L + C + ++W + F S ++R + L+++L ++KK S+++Y+L ++ I
Sbjct: 73 SDGVLPRVLSCRHAHEVWDKIHKYFNSVLKSRARQLRSELKNTKKLSRSVNEYLLRIKSI 132
Query: 349 TDNIHAAG-------------------YESIVVNLTARAEELTLQDVQ---YAQQTHEMR 462
+++ A G + S V+ + +R + T++DV+ Q+ +
Sbjct: 133 VNSLVAVGDMVSEQEQVDSILEGLPEEFNSFVMMVYSRFDTPTVEDVEALLLLQEAQFEK 192
Query: 463 LQQQISTESV 492
+Q++++ SV
Sbjct: 193 FKQELTSPSV 202
>gb|KHN22040.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Glycine soja]
Length = 1417
Score = 371 bits (952), Expect(2) = e-121
Identities = 193/390 (49%), Positives = 260/390 (66%), Gaps = 5/390 (1%)
Frame = +2
Query: 2519 EPKSVTDALSNSQWKAAMDAEFSALVKNHTWDLIPFHSHMK-IDHKWVFRVKYNPDGSID 2695
EPKSV AL++ W AM AE+ AL+ N TW L+P H K I KW+FRVK NPDG+++
Sbjct: 911 EPKSVKSALNDPAWLQAMQAEYKALMDNQTWTLVPLPQHRKAIGCKWIFRVKENPDGTVN 970
Query: 2696 QFKAHLVAKGFQQLPGVDYFDTFSPVVKPITIRLVFSLAVFRGWSIRHIDVNNAFLYGDL 2875
+FKA LVAKGF Q G D+ +TFSPV+KPITIR++ +LAV WS++ IDVNNAFL G L
Sbjct: 971 KFKARLVAKGFLQTAGFDFTETFSPVIKPITIRIILTLAVTFKWSVQQIDVNNAFLNGIL 1030
Query: 2876 KEDVYMSQPTGYVDNSKPTHVCKLVKSIYGLKQAPKSWNDKLKFHLLSLGFLVSQSDSCL 3055
+E+VYM+QP G+ + S + VCKL KS+YGLKQAP++W D+L LL LGF+ S+ D L
Sbjct: 1031 QEEVYMTQPAGF-EASDKSLVCKLHKSLYGLKQAPRAWYDRLTQALLQLGFVKSKCDPSL 1089
Query: 3056 FYQRIQSHXXXXXXXXXXXXXMGDDSKLVTHVIDGIQISFSLKHLARVSYFLGIQVNYIG 3235
G L++ +I + + F+LK L ++ YFLGI+V+++
Sbjct: 1090 LIHTQNGACTYVLIYVDDILITGSAPHLISDLIHKLNMKFALKQLGQIDYFLGIEVHHLP 1149
Query: 3236 AG-ILLN*SKYILDLLKKTNMEDYNPCATPPCINQKLYLQDSALLENPTLYRITVGALQY 3412
+G +LLN +KYI DLL K +MED P +P + +L S + +PTLYR VGALQY
Sbjct: 1150 SGALLLNQTKYIRDLLCKAHMEDSAPIGSPMVSSCRLSKYGSDTMTDPTLYRSIVGALQY 1209
Query: 3413 LTLTRPDISFIVNKLSQFLHAPTLSHWGACKRVLRYLRDSMTQGLLF---QSSPRMNLES 3583
TLTRPDI+F VNK+ QF+ P SHW A KR+LRYL +++ GLL +SP +L +
Sbjct: 1210 ATLTRPDIAFSVNKVCQFMAHPLESHWKAVKRILRYLNGTLSHGLLLTPSPTSPPFSLRA 1269
Query: 3584 FADADWASSMDDRRSTSGYCAFLGPNIIAW 3673
++DADWA+ DDRRSTSG C + GPN+I+W
Sbjct: 1270 YSDADWATDQDDRRSTSGSCIYFGPNLISW 1299
Score = 97.4 bits (241), Expect(2) = e-121
Identities = 49/99 (49%), Positives = 68/99 (68%)
Frame = +1
Query: 3646 ISWAQYHCVEFQKKQSVVARSSTETEYHSLASVTTELIWIKSFFAELGLAILPRSVI*CD 3825
ISW KKQ +VARSSTE EY S+A+ T +L+WI+S EL + L +++ CD
Sbjct: 1297 ISWGS-------KKQQLVARSSTEAEYRSMANTTADLLWIQSLLRELQVPFLTPTLL-CD 1348
Query: 3826 NISAISLASNPGFHARTKHIEVDVHFIREK*LLKTLKFV 3942
N+SA+SL+ NP H++TKHIE+D+HF+REK L K L +
Sbjct: 1349 NLSAVSLSHNPILHSKTKHIELDIHFVREKVLSKQLNIL 1387
Score = 140 bits (352), Expect(2) = 1e-44
Identities = 61/127 (48%), Positives = 91/127 (71%), Gaps = 1/127 (0%)
Frame = +2
Query: 1769 PYTHQQNGKPKRKHQHIVNVGLSFLAHSNIPYCFWWDAFVSAIFTINRRPTSTLNHL-SP 1945
P+T QNG +RKH+HIV +GL+ L+H+++P FW +F A++ INR P+S + SP
Sbjct: 648 PHTSHQNGTVERKHRHIVEMGLTLLSHADLPLKFWDHSFTQAVYLINRLPSSAIPLFQSP 707
Query: 1946 FQKLFGSIPDYNFLKSFGCACYPYLRLYNQSKLQFRSTKCVFLGYSPAHKGYRCLSPSGK 2125
+ L S PDY+ +K FGC C+P+LR YN KLQ++S+ CV+LG SP HKG++CL +G+
Sbjct: 708 YHALHQSQPDYSQIKVFGCLCFPHLRPYNNHKLQYKSSPCVYLGVSPQHKGHKCLDATGR 767
Query: 2126 IYVARTV 2146
IY+++ V
Sbjct: 768 IYISKDV 774
Score = 71.6 bits (174), Expect(2) = 1e-44
Identities = 37/91 (40%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Frame = +3
Query: 1491 PFSTCLFGCMGPAS-ISSNGYKYYIHFVDDFTNYTWICPLNTKGEALTALKHFNSVVKTQ 1667
PF GPA +S GY YYI FVD +T +TWI L K +AL A F ++++ Q
Sbjct: 554 PFEVIHCDLWGPAPFVSYYGYSYYITFVDTYTKFTWIYFLKAKSDALKAFTQFKALIQNQ 613
Query: 1668 VNSHIHTFQCDWGG*FRPIAYFLSSLKVQLR 1760
+ I Q DWGG FR L+ L +Q R
Sbjct: 614 FQASIKAIQSDWGGEFRAFTALLNELGIQHR 644
Score = 76.6 bits (187), Expect(2) = 5e-18
Identities = 50/169 (29%), Positives = 84/169 (49%), Gaps = 19/169 (11%)
Frame = +1
Query: 1090 QNLLSIPQFTKDNRVFIEFHHDSCFVKDKLTHRILLKGSL-QGGLYQLDLTPLQPQSSAN 1266
+NLLS+ +F +DN V EFH CFVK + + ++LL+G++ GLYQ S A
Sbjct: 401 KNLLSVSKFAQDNNVIFEFHPYHCFVKYQDSKQVLLEGTVGADGLYQFKPFKFLTNSGAA 460
Query: 1267 LHSSTAQFSNSANIVV--SDVN---------------LWQKRLGHCSSAVLNNVLKQIK- 1392
+S ++ S+S+ V + VN +W RLGH ++ + N+L
Sbjct: 461 SNSDSSSMSSSSQFSVFNNPVNCNNTVSVMQNGNVFQMWHLRLGHAHTSAVKNILNLCNI 520
Query: 1393 GFNSSSQLEFCHACQLGKLKSVSFPPVESKTTAPFQLVYSDVWVLLPFL 1539
F++ + C C +GK + P + T PF++++ D+W PF+
Sbjct: 521 PFSNKTATLPCTFCCMGKSHRLHSPLSNTVYTKPFEVIHCDLWGPAPFV 569
Score = 45.8 bits (107), Expect(2) = 5e-18
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = +2
Query: 875 NESAWFMDSGATAHVTSDLKNLSLQSAYTGSDKLTIGNG 991
+ AW+ DSGA+ H+T + NLS S YTG D++ +GNG
Sbjct: 327 SNGAWYPDSGASHHLTYNPNNLSYSSPYTGQDQVVMGNG 365
Score = 71.6 bits (174), Expect = 8e-09
Identities = 41/190 (21%), Positives = 97/190 (51%), Gaps = 27/190 (14%)
Frame = +1
Query: 4 WRLQILSTVDAHGFEGFLFG-SVPIPPKLVD----GEVNLEYTLWIRRDQLMFSWIIASI 168
W Q+ + AH F+ +P+ ++ G + EY W+ +DQ +F+W+++++
Sbjct: 13 WSQQVNGVITAHNLHRFVVNPQIPLQFASIEDCALGINSDEYQQWLIKDQTLFTWLLSTL 72
Query: 169 SESMLGYITRCTTSSDLWSVLETAFRSQPRARVQHLKAQLHSSKKGDLSISDYILHMQGI 348
S+ +L + C + ++W + F S ++R + L+++L ++KK S+++Y+L ++ I
Sbjct: 73 SDGVLPRVLSCRHAHEVWDKIHKYFNSVLKSRARQLRSELKNTKKLSRSVNEYLLRIKSI 132
Query: 349 TDNIHAAG-------------------YESIVVNLTARAEELTLQDVQ---YAQQTHEMR 462
+++ A G + S V+ + +R + T++DV+ Q+ +
Sbjct: 133 VNSLVAVGDMVSEQEQVDSILEGLPEEFNSFVMMVYSRFDTPTVEDVEALLLLQEAQFEK 192
Query: 463 LQQQISTESV 492
+Q++++ SV
Sbjct: 193 FKQELTSPSV 202
>emb|CCH50966.1| T4.5 [Malus x robusta]
Length = 1670
Score = 356 bits (913), Expect(3) = e-121
Identities = 188/385 (48%), Positives = 247/385 (64%), Gaps = 1/385 (0%)
Frame = +2
Query: 2522 PKSVTDALSNSQWKAAMDAEFSALVKNHTWDLIPFHSHMKI-DHKWVFRVKYNPDGSIDQ 2698
P + A +S W AM EF AL TW+L+P HS I KWVF+VK+ PDG+I++
Sbjct: 1149 PSTFLQASKSSHWMEAMQFEFQALQSTGTWELVPNHSTYNIVGCKWVFKVKHKPDGTIER 1208
Query: 2699 FKAHLVAKGFQQLPGVDYFDTFSPVVKPITIRLVFSLAVFRGWSIRHIDVNNAFLYGDLK 2878
+KA LVAKGF Q G+D+ +TFSPV KP TIR++ S+AV W I +DV+NAFL+G LK
Sbjct: 1209 YKARLVAKGFHQQEGLDFSETFSPVAKPTTIRILLSIAVSYYWFIHQLDVSNAFLHGHLK 1268
Query: 2879 EDVYMSQPTGYVDNSKPTHVCKLVKSIYGLKQAPKSWNDKLKFHLLSLGFLVSQSDSCLF 3058
EDVYM QP G+VD SKP HVCKL KS+YGLKQAP++W + +LSLGF S SD+ LF
Sbjct: 1269 EDVYMVQPPGFVDPSKPHHVCKLRKSLYGLKQAPRAWYEAFYTAILSLGFSSSHSDTSLF 1328
Query: 3059 YQRIQSHXXXXXXXXXXXXXMGDDSKLVTHVIDGIQISFSLKHLARVSYFLGIQVNYIGA 3238
+R + G +I +Q F +K L ++YFLGI+V+
Sbjct: 1329 IKR-DTSITFILVYVDDIIITGSSVTECQSIISQLQTMFPVKDLGDINYFLGIEVHKSDQ 1387
Query: 3239 GILLN*SKYILDLLKKTNMEDYNPCATPPCINQKLYLQDSALLENPTLYRITVGALQYLT 3418
G+LL+ +KY LDLLKKT+M PCATP ++ LL +PT YR TVGALQYLT
Sbjct: 1388 GLLLHQAKYALDLLKKTDMLGAKPCATP--VSTSKLDHSGTLLSDPTSYRSTVGALQYLT 1445
Query: 3419 LTRPDISFIVNKLSQFLHAPTLSHWGACKRVLRYLRDSMTQGLLFQSSPRMNLESFADAD 3598
TRPD++F VN++ Q++H+P H A KR+LRYL+ ++ GL F + L +++DAD
Sbjct: 1446 WTRPDLAFAVNQVCQYMHSPQTIHLQAVKRILRYLKGTVDLGLWFTKGSQC-LTAWSDAD 1504
Query: 3599 WASSMDDRRSTSGYCAFLGPNIIAW 3673
WA DRRSTSGYC FLG N+I+W
Sbjct: 1505 WAGCPVDRRSTSGYCVFLGSNLISW 1529
Score = 94.0 bits (232), Expect(3) = e-121
Identities = 48/93 (51%), Positives = 60/93 (64%)
Frame = +1
Query: 3646 ISWAQYHCVEFQKKQSVVARSSTETEYHSLASVTTELIWIKSFFAELGLAILPRSVI*CD 3825
ISW+ KKQ+ VARSSTE EY SLA+ E+ W+ ++ +L VI CD
Sbjct: 1527 ISWSA-------KKQATVARSSTEAEYRSLANTAAEITWVCKILHDISFPLLKTPVIYCD 1579
Query: 3826 NISAISLASNPGFHARTKHIEVDVHFIREK*LL 3924
N S I+LA NP FHARTKH+E+D H+IREK LL
Sbjct: 1580 NKSVIALAFNPVFHARTKHVEIDYHYIREKVLL 1612
Score = 39.3 bits (90), Expect(3) = e-121
Identities = 20/52 (38%), Positives = 32/52 (61%)
Frame = +3
Query: 3912 KIAAKDVEVRFLPSEDQVADVLTKPIVAAQFHNLCSKLSLQSP*FG*GVCIR 4067
K+ + V+ + S Q+AD+ TKP+ A +F L SKLS++SP F C++
Sbjct: 1609 KVLLGHIGVQHVASLLQIADIFTKPLAADRFAALTSKLSVRSPSFSLRGCVK 1660
Score = 130 bits (326), Expect(4) = 3e-59
Identities = 59/126 (46%), Positives = 91/126 (72%), Gaps = 1/126 (0%)
Frame = +2
Query: 1772 YTHQQNGKPKRKHQHIVNVGLSFLAHSNIPYCFWWDAFVSAIFTINRRPTSTLNHLSPFQ 1951
+T +QNG +RKH+H+V +G + L+ S++P FW +AF + ++ INR P + + +SP++
Sbjct: 885 HTSEQNGCAERKHRHVVEMGRTLLSQSDLPTQFWVEAFQTVVYLINRLPPQS-SVISPWE 943
Query: 1952 KLFGSIPDYNFLKSFGCACYPYLRLYNQSKLQFRSTKCVFLGYSPAHKGYRCLSP-SGKI 2128
LF + P Y+ LK+FGCACYP+L+ Y++ KL F+S +CVFLGYS H GYRC P S ++
Sbjct: 944 LLFHASPKYHTLKAFGCACYPWLQPYSRDKLDFKSKQCVFLGYSLNHSGYRCWDPISNRL 1003
Query: 2129 YVARTV 2146
Y++R V
Sbjct: 1004 YISRHV 1009
Score = 78.2 bits (191), Expect(4) = 3e-59
Identities = 46/145 (31%), Positives = 76/145 (52%), Gaps = 2/145 (1%)
Frame = +1
Query: 1093 NLLSIPQFTKDNRVFIEFHHDSCFVKDKLTHRILLKGSLQGGLYQLDLTPLQPQSSANLH 1272
NLLS+ +F DN ++ F +VKD T ++L +G +GGLY +++N
Sbjct: 659 NLLSVYKFVYDNWCYLTFDPFGFYVKDLSTGKMLFQGPSEGGLYPF------YWNASNGV 712
Query: 1273 SSTAQFSNSANIVVSDVNLWQKRLGHCSSAVLNNVL--KQIKGFNSSSQLEFCHACQLGK 1446
S A + I +D++ W +RLGH S L++V+ + + + C ACQLGK
Sbjct: 713 SGIAISPTALMIAKADIHTWHRRLGHPSGGTLHSVVHKNHLPVIGYVNNMSVCTACQLGK 772
Query: 1447 LKSVSFPPVESKTTAPFQLVYSDVW 1521
+SF + ++ P QL+++DVW
Sbjct: 773 SYRLSFSTLPCTSSRPLQLLHTDVW 797
Score = 53.9 bits (128), Expect(4) = 3e-59
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Frame = +3
Query: 1521 GPASISS-NGYKYYIHFVDDFTNYTWICPLNTKGEALTALKHFNSVVKTQVNSHIHTFQC 1697
GP+ SS GY++Y+ VDDFT Y+W+ PL+ K + + LK F ++T ++ + + +
Sbjct: 798 GPSPTSSCTGYRFYLIIVDDFTKYSWLYPLHFKSDVFSTLKTFILKLQTLLDLQVQSIRS 857
Query: 1698 DWGG*F 1715
D GG F
Sbjct: 858 DSGGEF 863
Score = 40.0 bits (92), Expect(4) = 3e-59
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +2
Query: 827 QYANSAS--SVSEYGYPGNESAWFMDSGATAHVTSDLKNLSLQSAYTGSDKLTIGNG 991
Q+A S S ++S + S W DSGA+ HVT D L+ Y+G+D+L +G+G
Sbjct: 569 QFAQSQSPTAMSAMTSSASPSYWLTDSGASHHVTPDPSALNSAIPYSGNDQLFVGDG 625
Score = 68.9 bits (167), Expect = 6e-08
Identities = 49/198 (24%), Positives = 86/198 (43%), Gaps = 24/198 (12%)
Frame = +1
Query: 4 WRLQILSTVDAHGFEGFLFGSVPIPPKLVDGEV-----NLEYTLWIRRDQLMFSWIIASI 168
WR + + G + G PP V N + W RDQ++ WI +++
Sbjct: 286 WRSLFIPVLKRFKLIGLVNGEDLCPPPFVRDPSGTCVPNASFETWCERDQILMIWINSTL 345
Query: 169 SESMLGYITRCTTSSDLWSVLETAFRSQPRARVQHLKAQLHSSKKGDLSISDYILHMQGI 348
S+ +L S LW LE F R V L++++ + KGD S++D++ ++ I
Sbjct: 346 SKDLLPLTIGMEDSRSLWQSLERRFSGASRTHVHSLRSKIQTIHKGDSSMTDFLNSIKEI 405
Query: 349 TDNIHAAG-------------------YESIVVNLTARAEELTLQDVQYAQQTHEMRLQQ 471
++ + AAG YES V ++ R E +T ++ + E+ LQ+
Sbjct: 406 SNKLAAAGEPLSESDLVAYILSGLPDEYESFVDSIETRNESVTADELHGLLLSKEISLQK 465
Query: 472 QISTESVHLHAPPAAHFA 525
+ + S +AP A+ A
Sbjct: 466 RKTRASSSSNAPFHAYAA 483
>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1447
Score = 374 bits (959), Expect(2) = e-121
Identities = 192/390 (49%), Positives = 253/390 (64%), Gaps = 3/390 (0%)
Frame = +2
Query: 2513 TCEPKSVTDALSNSQWKAAMDAEFSALVKNHTWDLIP-FHSHMKIDHKWVFRVKYNPDGS 2689
T EPK++TDAL N+ WK AMD E+ AL+ N TW L+P ID KWV+++K DGS
Sbjct: 936 TGEPKNLTDALQNTNWKKAMDIEYEALMNNKTWHLVPPKQGRNVIDCKWVYKIKRKQDGS 995
Query: 2690 IDQFKAHLVAKGFQQLPGVDYFDTFSPVVKPITIRLVFSLAVFRGWSIRHIDVNNAFLYG 2869
+D++KA LVAKGF+Q G+DY DTFSPVVK TIR+V S+AV RGW +R +DV NAFL+G
Sbjct: 996 LDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIVLSIAVSRGWCMRQLDVQNAFLHG 1055
Query: 2870 DLKEDVYMSQPTGYVDNSKPTHVCKLVKSIYGLKQAPKSWNDKLKFHLLSLGFLVSQSDS 3049
L+E+VYM QP GY D S P +VCKL K++YGLKQAP++W +L L LGF S+ D+
Sbjct: 1056 FLEEEVYMKQPPGYEDESFPGYVCKLDKALYGLKQAPRAWYSRLSKKLYDLGFQGSKGDT 1115
Query: 3050 CLFYQRIQSHXXXXXXXXXXXXXMGDDSKLVTHVIDGIQISFSLKHLARVSYFLGIQVNY 3229
LF+ + V+ ++ ++ F+LK L + YFLGI+VN
Sbjct: 1116 SLFFYNKGGLIIFVLIYVDDIIVTSSRQEAVSALLQDLKKEFALKDLGDLHYFLGIEVNK 1175
Query: 3230 IGAGILLN*SKYILDLLKKTNMEDYNPCATPPCINQKLYLQDSALLE--NPTLYRITVGA 3403
+ I+L KY DLL++ NM D P +TP ++KL + LL + T YR VGA
Sbjct: 1176 VTDEIILTQDKYACDLLRRVNMFDCKPVSTPLSTSEKLSAHEGDLLGPLDATNYRSVVGA 1235
Query: 3404 LQYLTLTRPDISFIVNKLSQFLHAPTLSHWGACKRVLRYLRDSMTQGLLFQSSPRMNLES 3583
LQYLTLTRPDI+F VNK+ QFLHAPT HW A KR+LRYL+ GL S M + +
Sbjct: 1236 LQYLTLTRPDIAFPVNKVCQFLHAPTTVHWAAVKRILRYLKQCTKLGLKLCKSKSMLVSA 1295
Query: 3584 FADADWASSMDDRRSTSGYCAFLGPNIIAW 3673
++DADWA S+DDRRST G+ FLG N+++W
Sbjct: 1296 YSDADWAGSLDDRRSTGGFAVFLGDNLVSW 1325
Score = 93.2 bits (230), Expect(2) = e-121
Identities = 44/88 (50%), Positives = 63/88 (71%)
Frame = +1
Query: 3682 KKQSVVARSSTETEYHSLASVTTELIWIKSFFAELGLAILPRSVI*CDNISAISLASNPG 3861
+KQ+ V+RSSTE+EY +LA+ T E++W+++ EL + P + + CDN+ A L+SNP
Sbjct: 1328 RKQATVSRSSTESEYKALANATAEIMWVQTLLTELQVQSPPMAKLWCDNLGAKYLSSNPV 1387
Query: 3862 FHARTKHIEVDVHFIREK*LLKTLKFVF 3945
FHARTKHIEVD HF+RE+ K L+ F
Sbjct: 1388 FHARTKHIEVDYHFVRERVSQKLLEIDF 1415
Score = 162 bits (410), Expect(5) = 3e-71
Identities = 72/127 (56%), Positives = 96/127 (75%), Gaps = 1/127 (0%)
Frame = +2
Query: 1769 PYTHQQNGKPKRKHQHIVNVGLSFLAHSNIPYCFWWDAFVSAIFTINRRPTSTLNHLSPF 1948
P+THQQNG +RKH+HIV VGL+ LA+S++P FW +AF +A++ INR PT L L+P
Sbjct: 607 PHTHQQNGSAERKHRHIVEVGLTLLAYSSMPLKFWDEAFQAAVYLINRTPTKLLQFLTPL 666
Query: 1949 QKLFGSIPDYNFLKSFGCACYPYLRLYNQSKLQFRSTKCVFLGYSPAHKGYRCLSPS-GK 2125
+ LF PDY+ L+ FGCAC+P+LR YN KLQFRS +C FLGYS HKG++CL PS G+
Sbjct: 667 EHLFNQTPDYSSLRVFGCACWPHLRPYNTHKLQFRSKQCTFLGYSTLHKGFKCLDPSTGR 726
Query: 2126 IYVARTV 2146
+Y++R V
Sbjct: 727 VYISRDV 733
Score = 69.7 bits (169), Expect(5) = 3e-71
Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 2/146 (1%)
Frame = +1
Query: 1090 QNLLSIPQFTKDNRVFIEFHHDSCFVKDKLTHRILLKGSLQGGLYQLDLTPLQPQSSANL 1269
+NL+S + DN ++E + +KD T ++L +G +G LY L P SS
Sbjct: 386 KNLVSANRLVSDNSAYMELYSKYFNLKDLATKKLLFRGPCRGRLYAL------PSSSP-- 437
Query: 1270 HSSTAQFSNSANIVVSDVNLWQKRLGHCSSAVLNNVLKQ--IKGFNSSSQLEFCHACQLG 1443
H + + W RLGH +S ++ V+ + + S++ C ACQ G
Sbjct: 438 HERPRPLKEAFGAIKPSFERWHSRLGHPASPIVEKVISKNNLPCLAESNKQSVCDACQQG 497
Query: 1444 KLKSVSFPPVESKTTAPFQLVYSDVW 1521
K + + S ++ P +L+YSDVW
Sbjct: 498 KSHQLPYSRSSSMSSHPLELIYSDVW 523
Score = 55.8 bits (133), Expect(5) = 3e-71
Identities = 23/77 (29%), Positives = 40/77 (51%)
Frame = +3
Query: 1521 GPASISSNGYKYYIHFVDDFTNYTWICPLNTKGEALTALKHFNSVVKTQVNSHIHTFQCD 1700
GPA S G +YY+ F+ D++ +TW+ + K E + F ++V+ N I Q D
Sbjct: 524 GPALTSVGGKQYYVSFIGDYSKFTWLYLIKHKSEVIQKFHEFQALVERLFNRKIIAMQSD 583
Query: 1701 WGG*FRPIAYFLSSLKV 1751
WGG + + F + + +
Sbjct: 584 WGGEYEKLHSFFTKIGI 600
Score = 40.8 bits (94), Expect(5) = 3e-71
Identities = 22/60 (36%), Positives = 34/60 (56%)
Frame = +2
Query: 812 FPSPPQYANSASSVSEYGYPGNESAWFMDSGATAHVTSDLKNLSLQSAYTGSDKLTIGNG 991
F +YA SA+S YG N W++D+ AT HVT +L L+++ Y G D++ +G
Sbjct: 300 FVPDEKYAGSATS---YGIDTN---WYVDTSATDHVTGELDKLTVRDRYKGQDQVHTASG 353
Score = 34.3 bits (77), Expect(5) = 3e-71
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 627 NRPSCQICGKNNHIASKCFKRFDVNF 704
NRP CQ+C K H C+ R+D +F
Sbjct: 275 NRPKCQLCYKRGHTVINCWYRYDEDF 300
Score = 74.3 bits (181), Expect = 1e-09
Identities = 39/134 (29%), Positives = 72/134 (53%), Gaps = 11/134 (8%)
Frame = +1
Query: 4 WRLQILSTVDAHGFEGFLFGSVPIPPKLV--------DGEV---NLEYTLWIRRDQLMFS 150
W+ Q+++ V EG L G+ P L+ + EV N E+ W+ DQ +
Sbjct: 30 WKAQVMAAVRGARLEGHLTGATKTPNALITTTAGDKGEKEVTVRNPEFDDWVATDQQVLG 89
Query: 151 WIIASISESMLGYITRCTTSSDLWSVLETAFRSQPRARVQHLKAQLHSSKKGDLSISDYI 330
+++++++ +L + C T++ W +LE + S RAR + + L ++KKG LSI++Y+
Sbjct: 90 FLLSTLARDVLAQVATCGTAAAAWQMLEEMYSSVTRARFINTRIALSNTKKGTLSINEYV 149
Query: 331 LHMQGITDNIHAAG 372
M+ + D + AAG
Sbjct: 150 SKMKALADEMTAAG 163
>gb|KYP64199.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1408
Score = 368 bits (944), Expect(4) = e-120
Identities = 195/390 (50%), Positives = 256/390 (65%), Gaps = 5/390 (1%)
Frame = +2
Query: 2519 EPKSVTDALSNSQWKAAMDAEFSALVKNHTWDLIPFHSHMK-IDHKWVFRVKYNPDGSID 2695
EPK+V AL++ W +AM AE +AL NHTW L+ K I KWVFR+K NPDGSI+
Sbjct: 892 EPKTVKSALTDPHWLSAMQAELTALHDNHTWTLVDLPPGRKSIGCKWVFRLKENPDGSIN 951
Query: 2696 QFKAHLVAKGFQQLPGVDYFDTFSPVVKPITIRLVFSLAVFRGWSIRHIDVNNAFLYGDL 2875
++KA LVAKGF Q PGVD+ +TFSPVVKP+TIR+V SLAV W +R +D+NNAFL G L
Sbjct: 952 KYKARLVAKGFHQQPGVDFSETFSPVVKPVTIRIVLSLAVTFQWPLRQLDINNAFLNGML 1011
Query: 2876 KEDVYMSQPTGYVDNSKPTHVCKLVKSIYGLKQAPKSWNDKLKFHLLSLGFLVSQSDSCL 3055
+ED+YMSQP G+++ + VCKL KS+YGLKQAP++W D+L LL LGF S+ D L
Sbjct: 1012 EEDIYMSQPPGFIEPNSKHLVCKLHKSLYGLKQAPRAWFDRLTSVLLKLGFHKSKCDPSL 1071
Query: 3056 FYQRIQSHXXXXXXXXXXXXXMGDDSKLVTHVIDGIQISFSLKHLARVSYFLGIQVNYIG 3235
F S G+ S L+ I+ + +FSLK L + YFLGI+V +
Sbjct: 1072 FIFSTPSAIVYMLIYVDDIILTGNSSSLMQQFINHLHATFSLKDLGTLDYFLGIEVKSLS 1131
Query: 3236 AG-ILLN*SKYILDLLKKTNMEDYNPCATPPCINQKLYLQDSALLENPTLYRITVGALQY 3412
G +LL+ KYI DLL K MED +TP Q+L + L +PTLYR VGALQY
Sbjct: 1132 NGRLLLSQHKYISDLLTKVKMEDSKGISTPMIGGQQL-AKTGTLFNDPTLYRSVVGALQY 1190
Query: 3413 LTLTRPDISFIVNKLSQFLHAPTLSHWGACKRVLRYLRDSMTQGLLF---QSSPRMNLES 3583
T+TRP+I+F VNK+SQF+ +P HW KR+LRYL+ ++ GL+F +SS NL +
Sbjct: 1191 ATITRPEIAFSVNKVSQFMCSPMEEHWKVVKRILRYLKGTLKHGLVFTPARSSSSFNLTA 1250
Query: 3584 FADADWASSMDDRRSTSGYCAFLGPNIIAW 3673
F DADWA+ +DRRSTS C +LGPN+++W
Sbjct: 1251 FTDADWAADPNDRRSTSAACIYLGPNLVSW 1280
Score = 84.0 bits (206), Expect(4) = e-120
Identities = 41/86 (47%), Positives = 59/86 (68%)
Frame = +1
Query: 3676 FQKKQSVVARSSTETEYHSLASVTTELIWIKSFFAELGLAILPRSVI*CDNISAISLASN 3855
+ KKQ +VARSSTE EY +LA TE++WI+S EL + V+ CDN S ++L+ N
Sbjct: 1281 WSKKQLLVARSSTEAEYRALAQAVTEVLWIQSLLQELKIRFNTPMVL-CDNQSTVALSHN 1339
Query: 3856 PGFHARTKHIEVDVHFIREK*LLKTL 3933
P H+R+KH+E+D+ F+REK + K L
Sbjct: 1340 PVLHSRSKHMELDIFFVREKVISKAL 1365
Score = 35.0 bits (79), Expect(4) = e-120
Identities = 17/43 (39%), Positives = 28/43 (65%)
Frame = +3
Query: 3912 KIAAKDVEVRFLPSEDQVADVLTKPIVAAQFHNLCSKLSLQSP 4040
K+ +K + V +PS+ Q AD+LTK + +F +L SKL++ P
Sbjct: 1359 KVISKALVVSHIPSQHQYADLLTKALSPKRFLSLRSKLNVADP 1401
Score = 21.6 bits (44), Expect(4) = e-120
Identities = 10/18 (55%), Positives = 14/18 (77%), Gaps = 2/18 (11%)
Frame = +3
Query: 2454 MLTRSKLGIFKPK--PTM 2501
M+TRSK GI +P+ PT+
Sbjct: 869 MITRSKNGILQPRLNPTL 886
Score = 160 bits (404), Expect(2) = 6e-44
Identities = 71/126 (56%), Positives = 94/126 (74%)
Frame = +2
Query: 1769 PYTHQQNGKPKRKHQHIVNVGLSFLAHSNIPYCFWWDAFVSAIFTINRRPTSTLNHLSPF 1948
PYTH QNG +R+H+HIV +GL+ L HS +P FW AF++A + INR P+S++ SP+
Sbjct: 652 PYTHHQNGTVERRHRHIVELGLAMLHHSTLPLNFWDHAFLTATYLINRLPSSSVGFQSPY 711
Query: 1949 QKLFGSIPDYNFLKSFGCACYPYLRLYNQSKLQFRSTKCVFLGYSPAHKGYRCLSPSGKI 2128
+ + PDY FLK FGC+C+P LR YNQ KLQ RS +CVFLGYSP HKGY+CLS SG+I
Sbjct: 712 KLIHHKDPDYTFLKVFGCSCFPLLRPYNQHKLQPRSEECVFLGYSPLHKGYKCLSKSGRI 771
Query: 2129 YVARTV 2146
Y+++ V
Sbjct: 772 YISKDV 777
Score = 49.3 bits (116), Expect(2) = 6e-44
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = +3
Query: 1491 PFSTCLFGCMGPASISSN-GYKYYIHFVDDFTNYTWICPLNTKGEALTALKHFNSVVKTQ 1667
P GPAS+ S+ GY Y++ VD T Y WI L K + + ++F ++ + Q
Sbjct: 558 PLELVFLDVWGPASLESSCGYLYFLTCVDACTKYVWIYLLRRKSDVFSNFQNFKALAEKQ 617
Query: 1668 VNSHIHTFQCDWGG*FRPIAYF 1733
+ + Q D GG FR + F
Sbjct: 618 FQLPLKSVQTDGGGEFRALISF 639
Score = 63.5 bits (153), Expect(2) = 9e-12
Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 14/158 (8%)
Frame = +1
Query: 1090 QNLLSIPQFTKDNRVFIEFHHDSCFVKDKLTHRILLKGSL-QGGLYQLDLTPLQPQSSAN 1266
+NL+S+ +F KDN V+ FH SCFVK + + LL+G L + GLY L ++S+N
Sbjct: 411 KNLISVSKFAKDNNVYFVFHPHSCFVKSQDLNETLLEGHLGEDGLYHFH-PHLATKTSSN 469
Query: 1267 LH----------SSTAQFSNSANIVVSDV-NLWQKRLGHCSSAVLNNVLK--QIKGFNSS 1407
+ S N VV + W RLGH L L+ I+ +
Sbjct: 470 TNIEQNLIFSKPDPCIFLSEKCNSVVPNTYKQWHLRLGHPHHDSLTRALQTCNIRLPTVN 529
Query: 1408 SQLEFCHACQLGKLKSVSFPPVESKTTAPFQLVYSDVW 1521
+FC +C + K + P + + P +LV+ DVW
Sbjct: 530 KISDFCDSCCIAKSHRLPSHPSTTIYSKPLELVFLDVW 567
Score = 37.7 bits (86), Expect(2) = 9e-12
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +2
Query: 809 PFPSPPQYANSASSVSEYGYP--GNESAWFMDSGATAHVTSDLKNLSLQSAYTGSDKLTI 982
P PP+ +++S + P +AW DSGA+ H T D + L + +TG++ + +
Sbjct: 313 PANPPPRPRTASASAAPPAAPTLNTATAWIPDSGASHHATPDPQYLLQSAQFTGAEHIAM 372
Query: 983 GNG 991
NG
Sbjct: 373 ANG 375
Score = 80.9 bits (198), Expect = 1e-11
Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 6/129 (4%)
Frame = +1
Query: 4 WRLQILSTVDAHGFEGFLFGSVPIPPKLVDGE------VNLEYTLWIRRDQLMFSWIIAS 165
W+ Q+ + + AH E F+ IP K + E VN EYT W R+D L+ SW++A+
Sbjct: 3 WQQQVTAVIRAHDLERFVVNP-KIPLKFLTPEDRDANLVNPEYTAWDRKDSLLVSWLLAT 61
Query: 166 ISESMLGYITRCTTSSDLWSVLETAFRSQPRARVQHLKAQLHSSKKGDLSISDYILHMQG 345
+SES+ + C S +W ++ F+S + + L+ +L + KKG S SDY+L +
Sbjct: 62 LSESIQARVVSCRHSYQIWDLVFQHFQSLTKIKATQLRLELRTIKKGTRSCSDYLLRIST 121
Query: 346 ITDNIHAAG 372
I + + + G
Sbjct: 122 IVETLASIG 130
>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea mays]
Length = 1313
Score = 369 bits (946), Expect(3) = e-120
Identities = 188/396 (47%), Positives = 256/396 (64%), Gaps = 3/396 (0%)
Frame = +2
Query: 2495 YNVTNTTCEPKSVTDALSNSQWKAAMDAEFSALVKNHTWDLIPFHSHMK-IDHKWVFRVK 2671
Y ++ EP + +AL + WK AMD E+SAL+KN TW L+P I KWV+++K
Sbjct: 796 YGCFTSSGEPYDLNEALGDVNWKDAMDIEYSALMKNKTWHLVPPKKGRNVIGCKWVYKIK 855
Query: 2672 YNPDGSIDQFKAHLVAKGFQQLPGVDYFDTFSPVVKPITIRLVFSLAVFRGWSIRHIDVN 2851
DGS+D++KA LVAKG++Q G+DY DTFSPVVK TIR++ S+AV RGWS+ +DV
Sbjct: 856 RKADGSLDRYKARLVAKGYKQQYGIDYDDTFSPVVKHATIRIILSIAVSRGWSLCQLDVQ 915
Query: 2852 NAFLYGDLKEDVYMSQPTGYVDNSKPTHVCKLVKSIYGLKQAPKSWNDKLKFHLLSLGFL 3031
NAFL+G L+E+VYM QP GY D++K +VCKL K++YGLKQAP++W +L LLSLGF
Sbjct: 916 NAFLHGVLEEEVYMQQPPGYEDSTKLNYVCKLDKALYGLKQAPRAWYSRLSNKLLSLGFQ 975
Query: 3032 VSQSDSCLFYQRIQSHXXXXXXXXXXXXXMGDDSKLVTHVIDGIQISFSLKHLARVSYFL 3211
S++D+ LF+ S K ++ + F+LK L ++YFL
Sbjct: 976 ASKADTSLFFYNKGSVTIFVLVYVDDIIVASSTHKATEALLSDLNKEFALKDLGDLNYFL 1035
Query: 3212 GIQVNYIGAGILLN*SKYILDLLKKTNMEDYNPCATPPCINQKLYLQDSALL--ENPTLY 3385
GI+VN + GI+L KY DLLKK M D P +TP ++KL + + + L ++ T Y
Sbjct: 1036 GIEVNKVRDGIILTQDKYASDLLKKVGMSDCKPISTPLSTSEKLSIHEGSPLGEKDITQY 1095
Query: 3386 RITVGALQYLTLTRPDISFIVNKLSQFLHAPTLSHWGACKRVLRYLRDSMTQGLLFQSSP 3565
R VGALQYLTLTRPDI+F VNK+ QFLHAPT HW A KR+LRY++ GL S
Sbjct: 1096 RSIVGALQYLTLTRPDIAFSVNKVCQFLHAPTTLHWAAVKRILRYIKQCTNLGLHIHRSD 1155
Query: 3566 RMNLESFADADWASSMDDRRSTSGYCAFLGPNIIAW 3673
+ +F+DADWA S+DDR+ST G+ FLG N+++W
Sbjct: 1156 STLVSAFSDADWAGSVDDRKSTGGFAVFLGSNLVSW 1191
Score = 86.3 bits (212), Expect(3) = e-120
Identities = 41/84 (48%), Positives = 58/84 (69%)
Frame = +1
Query: 3682 KKQSVVARSSTETEYHSLASVTTELIWIKSFFAELGLAILPRSVI*CDNISAISLASNPG 3861
+KQ V+RSSTE+EY +LA+ T ELIW++ E+ + + + CDN+ A L++NP
Sbjct: 1194 RKQPTVSRSSTESEYKALANATAELIWVQILLTEISIKSPRAAKLWCDNLGAKYLSANPI 1253
Query: 3862 FHARTKHIEVDVHFIREK*LLKTL 3933
FHARTKHIEVD HF+R++ K L
Sbjct: 1254 FHARTKHIEVDYHFVRDRVAKKLL 1277
Score = 32.0 bits (71), Expect(3) = e-120
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 3912 KIAAKDVEVRFLPSEDQVADVLTKPIVAAQFHNLCSKLSL 4031
++A K +++ ++P+ DQVAD TKP+ N L+L
Sbjct: 1271 RVAKKLLDIEYVPTGDQVADGFTKPLSVRLLENFKVNLNL 1310
Score = 159 bits (401), Expect = 1e-35
Identities = 73/127 (57%), Positives = 95/127 (74%), Gaps = 1/127 (0%)
Frame = +2
Query: 1769 PYTHQQNGKPKRKHQHIVNVGLSFLAHSNIPYCFWWDAFVSAIFTINRRPTSTLNHLSPF 1948
P+ HQQNG +RKH+HIV VGLS LAH+++P FW +AF++A + INR PT LN +PF
Sbjct: 454 PHAHQQNGSAERKHRHIVEVGLSLLAHASMPLKFWDEAFLAAAYLINRTPTKILNLDTPF 513
Query: 1949 QKLFGSIPDYNFLKSFGCACYPYLRLYNQSKLQFRSTKCVFLGYSPAHKGYRCLSPS-GK 2125
++LF PDY+ L+ FGC C+P LR YN KLQFRS +CVFLGYS HKG++CL S G+
Sbjct: 514 ERLFHKQPDYSVLRIFGCVCWPNLRPYNSHKLQFRSKQCVFLGYSSLHKGFKCLDVSTGR 573
Query: 2126 IYVARTV 2146
+YV+R V
Sbjct: 574 VYVSRDV 580
Score = 70.5 bits (171), Expect = 2e-08
Identities = 38/127 (29%), Positives = 71/127 (55%), Gaps = 5/127 (3%)
Frame = +1
Query: 7 RLQILSTVDAHGFEGFLFGSVPIPPK-LVDGE----VNLEYTLWIRRDQLMFSWIIASIS 171
+ Q+ + + EG+L G+ +P + VD + N + W +DQ + S++++SIS
Sbjct: 5 KAQVRAAMRGARLEGYLTGATKMPDEETVDNKGKKSPNPAFEEWEAKDQQILSYLLSSIS 64
Query: 172 ESMLGYITRCTTSSDLWSVLETAFRSQPRARVQHLKAQLHSSKKGDLSISDYILHMQGIT 351
+ +T T+++ W +E F SQ RAR +L+ L ++KKG +++++Y M+G
Sbjct: 65 REVQIQVTSAKTAAEAWHSIEAMFASQTRARAVNLRLALSTTKKGSMTVAEYYTKMKGYG 124
Query: 352 DNIHAAG 372
D + AAG
Sbjct: 125 DEMAAAG 131
>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
Group]
Length = 1399
Score = 375 bits (964), Expect(2) = e-120
Identities = 187/386 (48%), Positives = 258/386 (66%), Gaps = 3/386 (0%)
Frame = +2
Query: 2525 KSVTDALSNSQWKAAMDAEFSALVKNHTWDLIPFHSHMK-IDHKWVFRVKYNPDGSIDQF 2701
KS+ +A++N WK AMDAE+ AL++N TW L+P ID KWV++VK DGS+D++
Sbjct: 886 KSLEEAVNNKHWKEAMDAEYMALIENKTWHLVPPQKGRNVIDCKWVYKVKRKADGSLDRY 945
Query: 2702 KAHLVAKGFQQLPGVDYFDTFSPVVKPITIRLVFSLAVFRGWSIRHIDVNNAFLYGDLKE 2881
KA LVAKGF+Q G+DY DTFSPVVK TIR+V SLAV RGWS+R +DV NAFL+G L+E
Sbjct: 946 KARLVAKGFKQRYGIDYEDTFSPVVKAATIRIVLSLAVSRGWSLRQLDVKNAFLHGVLEE 1005
Query: 2882 DVYMSQPTGYVDNSKPTHVCKLVKSIYGLKQAPKSWNDKLKFHLLSLGFLVSQSDSCLFY 3061
+VYM QP GY S P +VCKL K++YGLKQAP++W +L L LGF+ S++D+ LF+
Sbjct: 1006 EVYMKQPPGYEKKSMPNYVCKLDKALYGLKQAPRAWYSRLSTKLSELGFVPSKADTSLFF 1065
Query: 3062 QRIQSHXXXXXXXXXXXXXMGDDSKLVTHVIDGIQISFSLKHLARVSYFLGIQVNYIGAG 3241
+ + ++ + F+LK L + YFLGI+V+ + G
Sbjct: 1066 YKKGQVSIFLLIYVDDIIVASSVPDATSTLLQELSKDFALKDLGDLHYFLGIEVHKVKDG 1125
Query: 3242 ILLN*SKYILDLLKKTNMEDYNPCATPPCINQKLYLQDSALL--ENPTLYRITVGALQYL 3415
++L+ KY DLL++ M + P +TP ++KL + + LL ++ T YR VGALQYL
Sbjct: 1126 LMLSQEKYASDLLRRVGMYECKPVSTPLSTSEKLSVNEGTLLGPQDSTQYRSVVGALQYL 1185
Query: 3416 TLTRPDISFIVNKLSQFLHAPTLSHWGACKRVLRYLRDSMTQGLLFQSSPRMNLESFADA 3595
TLTRPDISF +NK+ QFLHAPT +HW A KR+LRY++ ++ GL F +P + + F+DA
Sbjct: 1186 TLTRPDISFSINKVCQFLHAPTTTHWAAVKRILRYVKYTVDTGLKFCRNPSLLVSGFSDA 1245
Query: 3596 DWASSMDDRRSTSGYCAFLGPNIIAW 3673
DWA S DDRRST G+ FLGPN+++W
Sbjct: 1246 DWAGSPDDRRSTGGFAVFLGPNLVSW 1271
Score = 89.0 bits (219), Expect(2) = e-120
Identities = 42/92 (45%), Positives = 62/92 (67%)
Frame = +1
Query: 3682 KKQSVVARSSTETEYHSLASVTTELIWIKSFFAELGLAILPRSVI*CDNISAISLASNPG 3861
+KQ+ V+RSS E EY +LA+ T E++W+++ ELG+ + + CDN+ A L++NP
Sbjct: 1274 RKQATVSRSSIEAEYKALANATAEIMWVQTLLQELGVESPRAAKLWCDNLGAKYLSANPI 1333
Query: 3862 FHARTKHIEVDVHFIREK*LLKTLKFVFCLPK 3957
FHARTKHIEVD HF+RE+ K L+ + K
Sbjct: 1334 FHARTKHIEVDFHFVRERVARKLLEIAYISTK 1365
Score = 142 bits (358), Expect(2) = 9e-42
Identities = 63/127 (49%), Positives = 90/127 (70%), Gaps = 1/127 (0%)
Frame = +2
Query: 1769 PYTHQQNGKPKRKHQHIVNVGLSFLAHSNIPYCFWWDAFVSAIFTINRRPTSTLNHLSPF 1948
PY HQQNG +RKH+H++ V L+ LAH+++P FW +A ++A + INR P+ +N P
Sbjct: 569 PYAHQQNGSAERKHRHLIEVALTLLAHASMPIKFWDEAVLAAAYLINRTPSKVINFACPL 628
Query: 1949 QKLFGSIPDYNFLKSFGCACYPYLRLYNQSKLQFRSTKCVFLGYSPAHKGYRCLS-PSGK 2125
++LF P+Y L+ FGCA +P LR YN+ KL FRS +CVFLGYS HKG++CL +G+
Sbjct: 629 EQLFKEKPNYTALRIFGCAVWPNLRPYNKHKLAFRSKRCVFLGYSNLHKGFKCLEIATGR 688
Query: 2126 IYVARTV 2146
+YV+R V
Sbjct: 689 VYVSRDV 695
Score = 59.7 bits (143), Expect(2) = 9e-42
Identities = 26/87 (29%), Positives = 43/87 (49%)
Frame = +3
Query: 1491 PFSTCLFGCMGPASISSNGYKYYIHFVDDFTNYTWICPLNTKGEALTALKHFNSVVKTQV 1670
P GPA IS G K+Y+ F+DD++ +TW+ L K E + F ++V+
Sbjct: 476 PLELIFSNVWGPAPISVGGKKFYVSFIDDYSKFTWVYLLKHKSEVFQKFQEFQTLVERFF 535
Query: 1671 NSHIHTFQCDWGG*FRPIAYFLSSLKV 1751
I Q DWGG ++ + F + + +
Sbjct: 536 GHKILAVQTDWGGEYQKLNTFFAKIGI 562
Score = 72.4 bits (176), Expect(2) = 3e-16
Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 12/165 (7%)
Frame = +1
Query: 1084 HYQNLLSIPQFTK----------DNRVFIEFHHDSCFVKDKLTHRILLKGSLQGGLYQLD 1233
H +N+L +PQ K DN F+E H + +KD+ T +LKG + LY L
Sbjct: 343 HLKNILHVPQAKKNLISAHRLAMDNFAFLEVHSNYFLIKDRATRNTILKGRCRRRLYSLP 402
Query: 1234 LTPLQPQSSANLHSSTAQFSNSANIVVSDVNLWQKRLGHCSSAVLNNVLKQ--IKGFNSS 1407
+P + +A +T FS W RLGH + ++ VL + + +
Sbjct: 403 TSPAKQVHAA----TTPSFSR-----------WHSRLGHPAVPIVTRVLSKNNLPCSTVA 447
Query: 1408 SQLEFCHACQLGKLKSVSFPPVESKTTAPFQLVYSDVWVLLPFLV 1542
++ C ACQ GK + +P S ++ P +L++S+VW P V
Sbjct: 448 NKDSICDACQKGKSHQLPYPKSSSVSSQPLELIFSNVWGPAPISV 492
Score = 44.3 bits (103), Expect(2) = 3e-16
Identities = 19/51 (37%), Positives = 32/51 (62%)
Frame = +2
Query: 839 SASSVSEYGYPGNESAWFMDSGATAHVTSDLKNLSLQSAYTGSDKLTIGNG 991
SA++ + YG N W++D+GAT H+T++L L ++ Y G DK+ +G
Sbjct: 275 SAAAAAAYGIDTN---WYLDTGATDHITNELDKLDVREKYKGGDKIHTASG 322
Score = 65.5 bits (158), Expect = 6e-07
Identities = 41/175 (23%), Positives = 82/175 (46%), Gaps = 28/175 (16%)
Frame = +1
Query: 4 WRLQILSTVDAHGFEGFLFGSVPIPP---------KLVDGEVNLEYTLWIRRDQLMFSWI 156
W Q+L+ + +G + G+ P K + VN Y W DQ + ++
Sbjct: 31 WSAQVLAAIRGARLDGHITGATAAPSMEIEKTASDKTTEKIVNPAYQEWFASDQQVLGFL 90
Query: 157 IASISESMLGYITRCTTSSDLWSVLETAFRSQPRARVQHLKAQLHSSKKGDLSISDYILH 336
++++S +L + +T++ W + F +Q +AR +++ L +++KG++SIS+Y
Sbjct: 91 LSTLSRDILTQVATASTAAQAWQQVCAMFTAQTKARSLNVRLTLTNTQKGNMSISEYCGK 150
Query: 337 MQGITDNIHAAG-------------------YESIVVNLTARAEELTLQDVQYAQ 444
M+ + D I ++G +E +V + AR E T+ +V Y+Q
Sbjct: 151 MKALADEIASSGKPLDEEDLVAYVLNGLDDDFEPVVSAIVARNESTTMAEV-YSQ 204
>emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]
Length = 1262
Score = 354 bits (909), Expect(4) = e-120
Identities = 183/397 (46%), Positives = 251/397 (63%), Gaps = 4/397 (1%)
Frame = +2
Query: 2495 YNVTNTTCEPKSVTDALSNSQWKAAMDAEFSALVKNHTWDLIPFHSHM-KIDHKWVFRVK 2671
Y V EP + +A+S+ +WK AMD EF AL+KN TW L+ ++ + +WVF++K
Sbjct: 738 YTVDLNVEEPNTFQEAISHPKWKEAMDEEFRALMKNKTWSLVSLPTNRTSVGCRWVFKLK 797
Query: 2672 YNPDGSIDQFKAHLVAKGFQQLPGVDYFDTFSPVVKPITIRLVFSLAVFRGWSIRHIDVN 2851
NPDGS+ ++KA LVAKG+ Q+PG D+++TFSPVVKP TIR+V ++AV + W IR +DVN
Sbjct: 798 RNPDGSVSRYKARLVAKGYSQVPGFDFYETFSPVVKPTTIRVVLAIAVSQSWCIRQLDVN 857
Query: 2852 NAFLYGDLKEDVYMSQPTGY--VDNSKPTHVCKLVKSIYGLKQAPKSWNDKLKFHLLSLG 3025
NAFL G+L+E+VYM QP G+ N + VCKL K++YGLKQAP++W DKLK L G
Sbjct: 858 NAFLNGELQEEVYMDQPPGFDGKTNQEQKLVCKLHKALYGLKQAPRAWFDKLKISLQQFG 917
Query: 3026 FLVSQSDSCLFYQRIQSHXXXXXXXXXXXXXMGDDSKLVTHVIDGIQISFSLKHLARVSY 3205
F ++SD LF + G S+ + +I ++ FSLK L +SY
Sbjct: 918 FSSTKSDQSLFVRFTNCSSLFVLVYVDDIVVTGSSSQEIHELISRLRGLFSLKDLGELSY 977
Query: 3206 FLGIQVNYIG-AGILLN*SKYILDLLKKTNMEDYNPCATPPCINQKLYLQDSALLENPTL 3382
FLGI+V G+ L+ KYI DLLKKT M+ TP KL ++N
Sbjct: 978 FLGIEVKKTADGGLHLSQKKYIQDLLKKTKMDGAKSLPTPMLSGLKLSAGMGDPIDNVFE 1037
Query: 3383 YRITVGALQYLTLTRPDISFIVNKLSQFLHAPTLSHWGACKRVLRYLRDSMTQGLLFQSS 3562
YR VGALQY+T+TRP+I+F VNK+ QF+ P +HW A KR+LRYL + G++ + S
Sbjct: 1038 YRSVVGALQYITITRPEIAFSVNKVCQFMQKPLDTHWKAVKRILRYLNGTTDLGIVLKPS 1097
Query: 3563 PRMNLESFADADWASSMDDRRSTSGYCAFLGPNIIAW 3673
MNL F DADW S +DDRRSTSG+C FLG ++++W
Sbjct: 1098 ETMNLVGFCDADWGSDVDDRRSTSGHCVFLGKSLVSW 1134
Score = 92.8 bits (229), Expect(4) = e-120
Identities = 44/90 (48%), Positives = 64/90 (71%)
Frame = +1
Query: 3646 ISWAQYHCVEFQKKQSVVARSSTETEYHSLASVTTELIWIKSFFAELGLAILPRSVI*CD 3825
+SW+ KKQ +RSSTE EY SLAS+T+E++W++S +EL + VI CD
Sbjct: 1132 VSWSS-------KKQHTTSRSSTEAEYRSLASLTSEMLWLQSLLSELQTKMTMVPVIWCD 1184
Query: 3826 NISAISLASNPGFHARTKHIEVDVHFIREK 3915
NIS +SL++NP H+RTKH+E+D++F+REK
Sbjct: 1185 NISTVSLSANPVLHSRTKHMELDLYFVREK 1214
Score = 36.6 bits (83), Expect(4) = e-120
Identities = 18/42 (42%), Positives = 26/42 (61%)
Frame = +3
Query: 3912 KIAAKDVEVRFLPSEDQVADVLTKPIVAAQFHNLCSKLSLQS 4037
K+ + + V +P+EDQVADV TKP+ F L KL++ S
Sbjct: 1214 KVMERKLVVNHVPTEDQVADVFTKPLSFRFFDKLREKLTVAS 1255
Score = 23.9 bits (50), Expect(4) = e-120
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +3
Query: 2454 MLTRSKLGIFKP 2489
M+TRSK GIFKP
Sbjct: 724 MVTRSKNGIFKP 735
Score = 149 bits (376), Expect(2) = 2e-43
Identities = 65/126 (51%), Positives = 93/126 (73%)
Frame = +2
Query: 1769 PYTHQQNGKPKRKHQHIVNVGLSFLAHSNIPYCFWWDAFVSAIFTINRRPTSTLNHLSPF 1948
P+T +QNG +RKH+HIV +GL+ LA +++P +W DAF +A+F INR PT L P+
Sbjct: 468 PHTSKQNGIIERKHRHIVELGLTLLAQASLPLKYWPDAFSTAVFLINRLPTEVLKQKCPY 527
Query: 1949 QKLFGSIPDYNFLKSFGCACYPYLRLYNQSKLQFRSTKCVFLGYSPAHKGYRCLSPSGKI 2128
+ LF S P+Y+ LK FGC C+P+LR YN+ KL FRS+ C FLGYS HKGY+CL+ G++
Sbjct: 528 EFLFNSKPNYSQLKVFGCLCFPHLRPYNKHKLDFRSSPCTFLGYSSKHKGYKCLNQQGRM 587
Query: 2129 YVARTV 2146
+++R+V
Sbjct: 588 FISRSV 593
Score = 58.5 bits (140), Expect(2) = 2e-43
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Frame = +3
Query: 1536 SSNGYKYYIHFVDDFTNYTWICPLNTKGEALTALKHFNSVVKTQVNSHIHTFQCDWGG*F 1715
SS G+ YY+ F D ++ YTW+ L TK + A F + + Q + TFQ DWGG F
Sbjct: 390 SSYGFTYYVSFXDAYSRYTWVYXLKTKSQTREAFLMFKAQAELQFGCKLKTFQTDWGGEF 449
Query: 1716 RPI-AYF 1733
R + YF
Sbjct: 450 RSLKTYF 456
Score = 45.8 bits (107), Expect(2) = 2e-06
Identities = 20/35 (57%), Positives = 25/35 (71%)
Frame = +2
Query: 887 WFMDSGATAHVTSDLKNLSLQSAYTGSDKLTIGNG 991
WF DSGAT HVT DL NL+ + Y G+ K+ +GNG
Sbjct: 267 WFPDSGATNHVTHDLGNLNSGAEYNGNSKIHMGNG 301
Score = 37.4 bits (85), Expect(2) = 2e-06
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = +1
Query: 1090 QNLLSIPQFTKDNRVFIEFHHDSCFVKDKLTHRILLKGSLQGGLYQLDLTPLQPQSSANL 1269
+N LS+ QF +DN V+ EFH KG+L GLYQ +L+ ++ L
Sbjct: 337 KNXLSVSQFXRDNNVYFEFHP---------------KGNLHKGLYQFNLSKKLFGKASGL 381
Query: 1270 HSSTAQFSNS 1299
S A ++S
Sbjct: 382 SLSNAPINSS 391
>gb|KHN17953.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Glycine
soja]
Length = 1294
Score = 362 bits (929), Expect(3) = e-120
Identities = 184/386 (47%), Positives = 251/386 (65%), Gaps = 1/386 (0%)
Frame = +2
Query: 2519 EPKSVTDALSNSQWKAAMDAEFSALVKNHTWDLIPFHSHMK-IDHKWVFRVKYNPDGSID 2695
EP ++T AL + W++AM AEF AL N+TWDL+ S + KWVFR+K NPDGSID
Sbjct: 775 EPNTITQALRDPDWRSAMQAEFDALHHNNTWDLVSRSSDQNLVGCKWVFRIKRNPDGSID 834
Query: 2696 QFKAHLVAKGFQQLPGVDYFDTFSPVVKPITIRLVFSLAVFRGWSIRHIDVNNAFLYGDL 2875
++KA LVAKGF Q G DY +TFSPVVKP+TIR+V +LAV +GW IR +DVNNAFL G L
Sbjct: 835 RYKARLVAKGFHQRSGWDYTETFSPVVKPVTIRIVLTLAVRQGWPIRQLDVNNAFLQGTL 894
Query: 2876 KEDVYMSQPTGYVDNSKPTHVCKLVKSIYGLKQAPKSWNDKLKFHLLSLGFLVSQSDSCL 3055
KE+V+M QP G+V+ + P HVC+L K++YGLKQAP++W +L+ L SLGF+ S +D+ L
Sbjct: 895 KEEVFMIQPPGFVNKNFPDHVCRLKKALYGLKQAPRAWYTELRIFLFSLGFVNSTADASL 954
Query: 3056 FYQRIQSHXXXXXXXXXXXXXMGDDSKLVTHVIDGIQISFSLKHLARVSYFLGIQVNYIG 3235
F + G+ S ++ +I + FSLK L +SYFLG++V
Sbjct: 955 FIYQKPEVTLYLLVYVDDIIMTGNSSAELSKLIATLAARFSLKDLGCLSYFLGVEVIPSA 1014
Query: 3236 AGILLN*SKYILDLLKKTNMEDYNPCATPPCINQKLYLQDSALLENPTLYRITVGALQYL 3415
AG+ L+ KYI+DLL K+ M + P +TP + +L LL +P YR VG+LQYL
Sbjct: 1015 AGMFLSQRKYIIDLLHKSGMTNTKPASTPLSASVQLLKDSGDLLPSPNEYRTLVGSLQYL 1074
Query: 3416 TLTRPDISFIVNKLSQFLHAPTLSHWGACKRVLRYLRDSMTQGLLFQSSPRMNLESFADA 3595
+LTRPDI+F NKL+QF+ P +HW A KRVLRYL S +G+ ++ + +++DA
Sbjct: 1075 SLTRPDIAFSTNKLAQFMQNPRTAHWSALKRVLRYLAGSCDKGVFISATAPLTFHAYSDA 1134
Query: 3596 DWASSMDDRRSTSGYCAFLGPNIIAW 3673
DWA DD ST+GY +LG I+W
Sbjct: 1135 DWAGDKDDYVSTTGYLLYLGNTPISW 1160
Score = 84.7 bits (208), Expect(3) = e-120
Identities = 43/89 (48%), Positives = 56/89 (62%)
Frame = +1
Query: 3646 ISWAQYHCVEFQKKQSVVARSSTETEYHSLASVTTELIWIKSFFAELGLAILPRSVI*CD 3825
ISW+ +KQ VARSSTE EY +LA +EL+W+ S F ELG VI CD
Sbjct: 1158 ISWSS-------RKQRSVARSSTEAEYKALADTASELLWVLSLFTELGHMPTANPVIYCD 1210
Query: 3826 NISAISLASNPGFHARTKHIEVDVHFIRE 3912
N+ A +L++NP FH+R KHI + HF+RE
Sbjct: 1211 NLGATNLSANPVFHSRMKHIALAYHFVRE 1239
Score = 39.3 bits (90), Expect(3) = e-120
Identities = 17/34 (50%), Positives = 26/34 (76%)
Frame = +3
Query: 3936 VRFLPSEDQVADVLTKPIVAAQFHNLCSKLSLQS 4037
V F+ ++DQ+AD+LTKP++ +F +L SKL L S
Sbjct: 1248 VSFVSTDDQLADILTKPLLRPRFESLLSKLHLSS 1281
Score = 119 bits (299), Expect(5) = 3e-52
Identities = 56/127 (44%), Positives = 78/127 (61%), Gaps = 1/127 (0%)
Frame = +2
Query: 1769 PYTHQQNGKPKRKHQHIVNVGLSFLAHSNIPYCFWWDAFVSAIFTINRRPTSTLNHLSPF 1948
P+T + NG +R+++HI GLS L HS +P +W A +A + INR PT L + SP+
Sbjct: 527 PHTPEHNGISERRNRHIAETGLSLLHHSGLPLTYWPHAMTTAAYLINRLPTPILGYQSPY 586
Query: 1949 QKLFGSIPDYNFLKSFGCACYPYLRLYNQSKLQFRSTKCVFLGYSPAHKGYRCLSP-SGK 2125
KL PDY+ LK FGC C+P+++ Y KL +S CVF+GYS Y CL P +G+
Sbjct: 587 SKLLNISPDYHKLKCFGCLCFPWIKPYANHKLAPKSAMCVFVGYSADQHAYLCLDPTTGR 646
Query: 2126 IYVARTV 2146
IY +R V
Sbjct: 647 IYTSRHV 653
Score = 65.1 bits (157), Expect(5) = 3e-52
Identities = 44/145 (30%), Positives = 69/145 (47%), Gaps = 1/145 (0%)
Frame = +1
Query: 1090 QNLLSIPQFTKDNRVFIEFHHDSCFVKDKLTHRILLKGSLQGGLYQLDLTPLQPQSSANL 1269
Q ++S+ + T+ + F +S +VKD T KGS GLY L P +S ++
Sbjct: 316 QKIISVSKLTQQTNSAVVFLPNSFYVKDLQTGHTTHKGSCVDGLY------LWPATSPSV 369
Query: 1270 HSSTAQFSNSANIVVSDVNLWQKRLGHCSSAVLNNVLKQIK-GFNSSSQLEFCHACQLGK 1446
H+ + S S W RLGH SS++ V K G N Q + C++CQ+ K
Sbjct: 370 HTVRTESSAS----------WHHRLGHPSSSIFKFVQKHFSLGSNKFPQSD-CNSCQISK 418
Query: 1447 LKSVSFPPVESKTTAPFQLVYSDVW 1521
+ F K+ P ++++SDVW
Sbjct: 419 SHKLPFHESTLKSCYPLEIIFSDVW 443
Score = 47.4 bits (111), Expect(5) = 3e-52
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Frame = +2
Query: 785 CLPISSQMPFPSPPQYANSASS----VSEYGYPGNESAWFMDSGATAHVTSDLKNLSLQS 952
C Q P PP + A + V+ ++ + DSGAT HVT+DL NL+L
Sbjct: 215 CKTFQQQHPSVPPPPRNSPAHTGQVQVNTATAGPSQHDFLFDSGATHHVTNDLDNLALHH 274
Query: 953 AYTGSDKLTIGNG 991
YTG D L +GNG
Sbjct: 275 PYTGPDSLFMGNG 287
Score = 46.2 bits (108), Expect(5) = 3e-52
Identities = 23/68 (33%), Positives = 34/68 (50%)
Frame = +3
Query: 1533 ISSNGYKYYIHFVDDFTNYTWICPLNTKGEALTALKHFNSVVKTQVNSHIHTFQCDWGG* 1712
+S +G +YY FVD FT Y W+ P+ K + T F S+V+ + I D GG
Sbjct: 448 LSIDGLRYYCMFVDHFTRYIWLYPMKRKSDVQTIFPKFKSLVENFYHHKIKILYTDNGGE 507
Query: 1713 FRPIAYFL 1736
+ + FL
Sbjct: 508 YIGLRPFL 515
Score = 20.4 bits (41), Expect(5) = 3e-52
Identities = 6/14 (42%), Positives = 8/14 (57%)
Frame = +3
Query: 639 CQICGKNNHIASKC 680
CQ C H+ S+C
Sbjct: 202 CQWCNIKGHVLSQC 215
>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
Length = 1436
Score = 372 bits (955), Expect(2) = e-120
Identities = 186/396 (46%), Positives = 256/396 (64%), Gaps = 3/396 (0%)
Frame = +2
Query: 2495 YNVTNTTCEPKSVTDALSNSQWKAAMDAEFSALVKNHTWDLIPFHSHMK-IDHKWVFRVK 2671
Y +T EP++ +AL + WKAAM+AE+ AL+KN TW L+P+ I KWV+++K
Sbjct: 919 YGCFTSTGEPQNDKEALGDKNWKAAMEAEYDALIKNDTWHLVPYEKGQNVIGCKWVYKIK 978
Query: 2672 YNPDGSIDQFKAHLVAKGFQQLPGVDYFDTFSPVVKPITIRLVFSLAVFRGWSIRHIDVN 2851
DG++D++KA LVAKGF+Q G+DY DTFSPVVK TIR++ S+AV RGWS+R +DV
Sbjct: 979 RKADGTLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILSIAVSRGWSLRQLDVQ 1038
Query: 2852 NAFLYGDLKEDVYMSQPTGYVDNSKPTHVCKLVKSIYGLKQAPKSWNDKLKFHLLSLGFL 3031
NAFL+G L+E+VYM QP G+ SKP +VCKL K++YGLKQAP++W +L L+ LGF
Sbjct: 1039 NAFLHGFLEEEVYMQQPPGFESFSKPNYVCKLDKALYGLKQAPRAWYSRLSKKLVELGFE 1098
Query: 3032 VSQSDSCLFYQRIQSHXXXXXXXXXXXXXMGDDSKLVTHVIDGIQISFSLKHLARVSYFL 3211
S++D+ LF+ K T ++ + F+LK L + YFL
Sbjct: 1099 ASKADTSLFFLNKGGIIMFVLVYVDDIIIASSTEKATTALLKDLNKEFALKDLGDLHYFL 1158
Query: 3212 GIQVNYIGAGILLN*SKYILDLLKKTNMEDYNPCATPPCINQKLYLQDSALL--ENPTLY 3385
GI+V + GI+L KY DLLK+ NM + P +TP +++KL L + + L + T Y
Sbjct: 1159 GIEVTKVPNGIVLTQEKYANDLLKRVNMSNCKPVSTPLSVSEKLTLYEGSPLGPNDATQY 1218
Query: 3386 RITVGALQYLTLTRPDISFIVNKLSQFLHAPTLSHWGACKRVLRYLRDSMTQGLLFQSSP 3565
R VGALQYLTLTRPDI++ VNK+ QFLHAPT HW A KR+LRYL + GL S
Sbjct: 1219 RSIVGALQYLTLTRPDIAYSVNKVCQFLHAPTTDHWTAVKRILRYLNQCTSLGLNIHKSA 1278
Query: 3566 RMNLESFADADWASSMDDRRSTSGYCAFLGPNIIAW 3673
+ ++DADWA S+DDR+ST G+ FLG N+++W
Sbjct: 1279 STLVHGYSDADWAGSVDDRKSTGGFAVFLGSNLVSW 1314
Score = 92.0 bits (227), Expect(2) = e-120
Identities = 45/88 (51%), Positives = 61/88 (69%)
Frame = +1
Query: 3682 KKQSVVARSSTETEYHSLASVTTELIWIKSFFAELGLAILPRSVI*CDNISAISLASNPG 3861
+KQ V+RSSTE EY ++A+ T ELIW+++ ELG+ + I CDN+ A L++NP
Sbjct: 1317 RKQPTVSRSSTEAEYKAVANTTAELIWVQTLLRELGIDSPKAAKIWCDNLGAKYLSANPV 1376
Query: 3862 FHARTKHIEVDVHFIREK*LLKTLKFVF 3945
FHARTKHIEVD HF+RE+ K L+ F
Sbjct: 1377 FHARTKHIEVDYHFVRERVSQKLLEIDF 1404
Score = 155 bits (393), Expect(2) = 2e-46
Identities = 69/127 (54%), Positives = 97/127 (76%), Gaps = 1/127 (0%)
Frame = +2
Query: 1769 PYTHQQNGKPKRKHQHIVNVGLSFLAHSNIPYCFWWDAFVSAIFTINRRPTSTLNHLSPF 1948
P+THQQNG +RKH+HI+ VGLS L+++++P FW +AFV+A + INR P+ T+ + +P
Sbjct: 607 PHTHQQNGSAERKHRHIIEVGLSLLSYASMPLKFWDEAFVAATYLINRVPSKTIQNSTPL 666
Query: 1949 QKLFGSIPDYNFLKSFGCACYPYLRLYNQSKLQFRSTKCVFLGYSPAHKGYRCLS-PSGK 2125
+KLF PDY L+ FGCAC+P+LR YN KLQFRS +CVFLG+S HKG++CL SG+
Sbjct: 667 EKLFNQKPDYLSLRVFGCACWPHLRPYNTHKLQFRSKQCVFLGFSTHHKGFKCLDVSSGR 726
Query: 2126 IYVARTV 2146
+Y++R V
Sbjct: 727 VYISRDV 733
Score = 61.6 bits (148), Expect(2) = 2e-46
Identities = 30/109 (27%), Positives = 52/109 (47%)
Frame = +3
Query: 1425 SCMSIRQTKICVLSSS*IKNYCPFSTCLFGCMGPASISSNGYKYYIHFVDDFTNYTWICP 1604
+C + ++ + S+ + + P GPA S KYY+ F+DDF+ +TWI
Sbjct: 493 ACQEAKSRQLPYVRSTSVSQF-PLELVFSDVWGPAPESVGRNKYYVSFIDDFSKFTWIYL 551
Query: 1605 LNTKGEALTALKHFNSVVKTQVNSHIHTFQCDWGG*FRPIAYFLSSLKV 1751
L K E K F ++V+ + I Q DWGG ++ + F + + +
Sbjct: 552 LKYKSEVFEKFKEFQALVERMFDRKIIAMQTDWGGEYQKLNSFFAKIGI 600
Score = 67.0 bits (162), Expect(3) = 2e-18
Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 6/150 (4%)
Frame = +1
Query: 1090 QNLLSIPQFTKDNRVFIEFHHDSCFVKDKLTHRILLKGSLQGGLYQLDLTPLQPQSSANL 1269
++L+S Q DN F+E H +KD++T ILL+G + GLY + P+S
Sbjct: 389 KSLISASQLATDNSAFLELHSKFFSIKDQVTKDILLEGRCRHGLYPI------PKSFGRT 442
Query: 1270 HSSTAQFSNSANIVVSDVNLWQKRLGHCSSAVL------NNVLKQIKGFNSSSQLEFCHA 1431
S A + ++ + W RLGH S ++ NN+ ++ N S C+A
Sbjct: 443 TSKQALGTTKLSL-----SRWHSRLGHPSLPIVKQVISKNNLPCSVESVNQS----VCNA 493
Query: 1432 CQLGKLKSVSFPPVESKTTAPFQLVYSDVW 1521
CQ K + + + S + P +LV+SDVW
Sbjct: 494 CQEAKSRQLPYVRSTSVSQFPLELVFSDVW 523
Score = 40.8 bits (94), Expect(3) = 2e-18
Identities = 16/51 (31%), Positives = 33/51 (64%)
Frame = +2
Query: 839 SASSVSEYGYPGNESAWFMDSGATAHVTSDLKNLSLQSAYTGSDKLTIGNG 991
+A++ + YG N W++D+GAT H+T +L+ L+ + Y G++++ +G
Sbjct: 309 AAAATNSYGIDTN---WYIDTGATDHITGELEKLTTKEKYNGNEQIHTASG 356
Score = 36.2 bits (82), Expect(3) = 2e-18
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +3
Query: 630 RPSCQICGKNNHIASKCFKRFDVNFTGVDLSSAQA 734
RP+CQ+C K H A+ C+ RFD ++ + +A A
Sbjct: 278 RPTCQVCFKRGHTAADCWYRFDEDYVADEKLAAAA 312
Score = 68.6 bits (166), Expect = 7e-08
Identities = 35/131 (26%), Positives = 68/131 (51%), Gaps = 8/131 (6%)
Frame = +1
Query: 4 WRLQILSTVDAHGFEGFLFGSVPIPPK----LVDGEV----NLEYTLWIRRDQLMFSWII 159
W+ Q+ + V +G L G+V P +DG+ N + W DQL+ +++
Sbjct: 32 WKAQVSAAVRGARLQGHLTGAVKAPDAELSVTIDGKTTTKPNPAFEDWDANDQLVLGYLL 91
Query: 160 ASISESMLGYITRCTTSSDLWSVLETAFRSQPRARVQHLKAQLHSSKKGDLSISDYILHM 339
+S+S +L + C T+++ W +E + + RAR + + L ++KKG + I++Y+ M
Sbjct: 92 SSLSRDVLIQVATCKTAAEAWRAIEGLYSTGTRARAVNTRLALTNTKKGTMKIAEYVAKM 151
Query: 340 QGITDNIHAAG 372
+ + D + A G
Sbjct: 152 RALGDEMAAGG 162
>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
gi|531389|gb|AAA57005.1| copia-like retrotransposon
Hopscotch polyprotein [Zea mays]
Length = 1439
Score = 373 bits (958), Expect(2) = e-120
Identities = 196/395 (49%), Positives = 255/395 (64%), Gaps = 3/395 (0%)
Frame = +2
Query: 2498 NVTNTTCEPKSVTDALSNSQWKAAMDAEFSALVKNHTWDLIP-FHSHMKIDHKWVFRVKY 2674
N EP SV++AL++ QW+AAM+AEF AL KN+TW L+P + ID KWVF+VKY
Sbjct: 917 NAAARITEPSSVSEALADPQWRAAMEAEFQALQKNNTWTLVPPDRTRNLIDCKWVFKVKY 976
Query: 2675 NPDGSIDQFKAHLVAKGFQQLPGVDYFDTFSPVVKPITIRLVFSLAVFRGWSIRHIDVNN 2854
N DGSID+ KA LVAKGF+Q G+DY DTFSPVVK TIRLV SLAV + WS+R +DV N
Sbjct: 977 NADGSIDRLKARLVAKGFKQQYGIDYDDTFSPVVKHSTIRLVLSLAVSQKWSLRQLDVQN 1036
Query: 2855 AFLYGDLKEDVYMSQPTGYVDNSKPTHVCKLVKSIYGLKQAPKSWNDKLKFHLLSLGFLV 3034
AFL+G L+E VYM QP G+ D + P + C L KS+YGLKQ P++W +L L SLGF+
Sbjct: 1037 AFLHGILEETVYMKQPPGFADTTHPNYHCHLQKSLYGLKQRPRAWYSRLSEKLQSLGFVP 1096
Query: 3035 SQSDSCLFYQRIQSHXXXXXXXXXXXXXMGDDSKLVTHVIDGIQISFSLKHLARVSYFLG 3214
S++D LF S G + +V+ ++ F++K L + YFLG
Sbjct: 1097 SKADVSLFIYNAHSTAIYILVYVDDIIITGSSPHAIDNVLAKLKDDFAIKDLGDLHYFLG 1156
Query: 3215 IQVNYIGAGILLN*SKYILDLLKKTNMEDYNPCATPPCINQKLYLQDSALL--ENPTLYR 3388
I+V+ G G+LL KY DLLK+ ME P TP ++KL LL E T YR
Sbjct: 1157 IEVHRKGDGLLLCQEKYARDLLKRVGMECCKPVHTPVATSEKLSASAGTLLSPEETTKYR 1216
Query: 3389 ITVGALQYLTLTRPDISFIVNKLSQFLHAPTLSHWGACKRVLRYLRDSMTQGLLFQSSPR 3568
VGALQYLTLTRPD+S+ +N++ QFLHAPT HW A KR+LR ++ ++ GL + S
Sbjct: 1217 SVVGALQYLTLTRPDLSYAINRVCQFLHAPTDLHWTAVKRILRNIQHTIGLGLTIRPSLS 1276
Query: 3569 MNLESFADADWASSMDDRRSTSGYCAFLGPNIIAW 3673
+ L +F+DADWA DDR+ST GY FLGPN+I+W
Sbjct: 1277 LMLSAFSDADWAGCPDDRKSTGGYALFLGPNLISW 1311
Score = 90.5 bits (223), Expect(2) = e-120
Identities = 44/84 (52%), Positives = 60/84 (71%)
Frame = +1
Query: 3682 KKQSVVARSSTETEYHSLASVTTELIWIKSFFAELGLAILPRSVI*CDNISAISLASNPG 3861
KKQS V+RSSTE EY ++A+ T E+IW++S ELG+ + + CDN+ A L+S P
Sbjct: 1314 KKQSTVSRSSTEAEYKAMANATAEVIWLQSLLHELGIRLTGIPRLWCDNLGATYLSSKPI 1373
Query: 3862 FHARTKHIEVDVHFIREK*LLKTL 3933
F+ARTKHIEVD HF+R++ L K L
Sbjct: 1374 FNARTKHIEVDFHFVRDRVLSKKL 1397
Score = 162 bits (409), Expect(4) = 7e-71
Identities = 74/127 (58%), Positives = 98/127 (77%), Gaps = 1/127 (0%)
Frame = +2
Query: 1769 PYTHQQNGKPKRKHQHIVNVGLSFLAHSNIPYCFWWDAFVSAIFTINRRPTSTLNHLSPF 1948
P+THQQNG +RKH+HIV VGL+ LA S++P +W AF++A++ INR P+ T+ H +P
Sbjct: 607 PHTHQQNGAAERKHRHIVEVGLALLAQSSMPLKYWDHAFLAAVYLINRTPSKTIAHDTPL 666
Query: 1949 QKLFGSIPDYNFLKSFGCACYPYLRLYNQSKLQFRSTKCVFLGYSPAHKGYRCLSPS-GK 2125
KL G+ PDY+ L+ FGCAC+P LR YNQ KLQFRST+CVFLGYS HKG++CL S G+
Sbjct: 667 HKLTGATPDYSSLRIFGCACWPNLRPYNQHKLQFRSTRCVFLGYSNMHKGFKCLDISTGR 726
Query: 2126 IYVARTV 2146
IY++R V
Sbjct: 727 IYISRDV 733
Score = 77.0 bits (188), Expect(4) = 7e-71
Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 2/147 (1%)
Frame = +1
Query: 1087 YQNLLSIPQFTKDNRVFIEFHHDSCFVKDKLTHRILLKGSLQGGLYQLDLTPLQPQSSAN 1266
++NL+S+ + T DN VFIEFH +KD+ T +LL G + GLY PL P
Sbjct: 389 HKNLISVHRLTNDNDVFIEFHSSHFLIKDRQTKAVLLHGKCRDGLY-----PLPPHPDLR 443
Query: 1267 LHSSTAQFSNSANIVVSDVNLWQKRLGHCSSAVLNNVL--KQIKGFNSSSQLEFCHACQL 1440
L + FS++ + W KRLGH S +++ V+ + +++S C AC
Sbjct: 444 LKHN---FSSTR----VPLEHWHKRLGHPSRDIVHRVISNNNLPCLSNNSTTSVCDACLQ 496
Query: 1441 GKLKSVSFPPVESKTTAPFQLVYSDVW 1521
K + + S+++AP L++SDV+
Sbjct: 497 AKAHQLPYTISMSQSSAPLMLIFSDVF 523
Score = 56.6 bits (135), Expect(4) = 7e-71
Identities = 25/63 (39%), Positives = 34/63 (53%)
Frame = +3
Query: 1521 GPASISSNGYKYYIHFVDDFTNYTWICPLNTKGEALTALKHFNSVVKTQVNSHIHTFQCD 1700
GPA S YKYY+ F+DD++ +TWI L K + + F +V+ I FQ D
Sbjct: 524 GPAIDSFGRYKYYVSFIDDYSKFTWIYLLRHKSDVYKSFCEFQHLVERMFGRKIIAFQSD 583
Query: 1701 WGG 1709
WGG
Sbjct: 584 WGG 586
Score = 45.8 bits (107), Expect(4) = 7e-71
Identities = 21/53 (39%), Positives = 32/53 (60%)
Frame = +2
Query: 833 ANSASSVSEYGYPGNESAWFMDSGATAHVTSDLKNLSLQSAYTGSDKLTIGNG 991
ANSA+ + G+ W+ D+GAT H+T DL L++ YTG+D++ NG
Sbjct: 310 ANSAAHQN-----GSNVPWYTDTGATDHITGDLDRLTMHDKYTGTDQIIAANG 357
Score = 84.3 bits (207), Expect = 1e-12
Identities = 49/189 (25%), Positives = 88/189 (46%), Gaps = 26/189 (13%)
Frame = +1
Query: 4 WRLQILSTVDAHGFEGFLFGSVPIPPKLVDGE-------VNLEYTLWIRRDQLMFSWIIA 162
W+ Q+L + A + L G PPK + N Y WI RDQ + ++++
Sbjct: 32 WKAQVLPAIRAAQLDDILTGVEICPPKTISDASDRTVTVANPAYGRWIARDQAVLGYLLS 91
Query: 163 SISESMLGYITRCTTSSDLWSVLETAFRSQPRARVQHLKAQLHSSKKGDLSISDYILHMQ 342
S+S +L + C+TS+ +W+ L + S RAR + + L ++KKG S+++Y M+
Sbjct: 92 SLSREVLSSVVNCSTSASVWTTLSEMYSSHSRARKVNTRIALATTKKGASSVAEYFAKMR 151
Query: 343 GITDNIHAAG-------------------YESIVVNLTARAEELTLQDVQYAQQTHEMRL 465
G D + AAG + +V + AR++ +T D+ ++E R+
Sbjct: 152 GFADELGAAGKPLDDEEFVSFLLTGLDEDFNPLVTAVVARSDPITPGDLYTQLLSYENRM 211
Query: 466 QQQISTESV 492
Q + S+
Sbjct: 212 HLQTGSSSL 220
>gb|KYP64898.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1007
Score = 360 bits (923), Expect(4) = e-120
Identities = 182/389 (46%), Positives = 248/389 (63%), Gaps = 2/389 (0%)
Frame = +2
Query: 2513 TCEPKSVTDALSNSQWKAAMDAEFSALVKNHTWDLIPFHSHMK-IDHKWVFRVKYNPDGS 2689
T EP +V +AL+ +W AM E+ ALV N TW L+ K I KW+F+ KYNPDGS
Sbjct: 486 TIEPNTVKEALAKPEWLKAMKDEYQALVSNQTWSLVDLPIGYKPIGCKWIFKSKYNPDGS 545
Query: 2690 IDQFKAHLVAKGFQQLPGVDYFDTFSPVVKPITIRLVFSLAVFRGWSIRHIDVNNAFLYG 2869
+ KA LVAKG+ Q PG+D+ +TFSPVVKP T+R+V SLA+ W I ID+NN FL+G
Sbjct: 546 FQRHKARLVAKGYNQKPGLDFSETFSPVVKPTTVRIVLSLAITNQWPIHQIDINNVFLHG 605
Query: 2870 DLKEDVYMSQPTGYVDNSKPTHVCKLVKSIYGLKQAPKSWNDKLKFHLLSLGFLVSQSDS 3049
DL+E VYMSQP G+ K VCKL K+IYGLKQAP+SW KL L+ +GF ++SD+
Sbjct: 606 DLQESVYMSQPPGFNTQHKDK-VCKLNKAIYGLKQAPRSWYCKLSNTLIQMGFHSTKSDT 664
Query: 3050 CLFYQRIQSHXXXXXXXXXXXXXMGDDSKLVTHVIDGIQISFSLKHLARVSYFLGIQVNY 3229
LF + ++ G+ + + VI + FSLK L + YFLG++V
Sbjct: 665 SLFVRFSKTTTLMLLIYVDDIIITGNSKEEIRSVISFLHDKFSLKDLGSLHYFLGVEVTT 724
Query: 3230 IGAG-ILLN*SKYILDLLKKTNMEDYNPCATPPCINQKLYLQDSALLENPTLYRITVGAL 3406
G +LL +KY+ ++L K +M D P TP N KL ++ + +P+ YR VGAL
Sbjct: 725 TKEGNLLLTQTKYLREILHKASMSDSTPQPTPMLANLKLTENETTSVPDPSFYRSIVGAL 784
Query: 3407 QYLTLTRPDISFIVNKLSQFLHAPTLSHWGACKRVLRYLRDSMTQGLLFQSSPRMNLESF 3586
QYLT+TRPD+SF VNK+ Q++H P HW A KR+LRYL+ ++ GLL Q + ++NL F
Sbjct: 785 QYLTITRPDVSFAVNKVCQYMHCPQEHHWKAVKRILRYLQGTIHHGLLIQKNKQLNLAGF 844
Query: 3587 ADADWASSMDDRRSTSGYCAFLGPNIIAW 3673
D+DW + DDR+STSGYC +LG N+I+W
Sbjct: 845 CDSDWGNDKDDRKSTSGYCVYLGSNLISW 873
Score = 83.2 bits (204), Expect(4) = e-120
Identities = 42/91 (46%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
Frame = +1
Query: 3646 ISWAQYHCVEFQKKQSVVARSSTETEYHSLASVTTELIWIKSFFAELGLA-ILPRSVI*C 3822
ISW+ +KQ V+RS+TE EY S+A V ++IWI+S +EL + LPR I C
Sbjct: 871 ISWSS-------RKQKSVSRSTTEAEYRSIADVAADIIWIQSLLSELRVPKSLPR--IYC 921
Query: 3823 DNISAISLASNPGFHARTKHIEVDVHFIREK 3915
DN+SA+ + +NP H++TKH E+D+HF+R+K
Sbjct: 922 DNLSAVLITANPVLHSKTKHFELDLHFVRDK 952
Score = 37.4 bits (85), Expect(4) = e-120
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = +3
Query: 3912 KIAAKDVEVRFLPSEDQVADVLTKPIVAAQFHNLCSKL 4025
K+ +V+V LP++ QVAD LTKP+ FH+ +KL
Sbjct: 952 KVKQNEVKVIHLPAKYQVADTLTKPLAKQHFHHFRNKL 989
Score = 25.8 bits (55), Expect(4) = e-120
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +3
Query: 2454 MLTRSKLGIFKPK 2492
M TRSK GIFKPK
Sbjct: 460 MTTRSKAGIFKPK 472
Score = 167 bits (423), Expect(2) = 4e-45
Identities = 73/126 (57%), Positives = 93/126 (73%)
Frame = +2
Query: 1769 PYTHQQNGKPKRKHQHIVNVGLSFLAHSNIPYCFWWDAFVSAIFTINRRPTSTLNHLSPF 1948
P+THQQNG P+RKH+HI GL+ LA +++P FW +AF++A IN PT L++ SP+
Sbjct: 245 PHTHQQNGSPERKHRHITETGLTLLAQASLPLSFWGEAFLTATSLINMLPTPNLDNASPY 304
Query: 1949 QKLFGSIPDYNFLKSFGCACYPYLRLYNQSKLQFRSTKCVFLGYSPAHKGYRCLSPSGKI 2128
+ LF PDY FLK FGCACYP LR YN K F+S +C+FLGYSP+HKGY CLSPSGK
Sbjct: 305 EMLFHKAPDYKFLKIFGCACYPLLRPYNPHKFDFKSQQCLFLGYSPSHKGYICLSPSGKR 364
Query: 2129 YVARTV 2146
Y++R V
Sbjct: 365 YISRNV 370
Score = 45.8 bits (107), Expect(2) = 4e-45
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +3
Query: 1521 GPASISS-NGYKYYIHFVDDFTNYTWICPLNTKGEALTALKHFNSVVKTQVNSHIHTFQC 1697
GP+ I+S +G +YYI F+D F+ Y+WI L K +AL A S+ + Q+ + + Q
Sbjct: 161 GPSPIASTDGSRYYIVFLDAFSKYSWIYLLQYKSQALYAFLQLKSLAEKQLGTKLKALQS 220
Query: 1698 D 1700
D
Sbjct: 221 D 221
Score = 89.7 bits (221), Expect = 2e-14
Identities = 53/163 (32%), Positives = 93/163 (57%), Gaps = 1/163 (0%)
Frame = +1
Query: 1090 QNLLSIPQFTKDNRVFIEFHHDSCFVKDKLTHRILLKGSLQGGLYQLDLTPLQPQSSANL 1269
+NLLS+ +F +DN V+ EF D C VK + T++I+L+G LQ GLY L+ S +
Sbjct: 21 KNLLSVSKFARDNCVYFEFFPDVCNVKTQDTNQIILQGRLQQGLYVFP--NLKTTDSYSA 78
Query: 1270 HSSTAQFSNSANIVVSDVNLWQKRLGHCSSAVLNNVLKQIK-GFNSSSQLEFCHACQLGK 1446
+ + + +++ + S++ LW RLGH SS ++ VL + + N+++ L CH+C LGK
Sbjct: 79 YQAVTELNSAQSF--SNLQLWHARLGHPSSKIVKTVLDKCQISCNTNNNLN-CHSCCLGK 135
Query: 1447 LKSVSFPPVESKTTAPFQLVYSDVWVLLPFLVMVTNIIYILLM 1575
+ + F + + P +LV++D+W P + YI+ +
Sbjct: 136 VHQLPFIQSTTVYSKPLELVFTDIWGPSPIASTDGSRYYIVFL 178
>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|108706314|gb|ABF94109.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1247
Score = 371 bits (953), Expect(2) = e-119
Identities = 188/390 (48%), Positives = 254/390 (65%), Gaps = 3/390 (0%)
Frame = +2
Query: 2513 TCEPKSVTDALSNSQWKAAMDAEFSALVKNHTWDLIPFHSHMK-IDHKWVFRVKYNPDGS 2689
T EP+++ DAL ++ WK AMDAEF AL N TW L+P ID KWV+++K DGS
Sbjct: 736 TGEPENLDDALKDNNWKKAMDAEFMALQNNKTWHLVPPQKGRNVIDCKWVYKIKRKQDGS 795
Query: 2690 IDQFKAHLVAKGFQQLPGVDYFDTFSPVVKPITIRLVFSLAVFRGWSIRHIDVNNAFLYG 2869
+D++KA LVAKGF+Q G+DY DTFSPVVK TIR++ S+AV +GW +R +DV NAFL+G
Sbjct: 796 LDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILSIAVSKGWCMRQLDVQNAFLHG 855
Query: 2870 DLKEDVYMSQPTGYVDNSKPTHVCKLVKSIYGLKQAPKSWNDKLKFHLLSLGFLVSQSDS 3049
L+E+VYM QP GY D+S P +VCKL K++YGLKQAP++W +L L +GF S++D+
Sbjct: 856 VLEEEVYMKQPPGYEDSSLPGYVCKLDKALYGLKQAPRAWYSRLSKKLYDMGFQGSKADT 915
Query: 3050 CLFYQRIQSHXXXXXXXXXXXXXMGDDSKLVTHVIDGIQISFSLKHLARVSYFLGIQVNY 3229
LF+ + V ++ +Q F+LK L + YFLGI+V
Sbjct: 916 SLFFYNKGDLIIFVLIYVDDIIVTSSRQEAVPALLRDLQKEFALKDLGDLHYFLGIEVTK 975
Query: 3230 IGAGILLN*SKYILDLLKKTNMEDYNPCATPPCINQKLYLQDSALL--ENPTLYRITVGA 3403
+ GI+L KY+ DLL++ NM D P +TP ++KL + + L + T YR VGA
Sbjct: 976 VSGGIVLTQDKYVNDLLRRVNMFDCKPVSTPLSTSEKLSINEGDPLGPNDATHYRSVVGA 1035
Query: 3404 LQYLTLTRPDISFIVNKLSQFLHAPTLSHWGACKRVLRYLRDSMTQGLLFQSSPRMNLES 3583
LQYLTLTRPDI+F VNK+ QFLHAPT HW A KR+LRYL+ GL S M + +
Sbjct: 1036 LQYLTLTRPDIAFPVNKVCQFLHAPTTHHWAAVKRILRYLKQCTRLGLKLSKSRSMLVSA 1095
Query: 3584 FADADWASSMDDRRSTSGYCAFLGPNIIAW 3673
++DADWA S+DDRRST G+ FLG N+++W
Sbjct: 1096 YSDADWAGSLDDRRSTGGFAVFLGDNLVSW 1125
Score = 90.5 bits (223), Expect(2) = e-119
Identities = 43/88 (48%), Positives = 63/88 (71%)
Frame = +1
Query: 3682 KKQSVVARSSTETEYHSLASVTTELIWIKSFFAELGLAILPRSVI*CDNISAISLASNPG 3861
+KQ+ V+RSSTE+EY +LA+ T E++W+++ AEL + + + CDN+ A L++NP
Sbjct: 1128 RKQATVSRSSTESEYKALANATAEIMWVQTLLAELQVESPSMAKLWCDNLGAKYLSANPV 1187
Query: 3862 FHARTKHIEVDVHFIREK*LLKTLKFVF 3945
FHARTKHIEVD HF+RE+ K L+ F
Sbjct: 1188 FHARTKHIEVDYHFVRERVSRKLLEIDF 1215
Score = 164 bits (416), Expect = 2e-37
Identities = 71/127 (55%), Positives = 97/127 (76%), Gaps = 1/127 (0%)
Frame = +2
Query: 1769 PYTHQQNGKPKRKHQHIVNVGLSFLAHSNIPYCFWWDAFVSAIFTINRRPTSTLNHLSPF 1948
P+THQQNG +RKH+HIV +GL+ LA+S++P FW +AF SA++ INR P+ L + +P
Sbjct: 405 PHTHQQNGSAERKHRHIVEMGLALLAYSSMPLKFWDEAFTSAVYLINRTPSRLLKYATPL 464
Query: 1949 QKLFGSIPDYNFLKSFGCACYPYLRLYNQSKLQFRSTKCVFLGYSPAHKGYRCLSPS-GK 2125
++LF PDYN L+ FGCAC+P+LR YN KLQFRS +C FLGYSP HKG++CL PS G+
Sbjct: 465 ERLFKQTPDYNLLRVFGCACWPHLRPYNARKLQFRSKQCTFLGYSPLHKGFKCLDPSTGR 524
Query: 2126 IYVARTV 2146
+Y++ V
Sbjct: 525 VYISHDV 531
Score = 79.3 bits (194), Expect = 4e-11
Identities = 42/134 (31%), Positives = 73/134 (54%), Gaps = 11/134 (8%)
Frame = +1
Query: 4 WRLQILSTVDAHGFEGFLFGSVPIP------PKLVDGE-----VNLEYTLWIRRDQLMFS 150
W+ Q+L++V EG L G+ P P +G+ N Y W+ DQ +
Sbjct: 24 WKAQVLASVRGARLEGHLTGTTAAPAITISVPGEKEGDKATRVANPAYDEWVATDQQILG 83
Query: 151 WIIASISESMLGYITRCTTSSDLWSVLETAFRSQPRARVQHLKAQLHSSKKGDLSISDYI 330
+++++S +L + C T++ WS+LE + S RAR + + L ++KKGDLSI++Y+
Sbjct: 84 LLLSTLSRDVLAQVATCGTAATAWSMLEEMYTSMTRARFINTRIALSNTKKGDLSITEYV 143
Query: 331 LHMQGITDNIHAAG 372
M+ + D++ AAG
Sbjct: 144 AKMRALGDDMTAAG 157