BLASTX nr result
ID: Rehmannia27_contig00034921
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia27_contig00034921
(4769 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|KYP65734.1| Retrovirus-related Pol polyprotein from transposo... 826 0.0
gb|KYP34298.1| Retrovirus-related Pol polyprotein from transposo... 823 0.0
gb|KYP42564.1| Retrovirus-related Pol polyprotein from transposo... 830 0.0
gb|KYP61022.1| Retrovirus-related Pol polyprotein from transposo... 825 0.0
gb|KYP55668.1| Retrovirus-related Pol polyprotein from transposo... 798 0.0
gb|KYP34293.1| Retrovirus-related Pol polyprotein from transposo... 806 0.0
gb|KYP43110.1| Retrovirus-related Pol polyprotein from transposo... 799 0.0
gb|KHN01991.1| Retrovirus-related Pol polyprotein from transposo... 798 0.0
gb|KYP68426.1| Retrovirus-related Pol polyprotein from transposo... 801 0.0
gb|KYP70921.1| Retrovirus-related Pol polyprotein from transposo... 794 0.0
emb|CAN73272.1| hypothetical protein VITISV_013115 [Vitis vinifera] 786 0.0
gb|KYP64985.1| Retrovirus-related Pol polyprotein from transposo... 792 0.0
emb|CAN82526.1| hypothetical protein VITISV_028058 [Vitis vinifera] 782 0.0
gb|KYP39497.1| Retrovirus-related Pol polyprotein from transposo... 792 0.0
dbj|BAB10503.1| retroelement pol polyprotein-like [Arabidopsis t... 761 0.0
gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsi... 735 0.0
gb|KYP40677.1| Retrovirus-related Pol polyprotein from transposo... 689 0.0
ref|XP_012486681.1| PREDICTED: LOW QUALITY PROTEIN: retrovirus-r... 623 0.0
gb|KYP38774.1| Retrovirus-related Pol polyprotein from transposo... 589 0.0
gb|KYP61299.1| Retrovirus-related Pol polyprotein from transposo... 575 0.0
>gb|KYP65734.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1013
Score = 826 bits (2133), Expect = 0.0
Identities = 438/979 (44%), Positives = 596/979 (60%), Gaps = 18/979 (1%)
Frame = +2
Query: 11 TDKVVAVGKAQGRLYILHPKSSVQSSFPLIXXXXXXXXXXXXXXELLNWHVKLGHPSISV 190
T K++ K Q LY++ S+ +S + + + WH +LGH S S
Sbjct: 44 TKKMIGTAKYQHGLYVIIRDSATRSQ---LTQPFVGNTISKDSSDSVLWHHRLGHLSNST 100
Query: 191 LEHISCLKPFCTAANKKAIEACDVCHRSKQHRLSFPVSTSRATECFELIHVDVWGPFSHG 370
I+ P + + CD+CH +KQ RL +S +++ EL+H D+WGP+S
Sbjct: 101 HRIIASQFPIVSYQHHDV--PCDICHFAKQKRLPHFISNTKSASVIELLHADIWGPYSIP 158
Query: 371 YTSHNPYMLTVVDDYSRATWTYFLAHKSQVTQTLESFFCMVKTQFDKKVREVRSDNGGEF 550
+ Y LT+VDD+SR TW + KS+ Q L +F ++TQF K++ +R+DNG EF
Sbjct: 159 SVFGHKYFLTLVDDFSRFTWIVMMKSKSETRQHLTNFISYIETQFQTKLKCLRTDNGSEF 218
Query: 551 VNHSLQQLFVSLGILHQRSCVYTPQQNGVVERKHRTLLNLGRALMFQSGLPIKFWIYALM 730
+ H L F+S GI+HQ SCV TPQQNGVVERKH+ +LN RAL FQ+ LP FW +A+
Sbjct: 219 LMHDL---FLSKGIIHQGSCVETPQQNGVVERKHQHILNTARALYFQASLPKNFWNFAIQ 275
Query: 731 YATYIVNRLPSVVLGWETPYELLFGKAPAYDTLKPFGCLVYAANTSPHKHKFAARSIKCV 910
+A +++NR+PS +L +TPY+ L + P L+ FGCL YA+ H+ KF R+ K V
Sbjct: 276 HAVHLINRIPSPLLDNKTPYQALHQRPPILVHLRSFGCLAYASTLQAHRTKFQPRAKKSV 335
Query: 911 FMGFHQGTKGYRLYDLDTNQFLISRDVHFCDHFFPFLQXXXXXXXXXXXXXXXXXXXXXX 1090
+G+ +G KGY LYDL +++F +SR+V F + FPF
Sbjct: 336 LLGYKEGVKGYLLYDLHSHEFFMSRNVFFHEFTFPFHTPSQTSLTQPSPTPITIQTPISS 395
Query: 1091 XXXXXXXXXXXIT------------PLSPTLLP-RRSSRVVQPPVWMKDYVSNSCSILVX 1231
T PLSP P R S+R+ QPP ++KDY CS+L
Sbjct: 396 PYDLDNHVPPSPTSSTSIPPEQPHQPLSPAPAPSRHSTRMRQPPSYLKDY---HCSLLAP 452
Query: 1232 XXXXXXXXISLAGAHYPIPTFPDVTSPSLSAGYMAFLANISGIHEPHHYSEACKDINWID 1411
S +G P +T S Y F ++S EPH Y++A K WI
Sbjct: 453 TGRIN----SFSGISTPHSISSTLTYDFCSPSYKQFCLSVSTNFEPHTYTQASKYDCWIM 508
Query: 1412 AMNKELEALEKNATWDLTFLPDGKKAIGCKWVYKVKLHPDGSIDRYKARLVAKGYHQVYG 1591
AM EL AL+ N TW + LP GK+ IGCKWVYK+K DGSI+RYKARLVAKGY Q G
Sbjct: 509 AMKTELAALDMNQTWSIVDLPSGKRPIGCKWVYKIKYLSDGSIERYKARLVAKGYSQTEG 568
Query: 1592 LDYLDSFSPVAKLVTVRMFIAVAIYKGWDIQQLDINNAFLHGFLDEEIYMVPPDGYH--- 1762
LDYLD++SPVAKL TVR+ +A+ KGW ++QLD+NNAFLHG L EE+YM P G
Sbjct: 569 LDYLDTYSPVAKLTTVRVLLALTAIKGWFLEQLDVNNAFLHGDLHEEVYMTLPPGLSVPS 628
Query: 1763 --KAAPGQVCRLKRSLYGLKQASRQWNVELCKKLIEFGLTQSQNDHCLFFKKTDTSYLAL 1936
AP +VC+L +S+YGLKQASRQW +L LI G + S DH LF K + + + AL
Sbjct: 629 SSNTAP-KVCKLHKSIYGLKQASRQWYSKLSSALISMGYSPSTADHSLFIKSSSSHFTAL 687
Query: 1937 LIYVDDVLITGSAQADISALKHYLDKMFTIKDMGHAKYFLGLEIARGSDGVYLNQRKYIL 2116
L+YVDD+++ G+ + +I +K L K F IKD+G+ +YFLGLEIAR + G+ LNQRKY L
Sbjct: 688 LVYVDDIILAGNDKPEIDFIKAQLHKCFKIKDLGNLRYFLGLEIARSNKGILLNQRKYTL 747
Query: 2117 DLLHDTGLSDCKPAKLPFPSGLKLTGKAGEPLQHPDAYRRLVGRLLYLNLTRADITYCVQ 2296
++L D G KP+ PF LKL G P AYRRL+GRLLYL TR DI+Y VQ
Sbjct: 748 EILEDVGFLAAKPSSTPFNPSLKLHSDHGSPYNDETAYRRLIGRLLYLTTTRPDISYVVQ 807
Query: 2297 QLSQFVNDPYSSHWEAAVHVLKYLKGCPSKGLFYSSHGRFELMAYSDADWASCPDTRRSL 2476
QLSQFV+ P H++AA +L+YLKG +GLFYSS +L A++D+DWASC +R+S+
Sbjct: 808 QLSQFVSKPLDIHYQAATRILRYLKGSHGRGLFYSSSASLKLSAFADSDWASCSISRKSI 867
Query: 2477 TGYCVFLGSSLISWKTKKQCTVSKSSAEAEYRALSTTVCELQWLAHLALDFCIQVPTPIS 2656
TG+CVFLGSSLISW++KKQ T+S+SS+EAEYRAL++ CELQWL +L D + P S
Sbjct: 868 TGFCVFLGSSLISWRSKKQSTISRSSSEAEYRALASLTCELQWLHYLFNDLKTSLNFPTS 927
Query: 2657 LWCDNQAALHIVANPVFHERTKHLEIDCHIVRNQFKAGFILPQKVSSSLQLADIFTKSLG 2836
++CDN++A+++ NP FHERTKH+EIDCH++R + ++ + V SS QLAD FTK L
Sbjct: 928 VFCDNKSAIYLAHNPTFHERTKHIEIDCHVIREKIQSRLLHLLPVPSSSQLADAFTKPLH 987
Query: 2837 QQVFDGLLVKLGMKDLHNS 2893
F+ + KLG+ D+H+S
Sbjct: 988 ATSFNSFVSKLGLYDVHSS 1006
>gb|KYP34298.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1002
Score = 823 bits (2125), Expect = 0.0
Identities = 434/926 (46%), Positives = 579/926 (62%), Gaps = 13/926 (1%)
Frame = +2
Query: 155 WHVKLGHPSISVLEHISCLKPFCTAANKKAIEACDVCHRSKQHRLSFPVSTSRATECFEL 334
WH++LGH + L+ + PF KK + C+VC+ +KQ +L F S ++A E F+L
Sbjct: 92 WHIRLGHLAHEKLQAMKSNFPFIDC--KKNKDPCNVCYLAKQRQLPFSHSVTKADEIFDL 149
Query: 335 IHVDVWGPFSHGYTSHNPYMLTVVDDYSRATWTYFLAHKSQVTQTLESFFCMVKTQFDKK 514
+HVD+WGP + + + LT+VDD SR TW YF+ HKS+V L SF +++ QF KK
Sbjct: 150 LHVDIWGPTTPASIFGHKFFLTIVDDKSRHTWVYFMKHKSEVADHLSSFITLIENQFGKK 209
Query: 515 VREVRSDNGGEFVNHSLQQLFVSLGILHQRSCVYTPQQNGVVERKHRTLLNLGRALMFQS 694
V+ VRSDNG EF+ L+ + GILHQ SCV TPQQNG+VERKH+ ++ + RAL+ QS
Sbjct: 210 VKCVRSDNGPEFL---LKNFYHEKGILHQTSCVETPQQNGIVERKHQHIMTVARALVMQS 266
Query: 695 GLPIKFWIYALMYATYIVNRLPSVVLGWETPYELLFGKAPAYDTLKPFGCLVYAANTSPH 874
LP FW YA+ +A +++NR PS L + PYE+++ P +K FGCL YA +
Sbjct: 267 NLPKSFWFYAVSHAVFLINRQPSSFLENKIPYEIIYNALPDLAGIKVFGCLAYATTLHHN 326
Query: 875 KHKFAARSIKCVFMGFHQGTKGYRLYDLDTNQFLISRDVHFCDHFFPFLQXXXXXXXXXX 1054
+ KF R +CVF+GF KG LYDL++ + +SR V + +H FPFL
Sbjct: 327 RKKFDPRGRRCVFLGFKPQVKGSILYDLNSRETFLSRHVEYFEHIFPFLPTSPLDLTQTI 386
Query: 1055 XXXXXXXXXXXXXXXXXXXXXXXITPLSPTLLPRRSS-RVVQPPVWMK---------DYV 1204
TPLS P S VV PP +++ Y+
Sbjct: 387 SLPRHQPPLPIDTDP---------TPLSTNTTPTSSPVSVVPPPPFVRKSTRPRKLPSYL 437
Query: 1205 SNSCSILVXXXXXXXXXISLAGAHYPIPTFPDVTSPSLSAGYMAFLANISGIHEPHHYSE 1384
+ L+ L H I + +LS AF +IS I EP+ Y E
Sbjct: 438 HDYHHTLLTTHNSPTISQPLYSIHNHI------SYSNLSPSQKAFSLSISSIKEPNSYVE 491
Query: 1385 ACKDINWIDAMNKELEALEKNATWDLTFLPDGKKAIGCKWVYKVKLHPDGSIDRYKARLV 1564
A +D +W A+ EL ALEKN TW LT LP K+ +GCKWV+K+K + DG+I+R+KARLV
Sbjct: 492 AIQDESWKTAIQTELTALEKNNTWILTPLPPNKQVVGCKWVFKLKFNSDGTIERHKARLV 551
Query: 1565 AKGYHQVYGLDYLDSFSPVAKLVTVRMFIAVAIYKGWDIQQLDINNAFLHGFLDEEIYMV 1744
AKGY Q LDYLD+FSPV K+ TVR +AVA K W I QLD+N FLHG L EE+YM
Sbjct: 552 AKGYTQTETLDYLDTFSPVVKMTTVRTLLAVATAKNWHIHQLDVNTTFLHGDLHEEVYMT 611
Query: 1745 PPDGYHKAAPGQ---VCRLKRSLYGLKQASRQWNVELCKKLIEFGLTQSQNDHCLFFKKT 1915
PP G +P Q VC+L +SLYGLKQASRQWN +L LI+ G QS D+ LF K+
Sbjct: 612 PPPGL-TVSPHQSNCVCKLVKSLYGLKQASRQWNAKLTSVLIDSGFKQSMADYSLFTKQF 670
Query: 1916 DTSYLALLIYVDDVLITGSAQADISALKHYLDKMFTIKDMGHAKYFLGLEIARGSDGVYL 2095
+ A+L+YVDD+++ G+ +I+ +K LD+ FTIKD+G KYFLG+E+AR S G+ L
Sbjct: 671 GAKFTAILVYVDDLVLAGNDPTEINYIKSLLDQKFTIKDLGQLKYFLGMEVARSSTGIAL 730
Query: 2096 NQRKYILDLLHDTGLSDCKPAKLPFPSGLKLTGKAGEPLQHPDAYRRLVGRLLYLNLTRA 2275
QRKY LDL+ DTGL KP K P +KL G PL P YRRL+GRL+YL TRA
Sbjct: 731 YQRKYALDLIEDTGLLASKPCKSPMDHSVKLHKTVGTPLTDPTQYRRLLGRLIYLTNTRA 790
Query: 2276 DITYCVQQLSQFVNDPYSSHWEAAVHVLKYLKGCPSKGLFYSSHGRFELMAYSDADWASC 2455
DI++ V LSQF++ P H++AA+ +LKY+K P KGLF+ S L YSD+DWASC
Sbjct: 791 DISFSVNHLSQFMDQPTDVHYQAALRILKYVKNAPGKGLFFPSSSDLTLKGYSDSDWASC 850
Query: 2456 PDTRRSLTGYCVFLGSSLISWKTKKQCTVSKSSAEAEYRALSTTVCELQWLAHLALDFCI 2635
DTRRS+TG+ FLG +LISWK+KKQ TVSKSSAEAEYRAL+ + CE QWL++L DF +
Sbjct: 851 SDTRRSVTGFSFFLGPALISWKSKKQATVSKSSAEAEYRALAQSTCEAQWLSYLLHDFGL 910
Query: 2636 QVPTPISLWCDNQAALHIVANPVFHERTKHLEIDCHIVRNQFKAGFILPQKVSSSLQLAD 2815
PI L+CDNQ+ALHI +NPVFHERTK++E+DCHIVR + + G I +S++ QLAD
Sbjct: 911 HSFHPIVLFCDNQSALHIASNPVFHERTKNIELDCHIVREKLQVGLIHLLPISTADQLAD 970
Query: 2816 IFTKSLGQQVFDGLLVKLGMKDLHNS 2893
+FTK+L + F+ ++ KLGM D+H+S
Sbjct: 971 VFTKALSLRPFEQIIFKLGMFDIHSS 996
>gb|KYP42564.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1427
Score = 830 bits (2145), Expect = 0.0
Identities = 445/987 (45%), Positives = 596/987 (60%), Gaps = 24/987 (2%)
Frame = +2
Query: 2 DLKTDKVVAVGKAQGRLYILHPKSSVQSSFPLIXXXXXXXXXXXXXXELLNWHVKLGHPS 181
DL + K + + + + LYIL S S WH +LGHPS
Sbjct: 440 DLTSKKTIGLAEVKNHLYILQRPSKDNSISACKSNSVLNAQPKGTTSSFDLWHYRLGHPS 499
Query: 182 ISVLEHISCLKPFCTAANKKAIEACDVCHRSKQHRLSFPVSTSRATECFELIHVDVWGPF 361
VL+ + L P+ T NK CD CH KQ RL FP ST+++ CF+L+H+D+WGP
Sbjct: 500 HVVLQTVKRLFPYVTY-NKNI--TCDYCHFGKQARLPFPTSTTKSLSCFDLVHMDIWGPL 556
Query: 362 SHGYTSHNPYMLTVVDDYSRATWTYFLAHKSQVTQTLESFFCMVKTQFDKKVREVRSDNG 541
+ + Y LT+VDDYSR TW YF+ K + +++F V+TQF K ++ +RSDNG
Sbjct: 557 AIPSIHGHKYFLTIVDDYSRHTWIYFMKSKGETRNLIQNFISYVQTQFTKHIKVLRSDNG 616
Query: 542 GEFVNHSLQQLFVSLGILHQRSCVYTPQQNGVVERKHRTLLNLGRALMFQSGLPIKFWIY 721
EF ++ QL+ + GI+HQ SCV TPQQN VVERKHR +LN+ R L+F S +P FW Y
Sbjct: 617 VEF---AMDQLYATYGIVHQTSCVETPQQNSVVERKHRHILNITRTLLFHSNVPKSFWCY 673
Query: 722 ALMYATYIVNRLPSVVLGWETPYELLFGKAPAYDTLKPFGCLVYAANTSPHKHKFAARSI 901
A+ +A +++NRLPS VL +PY++L+ K P LK FG L YA+ + K A ++
Sbjct: 674 AVGHAIHLINRLPSPVLNNSSPYQMLYDKPPTLLDLKVFGSLCYASTLVQGRSKLAPKAT 733
Query: 902 KCVFMGFHQGTKGYRLYDLDTNQFLISRDVHFCDHF---------------------FPF 1018
K V++G QGTKG+ + DL T +SR+V F +H F F
Sbjct: 734 KGVYLGVKQGTKGFLVLDLLTRSIFVSRNVVFYEHIFPFFEKGSTVITNSQQQNDACFDF 793
Query: 1019 LQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITPLSPTLLP---RRSSRVVQPPVW 1189
L S T P R+S+R P +
Sbjct: 794 LYLDSSSHPVTTIDNSSLLDIDSAHYENDLNDIDESAHPSETSSPSQLRKSTRHKCSPAY 853
Query: 1190 MKDYVSNSCSILVXXXXXXXXXISLAGAHYPIPTFPDVTSPSLSAGYMAFLANISGIHEP 1369
+KDY C++L+ I YP+ T ++ SLSA Y ++ +I+ EP
Sbjct: 854 LKDY---HCNLLIGVPPPEDKHI-----RYPLNTV--LSYDSLSASYSRYVLSITTHVEP 903
Query: 1370 HHYSEACKDINWIDAMNKELEALEKNATWDLTFLPDGKKAIGCKWVYKVKLHPDGSIDRY 1549
H +++A K+ W++AM EL+ALE N TW + LP GK IG KWVYK+K DGSI+RY
Sbjct: 904 HTFNQAVKNKVWVEAMQAELDALEHNKTWTIMPLPPGKTPIGSKWVYKIKYKSDGSIERY 963
Query: 1550 KARLVAKGYHQVYGLDYLDSFSPVAKLVTVRMFIAVAIYKGWDIQQLDINNAFLHGFLDE 1729
KARLV KGY Q+ GLDY D+F+PVAKL TVRM +A+A + W++ QLDINNAFLHG L E
Sbjct: 964 KARLVVKGYTQIQGLDYFDTFAPVAKLSTVRMLLAIASCQHWELHQLDINNAFLHGDLLE 1023
Query: 1730 EIYMVPPDGYHKAAPGQVCRLKRSLYGLKQASRQWNVELCKKLIEFGLTQSQNDHCLFFK 1909
++YM P G + P VC+L +SLYGLKQASRQW +L L+ QSQ+DH LF K
Sbjct: 1024 DVYMEIPQGLNIDKPNHVCKLNKSLYGLKQASRQWFAKLSSFLLSLHYKQSQHDHSLFTK 1083
Query: 1910 KTDTSYLALLIYVDDVLITGSAQADISALKHYLDKMFTIKDMGHAKYFLGLEIARGSDGV 2089
T + +LIYVDD++I G+ +I+ +K LD F IKD+G +YFLGLEIAR G+
Sbjct: 1084 HHGTHFTVILIYVDDLIIAGTDSEEINHIKQSLDVKFKIKDLGPLRYFLGLEIARSHLGI 1143
Query: 2090 YLNQRKYILDLLHDTGLSDCKPAKLPFPSGLKLTGKAGEPLQHPDAYRRLVGRLLYLNLT 2269
L+QRKY LDLL +T KP P G +L+ P + P YRRL+G+LLYL T
Sbjct: 1144 SLSQRKYTLDLLDETSFLAGKPVLTPIIKGTRLSHTTDSPYEDPAGYRRLIGKLLYLITT 1203
Query: 2270 RADITYCVQQLSQFVNDPYSSHWEAAVHVLKYLKGCPSKGLFYSSHGRFELMAYSDADWA 2449
R DI+Y VQQLSQF++ P SH++AA+ VL+YLKG P +GLFY + +L A+SD+DWA
Sbjct: 1204 RPDISYSVQQLSQFLSCPQQSHYQAAIRVLRYLKGNPGQGLFYPADSPLQLKAFSDSDWA 1263
Query: 2450 SCPDTRRSLTGYCVFLGSSLISWKTKKQCTVSKSSAEAEYRALSTTVCELQWLAHLALDF 2629
SCPDTRRSL+GY +FLG+SLISWK KKQ T+S+SS+EAEYRAL+ T CE+QWL +L DF
Sbjct: 1264 SCPDTRRSLSGYSIFLGNSLISWKCKKQSTISRSSSEAEYRALAATACEIQWLTYLLQDF 1323
Query: 2630 CIQVPTPISLWCDNQAALHIVANPVFHERTKHLEIDCHIVRNQFKAGFILPQKVSSSLQL 2809
+ TP L+CDNQ+A HI +N VFHERTKH+EIDCH+VR + +AG ++SS QL
Sbjct: 1324 SVPFTTPALLYCDNQSARHIASNAVFHERTKHIEIDCHLVREKLQAGLFHLLPIASSHQL 1383
Query: 2810 ADIFTKSLGQQVFDGLLVKLGMKDLHN 2890
ADI TK L F LL KLG+ ++++
Sbjct: 1384 ADILTKPLDPSPFQYLLSKLGVINIYS 1410
Score = 187 bits (474), Expect = 4e-44
Identities = 129/467 (27%), Positives = 214/467 (45%), Gaps = 12/467 (2%)
Frame = +1
Query: 3400 ALGAKTKLGFVDGTIAMPKADTAEYDQWRRVDLMVTSWILNTIAKDIVDAFLYVKSAREL 3579
AL +K K FVDG+I P+ +D W R + M+ SWI ++++ I + +Y+ +A+ L
Sbjct: 4 ALLSKNKFKFVDGSIQEPQKSNELHDAWVRCNTMILSWITKSVSEQIAQSVIYINNAQRL 63
Query: 3580 WEDIAQRFGECNGTVLYQLQKDIVNLTQGLNSVAVYFTKLKKLWDEYGSLAPAFTCKCGN 3759
WED+ +RF + + L ++I ++ Q +++ YFT+LK LW+E SL P TC C +
Sbjct: 64 WEDLKERFSKGDYFRFSDLLQEIHSIKQADRTISSYFTELKILWEELESLRPTPTCTC-D 122
Query: 3760 NKASVDLENITK-------LNQFLMGLNDSYDHIRSQILIMDPLPTVNKAYSMVQRVERQ 3918
+ S DL K + FL GLND Y+ ++SQILIMDPLP +NK +S+V + ERQ
Sbjct: 123 VRCSCDLSTKVKDYKDTEYVICFLKGLNDQYNTVKSQILIMDPLPVINKVFSLVLQQERQ 182
Query: 3919 RSVSINVGEGTDGVALMTRNMSGS---PASVGRGXXXXXXXXXXXXXXXXXXXXXXXXXX 4089
+ N D SG +S GRG
Sbjct: 183 Q----NTPNLADSRIFSLNTQSGGNWRSSSNGRG------------GSSRGRGRTGGRGS 226
Query: 4090 XXXAKLTCEHCRAPGHEMSECFKLHGYPDWFKDLKEQRRRNSVNMVGDSGHLPGEVAQTQ 4269
A C C H + C+ HG+P FK K++ S+N + S P A
Sbjct: 227 FTNAGKVCTFCGKENHTIDSCYFKHGFPPNFK-FKDKGNTTSINTI--SSKAPSTQASEI 283
Query: 4270 PKKDSAGDMAALIQQEIAKYLANTGGVD-KSGGNGVNMNYAHFVDYAGTDMIHDNYCALS 4446
+K + + ++ + +S + +N V T+ + + +
Sbjct: 284 SRKQNKESTSNFTHEDYDHLIDMLKRAKLQSPEHSIN----QLVHQTTTESVSSSNLQQN 339
Query: 4447 TFDESSRH-NWIIDTGASKHMCYNEQLLTDLHPVHTKTNIYLPDGSTKHVEYTGKAHITX 4623
H +WI+DTGA+ H+C + T HP+ ++ LP+G+T +++G +
Sbjct: 340 QPGNPLEHTDWILDTGATDHVCNSLYFFTKYHPI-DPVHVKLPNGNTSTAQFSGTIIFSE 398
Query: 4624 XXXXXXXXXXPSFSYNLLSVAQLTESSNLKFIFFPTHCVLQDLKTDK 4764
P+F N++SV ++ S + + +F C++QDL + K
Sbjct: 399 KFFLNDVLYIPNFHLNIISVQKIAASLDYELMFNKNSCIIQDLTSKK 445
>gb|KYP61022.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1316
Score = 825 bits (2130), Expect = 0.0
Identities = 436/915 (47%), Positives = 589/915 (64%), Gaps = 3/915 (0%)
Frame = +2
Query: 155 WHVKLGHPSISVLEHISCLKPFCTAANKKAIEACDVCHRSKQHRLSFPVSTSRATECFEL 334
WH ++GH S L+ PF + + C+ CH +KQ +L FP+S S A++ F+L
Sbjct: 416 WHFRMGHLSHERLQSF----PFLSVDTSFS---CNTCHHAKQKKLPFPLSHSYASQPFDL 468
Query: 335 IHVDVWGPFSHGYTSHNPYMLTVVDDYSRATWTYFLAHKSQVTQTLESFFCMVKTQFDKK 514
+H+D+WGP S + Y LT+VDD++R TW + + +KS+ Q + +F V+TQFDK
Sbjct: 469 LHMDIWGPCSVTSMHGHKYFLTIVDDHTRFTWLFLMQNKSETRQHIINFINQVETQFDKH 528
Query: 515 VREVRSDNGGEFVNHSLQQLFVSLGILHQRSCVYTPQQNGVVERKHRTLLNLGRALMFQS 694
V+ +R+DNG EF S+ Q F S GI+HQ +CV TPQQNG+VERKH+ LLN+ R+L+FQ+
Sbjct: 529 VKVIRTDNGLEF---SMTQYFSSKGIIHQTTCVETPQQNGIVERKHQHLLNVTRSLLFQA 585
Query: 695 GLPIKFWIYALMYATYIVNRLPSVVLGWETPYELLFGKAPAYDTLKPFGCLVYAANTSPH 874
LP FW +ALM+AT+++N +P+ L +P+E L+G L FGCL Y++ + H
Sbjct: 586 NLPSIFWCFALMHATFLINCIPTPFLHNISPFEKLYGHPCDISILCVFGCLCYSSTITSH 645
Query: 875 KHKFAARSIKCVFMGFHQGTKGYRLYDLDTNQFLISRDVHFC-DHFFPFLQXXXXXXXXX 1051
+ K R+ C+F+GF TKGY L++L T+ L+SR+V F DHF F +
Sbjct: 646 RTKLDPRAHPCIFLGFKPHTKGYLLFNLHTHGLLVSRNVLFHEDHFPSFTKPHSPSFSSP 705
Query: 1052 XXXXXXXXXXXXXXXXXXXXXXXXITPLSPTLLP--RRSSRVVQPPVWMKDYVSNSCSIL 1225
T + P RRS+R +PP +++D+ S
Sbjct: 706 VPIHYNYVDYPTFPSSSIVESSDPPTSDQHSSPPPLRRSTRPRRPPTYLQDFHGAFTSTS 765
Query: 1226 VXXXXXXXXXISLAGAHYPIPTFPDVTSPSLSAGYMAFLANISGIHEPHHYSEACKDINW 1405
S G +P+ +F ++ LS + ++ +IS + EP +++EA K +W
Sbjct: 766 TAH--------SSTGIRHPLHSF--LSYDLLSPSFHHYVFSISSVTEPKNFAEASKSDSW 815
Query: 1406 IDAMNKELEALEKNATWDLTFLPDGKKAIGCKWVYKVKLHPDGSIDRYKARLVAKGYHQV 1585
+ AM++E+ ALE N TW LT LP K AIGC+WVYKVK DGSIDRYKARLVAKGY Q+
Sbjct: 816 LKAMHEEIFALEANNTWVLTTLPPHKTAIGCRWVYKVKHKADGSIDRYKARLVAKGYTQM 875
Query: 1586 YGLDYLDSFSPVAKLVTVRMFIAVAIYKGWDIQQLDINNAFLHGFLDEEIYMVPPDGYHK 1765
GLD+ D+FSPVAKL TVR+ +++A W ++QLD+NNAFLHG L+EE+YM P G
Sbjct: 876 EGLDFFDTFSPVAKLTTVRLLLSLAAINNWHLKQLDVNNAFLHGDLNEEVYMQLPPGLTP 935
Query: 1766 AAPGQVCRLKRSLYGLKQASRQWNVELCKKLIEFGLTQSQNDHCLFFKKTDTSYLALLIY 1945
+ PGQVCRL+RSLYGLKQASRQW L LI+ G S +DH LF K + + A+LIY
Sbjct: 936 SFPGQVCRLQRSLYGLKQASRQWYARLSSFLIQHGYVPSPSDHSLFLKCSPATTTAILIY 995
Query: 1946 VDDVLITGSAQADISALKHYLDKMFTIKDMGHAKYFLGLEIARGSDGVYLNQRKYILDLL 2125
VDD+++ G+ +I L L F IKD+G+ KYFLGLE+AR G++L QRKYILDLL
Sbjct: 996 VDDIVLAGNDLTEIHHLTSLLHTTFQIKDLGNLKYFLGLEVARNHTGIHLCQRKYILDLL 1055
Query: 2126 HDTGLSDCKPAKLPFPSGLKLTGKAGEPLQHPDAYRRLVGRLLYLNLTRADITYCVQQLS 2305
DTG+ KP P + L+ +G PL AYRRLVGRL+YL TR DITY VQQLS
Sbjct: 1056 SDTGMLASKPVSTPMDYSMHLSASSGTPLTDTAAYRRLVGRLIYLTNTRPDITYAVQQLS 1115
Query: 2306 QFVNDPYSSHWEAAVHVLKYLKGCPSKGLFYSSHGRFELMAYSDADWASCPDTRRSLTGY 2485
QFV++P ++H +A +L+YLKG P G+F S + +L A+SD+DWA CPDTRRS+TG+
Sbjct: 1116 QFVSNPTTAHRQALFRILRYLKGTPGSGIFLSVNSSVQLRAFSDSDWAGCPDTRRSITGF 1175
Query: 2486 CVFLGSSLISWKTKKQCTVSKSSAEAEYRALSTTVCELQWLAHLALDFCIQVPTPISLWC 2665
V+LG SLISWK+KKQ TVS+SS+EAEYRAL+TT CELQWL++L DF I +P L+C
Sbjct: 1176 AVYLGDSLISWKSKKQITVSRSSSEAEYRALATTTCELQWLSYLLKDFHIDPISPSILYC 1235
Query: 2666 DNQAALHIVANPVFHERTKHLEIDCHIVRNQFKAGFILPQKVSSSLQLADIFTKSLGQQV 2845
DNQ+AL I +NPVFHERTKH+EIDCHIVR++ G + VSSS QLADI TK L V
Sbjct: 1236 DNQSALQIASNPVFHERTKHIEIDCHIVRDKVSTGLLKLLPVSSSQQLADILTKPLSPFV 1295
Query: 2846 FDGLLVKLGMKDLHN 2890
F KLGM ++H+
Sbjct: 1296 FRSHCSKLGMLNIHS 1310
Score = 127 bits (319), Expect = 8e-26
Identities = 106/434 (24%), Positives = 179/434 (41%), Gaps = 12/434 (2%)
Frame = +1
Query: 3499 MVTSWILNTIAKDIVDAFLYVKSARELWEDIAQRFGECNGTVLYQLQKDIVNLTQGLNSV 3678
MV SW++++++ I + L++ A ++W+D+ R+ + + + LQ + +L QG SV
Sbjct: 1 MVVSWLVHSVSPSIRQSILWMDQADDIWKDLKTRYSQGDLLRVSDLQLEASSLKQGDLSV 60
Query: 3679 AVYFTKLKKLWDEYGSLAPAFTCKCGNNKASVDLENITKLN------QFLMGLNDSYDHI 3840
YFTKL+ LWDE + P C C A L I + QFL GLND Y+++
Sbjct: 61 TEYFTKLRILWDELENFRPDPNCTCTIKCACSVLTIIAQRKLEDQAMQFLRGLNDQYNNV 120
Query: 3841 RSQILIMDPLPTVNKAYSMVQRVERQRSVSINVGEGTDGVALMTRNMSGSPASVGRGXXX 4020
+S +L+M+ P ++K +S V + ERQ G + +A + + + S +V
Sbjct: 121 KSHVLLME--PPISKIFSYVVQQERQLL-------GQNFIANVHLDRTSSINAV------ 165
Query: 4021 XXXXXXXXXXXXXXXXXXXXXXXXXXAKLTCEHCRAPGHEMSECFKLHGYPDWFKDLKE- 4197
A TC HC GH + CF+ HG+P +
Sbjct: 166 --------------------------ASPTCTHCNRTGHTDAVCFRKHGFPSTTNRSNKG 199
Query: 4198 --QRRRNSVNMVGDSGHLPGEVAQTQ---PKKDSAGDMAALIQQEIAKYLANTGGVDKSG 4362
R R G +GH Q P D A + + T
Sbjct: 200 SSNRPRRICTHCGKTGHTIEVCYQKHGFPPGSKPLSDKTASVNHTVTGDCKVTESTQSLE 259
Query: 4363 GNGVNMNYAHFVDYAGTDMIHDNYCALSTFDESSRHNWIIDTGASKHMCYNEQLLTDLHP 4542
V ++ A+ST +WI+D+GA+ H+ + + P
Sbjct: 260 SQDVRTSFPIVCS------------AIST-----PSSWILDSGATDHVSSSLSHFSSFSP 302
Query: 4543 VHTKTNIYLPDGSTKHVEYTGKAHITXXXXXXXXXXXPSFSYNLLSVAQLTESSNLKFIF 4722
++ ++ LP G ++G T P+F+YNL+S+++L S + + IF
Sbjct: 303 IN-PIDVKLPTGQHVLATHSGTVKFTNSFYLVDVLYIPAFTYNLISISKLVSSLSCQLIF 361
Query: 4723 FPTHCVLQDLKTDK 4764
C++Q+ T K
Sbjct: 362 DHHSCIIQETNTMK 375
>gb|KYP55668.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1136
Score = 798 bits (2062), Expect = 0.0
Identities = 424/915 (46%), Positives = 572/915 (62%), Gaps = 3/915 (0%)
Frame = +2
Query: 155 WHVKLGHPSISVLEHISCLKPFCTAANKKAIEACDVCHRSKQHRLSFPVSTSRATECFEL 334
WH ++GH S L+ + PF + + C+ CH KQ +LSFP+S S A + F+L
Sbjct: 233 WHFRMGHLSQERLQLMKQSFPFLSVDKSFS---CNTCHHDKQKKLSFPLSHSYALQPFDL 289
Query: 335 IHVDVWGPFSHGYTSHNPYMLTVVDDYSRATWTYFLAHKSQVTQTLESFFCMVKTQFDKK 514
+H+D+WGP + Y L +VDD++R TW + + +KS+ Q + +F V+TQFDK
Sbjct: 290 LHMDIWGPCPVTSMHGHKYFLAIVDDHTRFTWLFLMQNKSETRQHIINFINQVETQFDKN 349
Query: 515 VREVRSDNGGEFVNHSLQQLFVSLGILHQRSCVYTPQQNGVVERKHRTLLNLGRALMFQS 694
V+ +R+DNG EF S+ Q F S GI+HQ +CV TPQQNG+VERKH+ LLN+ R+L+FQ+
Sbjct: 350 VKVIRTDNGLEF---SMTQYFSSKGIIHQTTCVETPQQNGIVERKHQHLLNVTRSLLFQA 406
Query: 695 GLPIKFWIYALMYATYIVNRLPSVVLGWETPYELLFGKAPAYDTLKPFGCLVYAANTSPH 874
LP FW +AL +A +++N +P+ L +P+E L+G L+ FGCL Y++ + H
Sbjct: 407 NLPSIFWCFALKHAAFLINCIPTPFLHNISPFEKLYGHPCDISILRVFGCLCYSSIITSH 466
Query: 875 KHKFAARSIKCVFMGFHQGTKGYRLYDLDTNQFLISRDVHFCDHFFPFLQXXXXXXXXXX 1054
+ K R+ C+F+GF TKGY L +L T+ L+S++V F + FP
Sbjct: 467 RTKLDPRAHPCIFLGFKPHTKGYLLVNLHTHGLLVSQNVIFHEDHFPSFTKPNSPSFSSP 526
Query: 1055 XXXXXXXXXXXXXXXXXXXXXXXITPLSPTLLP---RRSSRVVQPPVWMKDYVSNSCSIL 1225
P P RRS+R +PP +++D+ S
Sbjct: 527 VPIPYNYADYPSFPSSSIVESSEPPPPDQHSSPPPLRRSTRPRRPPTYLQDFHGAFTST- 585
Query: 1226 VXXXXXXXXXISLAGAHYPIPTFPDVTSPSLSAGYMAFLANISGIHEPHHYSEACKDINW 1405
S G +P+ +F ++ LS + ++ +IS + +P ++ EA K +W
Sbjct: 586 --------GPHSSTGIRHPLHSF--ISYDRLSPSFHHYVFSISSVTKPKNFVEASKSDSW 635
Query: 1406 IDAMNKELEALEKNATWDLTFLPDGKKAIGCKWVYKVKLHPDGSIDRYKARLVAKGYHQV 1585
+ AM++E+ ALE N TW LT LP K AIGC+WVYKVK DGSIDRYKARLVAKGY Q+
Sbjct: 636 LKAMHEEISALEANNTWVLTTLPPHKTAIGCRWVYKVKHKADGSIDRYKARLVAKGYTQM 695
Query: 1586 YGLDYLDSFSPVAKLVTVRMFIAVAIYKGWDIQQLDINNAFLHGFLDEEIYMVPPDGYHK 1765
GLD+ D+FSPVAKL TVR+ I++A ++QLD+NN+FLHG L+EE+YM P G
Sbjct: 696 EGLDFFDTFSPVAKLTTVRLLISLAAIHNCHLKQLDVNNSFLHGDLNEEVYMQLPPGITP 755
Query: 1766 AAPGQVCRLKRSLYGLKQASRQWNVELCKKLIEFGLTQSQNDHCLFFKKTDTSYLALLIY 1945
+ PGQVCRL+RSLYGLKQASRQW L LI+ G S +DH LF K + A+LIY
Sbjct: 756 SFPGQVCRLQRSLYGLKQASRQWYARLSSFLIQHGYVPSPSDHSLFLKCSPAITTAILIY 815
Query: 1946 VDDVLITGSAQADISALKHYLDKMFTIKDMGHAKYFLGLEIARGSDGVYLNQRKYILDLL 2125
VDD+++ G+ +I L L F IKD+G+ KYFLGLE+AR G++L QRKY LDLL
Sbjct: 816 VDDIVLAGNDLTEIHHLTSLLHNTFQIKDLGNLKYFLGLEVARNHTGIHLCQRKYTLDLL 875
Query: 2126 HDTGLSDCKPAKLPFPSGLKLTGKAGEPLQHPDAYRRLVGRLLYLNLTRADITYCVQQLS 2305
DTG+ KP P L+ +G P AYRRLVGRL+YL TR I Y VQQLS
Sbjct: 876 SDTGMLASKPVSTPMDYSTHLSASSGTPFTDTAAYRRLVGRLIYLPNTRPAIAYAVQQLS 935
Query: 2306 QFVNDPYSSHWEAAVHVLKYLKGCPSKGLFYSSHGRFELMAYSDADWASCPDTRRSLTGY 2485
QFV++P ++H +A +L YLKG P G+F S + +L A+SD DWA CPDTRRS+TG+
Sbjct: 936 QFVSNPPTAHRQALFRILCYLKGTPGSGIFLSVNSSVQLRAFSDYDWAGCPDTRRSITGF 995
Query: 2486 CVFLGSSLISWKTKKQCTVSKSSAEAEYRALSTTVCELQWLAHLALDFCIQVPTPISLWC 2665
V+LG SLISWK+KKQ TVS+SS+EAEYRAL+TT CELQWL++L DF I + P L+C
Sbjct: 996 AVYLGDSLISWKSKKQITVSRSSSEAEYRALATTTCELQWLSYLLKDFHIDLIRPSILYC 1055
Query: 2666 DNQAALHIVANPVFHERTKHLEIDCHIVRNQFKAGFILPQKVSSSLQLADIFTKSLGQQV 2845
DNQ AL I +NP+FHERTKH+EIDCHIVR++ G + VSSSLQLADI TK L V
Sbjct: 1056 DNQFALQIASNPIFHERTKHIEIDCHIVRDKVSTGLLKLLPVSSSLQLADILTKPLSPFV 1115
Query: 2846 FDGLLVKLGMKDLHN 2890
F KLGM ++H+
Sbjct: 1116 FHSHYSKLGMLNIHS 1130
>gb|KYP34293.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1376
Score = 806 bits (2083), Expect = 0.0
Identities = 423/939 (45%), Positives = 589/939 (62%), Gaps = 27/939 (2%)
Frame = +2
Query: 155 WHVKLGHPSISVLEHISCLKPFCTAANKKAIEACDVCHRSKQHRLSFPVSTSRATECFEL 334
WH +LGH S + L ++ L P C NK C++CH +KQ +LSF S S A+ F L
Sbjct: 447 WHFRLGHLSNTRLHNMQQLYP-CLTINKDF--TCNICHYAKQRKLSFSSSHSTASRPFSL 503
Query: 335 IHVDVWGPFSHGYTSH-NPYMLTVVDDYSRATWTYFLAHKSQVTQTLESFFCMVKTQFDK 511
+H+D+WGP+S + H + + T+VDD + TW + + +KS+ + +F +++ QF+
Sbjct: 504 LHMDIWGPYSCISSIHGHKFFFTIVDDNTHFTWIFLMINKSETRMHISNFINLIENQFNT 563
Query: 512 KVREVRSDNGGEFVNHSLQQLFVSLGILHQRSCVYTPQQNGVVERKHRTLLNLGRALMFQ 691
+++ +++DNG EF+ +Q F S GI+HQ +C+ TPQQNGVVERKH+ LLN+ AL+F
Sbjct: 564 RIQTIQTDNGAEFL---MQNFFNSKGIVHQTTCIETPQQNGVVERKHQHLLNVTHALLFH 620
Query: 692 SGLPIKFWIYALMYATYIVNRLPSVVLGWETPYELLFGKAPAYDTLKPFGCLVYAANTSP 871
S LP FW YAL++ATY++NR+ + +L +TP++ L+G+ L+ FGCL Y + ++
Sbjct: 621 SKLPYCFWSYALLHATYLINRITTPLLDNKTPFQKLYGQTCDITELRVFGCLCYVSTSTA 680
Query: 872 HKHKFAARSIKCVFMGFHQGTKGYRLYDLDTNQFLISRDVHFCDHFFPFLQ--------- 1024
++ K R+ CVF+GF TKGY YDL T ISR+V F ++ FP LQ
Sbjct: 681 NRKKLDPRAHPCVFLGFSPTTKGYITYDLHTRAITISRNVSFYENHFPLLQSTSSTSNIP 740
Query: 1025 ---------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITPLSPTL--LPRRSS-- 1165
+ P S T LP SS
Sbjct: 741 VVSPISFGIHSPSHDLISILPDPHQHNVTSPNPATTSHDSISLAPYSTTADSLPPNSSPL 800
Query: 1166 ----RVVQPPVWMKDYVSNSCSILVXXXXXXXXXISLAGAHYPIPTFPDVTSPSLSAGYM 1333
R+ PP +++DY + S G YPI + ++ LS +
Sbjct: 801 RRSTRLRNPPSYLQDYHHSLTSTSTNLH---------PGMLYPIEKY--ISYSRLSNDFQ 849
Query: 1334 AFLANISGIHEPHHYSEACKDINWIDAMNKELEALEKNATWDLTFLPDGKKAIGCKWVYK 1513
AF+++IS + EPH Y+EA K W+ AM+ ELEAL+ N TW LT LP K+A+GC+W+YK
Sbjct: 850 AFVSSISAVSEPHSYAEAAKHDCWLKAMHAELEALKMNQTWTLTPLPPHKQAVGCRWIYK 909
Query: 1514 VKLHPDGSIDRYKARLVAKGYHQVYGLDYLDSFSPVAKLVTVRMFIAVAIYKGWDIQQLD 1693
+K + DGSI+RYKARLVAKGY QV GLDYL +FSPVAKL TVR+ +A+A W ++QLD
Sbjct: 910 IKYNADGSIERYKARLVAKGYTQVEGLDYLATFSPVAKLTTVRLLLALAAVFDWHLKQLD 969
Query: 1694 INNAFLHGFLDEEIYMVPPDGYHKAAPGQVCRLKRSLYGLKQASRQWNVELCKKLIEFGL 1873
+NNAFLHG L+EE+YM P G QVC+L++SLYGLKQASRQW +L LI G
Sbjct: 970 VNNAFLHGDLNEEVYMTLPLGMRPEYSNQVCKLQKSLYGLKQASRQWFAKLSSFLIHHGY 1029
Query: 1874 TQSQNDHCLFFKKTDTSYLALLIYVDDVLITGSAQADISALKHYLDKMFTIKDMGHAKYF 2053
QS +DH LF K + +S ALLIYVDD+++ G+ ++I + LD F IKD+G+ KYF
Sbjct: 1030 HQSASDHSLFMKFSSSSTTALLIYVDDIVLAGNNLSEIQLITGLLDVAFKIKDLGNLKYF 1089
Query: 2054 LGLEIARGSDGVYLNQRKYILDLLHDTGLSDCKPAKLPFPSGLKLTGKAGEPLQHPDAYR 2233
LGLE+AR G++L+QRKY+LD+L D G+ +P P +L+ +G PL P +YR
Sbjct: 1090 LGLEVARNKSGIHLSQRKYVLDILSDCGMMASRPVSTPMDYTSRLSASSGTPLADPSSYR 1149
Query: 2234 RLVGRLLYLNLTRADITYCVQQLSQFVNDPYSSHWEAAVHVLKYLKGCPSKGLFYSSHGR 2413
RL+GRL+YL TR DI+Y V LSQF++ P ++H +A +L+YLK P GLF+ ++
Sbjct: 1150 RLLGRLIYLTTTRPDISYVVHHLSQFMSAPSTAHSQAIFRILRYLKQAPGSGLFFPTNSS 1209
Query: 2414 FELMAYSDADWASCPDTRRSLTGYCVFLGSSLISWKTKKQCTVSKSSAEAEYRALSTTVC 2593
L A+SD+DWA C DTRRS+TG+ V+LG SLISW++KKQ TVS+SS+EAEYRAL+TT
Sbjct: 1210 LHLKAFSDSDWAGCLDTRRSITGFSVYLGDSLISWRSKKQPTVSRSSSEAEYRALATTTS 1269
Query: 2594 ELQWLAHLALDFCIQVPTPISLWCDNQAALHIVANPVFHERTKHLEIDCHIVRNQFKAGF 2773
ELQWL +L D + V P L+CDNQ+ALHI AN VFHERTKH++IDCH+VR + ++G
Sbjct: 1270 ELQWLTYLLHDLHVPVHQPALLYCDNQSALHIAANQVFHERTKHIDIDCHLVREKLQSGL 1329
Query: 2774 ILPQKVSSSLQLADIFTKSLGQQVFDGLLVKLGMKDLHN 2890
+ V+S QLADIFTKSL +F L KLGM +L++
Sbjct: 1330 LKLLPVASPHQLADIFTKSLSPSMFTALYSKLGMLNLYS 1368
Score = 182 bits (462), Expect = 1e-42
Identities = 133/484 (27%), Positives = 212/484 (43%), Gaps = 9/484 (1%)
Frame = +1
Query: 3334 LLLVSVQLTGNNYLSWSRSMGIALGAKTKLGFVDGTIAMPKADTAEYDQWRRVDLMVTSW 3513
+ LVS L NY SWSRSM AL AK K+ FVDG+ P + Y W+R + MV SW
Sbjct: 1 MALVSPSLDSTNYHSWSRSMLTALSAKNKVEFVDGSAPQPPSSDRIYSAWKRCNNMVVSW 60
Query: 3514 ILNTIAKDIVDAFLYVKSARELWEDIAQRFGECNGTVLYQLQKDIVNLTQGLNSVAVYFT 3693
++ +++ I + L++ SA E+W D+ R+ + + + LQ + ++ QG SV YFT
Sbjct: 61 LVPSVSFSIRQSILWMDSAEEIWRDLKSRYSQGDLLRISALQLEASSIKQGDLSVTDYFT 120
Query: 3694 KLKKLWDEYGSLAP--------AFTCKCGNNKASVDLENITKLNQFLMGLNDSYDHIRSQ 3849
+L+ +WDE + P CK + A LE+ + QFL GLND Y ++RS
Sbjct: 121 QLRIIWDELENFRPDPICVCIVKCICKVSSILAQRKLED--QAMQFLRGLNDQYANVRSH 178
Query: 3850 ILIMDPLPTVNKAYSMVQRVERQRSVSINVGEGTDGVALMTRNMSGSPASVGRGXXXXXX 4029
+L+MDPLP +NK +S V + ERQ +VS ++ E +G A
Sbjct: 179 VLLMDPLPPINKIFSYVAQQERQFAVSDSLAEVKNGFA---------------------- 216
Query: 4030 XXXXXXXXXXXXXXXXXXXXXXXAKLTCEHCRAPGHEMSECFKLHGYPDWFKDLKEQRRR 4209
TC C GH S C++ HG+PD K+ K R
Sbjct: 217 -------------------NAAIMNSTCNFCGRNGHTESTCYRKHGFPD--KNGKSSSNR 255
Query: 4210 -NSVNMVGDSGHLPGEVAQTQPKKDSAGDMAALIQQEIAKYLANTGGVDKSGGNGVNMNY 4386
+ + G +GH T KK G +
Sbjct: 256 GKACSHCGKNGH----TVDTCYKKH---------------------------GFPPGHRF 284
Query: 4387 AHFVDYAGTDMIHDNYCALSTFDESSRHNWIIDTGASKHMCYNEQLLTDLHPVHTKTNIY 4566
++ + + + C +FD + WIID+GA+ H+ + Q T + + +
Sbjct: 285 SNNKSASANSSVQPHICTTHSFDTTP---WIIDSGATDHVTCSLQFFTS-YKLIEPVIVN 340
Query: 4567 LPDGSTKHVEYTGKAHITXXXXXXXXXXXPSFSYNLLSVAQLTESSNLKFIFFPTHCVLQ 4746
LP G ++G + + SF++NL+SV++L +++ + F C +Q
Sbjct: 341 LPTGHKVTATHSGTVYFSSNFQLTDVLYISSFAFNLISVSKLVSTTSYQITFTNNVCFIQ 400
Query: 4747 DLKT 4758
D++T
Sbjct: 401 DIRT 404
>gb|KYP43110.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1353
Score = 799 bits (2064), Expect = 0.0
Identities = 416/932 (44%), Positives = 586/932 (62%), Gaps = 23/932 (2%)
Frame = +2
Query: 155 WHVKLGHPSISVLEHISCLKPFCTAANKKAIEACDVCHRSKQHRLSFPVSTSRATECFEL 334
WH++LGH S L + P NK ++ C++CH +K RL FP S +++ F+L
Sbjct: 424 WHLRLGHLSHDKLSALKGSYPEIQC-NKISLP-CEICHLAKHKRLPFPDSLTKSENVFDL 481
Query: 335 IHVDVWGPFSHGYTSHNPYMLTVVDDYSRATWTYFLAHKSQVTQTLESFFCMVKTQFDKK 514
IHVD+WGP S + Y LT+VDD SR TW +F+ +K + L++F V+TQF +
Sbjct: 482 IHVDIWGPLSVASIFGHKYFLTIVDDKSRFTWIFFMKNKFETKLLLQNFVSFVQTQFQQN 541
Query: 515 VREVRSDNGGEFVNHSLQQLFVSLGILHQRSCVYTPQQNGVVERKHRTLLNLGRALMFQS 694
++ +R+DNG EF+ L+ + LGI+HQ SCV TPQQNGVVERKH+ +L++ RALMFQS
Sbjct: 542 IKTIRTDNGSEFL---LKDWYAKLGIVHQTSCVNTPQQNGVVERKHQHILSMARALMFQS 598
Query: 695 GLPIKFWIYALMYATYIVNRLPSVVLGWETPYELLFGKAPAYDTLKPFGCLVYAANTSPH 874
+ FW YA+ +A +++NRLP+ L +PY +L+ + P + LK FGCL +A+ S +
Sbjct: 599 NVSKMFWNYAIGHAVHLINRLPTRFLQQNSPYYVLYSEKPDFSHLKVFGCLAFASTLSHN 658
Query: 875 KHKFAARSIKCVFMGFHQGTKGYRLYDLDT-------------NQFLISRDVHFCDHFFP 1015
+ K RS KC+F+G+ GTKG+ +YDL T N F + +D P
Sbjct: 659 RTKLEPRSRKCMFLGYSSGTKGFIMYDLKTRETFISRDVQFYENIFPLQKDFSIQSTDGP 718
Query: 1016 FLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITPLSPTLLP----------RRSS 1165
+ +T S + P R S
Sbjct: 719 VVPIAQMPLTSCDPIPSHTHDNLDETEHEHNSSTLPMTNSSNSDQPNIEINIPEIRRTSQ 778
Query: 1166 RVVQPPVWMKDYVSNSCSILVXXXXXXXXXISLAGAHYPIPTFPDVTSPSLSAGYMAFLA 1345
RV P +++DY C++ S + A YPI + TS SA +F++
Sbjct: 779 RVKNRPGYLQDY---HCTLAASKVDQ-----SSSTARYPISDYLPYTS--YSAVQQSFVS 828
Query: 1346 NISGIHEPHHYSEACKDINWIDAMNKELEALEKNATWDLTFLPDGKKAIGCKWVYKVKLH 1525
IS I EP Y +A W +A+ EL+AL+K TW LT LP K+A+GC+WV+KVK H
Sbjct: 829 TISSIIEPRSYQDAINHDCWKEAIRAELDALDKQKTWILTDLPPNKRAVGCRWVFKVKYH 888
Query: 1526 PDGSIDRYKARLVAKGYHQVYGLDYLDSFSPVAKLVTVRMFIAVAIYKGWDIQQLDINNA 1705
DGS++RYKARLVAKG+ Q+ GLDY+D+FSPV ++ T+R+F+A+A W + QLDIN A
Sbjct: 889 ADGSVERYKARLVAKGFTQIPGLDYIDTFSPVVRMTTIRVFLAIAAASNWSVHQLDINTA 948
Query: 1706 FLHGFLDEEIYMVPPDGYHKAAPGQVCRLKRSLYGLKQASRQWNVELCKKLIEFGLTQSQ 1885
FLHG L EE+YM PP G ++P +VC+L++SLYGLKQ SRQWN++L + L FG QS+
Sbjct: 949 FLHGDLVEEVYMKPPPGLILSSPNKVCKLQKSLYGLKQVSRQWNIKLTETLKLFGFVQSK 1008
Query: 1886 NDHCLFFKKTDTSYLALLIYVDDVLITGSAQADISALKHYLDKMFTIKDMGHAKYFLGLE 2065
+D+ LF K+T+ ++A+L+YVDD++I+GS + +I +K LDK F+IKD+G YFLGLE
Sbjct: 1009 SDYSLFTKRTNIGFIAILVYVDDLIISGSDETEIMKVKRLLDKQFSIKDLGQLSYFLGLE 1068
Query: 2066 IARGSDGVYLNQRKYILDLLHDTGLSDCKPAKLPFPSGLKLTGKAGEPLQHPDAYRRLVG 2245
+R G+ + QRKY L+LL DTGL KP P +L + P +YRRLVG
Sbjct: 1069 FSRSDQGISVCQRKYALELLQDTGLLASKPCSTPMDHTTRLHHDPLDLYSDPSSYRRLVG 1128
Query: 2246 RLLYLNLTRADITYCVQQLSQFVNDPYSSHWEAAVHVLKYLKGCPSKGLFYSSHGRFELM 2425
RL+YL TR D+ + V +LSQF++ P ++H++AA VL+Y+K P+KGLF+ S +L
Sbjct: 1129 RLIYLTHTRPDLAFAVGKLSQFMHQPNNAHFQAARKVLRYVKATPTKGLFFPSSSDLKLT 1188
Query: 2426 AYSDADWASCPDTRRSLTGYCVFLGSSLISWKTKKQCTVSKSSAEAEYRALSTTVCELQW 2605
Y+D+DWA+CPD+RRS++G+C FLG++L+SWK+KKQ VS+SS+EAEYRAL+ VCE QW
Sbjct: 1189 GYTDSDWATCPDSRRSISGFCFFLGNALVSWKSKKQNVVSRSSSEAEYRALALGVCEAQW 1248
Query: 2606 LAHLALDFCIQVPTPISLWCDNQAALHIVANPVFHERTKHLEIDCHIVRNQFKAGFILPQ 2785
L L DF +Q PISL+CDNQ+AL+I ANPVFHERTKH+EIDCH VR+Q +AGFI
Sbjct: 1249 LHKLLTDFQLQDLIPISLFCDNQSALYIAANPVFHERTKHVEIDCHTVRDQVQAGFIHLA 1308
Query: 2786 KVSSSLQLADIFTKSLGQQVFDGLLVKLGMKD 2881
++SS QLADI TK L ++F + KLG+ +
Sbjct: 1309 PITSSGQLADILTKPLLPKMFQDFVCKLGLSN 1340
Score = 149 bits (375), Expect = 2e-32
Identities = 112/453 (24%), Positives = 188/453 (41%), Gaps = 1/453 (0%)
Frame = +1
Query: 3391 MGIALGAKTKLGFVDGTIAMPKADTAEYDQWRRVDLMVTSWILNTIAKDIVDAFLYVKSA 3570
M + LG K KL FVDG++A P + W R + +V SWI+ ++ ++ + +++ +A
Sbjct: 1 MLLVLGTKNKLAFVDGSLARPVTAGVDQTAWDRCNKLVISWIVQSLDTSLIPSVIWMPTA 60
Query: 3571 RELWEDIAQRFGECNGTVLYQLQKDIVNLTQGLNSVAVYFTKLKKLWDEYGSLAPAFTCK 3750
++W D+ +R+ + + + +L ++I +L QG S+ YFT L+ LW E P +C
Sbjct: 61 SQIWNDLKKRYYQGDAFRISELLEEIYSLKQGNMSITHYFTTLQGLWQELDHFCPIPSCT 120
Query: 3751 CGNNKASVDLENITKLNQFLMGLNDSYDHIRSQILIMDPLPTVNKAYSMVQRVERQRSVS 3930
C + FL GLN+ Y ++RSQ+++MDPLP+V K +SM+ + ER+
Sbjct: 121 CFTTR-------------FLKGLNEQYSNVRSQVMLMDPLPSVQKVFSMILQQEREFH-- 165
Query: 3931 INVGEGTDGVALMTRNMSGSPASVGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKLT 4110
G + V +T N + +
Sbjct: 166 ---GTNDNQVLAVTSNNERNNYKGSKTFKRNKDYNTK----------------------V 200
Query: 4111 CEHCRAPGHEMSECFKLHGYPDWFKDLKEQRRRNSVNMVGDSGHLPGEVAQTQ-PKKDSA 4287
C HC GH + C+K HG P K R N V D + +Q ++
Sbjct: 201 CSHCGRIGHLVDSCYKKHGPP---LQHKHGRIVNQYQSVSDEDTDDDQSVHSQRVVSHNS 257
Query: 4288 GDMAALIQQEIAKYLANTGGVDKSGGNGVNMNYAHFVDYAGTDMIHDNYCALSTFDESSR 4467
G+M Q + L G+ ++ Y+H D
Sbjct: 258 GNMFTPEQHQALLALLQQSGMI------LSFPYSHNSDC--------------------- 290
Query: 4468 HNWIIDTGASKHMCYNEQLLTDLHPVHTKTNIYLPDGSTKHVEYTGKAHITXXXXXXXXX 4647
WIIDTGA+ H+C N + I LP+GS +G ++
Sbjct: 291 --WIIDTGATDHVCKNINFFQSYRRI-KPILIQLPNGSQVSTCVSGTVLLSKTCYLTDVL 347
Query: 4648 XXPSFSYNLLSVAQLTESSNLKFIFFPTHCVLQ 4746
P+F +NL+SV++L ++ + F + C +Q
Sbjct: 348 FIPNFHFNLISVSKLAKTLSCTLTFSDSDCQIQ 380
>gb|KHN01991.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Glycine soja]
Length = 1311
Score = 798 bits (2060), Expect = 0.0
Identities = 421/926 (45%), Positives = 574/926 (61%), Gaps = 20/926 (2%)
Frame = +2
Query: 155 WHVKLGHPSISVLEHISCLKPFCTAANKKAIEACDVCHRSKQHRLSFPVSTSRATECFEL 334
WH ++GH S E + C+KP C+ CH +K +L F STS A+ F L
Sbjct: 403 WHFRMGHLST---ERLQCMKPHYPILRNDKTFVCNTCHYAKHKKLPFSSSTSHASHIFYL 459
Query: 335 IHVDVWGPFSHGYTSHNPYMLTVVDDYSRATWTYFLAHKSQVTQTLESFFCMVKTQFDKK 514
+HVD+WGP S + Y LT+VDD+SR TW + + K++ + +F V+TQ++KK
Sbjct: 460 LHVDIWGPCSKPSMHGHKYFLTIVDDHSRFTWVHLMHTKAETRDIIVNFIASVETQYNKK 519
Query: 515 VREVRSDNGGEFVNHSLQQLFVSLGILHQRSCVYTPQQNGVVERKHRTLLNLGRALMFQS 694
++++RSDNG EF+ + + S GI+HQ +CV TP+QNG+ ERKH+ LLN+ RAL+FQ+
Sbjct: 520 IKKIRSDNGYEFL---MPSFYASKGIMHQTTCVETPEQNGIAERKHQHLLNVTRALLFQA 576
Query: 695 GLPIKFWIYALMYATYIVNRLPSVVLGWETPYELLFGKAPAYDTLKPFGCLVYAANTSPH 874
LP FW YAL++ATY+VN +P+ L +PYE L G P L+ FGCL YA+ +
Sbjct: 577 NLPSNFWCYALLHATYLVNCIPTPFLHNVSPYEKLHGHLPEISHLRVFGCLCYASTLKAN 636
Query: 875 KHKFAARSIKCVFMGFHQGTKGYRLYDLDTNQFLISRDVHFC-DHF--FPFLQXXXXXXX 1045
+ K R+ C+F+GF TKGY +Y+L + + SR+V F DHF P Q
Sbjct: 637 RKKLDPRAHPCIFIGFKASTKGYLVYNLHLHSIITSRNVVFYEDHFSQIPETQSSHPESS 696
Query: 1046 XXXXXXXXXXXXXXXXXXXXXXXXXXITPLSPTLL---------------PRRSSRVVQP 1180
T +P L PRRS+R
Sbjct: 697 TILPKSFNISPHDPIIEKPPQPVIQETTDHTPLQLTSTDESAFSQRTKHEPRRSTRPKHA 756
Query: 1181 PVWMKDYVSNSCSILVXXXXXXXXXISLAGAHYPIPTFPDVTSPSLSAGYMAFLANISGI 1360
P +++DY + S +S + + YP+ + ++ LS + F+ +IS
Sbjct: 757 PTYLQDYHHSLSS--------HDTKVSTS-SRYPLSSV--LSYSRLSHTHKHFVMSISST 805
Query: 1361 HEPHHYSEACKDINWIDAMNKELEALEKNATWDLTFLPDGKKAIGCKWVYKVKLHPDGSI 1540
EP Y+EA + WI AM EL+AL+ N TW LT LP K AIGC+WVYK+K DGSI
Sbjct: 806 VEPSSYAEASQYDCWIKAMEAELQALQSNNTWKLTLLPPHKTAIGCRWVYKIKHRADGSI 865
Query: 1541 DRYKARLVAKGYHQVYGLDYLDSFSPVAKLVTVRMFIAVAIYKGWDIQQLDINNAFLHGF 1720
+RYKARLVAKGY Q+ GLDYL +FSPVAKL VR+ +A+ + W ++QLD+NNAFLHG
Sbjct: 866 ERYKARLVAKGYTQMEGLDYLYAFSPVAKLTIVRLLLAMVAFNQWHLRQLDVNNAFLHGE 925
Query: 1721 LDEEIYMVPPDGYHKAAPGQVCRLKRSLYGLKQASRQWNVELCKKLIEFGLTQSQNDHCL 1900
LDEE+YM P G VCRL+RSLY LKQASRQW +L LI G +S +DH L
Sbjct: 926 LDEEVYMQVPPGLSVPNSQMVCRLQRSLYELKQASRQWFTKLSGLLISLGFEKSHSDHSL 985
Query: 1901 FFKKTDTSYLALLIYVDDVLITGSAQADISALKHYLDKMFTIKDMGHAKYFLGLEIARGS 2080
F + T + ALL+YVDD+++TG+++++I + LD+ F IKD+G+ KYFLG+EIAR S
Sbjct: 986 FLRFTGSIITALLVYVDDIILTGNSESEIQDVIKLLDQAFKIKDLGNLKYFLGMEIARSS 1045
Query: 2081 DGVYLNQRKYILDLLHDTGLSDCKPAKLPFPSGLKLTGKAGEPL--QHPDAYRRLVGRLL 2254
G++L QRKY LD+L D+G+ C+P P KL AG PL + +YRRL+GRL+
Sbjct: 1046 SGIHLCQRKYTLDILSDSGMLGCQPNVTPMDYSTKLQATAGTPLSTEASSSYRRLIGRLI 1105
Query: 2255 YLNLTRADITYCVQQLSQFVNDPYSSHWEAAVHVLKYLKGCPSKGLFYSSHGRFELMAYS 2434
YL TR DITY VQQLSQ++++P S H +AA +L+YLKG G+F S+ G +L A+S
Sbjct: 1106 YLTNTRPDITYAVQQLSQYMSNPTSVHQQAAYRILRYLKGTSGSGIFLSATGTPQLRAFS 1165
Query: 2435 DADWASCPDTRRSLTGYCVFLGSSLISWKTKKQCTVSKSSAEAEYRALSTTVCELQWLAH 2614
D+DWA C D+R+S TG+ ++LGSS +SW++KKQ TVS+SS+EAEYRA++TT CELQWL +
Sbjct: 1166 DSDWAGCQDSRKSTTGFVIYLGSSPVSWQSKKQSTVSRSSSEAEYRAMATTTCELQWLTY 1225
Query: 2615 LALDFCIQVPTPISLWCDNQAALHIVANPVFHERTKHLEIDCHIVRNQFKAGFILPQKVS 2794
L DF P +++CDNQ+A+ I NPVFHERTKH+EIDCHIVR + +G + V
Sbjct: 1226 LLQDFRHNFTKPATIYCDNQSAIQIATNPVFHERTKHIEIDCHIVRQKVTSGLLKLLPVP 1285
Query: 2795 SSLQLADIFTKSLGQQVFDGLLVKLG 2872
SSLQLADIFTK+L VF L KLG
Sbjct: 1286 SSLQLADIFTKALPPTVFQNLCNKLG 1311
Score = 149 bits (375), Expect = 2e-32
Identities = 93/280 (33%), Positives = 131/280 (46%), Gaps = 7/280 (2%)
Frame = +1
Query: 3355 LTGNNYLSWSRSMGIALGAKTKLGFVDGTIAMPKADTAEYDQWRRVDLMVTSWILNTIAK 3534
L NY SWSRSM IAL AK KL FVDG+ P Y WRR + MV SWI++++A
Sbjct: 1 LDSTNYHSWSRSMIIALSAKNKLEFVDGSAPEPLKTDRTYGAWRRCNNMVLSWIVHSVAA 60
Query: 3535 DIVDAFLYVKSARELWEDIAQRFGECNGTVLYQLQKDIVNLTQGLNSVAVYFTKLKKLWD 3714
I + L++ A ++W D+ R+ + + + LQ++ L QG SV YFT+L+ +WD
Sbjct: 61 SIRQSILWMDKAEDIWRDLKTRYSQGDLLRISDLQQEASTLRQGTLSVTEYFTRLRVIWD 120
Query: 3715 EYGSLAPAFTCKCGNNKASVDLENI-------TKLNQFLMGLNDSYDHIRSQILIMDPLP 3873
E + P C C N + S I + QFL GLND Y +IRS +L+MDP+P
Sbjct: 121 EIENFRPDPACTC-NVRCSCSAFAIIAQRKLEDRAMQFLRGLNDQYTNIRSHVLLMDPIP 179
Query: 3874 TVNKAYSMVQRVERQRSVSINVGEGTDGVALMTRNMSGSPASVGRGXXXXXXXXXXXXXX 4053
+ K +S V + ERQ + + N++ P V
Sbjct: 180 AITKIFSYVAQQERQL------------LGNSSPNLNFEPKDVS---------------- 211
Query: 4054 XXXXXXXXXXXXXXXAKLTCEHCRAPGHEMSECFKLHGYP 4173
AK C +C GH + C+K HG P
Sbjct: 212 ------------INAAKTICNYCGRIGHTENICYKKHGMP 239
>gb|KYP68426.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1423
Score = 801 bits (2068), Expect = 0.0
Identities = 417/932 (44%), Positives = 587/932 (62%), Gaps = 23/932 (2%)
Frame = +2
Query: 155 WHVKLGHPSISVLEHISCLKPFCTAANKKAIEACDVCHRSKQHRLSFPVSTSRATECFEL 334
WH++LGH S L + P NK ++ C++CH +K RL FP S +++ F+L
Sbjct: 494 WHLRLGHLSHDKLSALKGSYPEIQC-NKISLP-CEICHLAKHKRLPFPDSLTKSENVFDL 551
Query: 335 IHVDVWGPFSHGYTSHNPYMLTVVDDYSRATWTYFLAHKSQVTQTLESFFCMVKTQFDKK 514
IHVD+WGP S + Y LT+VDD SR TW +F+ +K + L++F V+TQF +
Sbjct: 552 IHVDIWGPLSVASIFGHKYFLTIVDDKSRFTWIFFMKNKFETKLLLQNFVSFVQTQFQQN 611
Query: 515 VREVRSDNGGEFVNHSLQQLFVSLGILHQRSCVYTPQQNGVVERKHRTLLNLGRALMFQS 694
++ +R+DNG EF+ L+ + LGI+HQ SCV TPQQNGVVERKH+ +L++ RALMFQS
Sbjct: 612 IKTIRTDNGSEFL---LKDWYAKLGIVHQTSCVNTPQQNGVVERKHQHILSMARALMFQS 668
Query: 695 GLPIKFWIYALMYATYIVNRLPSVVLGWETPYELLFGKAPAYDTLKPFGCLVYAANTSPH 874
+ FW YA+ +A +++NRLP+ L +PY +L+ + P + LK FGCL +A+ S +
Sbjct: 669 NVSKMFWNYAIGHAVHLINRLPTRFLQQNSPYYVLYSEKPDFSHLKVFGCLAFASTLSHN 728
Query: 875 KHKFAARSIKCVFMGFHQGTKGYRLYDLDT-------------NQFLISRDVHFCDHFFP 1015
+ K RS KC+F+G+ GTKG+ +YDL T N F + +D P
Sbjct: 729 RTKLEPRSRKCMFLGYSSGTKGFIMYDLKTRETFISRDVQFYENIFPLQKDFSIQSTDGP 788
Query: 1016 FLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITPLSPTLLP----------RRSS 1165
+ +T S + P R S
Sbjct: 789 VVPIAQMPLTSCDPIPSHTHDNLDETEHEHNSSTLPMTNSSNSDQPNIEINIPEIRRTSQ 848
Query: 1166 RVVQPPVWMKDYVSNSCSILVXXXXXXXXXISLAGAHYPIPTFPDVTSPSLSAGYMAFLA 1345
RV P +++DY C++ S + A YPI + TS SA +F++
Sbjct: 849 RVKNRPGYLQDY---HCTLAASKVDQ-----SSSTARYPISDYLPYTS--YSAVQQSFVS 898
Query: 1346 NISGIHEPHHYSEACKDINWIDAMNKELEALEKNATWDLTFLPDGKKAIGCKWVYKVKLH 1525
IS I EP Y +A W +A+ EL+AL+K TW LT LP K+A+GC+WV+KVK H
Sbjct: 899 TISSIIEPRSYQDAINHDCWKEAIRAELDALDKQKTWILTDLPPNKRAVGCRWVFKVKYH 958
Query: 1526 PDGSIDRYKARLVAKGYHQVYGLDYLDSFSPVAKLVTVRMFIAVAIYKGWDIQQLDINNA 1705
DGS++RYKARLVAKG+ Q+ GLDY+D+FSPV ++ T+R+F+A+A W + QLDIN A
Sbjct: 959 ADGSVERYKARLVAKGFTQIPGLDYIDTFSPVVRMTTIRVFLAIAAASNWSVHQLDINTA 1018
Query: 1706 FLHGFLDEEIYMVPPDGYHKAAPGQVCRLKRSLYGLKQASRQWNVELCKKLIEFGLTQSQ 1885
FLHG L EE+YM PP G ++P +VC+L++SLYGLKQASRQWN++L + L FG QS+
Sbjct: 1019 FLHGDLVEEVYMKPPPGLILSSPNKVCKLQKSLYGLKQASRQWNIKLTETLKLFGFVQSK 1078
Query: 1886 NDHCLFFKKTDTSYLALLIYVDDVLITGSAQADISALKHYLDKMFTIKDMGHAKYFLGLE 2065
+D+ LF K+T+ ++A+L+YVDD++I+GS + +I +K LDK F+IKD+G YFLGLE
Sbjct: 1079 SDYSLFTKRTNIGFIAILVYVDDLIISGSDETEIMKVKRLLDKQFSIKDLGQLSYFLGLE 1138
Query: 2066 IARGSDGVYLNQRKYILDLLHDTGLSDCKPAKLPFPSGLKLTGKAGEPLQHPDAYRRLVG 2245
+R G+ + QRKY L+LL DTGL KP P +L + P +YRRLVG
Sbjct: 1139 FSRSDQGISVCQRKYALELLQDTGLLASKPCSTPMDHTTRLHHDPLDLYSDPSSYRRLVG 1198
Query: 2246 RLLYLNLTRADITYCVQQLSQFVNDPYSSHWEAAVHVLKYLKGCPSKGLFYSSHGRFELM 2425
RL+YL TR D+ + V +LSQF++ P ++H++AA VL+Y+K P+KGLF+ S +L
Sbjct: 1199 RLIYLTHTRPDLAFAVGKLSQFMHQPNNAHFQAARKVLRYVKATPTKGLFFPSSSDLKLT 1258
Query: 2426 AYSDADWASCPDTRRSLTGYCVFLGSSLISWKTKKQCTVSKSSAEAEYRALSTTVCELQW 2605
Y+D+DWA+CPD+RRS++G+C FLG++L+SWK+KKQ VS+SS+EAEYRAL+ VCE QW
Sbjct: 1259 GYTDSDWATCPDSRRSISGFCFFLGNALVSWKSKKQNVVSRSSSEAEYRALALGVCEAQW 1318
Query: 2606 LAHLALDFCIQVPTPISLWCDNQAALHIVANPVFHERTKHLEIDCHIVRNQFKAGFILPQ 2785
L L DF +Q PISL+CDNQ+AL+I ANPVFHERTKH+EIDCH VR+Q +AGFI
Sbjct: 1319 LHKLLTDFQLQDLIPISLFCDNQSALYIAANPVFHERTKHVEIDCHTVRDQVQAGFIHLA 1378
Query: 2786 KVSSSLQLADIFTKSLGQQVFDGLLVKLGMKD 2881
++SS QLADI TK L ++F + KLG+ +
Sbjct: 1379 PITSSGQLADILTKPLLPKMFQDFVCKLGLSN 1410
Score = 182 bits (463), Expect = 9e-43
Identities = 128/486 (26%), Positives = 214/486 (44%), Gaps = 4/486 (0%)
Frame = +1
Query: 3301 PFQLHGSDHPGLLLVSVQLTGNNYLSWSRSMGIALGAKTKLGFVDGTIAMPKADTAEYDQ 3480
P+ L +++P + LVS L +NYLSWS+SM + LG K KL F+DG++A P +
Sbjct: 14 PYFLPSNENPSISLVSAPLNDHNYLSWSQSMLLVLGTKNKLAFIDGSLARPVTAGVDQTA 73
Query: 3481 WRRVDLMVTSWILNTIAKDIVDAFLYVKSARELWEDIAQRFGECNGTVLYQLQKDIVNLT 3660
W R + +V SWI+ ++ ++ + +++ +A ++W D+ +R+ + + + +L ++I +L
Sbjct: 74 WDRCNKLVISWIVQSLDTSLIPSVIWMPTASQIWNDLKKRYYQGDAFRISELLEEIYSLK 133
Query: 3661 QGLNSVAVYFTKLKKLWDEYGSLAPAFTCKCGNNKASVDLENITKLNQFLMGLNDSYDHI 3840
QG S+ YFT L+ LW E P +C C + + +FL GLN+ Y ++
Sbjct: 134 QGNMSITHYFTTLQGLWQELDHFCPIPSCTCFTTECVI---------RFLKGLNEQYSNV 184
Query: 3841 RSQILIMDPLPTVNKAYSMVQRVERQRSVSINVGEGTDGVALMTRNMSGSPASVGRGXXX 4020
RSQ+++MDPLP+V K +SM+ + ER+ G + V +T N + +
Sbjct: 185 RSQVMLMDPLPSVQKVFSMILQQEREFH-----GTNDNQVLAVTSNNERNNYKGSKTFKR 239
Query: 4021 XXXXXXXXXXXXXXXXXXXXXXXXXXAKLTCEHCRAPGHEMSECFKLHGYPDWFKDLKEQ 4200
C HC GH + C+K HG P K
Sbjct: 240 NKDYNTK----------------------VCSHCGRIGHLVDSCYKKHGPP---LQHKHG 274
Query: 4201 RRRNSVNMVGDSGHLPGEVAQTQ-PKKDSAGDMAALIQQEIAKYLANTGGVDKSGGNGVN 4377
R N V D + +Q ++G+M Q + L G + + VN
Sbjct: 275 RIVNQYQSVSDEDTDDDQSVHSQRVVSHNSGNMFTPEQHQALLALLQQSG--STSSHSVN 332
Query: 4378 MNYAHFVDYAGTDMIHDNYCALSTFDESSRHN---WIIDTGASKHMCYNEQLLTDLHPVH 4548
AG ++ HN WIIDTGA+ H+C N +
Sbjct: 333 -------QLAGPSILSSPKPPGMILSFPYSHNSDCWIIDTGATDHVCKNINFFQSYRRI- 384
Query: 4549 TKTNIYLPDGSTKHVEYTGKAHITXXXXXXXXXXXPSFSYNLLSVAQLTESSNLKFIFFP 4728
I LP+GS +G ++ P+F +NL+SV++L ++ + F
Sbjct: 385 KPILIQLPNGSQVSTCVSGTVLLSKTCYLTDVLFIPNFHFNLISVSKLAKTLSCTLTFSD 444
Query: 4729 THCVLQ 4746
+ C +Q
Sbjct: 445 SDCQIQ 450
>gb|KYP70921.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1352
Score = 794 bits (2051), Expect = 0.0
Identities = 417/921 (45%), Positives = 566/921 (61%), Gaps = 9/921 (0%)
Frame = +2
Query: 155 WHVKLGHPSISVLEHISCLKPFCTAANKKAIEACDVCHRSKQHRLSFPVSTSRATECFEL 334
WH +LGH L + P C +NK C+ CH +KQ +LSFP+S S A + F L
Sbjct: 443 WHFRLGHLPYDKLHSMKQYYP-CLYSNKHF--TCNTCHHAKQKKLSFPLSHSHALQSFAL 499
Query: 335 IHVDVWGPFSHGYTSHNPYMLTVVDDYSRATWTYFLAHKSQVTQTLESFFCMVKTQFDKK 514
+H+D+WGP S + Y LT+VDD++R TW + +A K+ + +F ++ QF +
Sbjct: 500 LHIDIWGPCSKTSIHGHRYFLTIVDDHTRYTWVFLMASKADTCNCVTNFISHIENQFATR 559
Query: 515 VREVRSDNGGEFVNHSLQQLFVSLGILHQRSCVYTPQQNGVVERKHRTLLNLGRALMFQS 694
V+ +R+DNG EF S+ F S GI+HQ +C+ TP+QN +VERKH+ LLN+ RAL+FQS
Sbjct: 560 VKVIRTDNGAEF---SMNNYFDSKGIIHQTTCIETPEQNRIVERKHQHLLNVTRALLFQS 616
Query: 695 GLPIKFWIYALMYATYIVNRLPSVVLGWETPYELLFGKAPAYDTLKPFGCLVYAANTSPH 874
LP FW +ALM+ATYI+N +P+ L +P+E L GK TL+ FGCL Y + H
Sbjct: 617 NLPPTFWNFALMHATYIINCIPTPFLQHTSPFENLNGKPCDITTLRVFGCLCYVSTLKAH 676
Query: 875 KHKFAARSIKCVFMGFHQGTKGYRLYDLDTNQFLISRDVHFCDHFFPFL-------QXXX 1033
+ K R+ CVF+GF TKGY ++L+T +SR+V F ++ FP+
Sbjct: 677 RTKLDPRASPCVFLGFQPHTKGYLTFNLNTRSIEVSRNVVFYENHFPYFTQDTQSASSTP 736
Query: 1034 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITPLSPTL--LPRRSSRVVQPPVWMKDYVS 1207
+P SPT +P R +R PP +++DY
Sbjct: 737 SLPTPFTSNPMIHDYNFYPPSPSSHPPHSLSSPESPTSSPIPSRPTRSRHPPSYLRDYHM 796
Query: 1208 NSCSILVXXXXXXXXXISLAGAHYPIPTFPDVTSPSLSAGYMAFLANISGIHEPHHYSEA 1387
S S G YP+ + ++ LS + F+ +IS + EP Y+EA
Sbjct: 797 TFTST---------GPSSSPGIRYPLDSV--ISYNRLSHPFRHFIMSISLLTEPKSYAEA 845
Query: 1388 CKDINWIDAMNKELEALEKNATWDLTFLPDGKKAIGCKWVYKVKLHPDGSIDRYKARLVA 1567
K WI AM E+ ALE N TW +T LP K AIGCKW+YKVK H DGS++R+KARLVA
Sbjct: 846 SKSDCWIKAMTDEITALEANNTWTVTSLPPHKTAIGCKWIYKVKHHADGSVERHKARLVA 905
Query: 1568 KGYHQVYGLDYLDSFSPVAKLVTVRMFIAVAIYKGWDIQQLDINNAFLHGFLDEEIYMVP 1747
KGY Q+ GLD+LD+F+PVAKL TV + +++A W ++QLDINNAFLHG L+EE+YM
Sbjct: 906 KGYTQLEGLDFLDTFAPVAKLTTVHLLLSLAAIHNWFLKQLDINNAFLHGDLNEEVYMHL 965
Query: 1748 PDGYHKAAPGQVCRLKRSLYGLKQASRQWNVELCKKLIEFGLTQSQNDHCLFFKKTDTSY 1927
P G PGQVC+L RSLYGLKQASRQW L +++ G S DH LF K T+++
Sbjct: 966 PPGLTTTTPGQVCKLNRSLYGLKQASRQWYARLSTFIMQQGFHHSSADHSLFLKFTNSAC 1025
Query: 1928 LALLIYVDDVLITGSAQADISALKHYLDKMFTIKDMGHAKYFLGLEIARGSDGVYLNQRK 2107
ALL+YVDD+++ G+ +I + L K F IKD+G YFLGLE+AR S ++L QRK
Sbjct: 1026 TALLVYVDDIVLAGNDLTEIHQITALLHKTFKIKDLGDLTYFLGLEVARNSIEIHLCQRK 1085
Query: 2108 YILDLLHDTGLSDCKPAKLPFPSGLKLTGKAGEPLQHPDAYRRLVGRLLYLNLTRADITY 2287
Y LD+L DTG+ C P+ L+ G PL P AYR+L+GRL+YL T DIT+
Sbjct: 1086 YTLDILSDTGMLACCPSSTLMDYKAALSSDTGTPLTDPSAYRQLIGRLIYLTNTHPDITH 1145
Query: 2288 CVQQLSQFVNDPYSSHWEAAVHVLKYLKGCPSKGLFYSSHGRFELMAYSDADWASCPDTR 2467
VQ LSQF + P + H AA +L+YLK P +G+F S++ +L ++SD+DWA C DTR
Sbjct: 1146 AVQHLSQFASKPTTYHQHAAFRILRYLKQAPGRGIFLSANSSLQLKSFSDSDWAGCMDTR 1205
Query: 2468 RSLTGYCVFLGSSLISWKTKKQCTVSKSSAEAEYRALSTTVCELQWLAHLALDFCIQVPT 2647
RS+TG+ V+LG SLISWK+KKQ TVS+SS+EAEYRAL++T CE+QWL +L DF +Q
Sbjct: 1206 RSITGFAVYLGHSLISWKSKKQATVSRSSSEAEYRALASTSCEIQWLTYLLEDFRLQFIR 1265
Query: 2648 PISLWCDNQAALHIVANPVFHERTKHLEIDCHIVRNQFKAGFILPQKVSSSLQLADIFTK 2827
P L+CDNQ+ L I N VFHERTKH+EIDCH+VR + G + VSSS QLADI+TK
Sbjct: 1266 PALLYCDNQSVLQIACNQVFHERTKHIEIDCHLVREKVSNGLLKLLPVSSSAQLADIYTK 1325
Query: 2828 SLGQQVFDGLLVKLGMKDLHN 2890
+L F+ L KLGM D+++
Sbjct: 1326 ALSPSRFNELNSKLGMSDIYS 1346
Score = 118 bits (296), Expect = 4e-23
Identities = 97/411 (23%), Positives = 166/411 (40%), Gaps = 18/411 (4%)
Frame = +1
Query: 3580 WEDIAQRFGECNGTVLYQLQKDIVNLTQGLNSVAVYFTKLKKLWDEYGSLAPAFTCKCGN 3759
W R+ + + + LQ + ++ QG S+ +FTKL+ +WDE + P TC C
Sbjct: 39 WSRSISRYAQSDLLRISDLQHEASSIRQGDLSITEFFTKLRVIWDELENFRPDPTCSCTQ 98
Query: 3760 NKASVDLENITKLN------QFLMGLNDSYDHIRSQILIMDPLPTVNKAYSMVQRVERQR 3921
+ + I + QFL GLN+ Y +++S +L+MDP+P ++K +S V + ERQ
Sbjct: 99 KCSCNVIPTIAQRKREDQAMQFLRGLNEQYSNVKSHVLLMDPIPPISKIFSYVVQQERQL 158
Query: 3922 SVSINVGEGTDGVALMTRNMSGSPASVGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA 4101
S V A++ S
Sbjct: 159 LGSNFVANTITKTAIINAASS--------------------------------------- 179
Query: 4102 KLTCEHCRAPGHEMSECFKLHGYPDWFKDLKEQRRRNSV--NMVGDSGHLPGEVAQTQPK 4275
+TC +C GH + C++ HG+P E + V +G + + V T
Sbjct: 180 -VTCTYCGKQGHAENVCYRKHGFP----SNHENKTNKGVYKASIGKTSIVNSTV--TDEC 232
Query: 4276 KDSAGDMAALIQQ--------EIAKYLANTGGVDKSGGNGVNMNYAHFVDYAGTDMI--H 4425
K + A + Q ++ L D S + N+ H V T
Sbjct: 233 KTNDQQQATITQDYRFTPQQYQVLMDLIQQCTNDSSASPSPSTNHIHSVSSCSTQPSPPP 292
Query: 4426 DNYCALSTFDESSRHNWIIDTGASKHMCYNEQLLTDLHPVHTKTNIYLPDGSTKHVEYTG 4605
++ST + S +W+ID+GA+ H+ + + ++ T + LP G + G
Sbjct: 293 GTVSSISTHTQIST-SWVIDSGATDHVSSSLSNFFTYNSINPIT-VKLPTGQHVLATHAG 350
Query: 4606 KAHITXXXXXXXXXXXPSFSYNLLSVAQLTESSNLKFIFFPTHCVLQDLKT 4758
T P F YNL+S+++L S +++ IF+ THC++QD+ T
Sbjct: 351 VVKFTDTFYLTDVLFIPEFKYNLISISKLVSSLDVQLIFYSTHCLIQDVNT 401
>emb|CAN73272.1| hypothetical protein VITISV_013115 [Vitis vinifera]
Length = 1178
Score = 786 bits (2029), Expect = 0.0
Identities = 410/920 (44%), Positives = 570/920 (61%), Gaps = 5/920 (0%)
Frame = +2
Query: 155 WHVKLGHPSISVLEHISCLKPFCTAANKKAIEACDVCHRSKQHRLSFPVSTSRATECFEL 334
WH ++GHPS V++ + + + NK AC++C R+K R FP+S ++AT FE
Sbjct: 269 WHKRMGHPSEKVVKLLPPVSNLKGSLNK----ACEICFRAKHXRDKFPLSDNKATRIFEK 324
Query: 335 IHVDVWGPFSHGYTSHNPYMLTVVDDYSRATWTYFLAHKSQVTQTLESFFCMVKTQFDKK 514
IH D+WG + H + Y LT+VDD+SRA W Y L K++V + SF MV QF +
Sbjct: 325 IHCDLWGSYKHVSSCGARYFLTIVDDFSRAVWIYLLVDKTEVFRMFMSFIAMVDRQFSQT 384
Query: 515 VREVRSDNGGEFVNHSLQQLFVSLGILHQRSCVYTPQQNGVVERKHRTLLNLGRALMFQS 694
V+ V+SDNG EF L F + GIL Q SCV TPQQNG VERKH+ +LN+GRAL FQ+
Sbjct: 385 VKVVQSDNGTEF--KCLLDYFSATGILFQTSCVGTPQQNGRVERKHKHILNVGRALRFQA 442
Query: 695 GLPIKFWIYALMYATYIVNRLPSVVLGWETPYELLFGKAPAYDTLKPFGCLVYAANTSPH 874
LPI FW +++ A +++NR PS +L +TP+E+LFG P+Y + FGCL +A +
Sbjct: 443 NLPIYFWGESVLAAAHLINRTPSPLLHNKTPFEILFGTPPSYAAIHTFGCLSFAHDXKSK 502
Query: 875 KHKFAARSIKCVFMGFHQGTKGYRLYDLDTNQFLISRDVHFCDHFFPFLQXXXXXXXXXX 1054
KFA+RS KCVF+G+ G KG++L+DLDT + +SRDV F + FPF
Sbjct: 503 GDKFASRSRKCVFLGYPFGKKGWKLFDLDTKELFVSRDVKFFEDVFPFGNPGAVNIIPEN 562
Query: 1055 XXXXXXXXXXXXXXXXXXXXXXXITPLSPTLLPR-----RSSRVVQPPVWMKDYVSNSCS 1219
L + + + R P V ++D+V+++
Sbjct: 563 IVPTASSAPLSPGPEVVPTVGLDSLGLDNSSNGQSAPMGKGMRDKFPSVLLRDFVTHTV- 621
Query: 1220 ILVXXXXXXXXXISLAGAHYPIPTFPDVTSPSLSAGYMAFLANISGIHEPHHYSEACKDI 1399
+ +G YPI + + + S Y FLA I ++P + EA KD+
Sbjct: 622 VAESPSPATPXPQHPSGTPYPIAHY--INCDNFSVHYRKFLATIISSNDPKSFKEAMKDV 679
Query: 1400 NWIDAMNKELEALEKNATWDLTFLPDGKKAIGCKWVYKVKLHPDGSIDRYKARLVAKGYH 1579
W +M++E+ ALE+N TW L LP GK+A+G +WVY+ K +G I+R K+RLV G H
Sbjct: 680 GWQKSMHEEIRALEENGTWTLEPLPKGKRALGSQWVYRTKYFSNGDIERLKSRLVVLGNH 739
Query: 1580 QVYGLDYLDSFSPVAKLVTVRMFIAVAIYKGWDIQQLDINNAFLHGFLDEEIYMVPPDGY 1759
Q G+DY ++FSPVAK+ TVR F+A+A K W++ Q+D++NAFLHG L+EE+YM P G+
Sbjct: 740 QEAGIDYHETFSPVAKMTTVRAFLAIAASKNWELHQMDVHNAFLHGDLEEEVYMKLPPGF 799
Query: 1760 HKAAPGQVCRLKRSLYGLKQASRQWNVELCKKLIEFGLTQSQNDHCLFFKKTDTSYLALL 1939
++ P VCRL++SLYGLKQA R W +L L +G QS +D+ LF T + +L
Sbjct: 800 ERSDPNLVCRLRKSLYGLKQAPRCWFSKLVTALKGYGFLQSYSDYSLFTYTTGNVQINVL 859
Query: 1940 IYVDDVLITGSAQADISALKHYLDKMFTIKDMGHAKYFLGLEIARGSDGVYLNQRKYILD 2119
+YVDD++I+G+ A + K YL F +KD+G KYFLG+E+AR S G++L QRKY LD
Sbjct: 860 VYVDDLIISGNDSAALKTFKAYLSDCFKMKDLGVLKYFLGIEVARSSAGLFLCQRKYTLD 919
Query: 2120 LLHDTGLSDCKPAKLPFPSGLKLTGKAGEPLQHPDAYRRLVGRLLYLNLTRADITYCVQQ 2299
++ + GL KP P +L GE L +P++YRRLVGRL+YL +TR D+ Y V
Sbjct: 920 IVSEAGLLGAKPCGFPIEQNHRLXLANGELLSNPESYRRLVGRLIYLAVTRPDLAYSVHI 979
Query: 2300 LSQFVNDPYSSHWEAAVHVLKYLKGCPSKGLFYSSHGRFELMAYSDADWASCPDTRRSLT 2479
LSQF+ +P HWEAA+ V++YLKG P +G+ + L + D+DWA+CP TRRSL+
Sbjct: 980 LSQFMXEPRIEHWEAALRVVRYLKGTPGQGILLRADSDLSLQGWCDSDWAACPVTRRSLS 1039
Query: 2480 GYCVFLGSSLISWKTKKQCTVSKSSAEAEYRALSTTVCELQWLAHLALDFCIQVPTPISL 2659
G+ VFLG S ISWKTKKQ TVS+SSAEAEYRA++ CEL+WL L L + P I L
Sbjct: 1040 GWLVFLGQSPISWKTKKQHTVSRSSAEAEYRAMAAVTCELKWLKGLLLSLGVHHPKAIKL 1099
Query: 2660 WCDNQAALHIVANPVFHERTKHLEIDCHIVRNQFKAGFILPQKVSSSLQLADIFTKSLGQ 2839
+CD+Q+ALH+ NPVFHERTKH+E+DCH VR+ G I P V + QLADIFTK+LG+
Sbjct: 1100 FCDSQSALHMAKNPVFHERTKHIEVDCHFVRDAITDGLIAPSYVPTVTQLADIFTKALGK 1159
Query: 2840 QVFDGLLVKLGMKDLHNSPT 2899
+ FD LL KLG+ + H +PT
Sbjct: 1160 KQFDYLLAKLGIFEPH-APT 1178
>gb|KYP64985.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1394
Score = 792 bits (2046), Expect = 0.0
Identities = 411/929 (44%), Positives = 563/929 (60%), Gaps = 17/929 (1%)
Frame = +2
Query: 155 WHVKLGHPSISVLEHISCLKPFCTAANKKAIEACDVCHRSKQHRLSFPVSTSRATECFEL 334
WH +LGH S S+L+ +S N CD CH +K +L FPV S+++ FEL
Sbjct: 471 WHHRLGHTSNSILQLLSSQYNDIIYKN---CTPCDTCHFAKHKKLPFPVCISKSSHLFEL 527
Query: 335 IHVDVWGPFSHGYTSHNPYMLTVVDDYSRATWTYFLAHKSQVTQTLESFFCMVKTQFDKK 514
+H D+WGP + Y LT+VDD+SR TW + L K++V L F +++ QF K
Sbjct: 528 LHADIWGPLHTISIDGHKYFLTLVDDFSRFTWVHLLKSKAEVKTVLPKFIHLIENQFGIK 587
Query: 515 VREVRSDNGGEFVNHSLQQLFVSLGILHQRSCVYTPQQNGVVERKHRTLLNLGRALMFQS 694
++ +RSDNG EF L F S GI H+ SC+ TPQQNG+VERKH+ +LN+ RAL+FQS
Sbjct: 588 LKRLRSDNGKEFF---LTDFFSSKGIFHETSCIETPQQNGIVERKHQHILNVARALLFQS 644
Query: 695 GLPIKFWIYALMYATYIVNRLPSVVLGWETPYELLFGKAPAYDTLKPFGCLVYAANTSPH 874
GL FW YA+ +A +++NRLP+ L ++PYE +FGK P TL+ FGCL +A +
Sbjct: 645 GLSSVFWSYAIKHAVHLINRLPTPFLENKSPYESVFGKIPDLSTLRVFGCLAFANTITSG 704
Query: 875 KHKFAARSIKCVFMGFHQGTKGYRLYDLDTNQFLISRDVHFCDHFFPFLQXXXXXXXXXX 1054
K R+ KC+F+GF G KGY L++L T FL+SR+V F + FP+
Sbjct: 705 ITKLDKRASKCIFLGFKPGVKGYLLFNLTTKSFLLSRNVIFYESHFPYASNSPSVSNNHT 764
Query: 1055 XXXXXXXXXXXXXXXXXXXXXXXITPLSPTLLPRRSSRVVQPPVWMKDYVSNSCSILVXX 1234
S + V+P + D +++ I+
Sbjct: 765 TGTTASQQSFDSLIAFDIISAIPNNVTSDIVSSNIDHNAVEPVLQFNDDSNDAVQIVDQP 824
Query: 1235 XXXXXXXISLAG--AHYPIPTFPDVT----SPSLSAGYMAFLANISGIH----------- 1363
+ Y PT +P Y+++ +N S H
Sbjct: 825 TRISTRPRKPPAYLSDYDCPTLSSANTSCCTPYPLHSYLSY-SNCSDSHTAFCMSLSATI 883
Query: 1364 EPHHYSEACKDINWIDAMNKELEALEKNATWDLTFLPDGKKAIGCKWVYKVKLHPDGSID 1543
EP + EACK +W AM E++ALE+N TW L LP K+ +GCKWVYK KL+ DGSI+
Sbjct: 884 EPTSFKEACKHDHWQQAMLAEIQALERNKTWSLVRLPPKKRVVGCKWVYKTKLNADGSIE 943
Query: 1544 RYKARLVAKGYHQVYGLDYLDSFSPVAKLVTVRMFIAVAIYKGWDIQQLDINNAFLHGFL 1723
R+KARLVAKG+ Q G+D+ ++FSPV KL TVR ++VA+ W + QLD++NAFLHG L
Sbjct: 944 RHKARLVAKGFTQTEGMDFFETFSPVVKLTTVRFLLSVAVSHNWFLHQLDVDNAFLHGDL 1003
Query: 1724 DEEIYMVPPDGYHKAAPGQVCRLKRSLYGLKQASRQWNVELCKKLIEFGLTQSQNDHCLF 1903
D E+YM PP G P VC+L +SLYGL+QASRQ N +L LI +G +QS DH LF
Sbjct: 1004 DVEVYMKPPPGLILPEPHLVCKLHKSLYGLRQASRQGNSKLTSALISYGFSQSPADHSLF 1063
Query: 1904 FKKTDTSYLALLIYVDDVLITGSAQADISALKHYLDKMFTIKDMGHAKYFLGLEIARGSD 2083
+ + TS+ ALL+YVDD+++TG + DI A+K +L F IKD+G+ K FLG ++AR
Sbjct: 1064 IRHSSTSFTALLVYVDDIVLTGDSIQDIVAVKKFLHHEFRIKDLGNLKLFLGFDVARSQQ 1123
Query: 2084 GVYLNQRKYILDLLHDTGLSDCKPAKLPFPSGLKLTGKAGEPLQHPDAYRRLVGRLLYLN 2263
G+ LNQRKY LD+L + G + CKPA P +KL G+ +Q P AYRRL+G+L YL
Sbjct: 1124 GLILNQRKYCLDILAEFGFTGCKPANSPSNPTVKLKDDEGDLVQDPTAYRRLIGKLQYLT 1183
Query: 2264 LTRADITYCVQQLSQFVNDPYSSHWEAAVHVLKYLKGCPSKGLFYSSHGRFELMAYSDAD 2443
TR DI++ VQQ+SQF++ P SH AA +LKYLKGCP GLFY S + A+SD+D
Sbjct: 1184 NTRPDISFAVQQVSQFMSKPRYSHLNAAFRILKYLKGCPGLGLFYPSANPHRIQAFSDSD 1243
Query: 2444 WASCPDTRRSLTGYCVFLGSSLISWKTKKQCTVSKSSAEAEYRALSTTVCELQWLAHLAL 2623
WA+C TR+S TGYCVF G+ LISWK+KKQ TVS+SS EAEYRAL++ CELQWL ++A
Sbjct: 1244 WATCCITRKSTTGYCVFYGNCLISWKSKKQSTVSRSSTEAEYRALASVACELQWLKYVAD 1303
Query: 2624 DFCIQVPTPISLWCDNQAALHIVANPVFHERTKHLEIDCHIVRNQFKAGFILPQKVSSSL 2803
D C+Q+P P +CDNQ+A+ + NP FHERTKH+E+DCH++R + G I+ V S
Sbjct: 1304 DLCLQIPLPFPTFCDNQSAIQLAKNPSFHERTKHIEVDCHLIRAKILDGLIVLSHVPSKH 1363
Query: 2804 QLADIFTKSLGQQVFDGLLVKLGMKDLHN 2890
QLAD+FTKSL F+ L K+G+ ++H+
Sbjct: 1364 QLADMFTKSLYPGPFNVNLSKMGLLNIHH 1392
Score = 146 bits (368), Expect = 1e-31
Identities = 121/466 (25%), Positives = 195/466 (41%), Gaps = 17/466 (3%)
Frame = +1
Query: 3391 MGIALGAKTKLGFVDGTIAMPKADTAEYDQWRRVDLMVTSWILNTIAKDIVDAFLYVKSA 3570
M ++L K K F+DGT++ P ++ WRR + MV SW+ ++ I + +++ +A
Sbjct: 1 MVVSLETKNKEKFIDGTLSCPPITDPLHEAWRRSNRMVMSWLTRSMTPSIKQSVMWMDTA 60
Query: 3571 RELWEDIAQRFGECNGTVLYQLQKDIVNLTQGLNSVAVYFTKLKKLWDEYGSLAPAFTCK 3750
E+W D+ RF + + LQ I+ QG SV+ Y+TKLK LW E TC
Sbjct: 61 LEIWRDLKDRFSHADKFRICDLQDQILACRQGDFSVSEYYTKLKILWKELELYRCVLTCT 120
Query: 3751 CGNNKASVDLENITK------LNQFLMGLNDSYDHIRSQILIMDPLPTVNKAYSMVQRVE 3912
C L + K + +FL GLN+SY +RSQI+++DP+P++ K +SMV + E
Sbjct: 121 CLTPCKCGLLSKLHKEREDDYVIRFLRGLNESYAQVRSQIMMLDPMPSIVKTFSMVLQHE 180
Query: 3913 RQRSVSINVGEGTDGVAL--MTRNMSGSPASVGRGXXXXXXXXXXXXXXXXXXXXXXXXX 4086
R+ I D +A M+ N +S
Sbjct: 181 REFIGLIPKHSVPDSLAFAAMSTNQPRFNSS--------------------DRTNSNASK 220
Query: 4087 XXXXAKLTCEHCRAPGHEMSECFKLHGYPDWFKDLKEQRRRNSVNMVGDSG----HLPGE 4254
CE C+ H + C+ G+P ++ K + ++ + DS HL +
Sbjct: 221 NNSKNNKFCEKCKKTNHTIETCYFRIGFPAGYRKNKTNNKASASLVEVDSNASLPHLDLD 280
Query: 4255 VAQTQPK----KDSAGDMAALIQQEIA-KYLANTGGVDKSGGNGVNMNYAHFVDYAGTDM 4419
+ T + KD + AL+Q A L N V SG
Sbjct: 281 GSPTNDQFTFSKDQYHALLALLQHTKAHSSLVNHSSVHNSG------------------- 321
Query: 4420 IHDNYCALSTFDESSRHNWIIDTGASKHMCYNEQLLTDLHPVHTKTNIYLPDGSTKHVEY 4599
S+ ++WI+D+GA+ H+C + L DL I LP+ +T +
Sbjct: 322 -----------TSSAFNHWIVDSGATDHICPTKSLFHDLRAT-KPIPIKLPNSTTVIANF 369
Query: 4600 TGKAHITXXXXXXXXXXXPSFSYNLLSVAQLTESSNLKFIFFPTHC 4737
+G HI P FS +L+SV +L + + +F +HC
Sbjct: 370 SGNIHI-GDLLLADVLFVPEFSVSLISVPKLVSTIDCMAVFCDSHC 414
>emb|CAN82526.1| hypothetical protein VITISV_028058 [Vitis vinifera]
Length = 1125
Score = 782 bits (2020), Expect = 0.0
Identities = 428/969 (44%), Positives = 568/969 (58%), Gaps = 3/969 (0%)
Frame = +2
Query: 2 DLKTDKVVAVGKAQGRLYILHPKSSVQ--SSFPLIXXXXXXXXXXXXXXELLNWHVKLGH 175
DL T + +G+ + LY L +S + + P WH +LGH
Sbjct: 200 DLTTRTTIGLGEQRDGLYYLVALASEKPKTQTPSAATTSCRSPSSQVTSSTALWHRRLGH 259
Query: 176 PSISVLEHISC-LKPFCTAANKKAIEACDVCHRSKQHRLSFPVSTSRATECFELIHVDVW 352
S S L+ ++ L F +N ACDVC +KQ +L F VS+ + FELIH D+W
Sbjct: 260 LSSSRLDFMAKHLLNFHFQSNN----ACDVCALAKQRQLPFSVSSISSVRPFELIHCDIW 315
Query: 353 GPFSHGYTSHNPYMLTVVDDYSRATWTYFLAHKSQVTQTLESFFCMVKTQFDKKVREVRS 532
GP+ S Y LT+VDDYSR T +F+ HKS+ L +FF V+TQF + +R
Sbjct: 316 GPYKIASLSGAKYFLTIVDDYSRFTXVFFMHHKSETQHLLVNFFSFVQTQFHVSIANIRV 375
Query: 533 DNGGEFVNHSLQQLFVSLGILHQRSCVYTPQQNGVVERKHRTLLNLGRALMFQSGLPIKF 712
DNGGEF S ++ F G +Q SCVYTPQQNGVVERKHR +L RA FQ+ LP+ F
Sbjct: 376 DNGGEFF--SXREFFKQKGTTYQHSCVYTPQQNGVVERKHRHILESARAFXFQAHLPLPF 433
Query: 713 WIYALMYATYIVNRLPSVVLGWETPYELLFGKAPAYDTLKPFGCLVYAANTSPHKHKFAA 892
W + A +I+NRLP+ +L +TP+E L+GK P+Y ++ FGCL YA N HKFA
Sbjct: 434 WAECVSTAVHIINRLPTPLLSRQTPFERLYGKLPSYSHIRVFGCLAYATNVHV-PHKFAP 492
Query: 893 RSIKCVFMGFHQGTKGYRLYDLDTNQFLISRDVHFCDHFFPFLQXXXXXXXXXXXXXXXX 1072
R+ +C+F+G+ G K Y+LYDLDT+Q SRDV F + FP+
Sbjct: 493 RAKRCIFLGYPVGQKAYKLYDLDTHQMFTSRDVVFHETIFPY-----------------E 535
Query: 1073 XXXXXXXXXXXXXXXXXITPLSPTLLPRRSSRVVQPPVWMKDYVSNSCSILVXXXXXXXX 1252
+ P + RRS R PP+ ++DYV N +
Sbjct: 536 SIPSPSSNSDPFLLSHHLASPPPEPILRRSQRPHHPPMALRDYVCNQ--VTSPNHLPPLS 593
Query: 1253 XISLAGAHYPIPTFPDVTSPSLSAGYMAFLANISGIHEPHHYSEACKDINWIDAMNKELE 1432
G YP+ F V+ S + +F A +S EP Y+EA +W +AM EL
Sbjct: 594 SSPQKGTRYPLCNF--VSYHRYSPQHRSFTAAVSQDIEPTSYAEATSHSHWQEAMQSELA 651
Query: 1433 ALEKNATWDLTFLPDGKKAIGCKWVYKVKLHPDGSIDRYKARLVAKGYHQVYGLDYLDSF 1612
LE N TW LT LP GKK IGC+WVYK+K H DG+I+R+KARLVAKGY Q+ G+DY D+F
Sbjct: 652 TLEANHTWSLTSLPPGKKPIGCRWVYKIKXHSDGTIERFKARLVAKGYTQLEGIDYHDTF 711
Query: 1613 SPVAKLVTVRMFIAVAIYKGWDIQQLDINNAFLHGFLDEEIYMVPPDGYHKAAPGQVCRL 1792
SP AK++ VR +A+A + W + QLD +M PP + VC L
Sbjct: 712 SPTAKMIXVRCLLALAAAQNWSLHQLDK-------------FMSPPPSLRRQGENLVCHL 758
Query: 1793 KRSLYGLKQASRQWNVELCKKLIEFGLTQSQNDHCLFFKKTDTSYLALLIYVDDVLITGS 1972
+SLYGLKQASRQW + + G QS+ D+ LF + S+ ALLIYVDD+LITG+
Sbjct: 759 HKSLYGLKQASRQWFAKFSTAIQAVGFIQSKADYSLFTCRKGKSFTALLIYVDDILITGN 818
Query: 1973 AQADISALKHYLDKMFTIKDMGHAKYFLGLEIARGSDGVYLNQRKYILDLLHDTGLSDCK 2152
I ALK +L F IKD+G KYFLG+E++R G+ ++QRKY L++L D G K
Sbjct: 819 DVNAIVALKQFLHSHFRIKDLGDLKYFLGIEVSRSKKGISISQRKYTLEILKDGGFLGAK 878
Query: 2153 PAKLPFPSGLKLTGKAGEPLQHPDAYRRLVGRLLYLNLTRADITYCVQQLSQFVNDPYSS 2332
P P KL+ +GE L+ P YRRLVGRL+YL +TR DITY V LS+F++ P
Sbjct: 879 PVNFPMEQNTKLSD-SGELLKGPSQYRRLVGRLIYLTITRPDITYSVHVLSRFMHAPRRP 937
Query: 2333 HWEAAVHVLKYLKGCPSKGLFYSSHGRFELMAYSDADWASCPDTRRSLTGYCVFLGSSLI 2512
H EAA+ VL+YLK P +GLF+ S L A+SD DWA CP +RRS TGYCVFLGSSLI
Sbjct: 938 HMEAALRVLRYLKNSPGQGLFFPSQNDLSLRAFSDXDWAGCPISRRSXTGYCVFLGSSLI 997
Query: 2513 SWKTKKQCTVSKSSAEAEYRALSTTVCELQWLAHLALDFCIQVPTPISLWCDNQAALHIV 2692
SW+TK+Q TVS SS EAEYRA++ T CEL WL L D I P P L+CDN AALHI
Sbjct: 998 SWRTKRQKTVSLSSXEAEYRAMAGTCCELSWLRSLLKDLRILHPKPALLYCDNTAALHIA 1057
Query: 2693 ANPVFHERTKHLEIDCHIVRNQFKAGFILPQKVSSSLQLADIFTKSLGQQVFDGLLVKLG 2872
NPVFHERT+H+E+DCH +R++ + G ++ + ++S+ Q AD+FTK LG++ F ++ KLG
Sbjct: 1058 VNPVFHERTRHIEMDCHFIRDKIQDGSVVTKHIASTDQXADVFTKPLGKETFSTMIHKLG 1117
Query: 2873 MKDLHNSPT 2899
+ D+H SPT
Sbjct: 1118 VLDIH-SPT 1125
>gb|KYP39497.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1445
Score = 792 bits (2046), Expect = 0.0
Identities = 412/925 (44%), Positives = 572/925 (61%), Gaps = 14/925 (1%)
Frame = +2
Query: 155 WHVKLGHPSISVLEHISCLKPFCTAANKKAIEACDVCHRSKQHRLSFPVSTSRATECFEL 334
WH KLGHPS VL+ +S T+ + CD+C +KQ +L FP STS FEL
Sbjct: 538 WHAKLGHPSNKVLQTLSSQY---TSIKFPLVHVCDICSFAKQKKLPFPDSTSITNFFFEL 594
Query: 335 IHVDVWGPFSHGYTSHNPYMLTVVDDYSRATWTYFLAHKSQVTQTLESFFCMVKTQFDKK 514
IHVD+WGP + Y LTVVDDYSR TW + L K +V L +F +++ Q D K
Sbjct: 595 IHVDIWGPLAISSIEGYKYFLTVVDDYSRFTWIHLLKSKQEVKSLLPNFIILIENQHDCK 654
Query: 515 VREVRSDNGGEFVNHSLQQLFVSLGILHQRSCVYTPQQNGVVERKHRTLLNLGRALMFQS 694
++ +RSDNG EF+ L + + GILH+ SCV TPQQNG+VERKH+ LLN+ RAL+FQS
Sbjct: 655 LKRLRSDNGKEFI---LTNFYNAKGILHETSCVETPQQNGIVERKHQHLLNVCRALLFQS 711
Query: 695 GLPIKFWIYALMYATYIVNRLPSVVLGWETPYELLFGKAPAYDTLKPFGCLVYAANTSPH 874
+P FW YA+ +A +I+NRLP+ L ++P+E+++ P L+ FGCL YA+ +
Sbjct: 712 QIPKTFWSYAIKHAVHIINRLPTRFLKQKSPFEMIYHHKPDLHDLRVFGCLAYASTLAAG 771
Query: 875 KHKFAARSIKCVFMGFHQGTKGYRLYDLDTNQFLISRDVHFCDHFFPFLQXXXXXXXXXX 1054
+ K A R+ KC+F+G+ GTKGY LY+L + F +SR+V F + FP+
Sbjct: 772 RTKLAPRASKCIFLGYKSGTKGYVLYNLHSRFFSLSRNVIFHETVFPYSDFHKFSSNSDA 831
Query: 1055 XXXXXXXXXXXXXXXXXXXXXXXIT---------PLSPTLL-----PRRSSRVVQPPVWM 1192
T PL+ + PR S+R P ++
Sbjct: 832 ILTESTNDFAHYELYPITVLETTNTHTPSEQLQQPLTEEMQDIPVQPRVSTRQKFRPNYL 891
Query: 1193 KDYVSNSCSILVXXXXXXXXXISLAGAHYPIPTFPDVTSPSLSAGYMAFLANISGIHEPH 1372
Y S + S + YP+ ++ ++ S+ Y AF +IS EP
Sbjct: 892 NQYHCYSATS------------SNSACLYPLHSY--LSYNKCSSNYTAFCLSISAHVEPS 937
Query: 1373 HYSEACKDINWIDAMNKELEALEKNATWDLTFLPDGKKAIGCKWVYKVKLHPDGSIDRYK 1552
+Y++A W AM EL+AL +N TW L LP G+K IGCKWVY++K DGS+DR+K
Sbjct: 938 NYAQAITQDCWKQAMMTELDALNRNRTWSLVSLPPGRKLIGCKWVYRIKYKADGSVDRHK 997
Query: 1553 ARLVAKGYHQVYGLDYLDSFSPVAKLVTVRMFIAVAIYKGWDIQQLDINNAFLHGFLDEE 1732
ARLVAKG+ Q G+DY ++FSPVAKL TVR +A+A W + QLD++NAFLHG L+EE
Sbjct: 998 ARLVAKGFTQTEGIDYFETFSPVAKLTTVRFLLALASTNNWFLHQLDVDNAFLHGDLEEE 1057
Query: 1733 IYMVPPDGYHKAAPGQVCRLKRSLYGLKQASRQWNVELCKKLIEFGLTQSQNDHCLFFKK 1912
+YM PP G VC+L++SLYGLKQASR WN +L +L+ G QS DH LF KK
Sbjct: 1058 VYMRPPQGLQLPDSKLVCKLEKSLYGLKQASRNWNQKLNSELLHLGYKQSSADHSLFIKK 1117
Query: 1913 TDTSYLALLIYVDDVLITGSAQADISALKHYLDKMFTIKDMGHAKYFLGLEIARGSDGVY 2092
+S LL+YVDDV+++G+ ++I +K +L + F IKD+G K+FLGLE+AR G+
Sbjct: 1118 QGSSITILLVYVDDVVLSGNNFSEIQIVKQHLHQKFQIKDLGPLKFFLGLEVARSKKGII 1177
Query: 2093 LNQRKYILDLLHDTGLSDCKPAKLPFPSGLKLTGKAGEPLQHPDAYRRLVGRLLYLNLTR 2272
LNQRKY L+L+ ++GL KPA P +KL G L P ++RRL+GRLLYL TR
Sbjct: 1178 LNQRKYCLELIDESGLLGSKPAPTPADPAIKLHADHGSLLNDPTSFRRLIGRLLYLTNTR 1237
Query: 2273 ADITYCVQQLSQFVNDPYSSHWEAAVHVLKYLKGCPSKGLFYSSHGRFELMAYSDADWAS 2452
DI++ VQQLSQFV+ P H +AA+ +++YLKG P GLFY + + A+SD+DWA+
Sbjct: 1238 PDISFSVQQLSQFVSQPREPHLQAALRIVRYLKGAPGLGLFYPAENHLRIQAFSDSDWAT 1297
Query: 2453 CPDTRRSLTGYCVFLGSSLISWKTKKQCTVSKSSAEAEYRALSTTVCELQWLAHLALDFC 2632
C TR+S+TGYCVFLG SL+SWK+KKQ TVS+SS+EAEYRAL++ CELQWL L+
Sbjct: 1298 CSTTRKSVTGYCVFLGKSLVSWKSKKQSTVSRSSSEAEYRALASLTCELQWLKFLSDSLF 1357
Query: 2633 IQVPTPISLWCDNQAALHIVANPVFHERTKHLEIDCHIVRNQFKAGFILPQKVSSSLQLA 2812
+++P P S++ D+Q+A+ I NP FHERTKH+E+DCH++R + + + V S+ QLA
Sbjct: 1358 VKIPAPFSVFSDSQSAIQIAKNPTFHERTKHIEVDCHLIRIKLQEELLHLIHVPSANQLA 1417
Query: 2813 DIFTKSLGQQVFDGLLVKLGMKDLH 2887
D FTKSL ++F + KLG+ ++H
Sbjct: 1418 DAFTKSLYPKLFLHAISKLGLSNIH 1442
Score = 167 bits (424), Expect = 4e-38
Identities = 121/504 (24%), Positives = 224/504 (44%), Gaps = 14/504 (2%)
Frame = +1
Query: 3298 DPFQLHGSDHPGLLLVSVQLTGNNYLSWSRSMGIALGAKTKLGFVDGTIAMPKADTAEYD 3477
+P LH ++P L+LV+ L+ NN+ W M +AL K K FV GT+ P +
Sbjct: 18 NPLFLHPGENPALILVTPLLSDNNFPQWKHDMLVALETKNKDQFVLGTLTCPNLSDPLHK 77
Query: 3478 QWRRVDLMVTSWILNTIAKDIVDAFLYVKSARELWEDIAQRFGECNGTVLYQLQKDIVNL 3657
W R + MV SW+ +++ I + ++++SA E+W D+ RF + + LQ+++ N
Sbjct: 78 AWCRCNKMVMSWLAHSMTPSIRQSVMWIESASEIWRDLCDRFSHGDKFRIADLQEELQNC 137
Query: 3658 TQGLNSVAVYFTKLKKLWDEYGSLAPAFTCKCGNNKASVDLENITK------LNQFLMGL 3819
QG +V+ Y+T+L+ LW E C C + I K + +FL GL
Sbjct: 138 KQGELTVSQYYTRLRILWKELSIYRTVLACSCPVACSCGIFSKIQKERDDDCVIKFLRGL 197
Query: 3820 NDSYDHIRSQILIMDPLPTVNKAYSMVQRVERQRSVSI-NVGEGTDGVALMTRNMSGSPA 3996
ND + +RSQ+++M+P+P + + +S+V + ER+ + + + + +A + + + +
Sbjct: 198 NDEFSQVRSQVMLMEPMPGLTRTFSLVLQQEREFGGPVPPIPQESAALATFNDDSARNNS 257
Query: 3997 SVGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKLTCEHCRAPGHEMSECFKLHGYPD 4176
S G + C C+ H + CF+++G+P
Sbjct: 258 STRGG-----------FSNTRGGGRSGRGNNTGRSTRFCTKCKKTNHTIDTCFQIYGFPP 306
Query: 4177 WFK------DLKEQRRRNSVNMVGDSGHLPGEVAQTQPKKDSAGDMAALIQQEIAKYLAN 4338
++ ++SVN + L V+ T K D ++ +Y A
Sbjct: 307 GYRTNGKSTSTTSNTSKSSVNNFDSTTSL---VSATSAKDDVTSQNTFNFSKD--QYQAL 361
Query: 4339 TGGVDKSGGNGVNMNYAHFVDYAGTDMIHDNYCALSTFD-ESSRHNWIIDTGASKHMCYN 4515
G + +S ++N AH C++ST + +WI+D+GA+ H+C +
Sbjct: 362 LGLLQQSQDPSPSVNSAH-------------KCSVSTPGINLFQSSWILDSGATDHICPS 408
Query: 4516 EQLLTDLHPVHTKTNIYLPDGSTKHVEYTGKAHITXXXXXXXXXXXPSFSYNLLSVAQLT 4695
+ + L P+ ++ LP+ + Y+G H+ P FS +L+S+ +L
Sbjct: 409 KSYFSSLIPI-KPVSVKLPNNQSVFACYSGTIHL-GNLTLYNALYVPDFSVHLISIPKLV 466
Query: 4696 ESSNLKFIFFPTHCVLQDLKTDKV 4767
+ N IF C++ T K+
Sbjct: 467 TTLNCIVIFCEYDCIIVQRHTFKM 490
>dbj|BAB10503.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1475
Score = 761 bits (1965), Expect = 0.0
Identities = 413/969 (42%), Positives = 577/969 (59%), Gaps = 9/969 (0%)
Frame = +2
Query: 14 DKVVAVGKAQGRLYILHPKSSVQSSFPLIXXXXXXXXXXXXXXELLNWHVKLGHPSIS-- 187
++ + G G LY+L SSV+ + I + WH +LGHPS
Sbjct: 540 EQKIGRGNQIGGLYVLDT-SSVECTSVDINSSVTEKQYCNAVVDSALWHSRLGHPSYEKN 598
Query: 188 -VLEHISCLKPFCTAANKKAIEACDVCHRSKQHRLSFPVSTSRATECFELIHVDVWGPFS 364
VL + L NK+ + C +C ++KQ LSFP + + F+LIH+D WGPF+
Sbjct: 599 DVLHDVLGLPK----RNKEDLVHCSICQKAKQKHLSFPSKNNMSENKFDLIHIDTWGPFA 654
Query: 365 HGYTSHNPYMLTVVDDYSRATWTYFLAHKSQVTQTLESFFCMVKTQFDKKVREVRSDNGG 544
T Y LT+VDDYSRATW Y + K+ V Q F MV+TQ+ V+ VRSDN
Sbjct: 655 TPTTEGYKYFLTIVDDYSRATWVYLMKAKNDVLQIFPDFLKMVETQYGTLVKAVRSDNAP 714
Query: 545 EFVNHSLQQLFVSLGILHQRSCVYTPQQNGVVERKHRTLLNLGRALMFQSGLPIKFWIYA 724
E + L+ + GI+ SC TPQQN VVERKH+ +LN+ RALMF++ +P++FW
Sbjct: 715 EL---RFEALYQAKGIISYHSCPETPQQNSVVERKHQHILNVARALMFEANMPLEFWGDC 771
Query: 725 LMYATYIVNRLPSVVLGWETPYELLFGKAPAYDTLKPFGCLVYAANTSPHKHKFAARSIK 904
++ A +++NRLP+ +L ++P+ELL K P Y +LK FGCL Y + + +HKFA R+
Sbjct: 772 ILSAVFLINRLPTPLLSNKSPFELLHLKVPDYTSLKVFGCLCYESTSPQQRHKFAPRARA 831
Query: 905 CVFMGFHQGTKGYRLYDLDTNQFLISRDVHFCDHFFPFLQXXXXXXXXXXXXXXXXXXXX 1084
CVF+G+ G KGY+L DL+TN ISR V F + FPF
Sbjct: 832 CVFLGYPSGYKGYKLLDLETNTIHISRHVVFYETVFPFTDKTIIPRDVFDLVDPVHENIE 891
Query: 1085 XXXXXXXXXXXXXITPLSPTLLPRRSSRVVQPPVWMKDYVSNSCSILVXXXXXXXXXISL 1264
+ +P + +R SR PP +++DY N+ +
Sbjct: 892 NPPST---------SESAPKVSSKRESR---PPGYLQDYFCNAVPDVTKD---------- 929
Query: 1265 AGAHYPIPTFPDVTSPSLSAGYMAFLANISGIHEPHHYSEACKDINWIDAMNKELEALEK 1444
YP+ + + T LS + A++ ++ EP Y++A K W+DAM E++ALE
Sbjct: 930 --VRYPLNAYINYTQ--LSEEFTAYICAVNKYPEPCTYAQAKKIKEWLDAMEIEIDALES 985
Query: 1445 NATWDLTFLPDGKKAIGCKWVYKVKLHPDGSIDRYKARLVAKGYHQVYGLDYLDSFSPVA 1624
TW + LP GKK IGCKWV+KVKL+ DGS++R+KARLVAKGY Q GLDY D+FSPVA
Sbjct: 986 TNTWSVCSLPQGKKPIGCKWVFKVKLNADGSLERFKARLVAKGYTQREGLDYYDTFSPVA 1045
Query: 1625 KLVTVRMFIAVAIYKGWDIQQLDINNAFLHGFLDEEIYMVPPDGYHKAAPG-----QVCR 1789
K+ TV+ ++VA K W + QLDI+NAFL+G L EEIYM P GY G V +
Sbjct: 1046 KMTTVKTLLSVAAIKEWSLHQLDISNAFLNGDLKEEIYMTLPPGYSMKQGGVLPQNPVLK 1105
Query: 1790 LKRSLYGLKQASRQWNVELCKKLIEFGLTQSQNDHCLFFKKTDTSYLALLIYVDDVLITG 1969
L++SLYGLKQASRQW ++ L + G +S DH LF + + +Y+ALL+YVDD++I G
Sbjct: 1106 LQKSLYGLKQASRQWYLKFSSTLKKLGFKKSHADHTLFTRISGKAYIALLVYVDDIVIAG 1165
Query: 1970 SAQADISALKHYLDKMFTIKDMGHAKYFLGLEIARGSDGVYLNQRKYILDLLHDTGLSDC 2149
+ +I LK L K F ++D+G KYFLGLEIAR +G+ + QRKY ++LL DTGL C
Sbjct: 1166 NNDENIEELKKDLAKAFKLRDLGPMKYFLGLEIARTKEGISVCQRKYTMELLEDTGLLGC 1225
Query: 2150 KPAKLPFPSGLKLTGKAGEP-LQHPDAYRRLVGRLLYLNLTRADITYCVQQLSQFVNDPY 2326
+P+ +P LKL+ E + +P+ YRRLVG+L+YL +TR DITY + +L QF + P
Sbjct: 1226 RPSTIPMEPSLKLSQHNDEHVIDNPEVYRRLVGKLMYLTITRPDITYAINRLCQFSSSPK 1285
Query: 2327 SSHWEAAVHVLKYLKGCPSKGLFYSSHGRFELMAYSDADWASCPDTRRSLTGYCVFLGSS 2506
+SH +AA V+ YLKG GLFYSS L AY+DADW SC D+RRS +G C+FLG S
Sbjct: 1286 NSHLKAAQKVVHYLKGTIGLGLFYSSKSDLCLKAYTDADWGSCVDSRRSTSGICMFLGDS 1345
Query: 2507 LISWKTKKQCTVSKSSAEAEYRALSTTVCELQWLAHLALDFCIQVPTPISLWCDNQAALH 2686
LISWK+KKQ S SSAE+EYRA++ E+ WL L +F ++ P+ L+CD+ AA+H
Sbjct: 1346 LISWKSKKQNMASSSSAESEYRAMAMGSREIAWLVKLLAEFQVKQTKPVPLFCDSTAAIH 1405
Query: 2687 IVANPVFHERTKHLEIDCHIVRNQFKAGFILPQKVSSSLQLADIFTKSLGQQVFDGLLVK 2866
I N VFHERTKH+E DCHI R++ + G + V ++ QLAD+ TK L +F+ L+ K
Sbjct: 1406 IANNAVFHERTKHIENDCHITRDRIEQGMLKTMHVDTTSQLADVLTKPLFPTLFNSLIGK 1465
Query: 2867 LGMKDLHNS 2893
+ + ++ S
Sbjct: 1466 MSLLSIYGS 1474
Score = 198 bits (503), Expect = 2e-47
Identities = 150/506 (29%), Positives = 224/506 (44%), Gaps = 17/506 (3%)
Frame = +1
Query: 3301 PFQLHGSDHPGLLLVSVQLTGNNYLSWSRSMGIALGAKTKLGFVDGTIAMPKADTAEYDQ 3480
PF L D PG LVS L G N+ SW +M ++L AK K+ FVDGT+ P +
Sbjct: 63 PFALSNGDSPGNTLVSEVLDGTNFSSWKIAMFVSLYAKNKIAFVDGTLPRPPESDPSFRV 122
Query: 3481 WRRVDLMVTSWILNTIAKDIVDAFLYVKSARELWEDIAQRFGECNGTVLYQLQKDIVNLT 3660
W R + MV SWILN++ K I + L A E+W+D+ RF N YQL + I +L
Sbjct: 123 WSRCNSMVKSWILNSVTKQIYKSILRFNDAAEIWKDLDTRFHITNLPRSYQLTQQIWSLQ 182
Query: 3661 QGLNSVAVYFTKLKKLWDEYGSLAPAFTCK-CGNNKASVDLENITKLNQFLMGLNDSYDH 3837
QG S++ Y+T LK LWD+ + TCK C A+ + +K+ +FL GLN+SY
Sbjct: 183 QGTMSLSDYYTALKTLWDDLDGASCVSTCKNCTCCIATASMIEHSKIVKFLSGLNESYST 242
Query: 3838 IRSQILIMDPLPTVNKAYSMVQRVERQRSVSINVGEGTDGVALMTRNMSGSPASVGRGXX 4017
IRSQI++ +P + + Y+++ + QR+ + M N S S +
Sbjct: 243 IRSQIIMKKTIPDLAEIYNLLDQDHSQRN-----------IVTMPTNASTFNVSAPQS-- 289
Query: 4018 XXXXXXXXXXXXXXXXXXXXXXXXXXXAKLTCEHCRAPGHEMSECFKLHGYPDWFKDLKE 4197
K+ C HC GH C+K+HGYP FK +
Sbjct: 290 -----------DQFAVNLAKSFGTQPKPKVQCSHCGYTGHNADTCYKIHGYPVGFKHKDK 338
Query: 4198 QR---RRNSVNMVGDSGHLPGEVAQTQ-----PKKDSAGDMA-ALIQQEIAKYLANTGGV 4350
+ ++V + G+V+ TQ + G M+ + IQ IA +
Sbjct: 339 KTVTPSEKPKSVVANLALTDGKVSVTQGIGPDGIVELVGSMSKSQIQDVIAYFSTQLHNP 398
Query: 4351 DK-----SGGNGVNMNYAHFVDYAGTDMIHDNYCALSTFDE-SSRHNWIIDTGASKHMCY 4512
K S + N N + F + + C+L++ + S + WIID+GA+ H+ Y
Sbjct: 399 AKPITVASFASTNNDNGSTFTGISFSPSTLRLLCSLTSSKKVLSLNTWIIDSGATHHVSY 458
Query: 4513 NEQLLTDLHPVHTKTNIYLPDGSTKHVEYTGKAHITXXXXXXXXXXXPSFSYNLLSVAQL 4692
+ L L + LP GS + G + P F NLLSV+Q
Sbjct: 459 DRNLFESLSD-GLSNEVTLPTGSNVKIAGIGVIKLNSNLTLKNVLYIPEFRLNLLSVSQQ 517
Query: 4693 TESSNLKFIFFPTHCVLQD-LKTDKV 4767
T+ K F CV+QD +K K+
Sbjct: 518 TKDMKCKIYFDEDCCVIQDPIKEQKI 543
>gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1454
Score = 735 bits (1898), Expect = 0.0
Identities = 389/924 (42%), Positives = 554/924 (59%), Gaps = 14/924 (1%)
Frame = +2
Query: 155 WHVKLGHPSISVLEHISCLKPFCTAANKKAIEACDVCHRSKQHRLSFPVSTSRATECFEL 334
WH +LGH S+ L+ IS T K + C VCH +KQ +LSFP S E F+L
Sbjct: 558 WHRRLGHASLQRLDAISDSLG-TTRHKNKGSDFCHVCHLAKQRKLSFPTSNKVCKEIFDL 616
Query: 335 IHVDVWGPFSHGYTSHNPYMLTVVDDYSRATWTYFLAHKSQVTQTLESFFCMVKTQFDKK 514
+H+DVWGPFS Y LT+VDD+SRATW Y L KS+V +F V+ Q+ K
Sbjct: 617 LHIDVWGPFSVETVEGYKYFLTIVDDHSRATWMYLLKTKSEVLTVFPAFIQQVENQYKVK 676
Query: 515 VREVRSDNGGEFVNHSLQQLFVSLGILHQRSCVYTPQQNGVVERKHRTLLNLGRALMFQS 694
V+ VRSDN E + GI+ SC TP+QN VVERKH+ +LN+ RALMFQS
Sbjct: 677 VKAVRSDNAPEL---KFTSFYAEKGIVSFHSCPETPEQNSVVERKHQHILNVARALMFQS 733
Query: 695 GLPIKFWIYALMYATYIVNRLPSVVLGWETPYELLFGKAPAYDTLKPFGCLVYAANTSPH 874
+P+ W ++ A +++NR PS +L +TPYE+L G AP Y+ L+ FGCL Y++ +
Sbjct: 734 QVPLSLWGDCVLTAVFLINRTPSQLLMNKTPYEILTGTAPVYEQLRTFGCLCYSSTSPKQ 793
Query: 875 KHKFAARSIKCVFMGFHQGTKGYRLYDLDTNQFLISRDVHFCDHFFPFLQXXXXXXXXXX 1054
+HKF RS C+F+G+ G KGY+L DL++N ISR+V F + FP +
Sbjct: 794 RHKFQPRSRACLFLGYPSGYKGYKLMDLESNTVFISRNVQFHEEVFPLAKNPGSESSLKL 853
Query: 1055 XXXXXXXXXXXXXXXXXXXXXXXITPLSPTLLPRR---------SSRVVQPPVWMKDYVS 1207
T SP+ LP + S RV +PP + DY
Sbjct: 854 FTPMVPVSSGIISD----------TTHSPSSLPSQISDLPPQISSQRVRKPPAHLNDYHC 903
Query: 1208 NSCSILVXXXXXXXXXISLAGAHYPIPTFPDVTSPSLSAGYMAFLANISGIHEPHHYSEA 1387
N+ + YPI + ++ +S +M ++ NI+ I P +Y+EA
Sbjct: 904 NTMQ---------------SDHKYPISS--TISYSKISPSHMCYINNITKIPIPTNYAEA 946
Query: 1388 CKDINWIDAMNKELEALEKNATWDLTFLPDGKKAIGCKWVYKVKLHPDGSIDRYKARLVA 1567
W +A++ E+ A+EK TW++T LP GKKA+GCKWV+ +K DG+++RYKARLVA
Sbjct: 947 QDTKEWCEAVDAEIGAMEKTNTWEITTLPKGKKAVGCKWVFTLKFLADGNLERYKARLVA 1006
Query: 1568 KGYHQVYGLDYLDSFSPVAKLVTVRMFIAVAIYKGWDIQQLDINNAFLHGFLDEEIYMVP 1747
KGY Q GLDY D+FSPVAK+ T+++ + V+ K W ++QLD++NAFL+G L+EEI+M
Sbjct: 1007 KGYTQKEGLDYTDTFSPVAKMTTIKLLLKVSASKKWFLKQLDVSNAFLNGELEEEIFMKI 1066
Query: 1748 PDGYHKAA-----PGQVCRLKRSLYGLKQASRQWNVELCKKLIEFGLTQSQNDHCLFFKK 1912
P+GY + V RLKRS+YGLKQASRQW + L+ G ++ DH LF K
Sbjct: 1067 PEGYAERKGIVLPSNVVLRLKRSIYGLKQASRQWFKKFSSSLLSLGFKKTHGDHTLFLKM 1126
Query: 1913 TDTSYLALLIYVDDVLITGSAQADISALKHYLDKMFTIKDMGHAKYFLGLEIARGSDGVY 2092
D ++ +L+YVDD++I +++A + L LD+ F ++D+G KYFLGLE+AR + G+
Sbjct: 1127 YDGEFVIVLVYVDDIVIASTSEAAAAQLTEELDQRFKLRDLGDLKYFLGLEVARTTAGIS 1186
Query: 2093 LNQRKYILDLLHDTGLSDCKPAKLPFPSGLKLTGKAGEPLQHPDAYRRLVGRLLYLNLTR 2272
+ QRKY L+LL TG+ CKP +P LK+ G+ ++ + YRR+VG+L+YL +TR
Sbjct: 1187 ICQRKYALELLQSTGMLACKPVSVPMIPNLKMRKDDGDLIEDIEQYRRIVGKLMYLTITR 1246
Query: 2273 ADITYCVQQLSQFVNDPYSSHWEAAVHVLKYLKGCPSKGLFYSSHGRFELMAYSDADWAS 2452
DIT+ V +L QF + P ++H AA VL+Y+KG +GLFYS+ L ++D+DWAS
Sbjct: 1247 PDITFAVNKLCQFSSAPRTTHLTAAYRVLQYIKGTVGQGLFYSASSDLTLKGFADSDWAS 1306
Query: 2453 CPDTRRSLTGYCVFLGSSLISWKTKKQCTVSKSSAEAEYRALSTTVCELQWLAHLALDFC 2632
C D+RRS T + +F+G SLISW++KKQ TVS+SSAEAEYRAL+ CE+ WL L +
Sbjct: 1307 CQDSRRSTTSFTMFVGDSLISWRSKKQHTVSRSSAEAEYRALALATCEMVWLFTLLVSLQ 1366
Query: 2633 IQVPTPISLWCDNQAALHIVANPVFHERTKHLEIDCHIVRNQFKAGFILPQKVSSSLQLA 2812
P PI L+ D+ AA++I NPVFHERTKH+++DCH VR + G + V + Q+A
Sbjct: 1367 ASPPVPI-LYSDSTAAIYIATNPVFHERTKHIKLDCHTVRERLDNGELKLLHVRTEDQVA 1425
Query: 2813 DIFTKSLGQQVFDGLLVKLGMKDL 2884
DI TK L F+ L K+ + ++
Sbjct: 1426 DILTKPLFPYQFEHLKSKMSILNI 1449
Score = 179 bits (455), Expect = 8e-42
Identities = 133/506 (26%), Positives = 214/506 (42%), Gaps = 12/506 (2%)
Frame = +1
Query: 3271 MTAKEAKE--EDPFQLHGSDHPGLLLVSVQLTGNNYLSWSRSMGIALGAKTKLGFVDGTI 3444
+T+ E+ + + PF LH +DHPGL ++S +L NY WS +M I+L AK K GF+DGT+
Sbjct: 49 LTSSESGDPTQSPFFLHSADHPGLNIISHRLDETNYGDWSVAMLISLDAKNKTGFIDGTL 108
Query: 3445 AMPKADTAEYDQWRRVDLMVTSWILNTIAKDIVDAFLYVKSARELWEDIAQRFGECNGTV 3624
+ P + W R + MV SW+LN+++ I + L + A ++W D+ RF N
Sbjct: 109 SRPLESDLNFRLWSRCNSMVKSWLLNSVSPQIYRSILRMNDASDIWRDLNSRFNVTNLPR 168
Query: 3625 LYQLQKDIVNLTQGLNSVAVYFTKLKKLWDEYGSL-APAFTCKCGNNKASVDLENITKLN 3801
Y L ++I + QG S++ Y+T+LK LWD+ S A C CG K+
Sbjct: 169 TYNLTQEIQDFRQGTLSLSEYYTRLKTLWDQLDSTEALDEPCTCGKAMRLQQKAEQAKIV 228
Query: 3802 QFLMGLNDSYDHIRSQILIMDPLPTVNKAYSMVQRVERQRSVSINVGEGTDGVALMTRNM 3981
+FL GLN+SY +R QI+ LP++ + Y ++ + Q+S S V A +
Sbjct: 229 KFLAGLNESYAIVRRQIIAKKALPSLGEVYHILDQDNSQQSFSNVV---APPAAFQVSEI 285
Query: 3982 SGSPASVGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKLTCEHCRAPGHEMSECFKL 4161
+ SP+ + C GH C+K
Sbjct: 286 TQSPS--------------------MDPTVCYVQNGPNKGRPICSFYNRVGHIAERCYKK 325
Query: 4162 HGYPDWFKDLKEQRRRNSVNMVGDSGHLPGEVAQTQPKKDSAGDMAA-----LIQQEIAK 4326
HG+P F + + + L VA++ S M +QQ IA
Sbjct: 326 HGFPPGFTP-----KGKAGEKLQKPKPLAANVAESSEVNTSLESMVGNLSKEQLQQFIAM 380
Query: 4327 YLANTGGVDKSGGNGVNMNYAHFVDYAGTDMIHDNYCALSTFDES----SRHNWIIDTGA 4494
+ + S + + + D G Y + + S W+ID+GA
Sbjct: 381 FSSQLQNTPPSTYATASTSQS---DNLGICFSPSTYSFIGILTVARHTLSSATWVIDSGA 437
Query: 4495 SKHMCYNEQLLTDLHPVHTKTNIYLPDGSTKHVEYTGKAHITXXXXXXXXXXXPSFSYNL 4674
+ H+ ++ L + L + + LP G T + G + P F NL
Sbjct: 438 THHVSHDRSLFSSL-DTSVLSAVNLPTGPTVKISGVGTLKLNDDILLKNVLFIPEFRLNL 496
Query: 4675 LSVAQLTESSNLKFIFFPTHCVLQDL 4752
+S++ LT+ + IF C +QDL
Sbjct: 497 ISISSLTDDIGSRVIFDKNSCEIQDL 522
>gb|KYP40677.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 810
Score = 689 bits (1779), Expect = 0.0
Identities = 364/825 (44%), Positives = 508/825 (61%), Gaps = 8/825 (0%)
Frame = +2
Query: 440 LAHKSQVTQTLESFFCMVKTQFDKKVREVRSDNGGEFVNHSLQQLFVSLGILHQRSCVYT 619
+ +K++V L++F + + QF K++++RSDNG EF+ L+ F + GILH+ SCV T
Sbjct: 1 MKNKTEVRSILQNFILLTENQFSCKLKKLRSDNGKEFI---LKDFFNTKGILHETSCVET 57
Query: 620 PQQNGVVERKHRTLLNLGRALMFQSGLPIKFWIYALMYATYIVNRLPSVVLGWETPYELL 799
PQQNG+VERKH+ +LN+ R+L+FQS +P FW +A+ +A +I+NRLP+ L ++P+E++
Sbjct: 58 PQQNGIVERKHQHILNVCRSLLFQSKVPKSFWSFAIKHAVHIINRLPTPFLNNKSPFEMI 117
Query: 800 FGKAPAYDTLKPFGCLVYAANTSPHKHKFAARSIKCVFMGFHQGTKGYRLYDLDTNQFLI 979
F + P LK FGCL Y + S ++K R+ KC+F+GF GTKG+ L++L + L+
Sbjct: 118 FNQKPNLHDLKTFGCLAYVSTLSGGRNKLEPRAHKCIFLGFKTGTKGFVLFNLHSKSILL 177
Query: 980 SRDVHFCDHFFPFLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITPLSPTLLPRR 1159
SR F FP++ P S
Sbjct: 178 SRHAIFHQTVFPYINVFDNQSNSNIVPISNDNIFQPYDFFPSYSDHLTNNPNSIENASNN 237
Query: 1160 SSRVVQ-PPVWMKDYVSNSCSILVXXXXXXXXXISLAGAHYP-----IPTFPDVTSPSLS 1321
Q PP+ M S S I +SL P + V+S S S
Sbjct: 238 FENHTQDPPIEM----SQSIPIETGQIQPITTRVSLRSKSRPGYLDQYHCYNTVSSDSTS 293
Query: 1322 AGYMAFLANISGIHEPHHY--SEACKDINWIDAMNKELEALEKNATWDLTFLPDGKKAIG 1495
+ ++ H Y EA W AM EL+ALE+N TW L LP GKK IG
Sbjct: 294 ----------NSLYPMHLYIFKEASTKDCWKQAMIAELDALERNRTWSLVTLPPGKKLIG 343
Query: 1496 CKWVYKVKLHPDGSIDRYKARLVAKGYHQVYGLDYLDSFSPVAKLVTVRMFIAVAIYKGW 1675
CKWVY+ K +G+++RYKARLVAKG+ Q G+DY ++FSPVAK+ ++R +A+A W
Sbjct: 344 CKWVYRTKHKANGTVERYKARLVAKGFTQTEGIDYFETFSPVAKITSIRFLLALASSHNW 403
Query: 1676 DIQQLDINNAFLHGFLDEEIYMVPPDGYHKAAPGQVCRLKRSLYGLKQASRQWNVELCKK 1855
I QLDI+NAFLHG LDEE+YM PP G + VC+L++SLYGLKQASR WN +L +
Sbjct: 404 FIHQLDIDNAFLHGDLDEEVYMRPPQGLRLPSSKLVCKLEKSLYGLKQASRNWNQKLTSE 463
Query: 1856 LIEFGLTQSQNDHCLFFKKTDTSYLALLIYVDDVLITGSAQADISALKHYLDKMFTIKDM 2035
L G QS DH LF T +S LLIYVDD++++G+ +I +K +L F IKD+
Sbjct: 464 LTLMGYKQSFADHSLFVNFTGSSITILLIYVDDIVLSGNDMTEIKKVKAHLHNKFHIKDL 523
Query: 2036 GHAKYFLGLEIARGSDGVYLNQRKYILDLLHDTGLSDCKPAKLPFPSGLKLTGKAGEPLQ 2215
G K+FLGLE+AR G+ LNQRKY L+L+ +TGL CKPA P +KL G+ L
Sbjct: 524 GSLKFFLGLEVARSKKGILLNQRKYCLELIDETGLLGCKPAPTPADPAMKLHVDHGDLLH 583
Query: 2216 HPDAYRRLVGRLLYLNLTRADITYCVQQLSQFVNDPYSSHWEAAVHVLKYLKGCPSKGLF 2395
P +RRL+GRLLYL TR DI++ VQQLSQFV+ P H +AA+ +++YLKG P GLF
Sbjct: 584 DPTVFRRLIGRLLYLTNTRPDISFSVQQLSQFVSKPREPHMQAALRIVRYLKGAPGLGLF 643
Query: 2396 YSSHGRFELMAYSDADWASCPDTRRSLTGYCVFLGSSLISWKTKKQCTVSKSSAEAEYRA 2575
YSS ++ A+SD+DWA+C TRRS+TGYCVF+G+SLISWK+KKQ TVS+SS+EAEYRA
Sbjct: 644 YSSTNPLKIQAFSDSDWATCATTRRSVTGYCVFIGNSLISWKSKKQSTVSRSSSEAEYRA 703
Query: 2576 LSTTVCELQWLAHLALDFCIQVPTPISLWCDNQAALHIVANPVFHERTKHLEIDCHIVRN 2755
L++ CELQWL +L I++PTP + + D+Q+A+ I NP FHERTKH+E+DCH++R
Sbjct: 704 LASLTCELQWLKYLCDSMHIKIPTPFATFSDSQSAIQISKNPTFHERTKHIEVDCHLIRI 763
Query: 2756 QFKAGFILPQKVSSSLQLADIFTKSLGQQVFDGLLVKLGMKDLHN 2890
+ + G + V S+ QLAD FTK+L + F + KLG+ ++++
Sbjct: 764 KIQEGLLHLIHVLSANQLADAFTKALFPKPFHTAISKLGLLNIYH 808
>ref|XP_012486681.1| PREDICTED: LOW QUALITY PROTEIN: retrovirus-related Pol polyprotein
from transposon TNT 1-94 [Gossypium raimondii]
Length = 683
Score = 623 bits (1606), Expect = 0.0
Identities = 324/705 (45%), Positives = 443/705 (62%), Gaps = 17/705 (2%)
Frame = +2
Query: 827 LKPFGCLVYAANTSPHKHKFAARSIKCVFMGFHQGTKGYRLYDLDTNQFLISRDVHFCDH 1006
L+ FGCL +A+ S H+ KF R+ +CVF+G+ KGY L D++T +SR+V F +
Sbjct: 2 LRIFGCLSFASTLSAHRKKFDPRAKQCVFLGYKPHVKGYILLDIETRAIFVSRNVTFHET 61
Query: 1007 FFPFLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITPLS-PTLLPRRSSRVVQ-- 1177
FPFLQ + S P P SSR +
Sbjct: 62 IFPFLQHSLNNPTTPVGLLASDTIYDSPISPPQPSSTDQSSSTSHPPTQPSTSSRPQRNR 121
Query: 1178 -PPVWMKDYVSNSCSILVXXXXXXXXXISLAGAHYPIPT-----------FPDVTSPSLS 1321
PP +++DY HY +P F ++ +LS
Sbjct: 122 RPPSYLQDY-----------------------QHYQLPAATNHPGTPHSIFNCISYHNLS 158
Query: 1322 AGYMAFLANISGIHEPHHYSEACKDINWIDAMNKELEALEKNATWDLTFLPDGKKAIGCK 1501
++ F IS EP Y +A K +W +AM E+ ALE+N TW +T LP GK GCK
Sbjct: 159 PQHLHFTLAISASIEPKTYKQASKFTHWNEAMQAEINALEQNNTWTMTTLPPGKTPXGCK 218
Query: 1502 WVYKVKLHPDGSIDRYKARLVAKGYHQVYGLDYLDSFSPVAKLVTVRMFIAVAIYKGWDI 1681
WV++VK DGS +RYKARLVAKGY Q+ G+DY D+FSPVAK+ TVR+ +A+A + W I
Sbjct: 219 WVFRVKHRADGSTERYKARLVAKGYTQI-GVDYFDTFSPVAKITTVRLLLALATSRHWHI 277
Query: 1682 QQLDINNAFLHGFLDEEIYMVPPDGYHKAAPGQVCRLKRSLYGLKQASRQWNVELCKKLI 1861
QQLD+NNAFLHG L+E++YM+PP G+ + +VC+L +S+YGLKQASRQW +L LI
Sbjct: 278 QQLDVNNAFLHGDLNEDVYMLPPPGFSHDST-KVCKLHKSIYGLKQASRQWFSKLTTALI 336
Query: 1862 EFGLTQSQNDHCLFFKKTDTSYLALLIYVDDVLITGSAQADISALKHYLDKMFTIKDMGH 2041
G QS DH +F KK + LLIYVDD+++TG++ +I +K +LD F IKD+G
Sbjct: 337 SLGYIQSTADHSMFTKKHSEDFTVLLIYVDDIILTGTSSPEIMKVKQFLDTTFRIKDLGD 396
Query: 2042 AKYFLGLEIARGSDGVYLNQRKYILDLLHDTGLSDCKPAKLPFP--SGLKLTGKAGEPLQ 2215
KYFLGLE+AR S G++++QRKY L++L ++G +CKPAK P S KLT GE L
Sbjct: 397 LKYFLGLEVARTSQGIHISQRKYALEILQESGFIECKPAKTPMATKSVYKLTSTDGELLS 456
Query: 2216 HPDAYRRLVGRLLYLNLTRADITYCVQQLSQFVNDPYSSHWEAAVHVLKYLKGCPSKGLF 2395
+YR+LVG+LLYL TR D+T+ VQQLSQF++ P ++H +AA VL+YLKGCPS GLF
Sbjct: 457 DITSYRQLVGKLLYLTSTRLDLTFAVQQLSQFMDKPTTNHLQAAHRVLRYLKGCPSTGLF 516
Query: 2396 YSSHGRFELMAYSDADWASCPDTRRSLTGYCVFLGSSLISWKTKKQCTVSKSSAEAEYRA 2575
Y + FEL A+SD+DWA CP+TRRS+TGYC+F G +LISW+ KKQ TVS+SS+EAEYRA
Sbjct: 517 YPASSSFELKAFSDSDWAGCPETRRSITGYCIFFGEALISWRAKKQPTVSRSSSEAEYRA 576
Query: 2576 LSTTVCELQWLAHLALDFCIQVPTPISLWCDNQAALHIVANPVFHERTKHLEIDCHIVRN 2755
L++TVCE+QWL +L D + + ++CDN++ + I +NP FHERTKH+EIDCHIVR
Sbjct: 577 LASTVCEVQWLHYLLCDLHVPISHATPVFCDNKSTIQIASNPTFHERTKHIEIDCHIVRE 636
Query: 2756 QFKAGFILPQKVSSSLQLADIFTKSLGQQVFDGLLVKLGMKDLHN 2890
+ + + +SS QLAD+FTK+L Q F ++ KLGM ++H+
Sbjct: 637 KLQKDIVHLLPCTSSAQLADLFTKALAAQPFQDMISKLGMLNIHS 681
>gb|KYP38774.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 727
Score = 589 bits (1518), Expect = 0.0
Identities = 323/734 (44%), Positives = 435/734 (59%), Gaps = 29/734 (3%)
Frame = +2
Query: 794 LLFGKAPAYDTLKPFGCLVYAANTSPHKHKFAARSIKCVFMGFHQGTKGYRLYDLDTNQF 973
+L+ ++P LK FGCL +A S +++K ++ K +F+G GTKGY + D+ T
Sbjct: 1 MLYDQSPTLLDLKVFGCLCFAGTLSQNRNKLDPKASKGIFLGIKHGTKGYLVMDISTRNI 60
Query: 974 LISRDVHF---------------CDH--------FFPFLQXXXXXXXXXXXXXXXXXXXX 1084
IS++V F DH +F F
Sbjct: 61 FISKNVLFYEDVFPFHNKVSASDLDHDMINTNNFYFLFADIHVSTHNTNINVISNDHNNN 120
Query: 1085 XXXXXXXXXXXXXITPLSPTLLPRRSSRVVQPPVWMKDYVSNSCSILVXXXXXXXXXISL 1264
+P + + +RS+R P ++ DY C++L
Sbjct: 121 INHHDESQVPLECNSPDATPTIIKRSTRTKYPLAYLTDY---HCNLLTGHDTSI-----F 172
Query: 1265 AGAHYPIPTFPDVTSPSLSAGYMAFLANISGIHEPHHYSE-ACKDINWIDAMNKELEALE 1441
A YP+ T ++ +LS + F IS + EP +Y E A K +WI AM EL+AL
Sbjct: 173 KDARYPLSTV--LSYSNLSPTHSHFTLIISSLIEPKNYLELAIKSEHWIKAMQNELDALR 230
Query: 1442 KNATWDLTFLPD-----GKKAIGCKWVYKVKLHPDGSIDRYKARLVAKGYHQVYGLDYLD 1606
N TW L LP GK IG KWVYK+K DG+I+RYKARLVAKGY+Q+ GLDY D
Sbjct: 231 LNRTWSLVNLPTVNLPTGKVPIGSKWVYKIKYKSDGTIERYKARLVAKGYNQIEGLDYFD 290
Query: 1607 SFSPVAKLVTVRMFIAVAIYKGWDIQQLDINNAFLHGFLDEEIYMVPPDGYHKAAPGQVC 1786
+F+PVAK+ TVRM +A+A + W++ QLDINNAFLHG L+EE+YM P G P VC
Sbjct: 291 TFAPVAKITTVRMLLAIASCQKWELHQLDINNAFLHGDLNEEVYMQIPQGLTSPKPNLVC 350
Query: 1787 RLKRSLYGLKQASRQWNVELCKKLIEFGLTQSQNDHCLFFKKTDTSYLALLIYVDDVLIT 1966
+L +SLYGLKQAS+QW +L L QS NDH LF K + + +L+YVDD++I
Sbjct: 351 KLHKSLYGLKQASKQWFAKLSNFLQTMNYKQSPNDHSLFTKHINNHFTLILVYVDDLIIG 410
Query: 1967 GSAQADISALKHYLDKMFTIKDMGHAKYFLGLEIARGSDGVYLNQRKYILDLLHDTGLSD 2146
G+ ++I ++K LD F IKD+GH KYFLGLE+AR G++L+QRKY LDLL DTG
Sbjct: 411 GTDSSEIVSIKGILDAQFKIKDLGHLKYFLGLEVARSHLGIHLSQRKYALDLLSDTGFLA 470
Query: 2147 CKPAKLPFPSGLKLTGKAGEPLQHPDAYRRLVGRLLYLNLTRADITYCVQQLSQFVNDPY 2326
KP P K + G P P YRRLVG+LLYL TR DI++ VQQLSQ ++ P
Sbjct: 471 AKPVPTPMVKTNKASQSDGTPYADPAGYRRLVGKLLYLTTTRPDISFAVQQLSQHISSPS 530
Query: 2327 SSHWEAAVHVLKYLKGCPSKGLFYSSHGRFELMAYSDADWASCPDTRRSLTGYCVFLGSS 2506
++H+ AA VL+YLKG P +GLFY + +L A+SD+DW SCP + RS++GYC+FLG S
Sbjct: 531 TAHYMAATRVLRYLKGNPGQGLFYPAQSPSQLKAFSDSDWGSCPTSCRSVSGYCIFLGDS 590
Query: 2507 LISWKTKKQCTVSKSSAEAEYRALSTTVCELQWLAHLALDFCIQVPTPISLWCDNQAALH 2686
LISWK KKQ T+S+SS+EAEYRAL+ TVCE+QWL +L DF I + L+CDNQ+A +
Sbjct: 591 LISWKCKKQSTISRSSSEAEYRALANTVCEIQWLTYLLHDFVIPFTSHALLYCDNQSARY 650
Query: 2687 IVANPVFHERTKHLEIDCHIVRNQFKAGFILPQKVSSSLQLADIFTKSLGQQVFDGLLVK 2866
I NPVFHERTKH+++DCHI+R + +A + S+ QLADI TK L F+ LL K
Sbjct: 651 IATNPVFHERTKHIDLDCHIIREKLQAKLFHLLPIRSTEQLADILTKPLEPTPFNYLLSK 710
Query: 2867 LGMKDLHNSPT*GG 2908
LG+ +++ SP GG
Sbjct: 711 LGVLNIY-SPACGG 723
>gb|KYP61299.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 515
Score = 575 bits (1481), Expect = 0.0
Identities = 287/509 (56%), Positives = 359/509 (70%)
Frame = +2
Query: 1364 EPHHYSEACKDINWIDAMNKELEALEKNATWDLTFLPDGKKAIGCKWVYKVKLHPDGSID 1543
EP ++ EA K +W+ AM++E+ ALE N TW LT LP K AIGC+WVYK K DGSID
Sbjct: 1 EPKNFVEASKSDSWLKAMHEEISALEANNTWVLTTLPPHKTAIGCRWVYKAKHKADGSID 60
Query: 1544 RYKARLVAKGYHQVYGLDYLDSFSPVAKLVTVRMFIAVAIYKGWDIQQLDINNAFLHGFL 1723
RYKARLVAKGY Q+ GLD+ D+FSPVAKL VR+ +++ W ++QLD+NN+FLHG L
Sbjct: 61 RYKARLVAKGYTQMEGLDFFDTFSPVAKLTIVRLLLSLVAIHNWHLKQLDVNNSFLHGDL 120
Query: 1724 DEEIYMVPPDGYHKAAPGQVCRLKRSLYGLKQASRQWNVELCKKLIEFGLTQSQNDHCLF 1903
+EE+YM P G + PGQVCRL+RSLYGLKQASRQW L LI+ G S +DH LF
Sbjct: 121 NEEVYMQLPPGITPSFPGQVCRLQRSLYGLKQASRQWYARLSSFLIQHGYVPSPSDHSLF 180
Query: 1904 FKKTDTSYLALLIYVDDVLITGSAQADISALKHYLDKMFTIKDMGHAKYFLGLEIARGSD 2083
K + + A+LIYVDD+++ G+ +I L L F IKD+G+ KYFLGLE+AR
Sbjct: 181 LKCSPATITAILIYVDDLVLAGNDLTEIHHLTSLLHNTFQIKDLGNLKYFLGLEVARNHT 240
Query: 2084 GVYLNQRKYILDLLHDTGLSDCKPAKLPFPSGLKLTGKAGEPLQHPDAYRRLVGRLLYLN 2263
G++L QRKY LDLL DTG+ KP P L +G PL AYRRLVGRL+YL
Sbjct: 241 GIHLCQRKYTLDLLSDTGMLASKPVSTPMDYSTHLFASSGTPLTDTAAYRRLVGRLIYLT 300
Query: 2264 LTRADITYCVQQLSQFVNDPYSSHWEAAVHVLKYLKGCPSKGLFYSSHGRFELMAYSDAD 2443
TR DITY VQQLSQFV +P ++H +A +L+YLKG P G+F S + +L A+SD+D
Sbjct: 301 NTRPDITYAVQQLSQFVTNPTTAHRQALFRILRYLKGTPGSGIFLSVNSSVQLRAFSDSD 360
Query: 2444 WASCPDTRRSLTGYCVFLGSSLISWKTKKQCTVSKSSAEAEYRALSTTVCELQWLAHLAL 2623
WA CPDTRRS+TG+ V+LG SLISWK+KKQ TVS+SS+EAEYRAL+TT CELQWL++L
Sbjct: 361 WAGCPDTRRSITGFAVYLGDSLISWKSKKQITVSRSSSEAEYRALATTTCELQWLSYLLK 420
Query: 2624 DFCIQVPTPISLWCDNQAALHIVANPVFHERTKHLEIDCHIVRNQFKAGFILPQKVSSSL 2803
DF I + P L+CDNQ AL I +NP+FHERTKH+EIDCHIVR++ G + VSSSL
Sbjct: 421 DFHIDLIRPSILYCDNQFALQISSNPIFHERTKHIEIDCHIVRDKVSTGLLKLLPVSSSL 480
Query: 2804 QLADIFTKSLGQQVFDGLLVKLGMKDLHN 2890
QLADI TK L VF KLGM ++H+
Sbjct: 481 QLADILTKPLSPFVFRSHCSKLGMLNIHS 509