BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia27_contig00033259
         (934 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAW63130.1| 31 kDa putative protein [Strawberry latent ringsp...   292   2e-95
ref|NP_620833.1| 36 kDa protein [Strawberry latent ringspot viru...   241   1e-74

>gb|AAW63130.1| 31 kDa putative protein [Strawberry latent ringspot virus satellite
           RNA]
          Length = 287

 Score =  292 bits (748), Expect = 2e-95
 Identities = 162/277 (58%), Positives = 191/277 (68%), Gaps = 10/277 (3%)
 Frame = -1

Query: 928 MLPKRVRVISKSTGRIFTVGRHDLHLLPSGKRAWVPLRNPTVAGGSSRRERPRKAVTKQP 749
           +LPKRVRV+SK +GRIFTVGRHDLH+LPSGKRAWVP+R P  AGG+ RRERP     K  
Sbjct: 13  VLPKRVRVVSKRSGRIFTVGRHDLHVLPSGKRAWVPVRAPIAAGGNFRRERPLVVSHKTQ 72

Query: 748 VVRPIRAP--VKVENRFSPLCVEESLPAPKS-----KYSYADAVRAKAS-PAKARKGVVT 593
            VRPIR P  VK  NRF+PL V+E + A  +     K SYADA+R+ A      RKGVVT
Sbjct: 73  QVRPIRMPAAVKTSNRFAPLSVKEGVTAAVAAPINPKKSYADALRSSAFVKPSVRKGVVT 132

Query: 592 LVETSRDFTLFEDNTSAVCVIP--GQTPAEAESLKREFAKRALVFSGRRLLPVGLPEDLS 419
           LVET +DF LF D  +   V+P  GQT  EAE+L+REF KR L FSGRRL   GLP    
Sbjct: 133 LVETEKDFALFGDEFTQNQVVPCPGQTLPEAEALQREFHKRTLAFSGRRLSVSGLPS--G 190

Query: 418 SDPFASPLPRGPVPARRIAHVDPFTWANMSYGQCTRVLALYKQLCSCFGARMFQSTLYIE 239
           SDPFASP P  P    ++AHVDP +W  MS+GQC+R L LYKQLCSCFG +MF S+LY  
Sbjct: 191 SDPFASPSPVRPALTPKVAHVDPVSWEGMSFGQCSRALTLYKQLCSCFGVKMFSSSLYGM 250

Query: 238 AVRKVCKLADVVPVSIPEFIGRLGQVDFGAAPAHVYV 128
           AVRKV +L +  PV+IPE   RLGQVD  A   H++V
Sbjct: 251 AVRKVLRLREDFPVAIPENFARLGQVDRDARAVHLFV 287


>ref|NP_620833.1| 36 kDa protein [Strawberry latent ringspot virus satellite RNA]
           gi|478364|pir||JQ2018 hypothetical 36.5K protein -
           strawberry latent ringspot virus [Strawberry latent
           ringspot virus] gi|312511|emb|CAA49480.1| 36 kDa protein
           [Strawberry latent ringspot virus satellite RNA]
          Length = 331

 Score =  241 bits (614), Expect = 1e-74
 Identities = 143/254 (56%), Positives = 164/254 (64%), Gaps = 12/254 (4%)
 Frame = -1

Query: 931 GMLPKRVRVISKSTGRIFTVGRHDLHLLPSGKRAWVPLRNPTVAGGSSRRERPRKAVTKQ 752
           G+LPKRVRVISK   RIFTVGRHDLH+LPSGKRAWVP+R P  AGGS RRERP     K 
Sbjct: 12  GVLPKRVRVISKRRARIFTVGRHDLHVLPSGKRAWVPVRAPIAAGGSFRRERPPVVSHKT 71

Query: 751 PVVRPIRAP--VKVENRFSPLCVEESLPA------PKSKYSYADAVRAKA-SPAKARKGV 599
             VRPIR P  VK  NRF+ L V+E  P       PK K SYADA+R+ A     ARKGV
Sbjct: 72  QQVRPIRTPTAVKTSNRFASLSVKEEAPEAVAPFNPKKK-SYADALRSSAFVKPSARKGV 130

Query: 598 VTLVETSRDFTLF--EDNTSAVCVIPGQTPAEAESLKREFAKRALVFSGRRLLPVGLPED 425
           VTLVET +DF LF  E   + V   PGQT +EAESL+REF KRA  FSG+RL   GLPE 
Sbjct: 131 VTLVETEKDFALFCDEFTQNQVVPCPGQTLSEAESLQREFHKRAFAFSGKRLSVSGLPE- 189

Query: 424 LSSDPFASPLPR-GPVPARRIAHVDPFTWANMSYGQCTRVLALYKQLCSCFGARMFQSTL 248
               P  S L R       +  HVDP +W  MS+GQC+R L LY+QLC CFG +MF S+L
Sbjct: 190 ---GPIPSLLLRQSACNCPKGCHVDPVSWEGMSFGQCSRALTLYRQLCGCFGMKMFSSSL 246

Query: 247 YIEAVRKVCKLADV 206
           Y  AVR+   L  +
Sbjct: 247 YGMAVRRFSALGKI 260