BLASTX nr result
ID: Rehmannia27_contig00033049
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia27_contig00033049
(4097 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|KYP42564.1| Retrovirus-related Pol polyprotein from transposo... 788 0.0
gb|KYP61022.1| Retrovirus-related Pol polyprotein from transposo... 814 0.0
gb|KYP68426.1| Retrovirus-related Pol polyprotein from transposo... 796 0.0
emb|CAN81016.1| hypothetical protein VITISV_025518 [Vitis vinifera] 775 0.0
gb|KYP43110.1| Retrovirus-related Pol polyprotein from transposo... 794 0.0
gb|KYP64985.1| Retrovirus-related Pol polyprotein from transposo... 803 0.0
gb|KYP55668.1| Retrovirus-related Pol polyprotein from transposo... 790 0.0
gb|KYP34298.1| Retrovirus-related Pol polyprotein from transposo... 783 0.0
gb|KYP34293.1| Retrovirus-related Pol polyprotein from transposo... 783 0.0
gb|KYP39497.1| Retrovirus-related Pol polyprotein from transposo... 773 0.0
gb|KYP36109.1| Retrovirus-related Pol polyprotein from transposo... 781 0.0
gb|KYP65734.1| Retrovirus-related Pol polyprotein from transposo... 763 0.0
gb|KHN01991.1| Retrovirus-related Pol polyprotein from transposo... 768 0.0
gb|KHN05285.1| Retrovirus-related Pol polyprotein from transposo... 746 0.0
gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsi... 717 0.0
emb|CAN82526.1| hypothetical protein VITISV_028058 [Vitis vinifera] 748 0.0
gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsi... 712 0.0
gb|KYP37906.1| Retrovirus-related Pol polyprotein from transposo... 739 0.0
gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hop... 702 0.0
gb|KYP31387.1| Retrovirus-related Pol polyprotein from transposo... 721 0.0
>gb|KYP42564.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1427
Score = 788 bits (2036), Expect(2) = 0.0
Identities = 415/918 (45%), Positives = 553/918 (60%), Gaps = 26/918 (2%)
Frame = +1
Query: 1420 HKNVAGCDVCHQSKQHRLPFSTSSIQTSDVFELLHIDVWGPYRAPSITNTPFLLNIVDDF 1599
+KN+ CD CH KQ RLPF TS+ ++ F+L+H+D+WGP PSI + L IVDD+
Sbjct: 516 NKNIT-CDYCHFGKQARLPFPTSTTKSLSCFDLVHMDIWGPLAIPSIHGHKYFLTIVDDY 574
Query: 1600 SRATWTFLMSHKSHTPKLLAQFLAMVHNHFQKSVKFIRTDNGTEFLSLECQTLFSAHGII 1779
SR TW + M K T L+ F++ V F K +K +R+DNG EF L++ +GI+
Sbjct: 575 SRHTWIYFMKSKGETRNLIQNFISYVQTQFTKHIKVLRSDNGVEFAM---DQLYATYGIV 631
Query: 1780 HQKTCTYTPQQNGVVERKHRHLLDIARALMFQSNAPSHLWPYSILTATFLTNRLPVSVLH 1959
HQ +C TPQQN VVERKHRH+L+I R L+F SN P W Y++ A L NRLP VL+
Sbjct: 632 HQTSCVETPQQNSVVERKHRHILNITRTLLFHSNVPKSFWCYAVGHAIHLINRLPSPVLN 691
Query: 1960 WKTPFEVLYSKTPDYSGLKPFGCLCYATNVFPHKDKFTTRAHKCIFLGYLPNQKGYRLFD 2139
+P+++LY K P LK FG LCYA+ + + K +A K ++LG KG+ + D
Sbjct: 692 NSSPYQMLYDKPPTLLDLKVFGSLCYASTLVQGRSKLAPKATKGVYLGVKQGTKGFLVLD 751
Query: 2140 LTTEKVLISRDVIFVEDQFP----------------------CPIQTPNLSDTPLPYLSV 2253
L T + +SR+V+F E FP + + + T + S+
Sbjct: 752 LLTRSIFVSRNVVFYEHIFPFFEKGSTVITNSQQQNDACFDFLYLDSSSHPVTTIDNSSL 811
Query: 2254 LEDSSSSNLEFIXXXXXXXXXXXXXXXXXXXXXVSHR--PAYLNDFITNHVTDTAPCF-- 2421
L+ S+ + H+ PAYL D+ N + P
Sbjct: 812 LDIDSAHYENDLNDIDESAHPSETSSPSQLRKSTRHKCSPAYLKDYHCNLLIGVPPPEDK 871
Query: 2422 HVASSVTSATHSYHHISPLFAPAYVSFLANVDSIQEPLSYSQARLDDNWVEAMSKELEAL 2601
H+ + + SY +S +Y ++ ++ + EP +++QA + WVEAM EL+AL
Sbjct: 872 HIRYPLNTVL-SYDSLSA----SYSRYVLSITTHVEPHTFNQAVKNKVWVEAMQAELDAL 926
Query: 2602 EFNGTWLLTELPPGKKAIGSKWVYKVKMNPDGTIDRYKARLVAKGYHQIHGVDYFDSFSP 2781
E N TW + LPPGK IGSKWVYK+K DG+I+RYKARLV KGY QI G+DYFD+F+P
Sbjct: 927 EHNKTWTIMPLPPGKTPIGSKWVYKIKYKSDGSIERYKARLVVKGYTQIQGLDYFDTFAP 986
Query: 2782 VAKLVTERFLIAVATQHHWGLHQLDINNAFLHGTLNEEVYMRPPEGYLAAKPGHVCLLKK 2961
VAKL T R L+A+A+ HW LHQLDINNAFLHG L E+VYM P+G KP HVC L K
Sbjct: 987 VAKLSTVRMLLAIASCQHWELHQLDINNAFLHGDLLEDVYMEIPQGLNIDKPNHVCKLNK 1046
Query: 2962 SLYGLKQASREWNTAFCGSLIAYGFRQSSHDHCLFLKGDNTSFXXXXXXXXXXXXTGSNE 3141
SLYGLKQASR+W L++ ++QS HDH LF K T F G++
Sbjct: 1047 SLYGLKQASRQWFAKLSSFLLSLHYKQSQHDHSLFTKHHGTHFTVILIYVDDLIIAGTDS 1106
Query: 3142 SDIAHLKHYLDGLFTIKDLGYAKYFLGVEIARSEQGTYLCQRKYILDILRDTKMMDCKVA 3321
+I H+K LD F IKDLG +YFLG+EIARS G L QRKY LD+L +T + K
Sbjct: 1107 EEINHIKQSLDVKFKIKDLGPLRYFLGLEIARSHLGISLSQRKYTLDLLDETSFLAGKPV 1166
Query: 3322 STPLPPGIKLIHGAGTPLSNPEQFRRLIGRLLYLNFTRPDIAFATQQLSQFVGQPHTSHW 3501
TP+ G +L H +P +P +RRLIG+LLYL TRPDI+++ QQLSQF+ P SH+
Sbjct: 1167 LTPIIKGTRLSHTTDSPYEDPAGYRRLIGKLLYLITTRPDISYSVQQLSQFLSCPQQSHY 1226
Query: 3502 EATLHVLRYLKGCPSVGLFYSVSATCSLTAYSDADWGTCPDTRKSLTGYCVFYGNCLISW 3681
+A + VLRYLKG P GLFY + L A+SD+DW +CPDTR+SL+GY +F GN LISW
Sbjct: 1227 QAAIRVLRYLKGNPGQGLFYPADSPLQLKAFSDSDWASCPDTRRSLSGYSIFLGNSLISW 1286
Query: 3682 KTKKQTTVSRSSAEAEYRALGTTVCELQWLYYIAQDLQLSLPTPIDLWCDNQAAMHIVAN 3861
K KKQ+T+SRSS+EAEYRAL T CE+QWL Y+ QD + TP L+CDNQ+A HI +N
Sbjct: 1287 KCKKQSTISRSSSEAEYRALAATACEIQWLTYLLQDFSVPFTTPALLYCDNQSARHIASN 1346
Query: 3862 PVFHERTKHLDIDCHIVRNKFKDGFLLLKHVTSRHQLADIFTKALGCQAFQRILSKFGLQ 4041
VFHERTKH++IDCH+VR K + G L + S HQLADI TK L FQ +LSK G+
Sbjct: 1347 AVFHERTKHIEIDCHLVREKLQAGLFHLLPIASSHQLADILTKPLDPSPFQYLLSKLGVI 1406
Query: 4042 DFLRSPT*GGGVEEYSLI 4095
+ + SP G ++ S +
Sbjct: 1407 N-IYSPACRGVLDHNSTV 1423
Score = 198 bits (503), Expect(2) = 0.0
Identities = 146/467 (31%), Positives = 227/467 (48%), Gaps = 9/467 (1%)
Frame = +2
Query: 14 LYARNAKELWDDIAERFGGCNGPLLYQLKRDIANVTQGTLSITVYFTKLKRLWDELSCLD 193
+Y NA+ LW+D+ ERF + L ++I ++ Q +I+ YFT+LK LW+EL L
Sbjct: 55 IYINNAQRLWEDLKERFSKGDYFRFSDLLQEIHSIKQADRTISSYFTELKILWEELESLR 114
Query: 194 PLPPCTCET------NKQLIDRDMKDKLIQFLMGLNDSHEHVRSQILIMDPLPNINKAYS 355
P P CTC+ + ++ D + +I FL GLND + V+SQILIMDPLP INK +S
Sbjct: 115 PTPTCTCDVRCSCDLSTKVKDYKDTEYVICFLKGLNDQYNTVKSQILIMDPLPVINKVFS 174
Query: 356 MLLTVEKQR-TAQLEVSELIENSAMMSKVQGPIRDTPNRMGNNSGPPHRNRGFHRMTKEE 532
++L E+Q+ T L S + ++ ++ G R + N G +S R G T
Sbjct: 175 LVLQQERQQNTPNLADSRIF---SLNTQSGGNWRSSSNGRGGSSRGRGRTGGRGSFTNAG 231
Query: 533 KAKLICEHCKGPGHDVNTCFKLHGIPDWFKKLKDQRGRQGVANLVDSTGAQNNKLGASTE 712
K +C C H +++C+ HG P F K KD +G N + S S +
Sbjct: 232 K---VCTFCGKENHTIDSCYFKHGFPPNF-KFKD-KGNTTSINTISSKAPSTQASEISRK 286
Query: 713 GNPHPDMSNMIQQEVAKYLAGRMMGGSNLPSESNLSFAHFADFAGKHAPIDVHFGLSMLG 892
N SN ++ + M+ + L S + S + + + G
Sbjct: 287 QNKE-STSNFTHEDYDHLI--DMLKRAKLQSPEH-SINQLVHQTTTESVSSSNLQQNQPG 342
Query: 893 N-LDNGSWILDMGDSRHMCSNPTLLSHITPISPHATICLPDGTTKSVTHSGHIRLSPHLH 1069
N L++ WILD G + H+C++ + PI P + LP+G T + SG I S
Sbjct: 343 NPLEHTDWILDTGATDHVCNSLYFFTKYHPIDP-VHVKLPNGNTSTAQFSGTIIFSEKFF 401
Query: 1070 LHDVFVVPSFKYNLLSVAQLTQQANLKCIFFPTHCVFQDLHSDKILGTGKLHGRLYILQQ 1249
L+DV +P+F N++SV ++ + + +F C+ QDL S K +G ++ LYILQ+
Sbjct: 402 LNDVLYIPNFHLNIISVQKIAASLDYELMFNKNSCIIQDLTSKKTIGLAEVKNHLYILQR 461
Query: 1250 TPVLSTPVSLAFNSDSSFPTQVL-CNGSFELWHKKLGHASISLLNHI 1387
P +S A S+S Q SF+LWH +LGH S +L +
Sbjct: 462 -PSKDNSIS-ACKSNSVLNAQPKGTTSSFDLWHYRLGHPSHVVLQTV 506
>gb|KYP61022.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1316
Score = 814 bits (2102), Expect(2) = 0.0
Identities = 421/870 (48%), Positives = 555/870 (63%), Gaps = 3/870 (0%)
Frame = +1
Query: 1438 CDVCHQSKQHRLPFSTSSIQTSDVFELLHIDVWGPYRAPSITNTPFLLNIVDDFSRATWT 1617
C+ CH +KQ +LPF S S F+LLH+D+WGP S+ + L IVDD +R TW
Sbjct: 442 CNTCHHAKQKKLPFPLSHSYASQPFDLLHMDIWGPCSVTSMHGHKYFLTIVDDHTRFTWL 501
Query: 1618 FLMSHKSHTPKLLAQFLAMVHNHFQKSVKFIRTDNGTEFLSLECQTLFSAHGIIHQKTCT 1797
FLM +KS T + + F+ V F K VK IRTDNG EF + FS+ GIIHQ TC
Sbjct: 502 FLMQNKSETRQHIINFINQVETQFDKHVKVIRTDNGLEFSMTQ---YFSSKGIIHQTTCV 558
Query: 1798 YTPQQNGVVERKHRHLLDIARALMFQSNAPSHLWPYSILTATFLTNRLPVSVLHWKTPFE 1977
TPQQNG+VERKH+HLL++ R+L+FQ+N PS W ++++ ATFL N +P LH +PFE
Sbjct: 559 ETPQQNGIVERKHQHLLNVTRSLLFQANLPSIFWCFALMHATFLINCIPTPFLHNISPFE 618
Query: 1978 VLYSKTPDYSGLKPFGCLCYATNVFPHKDKFTTRAHKCIFLGYLPNQKGYRLFDLTTEKV 2157
LY D S L FGCLCY++ + H+ K RAH CIFLG+ P+ KGY LF+L T +
Sbjct: 619 KLYGHPCDISILCVFGCLCYSSTITSHRTKLDPRAHPCIFLGFKPHTKGYLLFNLHTHGL 678
Query: 2158 LISRDVIFVEDQFPC---PIQTPNLSDTPLPYLSVLEDSSSSNLEFIXXXXXXXXXXXXX 2328
L+SR+V+F ED FP P S P+ Y V + S+
Sbjct: 679 LVSRNVLFHEDHFPSFTKPHSPSFSSPVPIHYNYVDYPTFPSSSIVESSDPPTSDQHSSP 738
Query: 2329 XXXXXXXXVSHRPAYLNDFITNHVTDTAPCFHVASSVTSATHSYHHISPLFAPAYVSFLA 2508
P YL DF T T+ H ++ + HS+ L +P++ ++
Sbjct: 739 PPLRRSTRPRRPPTYLQDF-HGAFTSTSTA-HSSTGIRHPLHSFLSYD-LLSPSFHHYVF 795
Query: 2509 NVDSIQEPLSYSQARLDDNWVEAMSKELEALEFNGTWLLTELPPGKKAIGSKWVYKVKMN 2688
++ S+ EP ++++A D+W++AM +E+ ALE N TW+LT LPP K AIG +WVYKVK
Sbjct: 796 SISSVTEPKNFAEASKSDSWLKAMHEEIFALEANNTWVLTTLPPHKTAIGCRWVYKVKHK 855
Query: 2689 PDGTIDRYKARLVAKGYHQIHGVDYFDSFSPVAKLVTERFLIAVATQHHWGLHQLDINNA 2868
DG+IDRYKARLVAKGY Q+ G+D+FD+FSPVAKL T R L+++A ++W L QLD+NNA
Sbjct: 856 ADGSIDRYKARLVAKGYTQMEGLDFFDTFSPVAKLTTVRLLLSLAAINNWHLKQLDVNNA 915
Query: 2869 FLHGTLNEEVYMRPPEGYLAAKPGHVCLLKKSLYGLKQASREWNTAFCGSLIAYGFRQSS 3048
FLHG LNEEVYM+ P G + PG VC L++SLYGLKQASR+W LI +G+ S
Sbjct: 916 FLHGDLNEEVYMQLPPGLTPSFPGQVCRLQRSLYGLKQASRQWYARLSSFLIQHGYVPSP 975
Query: 3049 HDHCLFLKGDNTSFXXXXXXXXXXXXTGSNESDIAHLKHYLDGLFTIKDLGYAKYFLGVE 3228
DH LFLK + G++ ++I HL L F IKDLG KYFLG+E
Sbjct: 976 SDHSLFLKCSPATTTAILIYVDDIVLAGNDLTEIHHLTSLLHTTFQIKDLGNLKYFLGLE 1035
Query: 3229 IARSEQGTYLCQRKYILDILRDTKMMDCKVASTPLPPGIKLIHGAGTPLSNPEQFRRLIG 3408
+AR+ G +LCQRKYILD+L DT M+ K STP+ + L +GTPL++ +RRL+G
Sbjct: 1036 VARNHTGIHLCQRKYILDLLSDTGMLASKPVSTPMDYSMHLSASSGTPLTDTAAYRRLVG 1095
Query: 3409 RLLYLNFTRPDIAFATQQLSQFVGQPHTSHWEATLHVLRYLKGCPSVGLFYSVSATCSLT 3588
RL+YL TRPDI +A QQLSQFV P T+H +A +LRYLKG P G+F SV+++ L
Sbjct: 1096 RLIYLTNTRPDITYAVQQLSQFVSNPTTAHRQALFRILRYLKGTPGSGIFLSVNSSVQLR 1155
Query: 3589 AYSDADWGTCPDTRKSLTGYCVFYGNCLISWKTKKQTTVSRSSAEAEYRALGTTVCELQW 3768
A+SD+DW CPDTR+S+TG+ V+ G+ LISWK+KKQ TVSRSS+EAEYRAL TT CELQW
Sbjct: 1156 AFSDSDWAGCPDTRRSITGFAVYLGDSLISWKSKKQITVSRSSSEAEYRALATTTCELQW 1215
Query: 3769 LYYIAQDLQLSLPTPIDLWCDNQAAMHIVANPVFHERTKHLDIDCHIVRNKFKDGFLLLK 3948
L Y+ +D + +P L+CDNQ+A+ I +NPVFHERTKH++IDCHIVR+K G L L
Sbjct: 1216 LSYLLKDFHIDPISPSILYCDNQSALQIASNPVFHERTKHIEIDCHIVRDKVSTGLLKLL 1275
Query: 3949 HVTSRHQLADIFTKALGCQAFQRILSKFGL 4038
V+S QLADI TK L F+ SK G+
Sbjct: 1276 PVSSSQQLADILTKPLSPFVFRSHCSKLGM 1305
Score = 158 bits (400), Expect(2) = 0.0
Identities = 123/480 (25%), Positives = 213/480 (44%), Gaps = 17/480 (3%)
Frame = +2
Query: 8 AFLYARNAKELWDDIAERFGGCNGPLLYQLKRDIANVTQGTLSITVYFTKLKRLWDELSC 187
+ L+ A ++W D+ R+ + + L+ + +++ QG LS+T YFTKL+ LWDEL
Sbjct: 17 SILWMDQADDIWKDLKTRYSQGDLLRVSDLQLEASSLKQGDLSVTEYFTKLRILWDELEN 76
Query: 188 LDPLPPCTCETN------KQLIDRDMKDKLIQFLMGLNDSHEHVRSQILIMDPLPNINKA 349
P P CTC + R ++D+ +QFL GLND + +V+S +L+M+ P I+K
Sbjct: 77 FRPDPNCTCTIKCACSVLTIIAQRKLEDQAMQFLRGLNDQYNNVKSHVLLME--PPISKI 134
Query: 350 YSMLLTVEKQRTAQLEVSEL-IENSAMMSKVQGPIRDTPNRMGNNSGPPHRNRGFHRMT- 523
+S ++ E+Q Q ++ + ++ ++ ++ V P NR G+ R GF T
Sbjct: 135 FSYVVQQERQLLGQNFIANVHLDRTSSINAVASPTCTHCNRTGHTDAVCFRKHGFPSTTN 194
Query: 524 -----KEEKAKLICEHCKGPGHDVNTCFKLHGIPDWFKKLKDQRGRQGVANLVDSTGAQN 688
+ + IC HC GH + C++ HG P K L D+ V+ T +
Sbjct: 195 RSNKGSSNRPRRICTHCGKTGHTIEVCYQKHGFPPGSKPLSDKTAS------VNHTVTGD 248
Query: 689 NKLGASTEGNPHPDMSN---MIQQEVAKYLAGRMMGGSNLPSESNLSFAHFADFAGKHAP 859
K+ ST+ D+ ++ ++ + + G+ S+LS HF+ F
Sbjct: 249 CKVTESTQSLESQDVRTSFPIVCSAISTPSSWILDSGATDHVSSSLS--HFSSF------ 300
Query: 860 IDVHFGLSMLGNLDNGSWILDMGDSRHMCSNPTLLSHITPISPHATICLPDGTTKSVTHS 1039
+PI+P + LP G THS
Sbjct: 301 --------------------------------------SPINP-IDVKLPTGQHVLATHS 321
Query: 1040 GHIRLSPHLHLHDVFVVPSFKYNLLSVAQLTQQANLKCIFFPTHCVFQDLHSDKILGTGK 1219
G ++ + +L DV +P+F YNL+S+++L + + IF C+ Q+ ++ K +GT
Sbjct: 322 GTVKFTNSFYLVDVLYIPAFTYNLISISKLVSSLSCQLIFDHHSCIIQETNTMKKIGTVD 381
Query: 1220 LHGRLYILQQTPVLSTPVSLAFNSDSSFPTQVLCN-GSFELWHKKLGHASISLLNHIGFL 1396
++ LY T ++ S +S C+ +LWH ++GH S L FL
Sbjct: 382 VNEGLYSF-------TASNIHHPSTNSVIVHPKCSIQPIDLWHFRMGHLSHERLQSFPFL 434
>gb|KYP68426.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1423
Score = 796 bits (2055), Expect(2) = 0.0
Identities = 416/899 (46%), Positives = 560/899 (62%), Gaps = 29/899 (3%)
Frame = +1
Query: 1438 CDVCHQSKQHRLPFSTSSIQTSDVFELLHIDVWGPYRAPSITNTPFLLNIVDDFSRATWT 1617
C++CH +K RLPF S ++ +VF+L+H+D+WGP SI + L IVDD SR TW
Sbjct: 525 CEICHLAKHKRLPFPDSLTKSENVFDLIHVDIWGPLSVASIFGHKYFLTIVDDKSRFTWI 584
Query: 1618 FLMSHKSHTPKLLAQFLAMVHNHFQKSVKFIRTDNGTEFLSLECQTLFSAHGIIHQKTCT 1797
F M +K T LL F++ V FQ+++K IRTDNG+EFL + ++ GI+HQ +C
Sbjct: 585 FFMKNKFETKLLLQNFVSFVQTQFQQNIKTIRTDNGSEFL---LKDWYAKLGIVHQTSCV 641
Query: 1798 YTPQQNGVVERKHRHLLDIARALMFQSNAPSHLWPYSILTATFLTNRLPVSVLHWKTPFE 1977
TPQQNGVVERKH+H+L +ARALMFQSN W Y+I A L NRLP L +P+
Sbjct: 642 NTPQQNGVVERKHQHILSMARALMFQSNVSKMFWNYAIGHAVHLINRLPTRFLQQNSPYY 701
Query: 1978 VLYSKTPDYSGLKPFGCLCYATNVFPHKDKFTTRAHKCIFLGYLPNQKGYRLFDLTTEKV 2157
VLYS+ PD+S LK FGCL +A+ + ++ K R+ KC+FLGY KG+ ++DL T +
Sbjct: 702 VLYSEKPDFSHLKVFGCLAFASTLSHNRTKLEPRSRKCMFLGYSSGTKGFIMYDLKTRET 761
Query: 2158 LISRDVIFVEDQFPC--------------PI-QTPNLSDTPLPY--------------LS 2250
ISRDV F E+ FP PI Q P S P+P S
Sbjct: 762 FISRDVQFYENIFPLQKDFSIQSTDGPVVPIAQMPLTSCDPIPSHTHDNLDETEHEHNSS 821
Query: 2251 VLEDSSSSNLEFIXXXXXXXXXXXXXXXXXXXXXVSHRPAYLNDFITNHVTDTAPCFHVA 2430
L ++SSN + V +RP YL D+ H T A +
Sbjct: 822 TLPMTNSSNSD------QPNIEINIPEIRRTSQRVKNRPGYLQDY---HCTLAASKVDQS 872
Query: 2431 SSVTSATHSYHHISPLFAPAYVSFLANVDSIQEPLSYSQARLDDNWVEAMSKELEALEFN 2610
SS S + ++ SF++ + SI EP SY A D W EA+ EL+AL+
Sbjct: 873 SSTARYPISDYLPYTSYSAVQQSFVSTISSIIEPRSYQDAINHDCWKEAIRAELDALDKQ 932
Query: 2611 GTWLLTELPPGKKAIGSKWVYKVKMNPDGTIDRYKARLVAKGYHQIHGVDYFDSFSPVAK 2790
TW+LT+LPP K+A+G +WV+KVK + DG+++RYKARLVAKG+ QI G+DY D+FSPV +
Sbjct: 933 KTWILTDLPPNKRAVGCRWVFKVKYHADGSVERYKARLVAKGFTQIPGLDYIDTFSPVVR 992
Query: 2791 LVTERFLIAVATQHHWGLHQLDINNAFLHGTLNEEVYMRPPEGYLAAKPGHVCLLKKSLY 2970
+ T R +A+A +W +HQLDIN AFLHG L EEVYM+PP G + + P VC L+KSLY
Sbjct: 993 MTTIRVFLAIAAASNWSVHQLDINTAFLHGDLVEEVYMKPPPGLILSSPNKVCKLQKSLY 1052
Query: 2971 GLKQASREWNTAFCGSLIAYGFRQSSHDHCLFLKGDNTSFXXXXXXXXXXXXTGSNESDI 3150
GLKQASR+WN +L +GF QS D+ LF K N F +GS+E++I
Sbjct: 1053 GLKQASRQWNIKLTETLKLFGFVQSKSDYSLFTKRTNIGFIAILVYVDDLIISGSDETEI 1112
Query: 3151 AHLKHYLDGLFTIKDLGYAKYFLGVEIARSEQGTYLCQRKYILDILRDTKMMDCKVASTP 3330
+K LD F+IKDLG YFLG+E +RS+QG +CQRKY L++L+DT ++ K STP
Sbjct: 1113 MKVKRLLDKQFSIKDLGQLSYFLGLEFSRSDQGISVCQRKYALELLQDTGLLASKPCSTP 1172
Query: 3331 LPPGIKLIHGAGTPLSNPEQFRRLIGRLLYLNFTRPDIAFATQQLSQFVGQPHTSHWEAT 3510
+ +L H S+P +RRL+GRL+YL TRPD+AFA +LSQF+ QP+ +H++A
Sbjct: 1173 MDHTTRLHHDPLDLYSDPSSYRRLVGRLIYLTHTRPDLAFAVGKLSQFMHQPNNAHFQAA 1232
Query: 3511 LHVLRYLKGCPSVGLFYSVSATCSLTAYSDADWGTCPDTRKSLTGYCVFYGNCLISWKTK 3690
VLRY+K P+ GLF+ S+ LT Y+D+DW TCPD+R+S++G+C F GN L+SWK+K
Sbjct: 1233 RKVLRYVKATPTKGLFFPSSSDLKLTGYTDSDWATCPDSRRSISGFCFFLGNALVSWKSK 1292
Query: 3691 KQTTVSRSSAEAEYRALGTTVCELQWLYYIAQDLQLSLPTPIDLWCDNQAAMHIVANPVF 3870
KQ VSRSS+EAEYRAL VCE QWL+ + D QL PI L+CDNQ+A++I ANPVF
Sbjct: 1293 KQNVVSRSSSEAEYRALALGVCEAQWLHKLLTDFQLQDLIPISLFCDNQSALYIAANPVF 1352
Query: 3871 HERTKHLDIDCHIVRNKFKDGFLLLKHVTSRHQLADIFTKALGCQAFQRILSKFGLQDF 4047
HERTKH++IDCH VR++ + GF+ L +TS QLADI TK L + FQ + K GL +F
Sbjct: 1353 HERTKHVEIDCHTVRDQVQAGFIHLAPITSSGQLADILTKPLLPKMFQDFVCKLGLSNF 1411
Score = 173 bits (438), Expect(2) = 0.0
Identities = 126/457 (27%), Positives = 211/457 (46%), Gaps = 2/457 (0%)
Frame = +2
Query: 2 LDAFLYARNAKELWDDIAERFGGCNGPLLYQLKRDIANVTQGTLSITVYFTKLKRLWDEL 181
+ + ++ A ++W+D+ +R+ + + +L +I ++ QG +SIT YFT L+ LW EL
Sbjct: 94 IPSVIWMPTASQIWNDLKKRYYQGDAFRISELLEEIYSLKQGNMSITHYFTTLQGLWQEL 153
Query: 182 SCLDPLPPCTCETNKQLIDRDMKDKLIQFLMGLNDSHEHVRSQILIMDPLPNINKAYSML 361
P+P CTC T + +I+FL GLN+ + +VRSQ+++MDPLP++ K +SM+
Sbjct: 154 DHFCPIPSCTCFTT---------ECVIRFLKGLNEQYSNVRSQVMLMDPLPSVQKVFSMI 204
Query: 362 LTVEKQRTAQLEVSELIENSAMMSKVQGPIRDTPNRMGNNSGPPHRNRGFHRMTKEEKAK 541
L E++ + L S NN ++ + K+ K
Sbjct: 205 LQQEREFHGTNDNQVLAVTS------------------NNERNNYKGSKTFKRNKDYNTK 246
Query: 542 LICEHCKGPGHDVNTCFKLHGIPDWFKKLKDQRGRQGVANLVDSTGAQNNKLGASTEGN- 718
+C HC GH V++C+K HG P L+ + GR + N S ++ S
Sbjct: 247 -VCSHCGRIGHLVDSCYKKHGPP-----LQHKHGR--IVNQYQSVSDEDTDDDQSVHSQR 298
Query: 719 -PHPDMSNMIQQEVAKYLAGRMMGGSNLPSESNLSFAHFADFAGKHAPIDVHFGLSMLGN 895
+ NM E + L + + S S A + + P + LS +
Sbjct: 299 VVSHNSGNMFTPEQHQALLALLQQSGSTSSHSVNQLAGPSILSSPKPPGMI---LSFPYS 355
Query: 896 LDNGSWILDMGDSRHMCSNPTLLSHITPISPHATICLPDGTTKSVTHSGHIRLSPHLHLH 1075
++ WI+D G + H+C N I P I LP+G+ S SG + LS +L
Sbjct: 356 HNSDCWIIDTGATDHVCKNINFFQSYRRIKP-ILIQLPNGSQVSTCVSGTVLLSKTCYLT 414
Query: 1076 DVFVVPSFKYNLLSVAQLTQQANLKCIFFPTHCVFQDLHSDKILGTGKLHGRLYILQQTP 1255
DV +P+F +NL+SV++L + + F + C Q HS +++G +L LY + +P
Sbjct: 415 DVLFIPNFHFNLISVSKLAKTLSCTLTFSDSDCQIQANHSMRMIGAAELRAGLYAMVSSP 474
Query: 1256 VLSTPVSLAFNSDSSFPTQVLCNGSFELWHKKLGHAS 1366
++ + S F T +LWH +LGH S
Sbjct: 475 ----ESNVVHHCTSHFFTY-----QSDLWHLRLGHLS 502
>emb|CAN81016.1| hypothetical protein VITISV_025518 [Vitis vinifera]
Length = 1461
Score = 775 bits (2002), Expect(2) = 0.0
Identities = 419/910 (46%), Positives = 543/910 (59%), Gaps = 35/910 (3%)
Frame = +1
Query: 1438 CDVCHQSKQHRLPFSTSSIQTSDVFELLHIDVWGPYRAPSITNTPFLLNIVDDFSRATWT 1617
CD+C +KQ RL F +S I + F+L+H D+WGP+R S + + L IVDD +R TW
Sbjct: 569 CDICPLAKQTRLSFPSSFISSHAPFDLIHCDIWGPHRINSHSGAXYFLTIVDDHTRYTWI 628
Query: 1618 FLMSHKSHTPKLLAQFLAMVHNHFQKSVKFIRTDNGTEFLSLECQTLFSAHGIIHQKTCT 1797
LMS KS T +L F++ V F + +K +RTDNGTE S++ GI + +C
Sbjct: 629 HLMSFKSETQGILQSFISWVETQFNRCIKTLRTDNGTEISSMK--QYLDTKGINYHHSCA 686
Query: 1798 YTPQQNGVVERKHRHLLDIARALMFQSNAPSHLWPYSILTATFLTNRLPVSVLHWKTPFE 1977
YTPQQNGVVERKHRHLL++ RAL FQ+N P W SI TA +L NRLP +L K+P++
Sbjct: 687 YTPQQNGVVERKHRHLLNVGRALRFQANLPLKFWGESIQTACYLINRLPTPLLSHKSPYQ 746
Query: 1978 VLYSKTPDYSGLKPFGCLCYATNVFPHKDKFTTRAHKCIFLGYLPNQKGYRLFDLTTEKV 2157
+L +K P Y L+ FGCLCYATN+ P KF RA +CIF+GY QKGYR++DL T K
Sbjct: 747 LLXNKLPSYHHLRTFGCLCYATNLLP-THKFDQRARRCIFVGYPLGQKGYRVYDLXTNKF 805
Query: 2158 LISRDVIFVEDQFPC----------------------PIQT----PNLSDTPLPYLSVLE 2259
S DV+F E FP PI T P D P P LS LE
Sbjct: 806 FSSXDVVFHEHIFPFHTNPQEEQHDVVVLPLPQTSYEPITTETTKPQADDQPPPLLSSLE 865
Query: 2260 DSSSSNLEFIXXXXXXXXXXXXXXXXXXXXXVSHRPAYLNDFITNHVTDTAPCFHVASSV 2439
+S+ + V +L +F H+ TA VASS
Sbjct: 866 STSNERTLXLDTIVSPPPPTTRRSDRIKQPNV-----HLRNF---HLYHTAK---VASSQ 914
Query: 2440 TSATHSYHHISPL--------FAPAYVSFLANVDSIQEPLSYSQARLDDNWVEAMSKELE 2595
+S+ H PL +P Y +F+ + ++ EP +Y QA LD W EAM+ EL
Sbjct: 915 SSSLSGTRH--PLTRYISYAQLSPKYRNFVCAITTLVEPTTYEQAVLDPKWQEAMAAELH 972
Query: 2596 ALEFNGTWLLTELPPGKKAIGSKWVYKVKMNPDGTIDRYKARLVAKGYHQIHGVDYFDSF 2775
ALE N TW LT LP G + IG KWVYK+K N DGT++RYKARLVAKG+ Q G+DY ++F
Sbjct: 973 ALEQNHTWTLTPLPYGHRPIGCKWVYKIKYNSDGTVERYKARLVAKGFTQREGIDYKETF 1032
Query: 2776 SPVAKLVTERFLIAVATQHHWGLHQLDINNAFLHGTLNEEVYMRPPEGYLA-AKPGHVCL 2952
SPVAKL T R L+A+A HW LHQ+D+ NAFLHG L EEVYM+ P G+ + VC
Sbjct: 1033 SPVAKLTTVRCLLAIAAVRHWSLHQMDVQNAFLHGDLLEEVYMQLPLGFRQQGETPMVCR 1092
Query: 2953 LKKSLYGLKQASREWNTAFCGSLIAYGFRQSSHDHCLFLKGDNTSFXXXXXXXXXXXXTG 3132
L KSLYGLKQASR W F ++ GF QS D+ LF K SF TG
Sbjct: 1093 LNKSLYGLKQASRSWFRKFSATIQQDGFHQSRADYSLFTKISGNSFTAVLIYVDDMIITG 1152
Query: 3133 SNESDIAHLKHYLDGLFTIKDLGYAKYFLGVEIARSEQGTYLCQRKYILDILRDTKMMDC 3312
++E+ IA LK L F IKDLG +YFLG+E+ARS G + QRKY LDIL + ++
Sbjct: 1153 NDENVIAALKESLHTKFRIKDLGQLRYFLGIEVARSTDGISISQRKYTLDILDEAGLLGA 1212
Query: 3313 KVASTPLPPGIKLIHGAGTPLSNPEQFRRLIGRLLYLNFTRPDIAFATQQLSQFVGQPHT 3492
K STP+ KL+ G L NP +RRL+G+L+YL TRP+I+++ LSQF+ +P
Sbjct: 1213 KPLSTPMEENNKLLPTVGDLLKNPSTYRRLVGQLIYLTITRPEISYSVHILSQFMQEPRK 1272
Query: 3493 SHWEATLHVLRYLKGCPSVGLFYSVSATCSLTAYSDADWGTCPDTRKSLTGYCVFYGNCL 3672
H A H+LRYLKG P GL++ L + DADW C TR+S+TGYC+F
Sbjct: 1273 PHLHAVHHLLRYLKGAPGQGLYFPAKGNLLLRGFCDADWARCSITRRSVTGYCIFLXGAX 1332
Query: 3673 ISWKTKKQTTVSRSSAEAEYRALGTTVCELQWLYYIAQDLQLSLPTPIDLWCDNQAAMHI 3852
ISWKTKKQTTVSRSS E+EYRA+ + CEL WL Y+ DL++ P L+CD++AA+HI
Sbjct: 1333 ISWKTKKQTTVSRSSXESEYRAMASITCELTWLRYLLDDLKVEHSQPAKLFCDSKAALHI 1392
Query: 3853 VANPVFHERTKHLDIDCHIVRNKFKDGFLLLKHVTSRHQLADIFTKALGCQAFQRILSKF 4032
ANPV+HERTKH++IDCH+VR + + G ++ HV S QLAD+FTK L F +LSKF
Sbjct: 1393 AANPVYHERTKHIEIDCHVVRERIQSGAIVTAHVPSSCQLADLFTKPLNSSIFHSLLSKF 1452
Query: 4033 GLQDFLRSPT 4062
G+ D + +PT
Sbjct: 1453 GVLD-IHAPT 1461
Score = 191 bits (486), Expect(2) = 0.0
Identities = 144/438 (32%), Positives = 209/438 (47%), Gaps = 7/438 (1%)
Frame = +2
Query: 74 NGPLLYQLKRDIANVTQGTLSITVYFTKLKRLWDELSCLDPLPPCTCETNKQLIDRDMKD 253
N +YQ+KRDI QG SI+VY+TKLK WDELS + C+C ++L +RD K+
Sbjct: 159 NDSRIYQIKRDIVEHRQGQQSISVYYTKLKAFWDELSSYHEVLSCSCGGLEKLKERDEKE 218
Query: 254 KLIQFLMGLNDSHEHVRSQILIMDPLPNINKAYSMLLTVEKQRTAQLEVSELIENSAMMS 433
+++QFLMGLNDS+ +R QIL+M PLP+ + YS++L EK Q+EVS + N
Sbjct: 219 RVMQFLMGLNDSYAAIRGQILLMHPLPDTRRVYSLVLQQEK----QVEVS--LNNGNKNH 272
Query: 434 KVQGPIRDTPNRMGNNSGPPHRNRGFHRMTKEEKAKLICEHCKGPGHDVNTCFKLHGIPD 613
RD N + H+ +++K L C +C H + C+ LHG P
Sbjct: 273 YAMLADRD------NKATSAHQ-------VQKQKTPLHCSYCDRDYHSIEKCYYLHGFPI 319
Query: 614 WF----KKLKDQRGRQGVANLVDSTGAQNNKLGASTEGN--PHPDMSNMIQQEVAKYLAG 775
K +K R AN V + NK TE P D + +E + +A
Sbjct: 320 GHKLHGKNVKPPNQRHSNANNVK---VETNK-AVETEAKLLPTNDGPRLTTEEYNQLMAM 375
Query: 776 -RMMGGSNLPSESNLSFAHFADFAGKHAPIDVHFGLSMLGNLDNGSWILDMGDSRHMCSN 952
R G N +N + + + + K P H N WI+D G + H+ S+
Sbjct: 376 IRKNNGGNSQHFANATGINMS--SSKIIPNCPH---------SNMCWIIDSGATDHVTSS 424
Query: 953 PTLLSHITPISPHATICLPDGTTKSVTHSGHIRLSPHLHLHDVFVVPSFKYNLLSVAQLT 1132
LL + TI LP+G + G + ++PH+ L DV VP F+ NLLSV++LT
Sbjct: 425 AELLDP-KNLPKTTTISLPNGGQAHIESIGSLHVTPHIKLDDVLKVPQFQVNLLSVSKLT 483
Query: 1133 QQANLKCIFFPTHCVFQDLHSDKILGTGKLHGRLYILQQTPVLSTPVSLAFNSDSSFPTQ 1312
+ +FF CV QD + K +G GK H LY L Q + ++ +SD
Sbjct: 484 RALQCIVMFFFDFCVVQDATTRKTIGLGKQHNGLYYLAQDQNPALAYAIHKHSD------ 537
Query: 1313 VLCNGSFELWHKKLGHAS 1366
LWH++LGH S
Sbjct: 538 --------LWHQRLGHPS 547
>gb|KYP43110.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1353
Score = 794 bits (2051), Expect(2) = 0.0
Identities = 415/899 (46%), Positives = 559/899 (62%), Gaps = 29/899 (3%)
Frame = +1
Query: 1438 CDVCHQSKQHRLPFSTSSIQTSDVFELLHIDVWGPYRAPSITNTPFLLNIVDDFSRATWT 1617
C++CH +K RLPF S ++ +VF+L+H+D+WGP SI + L IVDD SR TW
Sbjct: 455 CEICHLAKHKRLPFPDSLTKSENVFDLIHVDIWGPLSVASIFGHKYFLTIVDDKSRFTWI 514
Query: 1618 FLMSHKSHTPKLLAQFLAMVHNHFQKSVKFIRTDNGTEFLSLECQTLFSAHGIIHQKTCT 1797
F M +K T LL F++ V FQ+++K IRTDNG+EFL + ++ GI+HQ +C
Sbjct: 515 FFMKNKFETKLLLQNFVSFVQTQFQQNIKTIRTDNGSEFL---LKDWYAKLGIVHQTSCV 571
Query: 1798 YTPQQNGVVERKHRHLLDIARALMFQSNAPSHLWPYSILTATFLTNRLPVSVLHWKTPFE 1977
TPQQNGVVERKH+H+L +ARALMFQSN W Y+I A L NRLP L +P+
Sbjct: 572 NTPQQNGVVERKHQHILSMARALMFQSNVSKMFWNYAIGHAVHLINRLPTRFLQQNSPYY 631
Query: 1978 VLYSKTPDYSGLKPFGCLCYATNVFPHKDKFTTRAHKCIFLGYLPNQKGYRLFDLTTEKV 2157
VLYS+ PD+S LK FGCL +A+ + ++ K R+ KC+FLGY KG+ ++DL T +
Sbjct: 632 VLYSEKPDFSHLKVFGCLAFASTLSHNRTKLEPRSRKCMFLGYSSGTKGFIMYDLKTRET 691
Query: 2158 LISRDVIFVEDQFPC--------------PI-QTPNLSDTPLPY--------------LS 2250
ISRDV F E+ FP PI Q P S P+P S
Sbjct: 692 FISRDVQFYENIFPLQKDFSIQSTDGPVVPIAQMPLTSCDPIPSHTHDNLDETEHEHNSS 751
Query: 2251 VLEDSSSSNLEFIXXXXXXXXXXXXXXXXXXXXXVSHRPAYLNDFITNHVTDTAPCFHVA 2430
L ++SSN + V +RP YL D+ H T A +
Sbjct: 752 TLPMTNSSNSD------QPNIEINIPEIRRTSQRVKNRPGYLQDY---HCTLAASKVDQS 802
Query: 2431 SSVTSATHSYHHISPLFAPAYVSFLANVDSIQEPLSYSQARLDDNWVEAMSKELEALEFN 2610
SS S + ++ SF++ + SI EP SY A D W EA+ EL+AL+
Sbjct: 803 SSTARYPISDYLPYTSYSAVQQSFVSTISSIIEPRSYQDAINHDCWKEAIRAELDALDKQ 862
Query: 2611 GTWLLTELPPGKKAIGSKWVYKVKMNPDGTIDRYKARLVAKGYHQIHGVDYFDSFSPVAK 2790
TW+LT+LPP K+A+G +WV+KVK + DG+++RYKARLVAKG+ QI G+DY D+FSPV +
Sbjct: 863 KTWILTDLPPNKRAVGCRWVFKVKYHADGSVERYKARLVAKGFTQIPGLDYIDTFSPVVR 922
Query: 2791 LVTERFLIAVATQHHWGLHQLDINNAFLHGTLNEEVYMRPPEGYLAAKPGHVCLLKKSLY 2970
+ T R +A+A +W +HQLDIN AFLHG L EEVYM+PP G + + P VC L+KSLY
Sbjct: 923 MTTIRVFLAIAAASNWSVHQLDINTAFLHGDLVEEVYMKPPPGLILSSPNKVCKLQKSLY 982
Query: 2971 GLKQASREWNTAFCGSLIAYGFRQSSHDHCLFLKGDNTSFXXXXXXXXXXXXTGSNESDI 3150
GLKQ SR+WN +L +GF QS D+ LF K N F +GS+E++I
Sbjct: 983 GLKQVSRQWNIKLTETLKLFGFVQSKSDYSLFTKRTNIGFIAILVYVDDLIISGSDETEI 1042
Query: 3151 AHLKHYLDGLFTIKDLGYAKYFLGVEIARSEQGTYLCQRKYILDILRDTKMMDCKVASTP 3330
+K LD F+IKDLG YFLG+E +RS+QG +CQRKY L++L+DT ++ K STP
Sbjct: 1043 MKVKRLLDKQFSIKDLGQLSYFLGLEFSRSDQGISVCQRKYALELLQDTGLLASKPCSTP 1102
Query: 3331 LPPGIKLIHGAGTPLSNPEQFRRLIGRLLYLNFTRPDIAFATQQLSQFVGQPHTSHWEAT 3510
+ +L H S+P +RRL+GRL+YL TRPD+AFA +LSQF+ QP+ +H++A
Sbjct: 1103 MDHTTRLHHDPLDLYSDPSSYRRLVGRLIYLTHTRPDLAFAVGKLSQFMHQPNNAHFQAA 1162
Query: 3511 LHVLRYLKGCPSVGLFYSVSATCSLTAYSDADWGTCPDTRKSLTGYCVFYGNCLISWKTK 3690
VLRY+K P+ GLF+ S+ LT Y+D+DW TCPD+R+S++G+C F GN L+SWK+K
Sbjct: 1163 RKVLRYVKATPTKGLFFPSSSDLKLTGYTDSDWATCPDSRRSISGFCFFLGNALVSWKSK 1222
Query: 3691 KQTTVSRSSAEAEYRALGTTVCELQWLYYIAQDLQLSLPTPIDLWCDNQAAMHIVANPVF 3870
KQ VSRSS+EAEYRAL VCE QWL+ + D QL PI L+CDNQ+A++I ANPVF
Sbjct: 1223 KQNVVSRSSSEAEYRALALGVCEAQWLHKLLTDFQLQDLIPISLFCDNQSALYIAANPVF 1282
Query: 3871 HERTKHLDIDCHIVRNKFKDGFLLLKHVTSRHQLADIFTKALGCQAFQRILSKFGLQDF 4047
HERTKH++IDCH VR++ + GF+ L +TS QLADI TK L + FQ + K GL +F
Sbjct: 1283 HERTKHVEIDCHTVRDQVQAGFIHLAPITSSGQLADILTKPLLPKMFQDFVCKLGLSNF 1341
Score = 166 bits (421), Expect(2) = 0.0
Identities = 123/455 (27%), Positives = 206/455 (45%)
Frame = +2
Query: 2 LDAFLYARNAKELWDDIAERFGGCNGPLLYQLKRDIANVTQGTLSITVYFTKLKRLWDEL 181
+ + ++ A ++W+D+ +R+ + + +L +I ++ QG +SIT YFT L+ LW EL
Sbjct: 51 IPSVIWMPTASQIWNDLKKRYYQGDAFRISELLEEIYSLKQGNMSITHYFTTLQGLWQEL 110
Query: 182 SCLDPLPPCTCETNKQLIDRDMKDKLIQFLMGLNDSHEHVRSQILIMDPLPNINKAYSML 361
P+P CTC T + FL GLN+ + +VRSQ+++MDPLP++ K +SM+
Sbjct: 111 DHFCPIPSCTCFTTR-------------FLKGLNEQYSNVRSQVMLMDPLPSVQKVFSMI 157
Query: 362 LTVEKQRTAQLEVSELIENSAMMSKVQGPIRDTPNRMGNNSGPPHRNRGFHRMTKEEKAK 541
L E++ + L S NN ++ + K+ K
Sbjct: 158 LQQEREFHGTNDNQVLAVTS------------------NNERNNYKGSKTFKRNKDYNTK 199
Query: 542 LICEHCKGPGHDVNTCFKLHGIPDWFKKLKDQRGRQGVANLVDSTGAQNNKLGASTEGNP 721
+C HC GH V++C+K HG P L+ + GR + N S ++
Sbjct: 200 -VCSHCGRIGHLVDSCYKKHGPP-----LQHKHGR--IVNQYQSVSDEDT---------- 241
Query: 722 HPDMSNMIQQEVAKYLAGRMMGGSNLPSESNLSFAHFADFAGKHAPIDVHFGLSMLGNLD 901
D ++ Q V + +G M E + + +G LS + +
Sbjct: 242 -DDDQSVHSQRVVSHNSGNM-----FTPEQHQALLALLQQSG--------MILSFPYSHN 287
Query: 902 NGSWILDMGDSRHMCSNPTLLSHITPISPHATICLPDGTTKSVTHSGHIRLSPHLHLHDV 1081
+ WI+D G + H+C N I P I LP+G+ S SG + LS +L DV
Sbjct: 288 SDCWIIDTGATDHVCKNINFFQSYRRIKP-ILIQLPNGSQVSTCVSGTVLLSKTCYLTDV 346
Query: 1082 FVVPSFKYNLLSVAQLTQQANLKCIFFPTHCVFQDLHSDKILGTGKLHGRLYILQQTPVL 1261
+P+F +NL+SV++L + + F + C Q HS +++G +L LY + +P
Sbjct: 347 LFIPNFHFNLISVSKLAKTLSCTLTFSDSDCQIQANHSMRMIGAAELRAGLYAMVSSP-- 404
Query: 1262 STPVSLAFNSDSSFPTQVLCNGSFELWHKKLGHAS 1366
++ + S F T +LWH +LGH S
Sbjct: 405 --ESNVVHHCTSHFFTY-----QSDLWHLRLGHLS 432
>gb|KYP64985.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1394
Score = 803 bits (2074), Expect(2) = 0.0
Identities = 413/898 (45%), Positives = 557/898 (62%), Gaps = 25/898 (2%)
Frame = +1
Query: 1420 HKNVAGCDVCHQSKQHRLPFSTSSIQTSDVFELLHIDVWGPYRAPSITNTPFLLNIVDDF 1599
+KN CD CH +K +LPF ++S +FELLH D+WGP SI + L +VDDF
Sbjct: 495 YKNCTPCDTCHFAKHKKLPFPVCISKSSHLFELLHADIWGPLHTISIDGHKYFLTLVDDF 554
Query: 1600 SRATWTFLMSHKSHTPKLLAQFLAMVHNHFQKSVKFIRTDNGTEFLSLECQTLFSAHGII 1779
SR TW L+ K+ +L +F+ ++ N F +K +R+DNG EF + FS+ GI
Sbjct: 555 SRFTWVHLLKSKAEVKTVLPKFIHLIENQFGIKLKRLRSDNGKEFFLTD---FFSSKGIF 611
Query: 1780 HQKTCTYTPQQNGVVERKHRHLLDIARALMFQSNAPSHLWPYSILTATFLTNRLPVSVLH 1959
H+ +C TPQQNG+VERKH+H+L++ARAL+FQS S W Y+I A L NRLP L
Sbjct: 612 HETSCIETPQQNGIVERKHQHILNVARALLFQSGLSSVFWSYAIKHAVHLINRLPTPFLE 671
Query: 1960 WKTPFEVLYSKTPDYSGLKPFGCLCYATNVFPHKDKFTTRAHKCIFLGYLPNQKGYRLFD 2139
K+P+E ++ K PD S L+ FGCL +A + K RA KCIFLG+ P KGY LF+
Sbjct: 672 NKSPYESVFGKIPDLSTLRVFGCLAFANTITSGITKLDKRASKCIFLGFKPGVKGYLLFN 731
Query: 2140 LTTEKVLISRDVIFVEDQFPCPIQTPNLSD----------------------TPLPYLSV 2253
LTT+ L+SR+VIF E FP +P++S+ + +P +V
Sbjct: 732 LTTKSFLLSRNVIFYESHFPYASNSPSVSNNHTTGTTASQQSFDSLIAFDIISAIPN-NV 790
Query: 2254 LEDSSSSNLEFIXXXXXXXXXXXXXXXXXXXXX---VSHRPAYLNDFITNHVTDTAPCFH 2424
D SSN++ +S RP +++++ T +
Sbjct: 791 TSDIVSSNIDHNAVEPVLQFNDDSNDAVQIVDQPTRISTRPRKPPAYLSDYDCPTLSSAN 850
Query: 2425 VASSVTSATHSYHHISPLFAPAYVSFLANVDSIQEPLSYSQARLDDNWVEAMSKELEALE 2604
+ HSY S + ++ +F ++ + EP S+ +A D+W +AM E++ALE
Sbjct: 851 TSCCTPYPLHSYLSYSNC-SDSHTAFCMSLSATIEPTSFKEACKHDHWQQAMLAEIQALE 909
Query: 2605 FNGTWLLTELPPGKKAIGSKWVYKVKMNPDGTIDRYKARLVAKGYHQIHGVDYFDSFSPV 2784
N TW L LPP K+ +G KWVYK K+N DG+I+R+KARLVAKG+ Q G+D+F++FSPV
Sbjct: 910 RNKTWSLVRLPPKKRVVGCKWVYKTKLNADGSIERHKARLVAKGFTQTEGMDFFETFSPV 969
Query: 2785 AKLVTERFLIAVATQHHWGLHQLDINNAFLHGTLNEEVYMRPPEGYLAAKPGHVCLLKKS 2964
KL T RFL++VA H+W LHQLD++NAFLHG L+ EVYM+PP G + +P VC L KS
Sbjct: 970 VKLTTVRFLLSVAVSHNWFLHQLDVDNAFLHGDLDVEVYMKPPPGLILPEPHLVCKLHKS 1029
Query: 2965 LYGLKQASREWNTAFCGSLIAYGFRQSSHDHCLFLKGDNTSFXXXXXXXXXXXXTGSNES 3144
LYGL+QASR+ N+ +LI+YGF QS DH LF++ +TSF TG +
Sbjct: 1030 LYGLRQASRQGNSKLTSALISYGFSQSPADHSLFIRHSSTSFTALLVYVDDIVLTGDSIQ 1089
Query: 3145 DIAHLKHYLDGLFTIKDLGYAKYFLGVEIARSEQGTYLCQRKYILDILRDTKMMDCKVAS 3324
DI +K +L F IKDLG K FLG ++ARS+QG L QRKY LDIL + CK A+
Sbjct: 1090 DIVAVKKFLHHEFRIKDLGNLKLFLGFDVARSQQGLILNQRKYCLDILAEFGFTGCKPAN 1149
Query: 3325 TPLPPGIKLIHGAGTPLSNPEQFRRLIGRLLYLNFTRPDIAFATQQLSQFVGQPHTSHWE 3504
+P P +KL G + +P +RRLIG+L YL TRPDI+FA QQ+SQF+ +P SH
Sbjct: 1150 SPSNPTVKLKDDEGDLVQDPTAYRRLIGKLQYLTNTRPDISFAVQQVSQFMSKPRYSHLN 1209
Query: 3505 ATLHVLRYLKGCPSVGLFYSVSATCSLTAYSDADWGTCPDTRKSLTGYCVFYGNCLISWK 3684
A +L+YLKGCP +GLFY + + A+SD+DW TC TRKS TGYCVFYGNCLISWK
Sbjct: 1210 AAFRILKYLKGCPGLGLFYPSANPHRIQAFSDSDWATCCITRKSTTGYCVFYGNCLISWK 1269
Query: 3685 TKKQTTVSRSSAEAEYRALGTTVCELQWLYYIAQDLQLSLPTPIDLWCDNQAAMHIVANP 3864
+KKQ+TVSRSS EAEYRAL + CELQWL Y+A DL L +P P +CDNQ+A+ + NP
Sbjct: 1270 SKKQSTVSRSSTEAEYRALASVACELQWLKYVADDLCLQIPLPFPTFCDNQSAIQLAKNP 1329
Query: 3865 VFHERTKHLDIDCHIVRNKFKDGFLLLKHVTSRHQLADIFTKALGCQAFQRILSKFGL 4038
FHERTKH+++DCH++R K DG ++L HV S+HQLAD+FTK+L F LSK GL
Sbjct: 1330 SFHERTKHIEVDCHLIRAKILDGLIVLSHVPSKHQLADMFTKSLYPGPFNVNLSKMGL 1387
Score = 155 bits (391), Expect(2) = 0.0
Identities = 127/465 (27%), Positives = 196/465 (42%), Gaps = 10/465 (2%)
Frame = +2
Query: 14 LYARNAKELWDDIAERFGGCNGPLLYQLKRDIANVTQGTLSITVYFTKLKRLWDELS--- 184
++ A E+W D+ +RF + + L+ I QG S++ Y+TKLK LW EL
Sbjct: 55 MWMDTALEIWRDLKDRFSHADKFRICDLQDQILACRQGDFSVSEYYTKLKILWKELELYR 114
Query: 185 CL---DPLPPCTCETNKQLIDRDMKDKLIQFLMGLNDSHEHVRSQILIMDPLPNINKAYS 355
C+ L PC C +L D +I+FL GLN+S+ VRSQI+++DP+P+I K +S
Sbjct: 115 CVLTCTCLTPCKCGLLSKLHKEREDDYVIRFLRGLNESYAQVRSQIMMLDPMPSIVKTFS 174
Query: 356 MLLTVEKQRTAQLEVSELIENSAMMSKVQGPIRDTPNRMGNNSGPPHRNRGFHRMTKEEK 535
M+L E+ E LI ++ + T N+S + N K
Sbjct: 175 MVLQHER------EFIGLIPKHSVPDSLAFAAMSTNQPRFNSSDRTNSNAS----KNNSK 224
Query: 536 AKLICEHCKGPGHDVNTCFKLHGIPDWFKKLKDQRGRQGVANLVDSTGAQNNKLGASTEG 715
CE CK H + TC+ G P ++K K VDS + + +G
Sbjct: 225 NNKFCEKCKKTNHTIETCYFRIGFPAGYRKNKTNNKASASLVEVDSNASLPH---LDLDG 281
Query: 716 NPHPDMSNMIQQEVAKYLAGRMMGGSNLPSESNLSFAHFADFAGKHAPIDVHFGLSMLGN 895
+P D + + LA H+ + H + G
Sbjct: 282 SPTNDQFTFSKDQYHALLA-------------------LLQHTKAHSSLVNHSSVHNSGT 322
Query: 896 LDN-GSWILDMGDSRHMCSNPTLLSHITPISPHATICLPDGTTKSVTHSGHIRLSPHLHL 1072
WI+D G + H+C +L + P I LP+ TT SG+I + L L
Sbjct: 323 SSAFNHWIVDSGATDHICPTKSLFHDLRATKP-IPIKLPNSTTVIANFSGNIHIG-DLLL 380
Query: 1073 HDVFVVPSFKYNLLSVAQLTQQANLKCIFFPTHCVFQDLHSDKILGTGKLHGRLYILQQT 1252
DV VP F +L+SV +L + +F +HC F K++G + LY L+++
Sbjct: 381 ADVLFVPEFSVSLISVPKLVSTIDCMAVFCDSHCFFFQKSHFKMIGAARKIDGLYCLEES 440
Query: 1253 PVLSTPVSL---AFNSDSSFPTQVLCNGSFELWHKKLGHASISLL 1378
L+ L N + + G+ LWH +LGH S S+L
Sbjct: 441 NDLNCTKVLQHSVINKSNISVVNAVNTGA--LWHHRLGHTSNSIL 483
>gb|KYP55668.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1136
Score = 790 bits (2039), Expect = 0.0
Identities = 415/870 (47%), Positives = 541/870 (62%), Gaps = 3/870 (0%)
Frame = +1
Query: 1438 CDVCHQSKQHRLPFSTSSIQTSDVFELLHIDVWGPYRAPSITNTPFLLNIVDDFSRATWT 1617
C+ CH KQ +L F S F+LLH+D+WGP S+ + L IVDD +R TW
Sbjct: 263 CNTCHHDKQKKLSFPLSHSYALQPFDLLHMDIWGPCPVTSMHGHKYFLAIVDDHTRFTWL 322
Query: 1618 FLMSHKSHTPKLLAQFLAMVHNHFQKSVKFIRTDNGTEFLSLECQTLFSAHGIIHQKTCT 1797
FLM +KS T + + F+ V F K+VK IRTDNG EF + FS+ GIIHQ TC
Sbjct: 323 FLMQNKSETRQHIINFINQVETQFDKNVKVIRTDNGLEFSMTQ---YFSSKGIIHQTTCV 379
Query: 1798 YTPQQNGVVERKHRHLLDIARALMFQSNAPSHLWPYSILTATFLTNRLPVSVLHWKTPFE 1977
TPQQNG+VERKH+HLL++ R+L+FQ+N PS W +++ A FL N +P LH +PFE
Sbjct: 380 ETPQQNGIVERKHQHLLNVTRSLLFQANLPSIFWCFALKHAAFLINCIPTPFLHNISPFE 439
Query: 1978 VLYSKTPDYSGLKPFGCLCYATNVFPHKDKFTTRAHKCIFLGYLPNQKGYRLFDLTTEKV 2157
LY D S L+ FGCLCY++ + H+ K RAH CIFLG+ P+ KGY L +L T +
Sbjct: 440 KLYGHPCDISILRVFGCLCYSSIITSHRTKLDPRAHPCIFLGFKPHTKGYLLVNLHTHGL 499
Query: 2158 LISRDVIFVEDQFPC---PIQTPNLSDTPLPYLSVLEDSSSSNLEFIXXXXXXXXXXXXX 2328
L+S++VIF ED FP P S P+PY S S+
Sbjct: 500 LVSQNVIFHEDHFPSFTKPNSPSFSSPVPIPYNYADYPSFPSSSIVESSEPPPPDQHSSP 559
Query: 2329 XXXXXXXXVSHRPAYLNDFITNHVTDTAPCFHVASSVTSATHSYHHISPLFAPAYVSFLA 2508
P YL DF T T P H ++ + HS+ L +P++ ++
Sbjct: 560 PPLRRSTRPRRPPTYLQDF-HGAFTSTGP--HSSTGIRHPLHSFISYDRL-SPSFHHYVF 615
Query: 2509 NVDSIQEPLSYSQARLDDNWVEAMSKELEALEFNGTWLLTELPPGKKAIGSKWVYKVKMN 2688
++ S+ +P ++ +A D+W++AM +E+ ALE N TW+LT LPP K AIG +WVYKVK
Sbjct: 616 SISSVTKPKNFVEASKSDSWLKAMHEEISALEANNTWVLTTLPPHKTAIGCRWVYKVKHK 675
Query: 2689 PDGTIDRYKARLVAKGYHQIHGVDYFDSFSPVAKLVTERFLIAVATQHHWGLHQLDINNA 2868
DG+IDRYKARLVAKGY Q+ G+D+FD+FSPVAKL T R LI++A H+ L QLD+NN+
Sbjct: 676 ADGSIDRYKARLVAKGYTQMEGLDFFDTFSPVAKLTTVRLLISLAAIHNCHLKQLDVNNS 735
Query: 2869 FLHGTLNEEVYMRPPEGYLAAKPGHVCLLKKSLYGLKQASREWNTAFCGSLIAYGFRQSS 3048
FLHG LNEEVYM+ P G + PG VC L++SLYGLKQASR+W LI +G+ S
Sbjct: 736 FLHGDLNEEVYMQLPPGITPSFPGQVCRLQRSLYGLKQASRQWYARLSSFLIQHGYVPSP 795
Query: 3049 HDHCLFLKGDNTSFXXXXXXXXXXXXTGSNESDIAHLKHYLDGLFTIKDLGYAKYFLGVE 3228
DH LFLK G++ ++I HL L F IKDLG KYFLG+E
Sbjct: 796 SDHSLFLKCSPAITTAILIYVDDIVLAGNDLTEIHHLTSLLHNTFQIKDLGNLKYFLGLE 855
Query: 3229 IARSEQGTYLCQRKYILDILRDTKMMDCKVASTPLPPGIKLIHGAGTPLSNPEQFRRLIG 3408
+AR+ G +LCQRKY LD+L DT M+ K STP+ L +GTP ++ +RRL+G
Sbjct: 856 VARNHTGIHLCQRKYTLDLLSDTGMLASKPVSTPMDYSTHLSASSGTPFTDTAAYRRLVG 915
Query: 3409 RLLYLNFTRPDIAFATQQLSQFVGQPHTSHWEATLHVLRYLKGCPSVGLFYSVSATCSLT 3588
RL+YL TRP IA+A QQLSQFV P T+H +A +L YLKG P G+F SV+++ L
Sbjct: 916 RLIYLPNTRPAIAYAVQQLSQFVSNPPTAHRQALFRILCYLKGTPGSGIFLSVNSSVQLR 975
Query: 3589 AYSDADWGTCPDTRKSLTGYCVFYGNCLISWKTKKQTTVSRSSAEAEYRALGTTVCELQW 3768
A+SD DW CPDTR+S+TG+ V+ G+ LISWK+KKQ TVSRSS+EAEYRAL TT CELQW
Sbjct: 976 AFSDYDWAGCPDTRRSITGFAVYLGDSLISWKSKKQITVSRSSSEAEYRALATTTCELQW 1035
Query: 3769 LYYIAQDLQLSLPTPIDLWCDNQAAMHIVANPVFHERTKHLDIDCHIVRNKFKDGFLLLK 3948
L Y+ +D + L P L+CDNQ A+ I +NP+FHERTKH++IDCHIVR+K G L L
Sbjct: 1036 LSYLLKDFHIDLIRPSILYCDNQFALQIASNPIFHERTKHIEIDCHIVRDKVSTGLLKLL 1095
Query: 3949 HVTSRHQLADIFTKALGCQAFQRILSKFGL 4038
V+S QLADI TK L F SK G+
Sbjct: 1096 PVSSSLQLADILTKPLSPFVFHSHYSKLGM 1125
Score = 97.8 bits (242), Expect = 7e-17
Identities = 80/274 (29%), Positives = 123/274 (44%), Gaps = 1/274 (0%)
Frame = +2
Query: 548 CEHCKGPGHDVNTCFKLHGIPDWFKKLKDQRGRQGVANLVDSTGAQNNKLGASTEGNPHP 727
C HC GH + C++ HG P K L D+ V+ T + K+ ST+
Sbjct: 1 CTHCGKTGHTIEVCYQKHGFPPGSKPLSDKTAS------VNHTVTGDCKVTESTQSLESQ 54
Query: 728 DMSNMIQQEVAKYLAGRMMGGSNLPSESNLSFAHFADFAGKHAPIDVHFGLSMLGNLDNG 907
D+ QQ A L + + S S SF PI V +S
Sbjct: 55 DVRFTPQQYQA--LLALIQQSTTGTSASCTSF-----------PI-VCSAIST-----PS 95
Query: 908 SWILDMGDSRHMCSNPTLLSHITPISPHATICLPDGTTKSVTHSGHIRLSPHLHLHDVFV 1087
SWILD G + H+ S + S +PI+P + LP G S THSG ++ + +L DV
Sbjct: 96 SWILDSGATDHVSSTLSHFSSFSPINP-IDVKLPTGQHVSATHSGIVKFTNSFYLVDVLY 154
Query: 1088 VPSFKYNLLSVAQLTQQANLKCIFFPTHCVFQDLHSDKILGTGKLHGRLYILQQTPVLST 1267
+P F YNL+S+++L + + IF C+ Q+ ++ K +GT ++G LY T
Sbjct: 155 IPDFTYNLISISKLVSSLSCQFIFDRHSCIIQETNTMKKIGTVDVNGGLYSF-------T 207
Query: 1268 PVSLAFNSDSSFPTQVLCN-GSFELWHKKLGHAS 1366
++ S +S C+ +LWH ++GH S
Sbjct: 208 ANNIHNPSTNSIIVHPKCSIQPIDLWHFRMGHLS 241
>gb|KYP34298.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1002
Score = 783 bits (2021), Expect = 0.0
Identities = 407/893 (45%), Positives = 556/893 (62%), Gaps = 19/893 (2%)
Frame = +1
Query: 1423 KNVAGCDVCHQSKQHRLPFSTSSIQTSDVFELLHIDVWGPYRAPSITNTPFLLNIVDDFS 1602
KN C+VC+ +KQ +LPFS S + ++F+LLH+D+WGP SI F L IVDD S
Sbjct: 118 KNKDPCNVCYLAKQRQLPFSHSVTKADEIFDLLHVDIWGPTTPASIFGHKFFLTIVDDKS 177
Query: 1603 RATWTFLMSHKSHTPKLLAQFLAMVHNHFQKSVKFIRTDNGTEFLSLECQTLFSAHGIIH 1782
R TW + M HKS L+ F+ ++ N F K VK +R+DNG EFL + + GI+H
Sbjct: 178 RHTWVYFMKHKSEVADHLSSFITLIENQFGKKVKCVRSDNGPEFL---LKNFYHEKGILH 234
Query: 1783 QKTCTYTPQQNGVVERKHRHLLDIARALMFQSNAPSHLWPYSILTATFLTNRLPVSVLHW 1962
Q +C TPQQNG+VERKH+H++ +ARAL+ QSN P W Y++ A FL NR P S L
Sbjct: 235 QTSCVETPQQNGIVERKHQHIMTVARALVMQSNLPKSFWFYAVSHAVFLINRQPSSFLEN 294
Query: 1963 KTPFEVLYSKTPDYSGLKPFGCLCYATNVFPHKDKFTTRAHKCIFLGYLPNQKGYRLFDL 2142
K P+E++Y+ PD +G+K FGCL YAT + ++ KF R +C+FLG+ P KG L+DL
Sbjct: 295 KIPYEIIYNALPDLAGIKVFGCLAYATTLHHNRKKFDPRGRRCVFLGFKPQVKGSILYDL 354
Query: 2143 TTEKVLISRDVIFVEDQFP-CPIQTPNLSDT--------PLPY------LSVLEDSSSSN 2277
+ + +SR V + E FP P +L+ T PLP LS +SS
Sbjct: 355 NSRETFLSRHVEYFEHIFPFLPTSPLDLTQTISLPRHQPPLPIDTDPTPLSTNTTPTSSP 414
Query: 2278 LEFIXXXXXXXXXXXXXXXXXXXXXVSHRPAYLNDFITNHVTDTAPCFHVASSVTSATHS 2457
+ + P+YL+D+ +H T H + +++ +S
Sbjct: 415 VSVVPPPPFVRKSTRPRKL----------PSYLHDY--HHTLLTT---HNSPTISQPLYS 459
Query: 2458 YH-HIS-PLFAPAYVSFLANVDSIQEPLSYSQARLDDNWVEAMSKELEALEFNGTWLLTE 2631
H HIS +P+ +F ++ SI+EP SY +A D++W A+ EL ALE N TW+LT
Sbjct: 460 IHNHISYSNLSPSQKAFSLSISSIKEPNSYVEAIQDESWKTAIQTELTALEKNNTWILTP 519
Query: 2632 LPPGKKAIGSKWVYKVKMNPDGTIDRYKARLVAKGYHQIHGVDYFDSFSPVAKLVTERFL 2811
LPP K+ +G KWV+K+K N DGTI+R+KARLVAKGY Q +DY D+FSPV K+ T R L
Sbjct: 520 LPPNKQVVGCKWVFKLKFNSDGTIERHKARLVAKGYTQTETLDYLDTFSPVVKMTTVRTL 579
Query: 2812 IAVATQHHWGLHQLDINNAFLHGTLNEEVYMRPPEGYLAA--KPGHVCLLKKSLYGLKQA 2985
+AVAT +W +HQLD+N FLHG L+EEVYM PP G + + VC L KSLYGLKQA
Sbjct: 580 LAVATAKNWHIHQLDVNTTFLHGDLHEEVYMTPPPGLTVSPHQSNCVCKLVKSLYGLKQA 639
Query: 2986 SREWNTAFCGSLIAYGFRQSSHDHCLFLKGDNTSFXXXXXXXXXXXXTGSNESDIAHLKH 3165
SR+WN LI GF+QS D+ LF K F G++ ++I ++K
Sbjct: 640 SRQWNAKLTSVLIDSGFKQSMADYSLFTKQFGAKFTAILVYVDDLVLAGNDPTEINYIKS 699
Query: 3166 YLDGLFTIKDLGYAKYFLGVEIARSEQGTYLCQRKYILDILRDTKMMDCKVASTPLPPGI 3345
LD FTIKDLG KYFLG+E+ARS G L QRKY LD++ DT ++ K +P+ +
Sbjct: 700 LLDQKFTIKDLGQLKYFLGMEVARSSTGIALYQRKYALDLIEDTGLLASKPCKSPMDHSV 759
Query: 3346 KLIHGAGTPLSNPEQFRRLIGRLLYLNFTRPDIAFATQQLSQFVGQPHTSHWEATLHVLR 3525
KL GTPL++P Q+RRL+GRL+YL TR DI+F+ LSQF+ QP H++A L +L+
Sbjct: 760 KLHKTVGTPLTDPTQYRRLLGRLIYLTNTRADISFSVNHLSQFMDQPTDVHYQAALRILK 819
Query: 3526 YLKGCPSVGLFYSVSATCSLTAYSDADWGTCPDTRKSLTGYCVFYGNCLISWKTKKQTTV 3705
Y+K P GLF+ S+ +L YSD+DW +C DTR+S+TG+ F G LISWK+KKQ TV
Sbjct: 820 YVKNAPGKGLFFPSSSDLTLKGYSDSDWASCSDTRRSVTGFSFFLGPALISWKSKKQATV 879
Query: 3706 SRSSAEAEYRALGTTVCELQWLYYIAQDLQLSLPTPIDLWCDNQAAMHIVANPVFHERTK 3885
S+SSAEAEYRAL + CE QWL Y+ D L PI L+CDNQ+A+HI +NPVFHERTK
Sbjct: 880 SKSSAEAEYRALAQSTCEAQWLSYLLHDFGLHSFHPIVLFCDNQSALHIASNPVFHERTK 939
Query: 3886 HLDIDCHIVRNKFKDGFLLLKHVTSRHQLADIFTKALGCQAFQRILSKFGLQD 4044
++++DCHIVR K + G + L +++ QLAD+FTKAL + F++I+ K G+ D
Sbjct: 940 NIELDCHIVREKLQVGLIHLLPISTADQLADVFTKALSLRPFEQIIFKLGMFD 992
>gb|KYP34293.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1376
Score = 783 bits (2023), Expect(2) = 0.0
Identities = 414/909 (45%), Positives = 557/909 (61%), Gaps = 28/909 (3%)
Frame = +1
Query: 1438 CDVCHQSKQHRLPFSTSSIQTSDVFELLHIDVWGPYRA-PSITNTPFLLNIVDDFSRATW 1614
C++CH +KQ +L FS+S S F LLH+D+WGPY SI F IVDD + TW
Sbjct: 477 CNICHYAKQRKLSFSSSHSTASRPFSLLHMDIWGPYSCISSIHGHKFFFTIVDDNTHFTW 536
Query: 1615 TFLMSHKSHTPKLLAQFLAMVHNHFQKSVKFIRTDNGTEFLSLECQTLFSAHGIIHQKTC 1794
FLM +KS T ++ F+ ++ N F ++ I+TDNG EFL Q F++ GI+HQ TC
Sbjct: 537 IFLMINKSETRMHISNFINLIENQFNTRIQTIQTDNGAEFLM---QNFFNSKGIVHQTTC 593
Query: 1795 TYTPQQNGVVERKHRHLLDIARALMFQSNAPSHLWPYSILTATFLTNRLPVSVLHWKTPF 1974
TPQQNGVVERKH+HLL++ AL+F S P W Y++L AT+L NR+ +L KTPF
Sbjct: 594 IETPQQNGVVERKHQHLLNVTHALLFHSKLPYCFWSYALLHATYLINRITTPLLDNKTPF 653
Query: 1975 EVLYSKTPDYSGLKPFGCLCYATNVFPHKDKFTTRAHKCIFLGYLPNQKGYRLFDLTTEK 2154
+ LY +T D + L+ FGCLCY + ++ K RAH C+FLG+ P KGY +DL T
Sbjct: 654 QKLYGQTCDITELRVFGCLCYVSTSTANRKKLDPRAHPCVFLGFSPTTKGYITYDLHTRA 713
Query: 2155 VLISRDVIFVEDQFPCPIQTPNLSDTPL-------------PYLSVLED----------- 2262
+ ISR+V F E+ FP T + S+ P+ +S+L D
Sbjct: 714 ITISRNVSFYENHFPLLQSTSSTSNIPVVSPISFGIHSPSHDLISILPDPHQHNVTSPNP 773
Query: 2263 --SSSSNLEFIXXXXXXXXXXXXXXXXXXXXXVSHRPAYLNDFITNHVTDTAPCFHVASS 2436
+S ++ + + P+YL D+ + +T T+ H
Sbjct: 774 ATTSHDSISLAPYSTTADSLPPNSSPLRRSTRLRNPPSYLQDY-HHSLTSTSTNLHPGML 832
Query: 2437 VTSATH-SYHHISPLFAPAYVSFLANVDSIQEPLSYSQARLDDNWVEAMSKELEALEFNG 2613
+ SY +S F +F++++ ++ EP SY++A D W++AM ELEAL+ N
Sbjct: 833 YPIEKYISYSRLSNDFQ----AFVSSISAVSEPHSYAEAAKHDCWLKAMHAELEALKMNQ 888
Query: 2614 TWLLTELPPGKKAIGSKWVYKVKMNPDGTIDRYKARLVAKGYHQIHGVDYFDSFSPVAKL 2793
TW LT LPP K+A+G +W+YK+K N DG+I+RYKARLVAKGY Q+ G+DY +FSPVAKL
Sbjct: 889 TWTLTPLPPHKQAVGCRWIYKIKYNADGSIERYKARLVAKGYTQVEGLDYLATFSPVAKL 948
Query: 2794 VTERFLIAVATQHHWGLHQLDINNAFLHGTLNEEVYMRPPEGYLAAKPGHVCLLKKSLYG 2973
T R L+A+A W L QLD+NNAFLHG LNEEVYM P G VC L+KSLYG
Sbjct: 949 TTVRLLLALAAVFDWHLKQLDVNNAFLHGDLNEEVYMTLPLGMRPEYSNQVCKLQKSLYG 1008
Query: 2974 LKQASREWNTAFCGSLIAYGFRQSSHDHCLFLKGDNTSFXXXXXXXXXXXXTGSNESDIA 3153
LKQASR+W LI +G+ QS+ DH LF+K ++S G+N S+I
Sbjct: 1009 LKQASRQWFAKLSSFLIHHGYHQSASDHSLFMKFSSSSTTALLIYVDDIVLAGNNLSEIQ 1068
Query: 3154 HLKHYLDGLFTIKDLGYAKYFLGVEIARSEQGTYLCQRKYILDILRDTKMMDCKVASTPL 3333
+ LD F IKDLG KYFLG+E+AR++ G +L QRKY+LDIL D MM + STP+
Sbjct: 1069 LITGLLDVAFKIKDLGNLKYFLGLEVARNKSGIHLSQRKYVLDILSDCGMMASRPVSTPM 1128
Query: 3334 PPGIKLIHGAGTPLSNPEQFRRLIGRLLYLNFTRPDIAFATQQLSQFVGQPHTSHWEATL 3513
+L +GTPL++P +RRL+GRL+YL TRPDI++ LSQF+ P T+H +A
Sbjct: 1129 DYTSRLSASSGTPLADPSSYRRLLGRLIYLTTTRPDISYVVHHLSQFMSAPSTAHSQAIF 1188
Query: 3514 HVLRYLKGCPSVGLFYSVSATCSLTAYSDADWGTCPDTRKSLTGYCVFYGNCLISWKTKK 3693
+LRYLK P GLF+ +++ L A+SD+DW C DTR+S+TG+ V+ G+ LISW++KK
Sbjct: 1189 RILRYLKQAPGSGLFFPTNSSLHLKAFSDSDWAGCLDTRRSITGFSVYLGDSLISWRSKK 1248
Query: 3694 QTTVSRSSAEAEYRALGTTVCELQWLYYIAQDLQLSLPTPIDLWCDNQAAMHIVANPVFH 3873
Q TVSRSS+EAEYRAL TT ELQWL Y+ DL + + P L+CDNQ+A+HI AN VFH
Sbjct: 1249 QPTVSRSSSEAEYRALATTTSELQWLTYLLHDLHVPVHQPALLYCDNQSALHIAANQVFH 1308
Query: 3874 ERTKHLDIDCHIVRNKFKDGFLLLKHVTSRHQLADIFTKALGCQAFQRILSKFGLQDFLR 4053
ERTKH+DIDCH+VR K + G L L V S HQLADIFTK+L F + SK G+ + L
Sbjct: 1309 ERTKHIDIDCHLVREKLQSGLLKLLPVASPHQLADIFTKSLSPSMFTALYSKLGMLN-LY 1367
Query: 4054 SPT*GGGVE 4080
S GG E
Sbjct: 1368 SQLEGGSHE 1376
Score = 150 bits (379), Expect(2) = 0.0
Identities = 118/469 (25%), Positives = 199/469 (42%), Gaps = 9/469 (1%)
Frame = +2
Query: 8 AFLYARNAKELWDDIAERFGGCNGPLLYQLKRDIANVTQGTLSITVYFTKLKRLWDELSC 187
+ L+ +A+E+W D+ R+ + + L+ + +++ QG LS+T YFT+L+ +WDEL
Sbjct: 72 SILWMDSAEEIWRDLKSRYSQGDLLRISALQLEASSIKQGDLSVTDYFTQLRIIWDELEN 131
Query: 188 LDPLP------PCTCETNKQLIDRDMKDKLIQFLMGLNDSHEHVRSQILIMDPLPNINKA 349
P P C C+ + L R ++D+ +QFL GLND + +VRS +L+MDPLP INK
Sbjct: 132 FRPDPICVCIVKCICKVSSILAQRKLEDQAMQFLRGLNDQYANVRSHVLLMDPLPPINKI 191
Query: 350 YSMLLTVEKQRTAQLEVSEL---IENSAMMSKVQGPIRDTPNRMGNNSGPPHRNRGFHRM 520
+S + E+Q ++E+ N+A+M+
Sbjct: 192 FSYVAQQERQFAVSDSLAEVKNGFANAAIMNST--------------------------- 224
Query: 521 TKEEKAKLICEHCKGPGHDVNTCFKLHGIPDWFKKLKDQRGRQGVANLVDSTGAQNNKLG 700
C C GH +TC++ HG PD K RG+ G + +
Sbjct: 225 ---------CNFCGRNGHTESTCYRKHGFPDKNGKSSSNRGKA-----CSHCGKNGHTVD 270
Query: 701 ASTEGNPHPDMSNMIQQEVAKYLAGRMMGGSNLPSESNLSFAHFADFAGKHAPIDVHFGL 880
+ + P + A +N + ++ H
Sbjct: 271 TCYKKHGFPPGHRFSNNKSAS---------ANSSVQPHICTTH----------------- 304
Query: 881 SMLGNLDNGSWILDMGDSRHMCSNPTLLSHITPISPHATICLPDGTTKSVTHSGHIRLSP 1060
+ D WI+D G + H+ + + I P + LP G + THSG + S
Sbjct: 305 ----SFDTTPWIIDSGATDHVTCSLQFFTSYKLIEP-VIVNLPTGHKVTATHSGTVYFSS 359
Query: 1061 HLHLHDVFVVPSFKYNLLSVAQLTQQANLKCIFFPTHCVFQDLHSDKILGTGKLHGRLYI 1240
+ L DV + SF +NL+SV++L + + F C QD+ + +G+ + G LY
Sbjct: 360 NFQLTDVLYISSFAFNLISVSKLVSTTSYQITFTNNVCFIQDIRTKMKIGSVDVRGGLY- 418
Query: 1241 LQQTPVLSTPVSLAFNSDSSFPTQVLCNGSFELWHKKLGHASISLLNHI 1387
Q P P + +S P + +LWH +LGH S + L+++
Sbjct: 419 -QLIPHHFKPPFI--HSTIIHPKCDVI--PIDLWHFRLGHLSNTRLHNM 462
>gb|KYP39497.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1445
Score = 773 bits (1995), Expect(2) = 0.0
Identities = 401/891 (45%), Positives = 547/891 (61%), Gaps = 16/891 (1%)
Frame = +1
Query: 1438 CDVCHQSKQHRLPFSTSSIQTSDVFELLHIDVWGPYRAPSITNTPFLLNIVDDFSRATWT 1617
CD+C +KQ +LPF S+ T+ FEL+H+D+WGP SI + L +VDD+SR TW
Sbjct: 568 CDICSFAKQKKLPFPDSTSITNFFFELIHVDIWGPLAISSIEGYKYFLTVVDDYSRFTWI 627
Query: 1618 FLMSHKSHTPKLLAQFLAMVHNHFQKSVKFIRTDNGTEFLSLECQTLFSAHGIIHQKTCT 1797
L+ K LL F+ ++ N +K +R+DNG EF+ ++A GI+H+ +C
Sbjct: 628 HLLKSKQEVKSLLPNFIILIENQHDCKLKRLRSDNGKEFI---LTNFYNAKGILHETSCV 684
Query: 1798 YTPQQNGVVERKHRHLLDIARALMFQSNAPSHLWPYSILTATFLTNRLPVSVLHWKTPFE 1977
TPQQNG+VERKH+HLL++ RAL+FQS P W Y+I A + NRLP L K+PFE
Sbjct: 685 ETPQQNGIVERKHQHLLNVCRALLFQSQIPKTFWSYAIKHAVHIINRLPTRFLKQKSPFE 744
Query: 1978 VLYSKTPDYSGLKPFGCLCYATNVFPHKDKFTTRAHKCIFLGYLPNQKGYRLFDLTTEKV 2157
++Y PD L+ FGCL YA+ + + K RA KCIFLGY KGY L++L +
Sbjct: 745 MIYHHKPDLHDLRVFGCLAYASTLAAGRTKLAPRASKCIFLGYKSGTKGYVLYNLHSRFF 804
Query: 2158 LISRDVIFVEDQFPCP-----------IQTPNLSDTP---LPYLSVLEDSSSSNLEFIXX 2295
+SR+VIF E FP I T + +D L ++VLE +++
Sbjct: 805 SLSRNVIFHETVFPYSDFHKFSSNSDAILTESTNDFAHYELYPITVLETTNTHTPSEQLQ 864
Query: 2296 XXXXXXXXXXXXXXXXXXXVSHRPAYLNDFITNHVTDTAPCFHVASSVTSATHSYHHISP 2475
RP YLN + C+ SS ++ + H
Sbjct: 865 QPLTEEMQDIPVQPRVSTRQKFRPNYLNQY---------HCYSATSSNSACLYPLHSYLS 915
Query: 2476 L--FAPAYVSFLANVDSIQEPLSYSQARLDDNWVEAMSKELEALEFNGTWLLTELPPGKK 2649
+ Y +F ++ + EP +Y+QA D W +AM EL+AL N TW L LPPG+K
Sbjct: 916 YNKCSSNYTAFCLSISAHVEPSNYAQAITQDCWKQAMMTELDALNRNRTWSLVSLPPGRK 975
Query: 2650 AIGSKWVYKVKMNPDGTIDRYKARLVAKGYHQIHGVDYFDSFSPVAKLVTERFLIAVATQ 2829
IG KWVY++K DG++DR+KARLVAKG+ Q G+DYF++FSPVAKL T RFL+A+A+
Sbjct: 976 LIGCKWVYRIKYKADGSVDRHKARLVAKGFTQTEGIDYFETFSPVAKLTTVRFLLALAST 1035
Query: 2830 HHWGLHQLDINNAFLHGTLNEEVYMRPPEGYLAAKPGHVCLLKKSLYGLKQASREWNTAF 3009
++W LHQLD++NAFLHG L EEVYMRPP+G VC L+KSLYGLKQASR WN
Sbjct: 1036 NNWFLHQLDVDNAFLHGDLEEEVYMRPPQGLQLPDSKLVCKLEKSLYGLKQASRNWNQKL 1095
Query: 3010 CGSLIAYGFRQSSHDHCLFLKGDNTSFXXXXXXXXXXXXTGSNESDIAHLKHYLDGLFTI 3189
L+ G++QSS DH LF+K +S +G+N S+I +K +L F I
Sbjct: 1096 NSELLHLGYKQSSADHSLFIKKQGSSITILLVYVDDVVLSGNNFSEIQIVKQHLHQKFQI 1155
Query: 3190 KDLGYAKYFLGVEIARSEQGTYLCQRKYILDILRDTKMMDCKVASTPLPPGIKLIHGAGT 3369
KDLG K+FLG+E+ARS++G L QRKY L+++ ++ ++ K A TP P IKL G+
Sbjct: 1156 KDLGPLKFFLGLEVARSKKGIILNQRKYCLELIDESGLLGSKPAPTPADPAIKLHADHGS 1215
Query: 3370 PLSNPEQFRRLIGRLLYLNFTRPDIAFATQQLSQFVGQPHTSHWEATLHVLRYLKGCPSV 3549
L++P FRRLIGRLLYL TRPDI+F+ QQLSQFV QP H +A L ++RYLKG P +
Sbjct: 1216 LLNDPTSFRRLIGRLLYLTNTRPDISFSVQQLSQFVSQPREPHLQAALRIVRYLKGAPGL 1275
Query: 3550 GLFYSVSATCSLTAYSDADWGTCPDTRKSLTGYCVFYGNCLISWKTKKQTTVSRSSAEAE 3729
GLFY + A+SD+DW TC TRKS+TGYCVF G L+SWK+KKQ+TVSRSS+EAE
Sbjct: 1276 GLFYPAENHLRIQAFSDSDWATCSTTRKSVTGYCVFLGKSLVSWKSKKQSTVSRSSSEAE 1335
Query: 3730 YRALGTTVCELQWLYYIAQDLQLSLPTPIDLWCDNQAAMHIVANPVFHERTKHLDIDCHI 3909
YRAL + CELQWL +++ L + +P P ++ D+Q+A+ I NP FHERTKH+++DCH+
Sbjct: 1336 YRALASLTCELQWLKFLSDSLFVKIPAPFSVFSDSQSAIQIAKNPTFHERTKHIEVDCHL 1395
Query: 3910 VRNKFKDGFLLLKHVTSRHQLADIFTKALGCQAFQRILSKFGLQDFLRSPT 4062
+R K ++ L L HV S +QLAD FTK+L + F +SK GL + + PT
Sbjct: 1396 IRIKLQEELLHLIHVPSANQLADAFTKSLYPKLFLHAISKLGLSN-IHGPT 1445
Score = 159 bits (403), Expect(2) = 0.0
Identities = 124/477 (25%), Positives = 214/477 (44%), Gaps = 22/477 (4%)
Frame = +2
Query: 14 LYARNAKELWDDIAERFGGCNGPLLYQLKRDIANVTQGTLSITVYFTKLKRLWDELSCLD 193
++ +A E+W D+ +RF + + L+ ++ N QG L+++ Y+T+L+ LW ELS
Sbjct: 103 MWIESASEIWRDLCDRFSHGDKFRIADLQEELQNCKQGELTVSQYYTRLRILWKELSIYR 162
Query: 194 PLPPCTCET-------NKQLIDRDMKDKLIQFLMGLNDSHEHVRSQILIMDPLPNINKAY 352
+ C+C +K +RD D +I+FL GLND VRSQ+++M+P+P + + +
Sbjct: 163 TVLACSCPVACSCGIFSKIQKERD-DDCVIKFLRGLNDEFSQVRSQVMLMEPMPGLTRTF 221
Query: 353 SMLLTVEKQRTAQLEVSELIENSAMMSKVQGPIRDTPNRMG---NNSGPPHRNRGFHRMT 523
S++L E++ + E++A+ + R+ + G N G RG
Sbjct: 222 SLVLQQEREFGGPVPPIPQ-ESAALATFNDDSARNNSSTRGGFSNTRGGGRSGRG----N 276
Query: 524 KEEKAKLICEHCKGPGHDVNTCFKLHGIPDWFKKLKDQRGRQGVANLVDSTGAQNN---- 691
++ C CK H ++TCF+++G P ++ G+ S + NN
Sbjct: 277 NTGRSTRFCTKCKKTNHTIDTCFQIYGFPPGYR----TNGKSTSTTSNTSKSSVNNFDST 332
Query: 692 -KLGASTEGNPHPDMSNMIQQEVAKYLAGRMMGGSNLPSESNLSFAHFADFAGKHAPIDV 868
L ++T N +Y A + + +++ AH +
Sbjct: 333 TSLVSATSAKDDVTSQNTFNFSKDQYQALLGLLQQSQDPSPSVNSAHKCSVSTPGI---- 388
Query: 869 HFGLSMLGNLDNGSWILDMGDSRHMCSNPTLLSHITPISPHATICLPDGTTKSVTHSGHI 1048
NL SWILD G + H+C + + S + PI P ++ LP+ + +SG I
Sbjct: 389 --------NLFQSSWILDSGATDHICPSKSYFSSLIPIKP-VSVKLPNNQSVFACYSGTI 439
Query: 1049 RLSPHLHLHDVFVVPSFKYNLLSVAQLTQQANLKCIFFPTHCVFQDLHSDKILGTGKLHG 1228
L +L L++ VP F +L+S+ +L N IF C+ H+ K++G K
Sbjct: 440 HLG-NLTLYNALYVPDFSVHLISIPKLVTTLNCIVIFCEYDCIIVQRHTFKMIGAAKQQS 498
Query: 1229 RLYILQQTPVLSTPVSLAFNSDSSFPTQVLC-------NGSFELWHKKLGHASISLL 1378
L+ L L SL F++ + T VL + S +WH KLGH S +L
Sbjct: 499 GLFQL-----LQHNDSLGFSTTGNNCTTVLATTLNDNFSNSTSVWHAKLGHPSNKVL 550
>gb|KYP36109.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1115
Score = 781 bits (2017), Expect = 0.0
Identities = 410/890 (46%), Positives = 556/890 (62%), Gaps = 12/890 (1%)
Frame = +1
Query: 1438 CDVCHQSKQHRLPFSTSSIQTSDVFELLHIDVWGPYRAPSITNTPFLLNIVDDFSRATWT 1617
CDVCH +KQ +L +S SS + S +F+L+H+D+WGP+ SI + L I+DDFSR TW
Sbjct: 226 CDVCHFAKQKKLSYSPSSSRVSKIFDLIHMDIWGPFSKASIHGHKYFLTILDDFSRYTWV 285
Query: 1618 FLMSHKSHTPKLLAQFLAMVHNHFQKSVKFIRTDNGTEFLSLECQTLFSAHGIIHQKTCT 1797
L+ KS + F+ +V N ++ VK IR+DNG EF + F++ GIIHQ +C
Sbjct: 286 VLLKSKSEVKTHVHNFINLVENQYETKVKCIRSDNGPEFF---LRDFFNSKGIIHQTSCV 342
Query: 1798 YTPQQNGVVERKHRHLLDIARALMFQSNAPSHLWPYSILTATFLTNRLPVSVLHWKTPFE 1977
YTPQQNG VERKH+H+L++ARALMFQS PS+ W Y+I A FL NR+P ++ KTPFE
Sbjct: 343 YTPQQNGRVERKHQHILNVARALMFQSKLPSNFWSYAIKHAIFLINRVPSPIISHKTPFE 402
Query: 1978 VLYSKTPDYSGLKPFGCLCYATNVFPHKDKFTTRAHKCIFLGYLPNQKGYRLFDLTTEKV 2157
+L PD+S LK FGCLCYA+ + KF R+ K IF+G+ KG+ + D+ T ++
Sbjct: 403 LLNKIPPDFSMLKVFGCLCYAST-HNQRHKFEPRSRKGIFMGFQNGTKGFVILDINTREI 461
Query: 2158 LISRDVIFVEDQFPCP--------IQTPNLSDTPLPYLSVLEDSS---SSNLEFIXXXXX 2304
L+SR+VIF E FP I P+L+ +P P + +S +S +
Sbjct: 462 LVSRNVIFHETSFPFHTSAPTSPFITQPSLTISPNPDILTTPPTSPNDTSPSQNPNPDAS 521
Query: 2305 XXXXXXXXXXXXXXXXVSHRPAYLNDFITNHVTDTAPCFHVASSVTSATHSYHHISPLFA 2484
+S P + I H ++P ++ S I P
Sbjct: 522 ASPSSPAAPTSPFHDSISSYPTSTDFDIVPHHRSSSP------AIPPPRRSERDIHP--- 572
Query: 2485 PAYVS-FLANVDSIQEPLSYSQARLDDNWVEAMSKELEALEFNGTWLLTELPPGKKAIGS 2661
P Y+S + + S++ S +++ + W EAM+ EL+ALE N TW + E P + IG
Sbjct: 573 PPYLSEYQYKLPSLKSVQSSTRSIQNPCWREAMTCELKALELNHTWDVVETPSHVRPIGC 632
Query: 2662 KWVYKVKMNPDGTIDRYKARLVAKGYHQIHGVDYFDSFSPVAKLVTERFLIAVATQHHWG 2841
KWV+K+K P+G+I+RYKARLVAKGY QI G+DYF++FSPV K+ T R ++A+A+ + W
Sbjct: 633 KWVFKIKRLPNGSIERYKARLVAKGYSQIEGIDYFETFSPVVKMTTVRVVLALASINQWH 692
Query: 2842 LHQLDINNAFLHGTLNEEVYMRPPEGYLAAKPGHVCLLKKSLYGLKQASREWNTAFCGSL 3021
+ QLD++NAFLHG L E+VYM P+G H C L+KSLYGLKQ+SR+W L
Sbjct: 693 IQQLDVSNAFLHGDLLEDVYMELPQGLTGYSSSHSCKLRKSLYGLKQSSRKWYEKLSNLL 752
Query: 3022 IAYGFRQSSHDHCLFLKGDNTSFXXXXXXXXXXXXTGSNESDIAHLKHYLDGLFTIKDLG 3201
++ G++Q+ DH LF K ++F TG++ ++I +KH L F +KDLG
Sbjct: 753 LSNGYKQAHSDHSLFTKRHGSAFTALLIYVDDIVLTGNSAAEITRIKHILHSNFHVKDLG 812
Query: 3202 YAKYFLGVEIARSEQGTYLCQRKYILDILRDTKMMDCKVASTPLPPGIKLIHGAGTPLSN 3381
KYFLG+E+A S +G LCQRKY LD+L D+ M+ CK +STP+ ++L A L +
Sbjct: 813 QLKYFLGIEVAHSSKGISLCQRKYCLDLLSDSGMLGCKPSSTPMDSTLRLHDDASGYLDD 872
Query: 3382 PEQFRRLIGRLLYLNFTRPDIAFATQQLSQFVGQPHTSHWEATLHVLRYLKGCPSVGLFY 3561
P +RRL+GRL+YL TRPDIAF+TQQLSQF+ +P +H A + VLRYLK CP GLF+
Sbjct: 873 PLPYRRLVGRLVYLTNTRPDIAFSTQQLSQFMSKPTNAHHAAAMRVLRYLKSCPGTGLFF 932
Query: 3562 SVSATCSLTAYSDADWGTCPDTRKSLTGYCVFYGNCLISWKTKKQTTVSRSSAEAEYRAL 3741
++ +SDADW TC +R+S+TGYC F GN LISWKTKKQTTVSRSS+EAEYRAL
Sbjct: 933 PRVCPIQVSGFSDADWATCVASRRSITGYCFFIGNALISWKTKKQTTVSRSSSEAEYRAL 992
Query: 3742 GTTVCELQWLYYIAQDLQLSLPTPIDLWCDNQAAMHIVANPVFHERTKHLDIDCHIVRNK 3921
+ CELQW+ Y+ +DL +SL L+CDN +A+HI ANPVFHERTKHLDIDCHIVR K
Sbjct: 993 ASATCELQWIIYLLRDLHISLSQISLLYCDNTSALHIAANPVFHERTKHLDIDCHIVREK 1052
Query: 3922 FKDGFLLLKHVTSRHQLADIFTKALGCQAFQRILSKFGLQDFLRSPT*GG 4071
+ G + L V S QLADIFTKAL AF+ LSK LQ+ P GG
Sbjct: 1053 TQAGLMKLLPVPSAKQLADIFTKALPPHAFKLNLSKLQLQNIFAPPACGG 1102
Score = 79.7 bits (195), Expect = 2e-11
Identities = 64/207 (30%), Positives = 96/207 (46%), Gaps = 8/207 (3%)
Frame = +2
Query: 785 GGSNLPSESNLSFAHFADFAGKHAPIDVHFGLSMLGNLDNGS----WILDMGDSRHMCSN 952
G S PS +NLS + F ++ L+N S WI+D G + H+ ++
Sbjct: 13 GSSETPSRANLSHSTPNQSHDSGLGSRSIFSINTTHTLNNLSHTTPWIIDSGATDHITTS 72
Query: 953 PTLLSHITPISPHATICLPDGTTKSVTHSGHIRLSPHLHLHDVFVVPSFKYNLLSVAQLT 1132
L + I P I LP+G+ SG I+LSP +HDV VP+F +NLLS+ +L
Sbjct: 73 IDLFFKYSEIKP-LNINLPNGSIVQAHFSGSIQLSPDFVIHDVLFVPNFSFNLLSLPKLL 131
Query: 1133 QQANLKCIFFPTH----CVFQDLHSDKILGTGKLHGRLYILQQTPVLSTPVSLAFNSDSS 1300
A + IF C QD+++ K++G+ L L+ L + S ++
Sbjct: 132 LTAPCRVIFSNQFSNILCQIQDMNTLKMIGSANLKEGLFHLD--------IGKERRSSTN 183
Query: 1301 FPTQVLCNGSFELWHKKLGHASISLLN 1381
T N S LWH +LGH S + LN
Sbjct: 184 NATATPINNS-NLWHFRLGHLSSNRLN 209
>gb|KYP65734.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1013
Score = 763 bits (1970), Expect = 0.0
Identities = 407/905 (44%), Positives = 551/905 (60%), Gaps = 22/905 (2%)
Frame = +1
Query: 1396 KIPMYC*NHKNVAGCDVCHQSKQHRLPFSTSSIQTSDVFELLHIDVWGPYRAPSITNTPF 1575
+ P+ H +V CD+CH +KQ RLP S+ +++ V ELLH D+WGPY PS+ +
Sbjct: 107 QFPIVSYQHHDVP-CDICHFAKQKRLPHFISNTKSASVIELLHADIWGPYSIPSVFGHKY 165
Query: 1576 LLNIVDDFSRATWTFLMSHKSHTPKLLAQFLAMVHNHFQKSVKFIRTDNGTEFLSLECQT 1755
L +VDDFSR TW +M KS T + L F++ + FQ +K +RTDNG+EFL +
Sbjct: 166 FLTLVDDFSRFTWIVMMKSKSETRQHLTNFISYIETQFQTKLKCLRTDNGSEFLMHD--- 222
Query: 1756 LFSAHGIIHQKTCTYTPQQNGVVERKHRHLLDIARALMFQSNAPSHLWPYSILTATFLTN 1935
LF + GIIHQ +C TPQQNGVVERKH+H+L+ ARAL FQ++ P + W ++I A L N
Sbjct: 223 LFLSKGIIHQGSCVETPQQNGVVERKHQHILNTARALYFQASLPKNFWNFAIQHAVHLIN 282
Query: 1936 RLPVSVLHWKTPFEVLYSKTPDYSGLKPFGCLCYATNVFPHKDKFTTRAHKCIFLGYLPN 2115
R+P +L KTP++ L+ + P L+ FGCL YA+ + H+ KF RA K + LGY
Sbjct: 283 RIPSPLLDNKTPYQALHQRPPILVHLRSFGCLAYASTLQAHRTKFQPRAKKSVLLGYKEG 342
Query: 2116 QKGYRLFDLTTEKVLISRDVIFVEDQFP--CPIQTPNLSDTPLPYLSVLEDSSSSNLE-- 2283
KGY L+DL + + +SR+V F E FP P QT +P P SS +L+
Sbjct: 343 VKGYLLYDLHSHEFFMSRNVFFHEFTFPFHTPSQTSLTQPSPTPITIQTPISSPYDLDNH 402
Query: 2284 ---------FIXXXXXXXXXXXXXXXXXXXXXVSHRPAYLNDFITNHVTDTAPCFHVASS 2436
I + P+YL D+ H + AP + S
Sbjct: 403 VPPSPTSSTSIPPEQPHQPLSPAPAPSRHSTRMRQPPSYLKDY---HCSLLAPTGRINSF 459
Query: 2437 VTSATHSYHHISPLF-----APAYVSFLANVDSIQEPLSYSQARLDDNWVEAMSKELEAL 2601
S + H IS +P+Y F +V + EP +Y+QA D W+ AM EL AL
Sbjct: 460 --SGISTPHSISSTLTYDFCSPSYKQFCLSVSTNFEPHTYTQASKYDCWIMAMKTELAAL 517
Query: 2602 EFNGTWLLTELPPGKKAIGSKWVYKVKMNPDGTIDRYKARLVAKGYHQIHGVDYFDSFSP 2781
+ N TW + +LP GK+ IG KWVYK+K DG+I+RYKARLVAKGY Q G+DY D++SP
Sbjct: 518 DMNQTWSIVDLPSGKRPIGCKWVYKIKYLSDGSIERYKARLVAKGYSQTEGLDYLDTYSP 577
Query: 2782 VAKLVTERFLIAVATQHHWGLHQLDINNAFLHGTLNEEVYMRPPEGYLAAKPGH----VC 2949
VAKL T R L+A+ W L QLD+NNAFLHG L+EEVYM P G + VC
Sbjct: 578 VAKLTTVRVLLALTAIKGWFLEQLDVNNAFLHGDLHEEVYMTLPPGLSVPSSSNTAPKVC 637
Query: 2950 LLKKSLYGLKQASREWNTAFCGSLIAYGFRQSSHDHCLFLKGDNTSFXXXXXXXXXXXXT 3129
L KS+YGLKQASR+W + +LI+ G+ S+ DH LF+K ++ F
Sbjct: 638 KLHKSIYGLKQASRQWYSKLSSALISMGYSPSTADHSLFIKSSSSHFTALLVYVDDIILA 697
Query: 3130 GSNESDIAHLKHYLDGLFTIKDLGYAKYFLGVEIARSEQGTYLCQRKYILDILRDTKMMD 3309
G+++ +I +K L F IKDLG +YFLG+EIARS +G L QRKY L+IL D +
Sbjct: 698 GNDKPEIDFIKAQLHKCFKIKDLGNLRYFLGLEIARSNKGILLNQRKYTLEILEDVGFLA 757
Query: 3310 CKVASTPLPPGIKLIHGAGTPLSNPEQFRRLIGRLLYLNFTRPDIAFATQQLSQFVGQPH 3489
K +STP P +KL G+P ++ +RRLIGRLLYL TRPDI++ QQLSQFV +P
Sbjct: 758 AKPSSTPFNPSLKLHSDHGSPYNDETAYRRLIGRLLYLTTTRPDISYVVQQLSQFVSKPL 817
Query: 3490 TSHWEATLHVLRYLKGCPSVGLFYSVSATCSLTAYSDADWGTCPDTRKSLTGYCVFYGNC 3669
H++A +LRYLKG GLFYS SA+ L+A++D+DW +C +RKS+TG+CVF G+
Sbjct: 818 DIHYQAATRILRYLKGSHGRGLFYSSSASLKLSAFADSDWASCSISRKSITGFCVFLGSS 877
Query: 3670 LISWKTKKQTTVSRSSAEAEYRALGTTVCELQWLYYIAQDLQLSLPTPIDLWCDNQAAMH 3849
LISW++KKQ+T+SRSS+EAEYRAL + CELQWL+Y+ DL+ SL P ++CDN++A++
Sbjct: 878 LISWRSKKQSTISRSSSEAEYRALASLTCELQWLHYLFNDLKTSLNFPTSVFCDNKSAIY 937
Query: 3850 IVANPVFHERTKHLDIDCHIVRNKFKDGFLLLKHVTSRHQLADIFTKALGCQAFQRILSK 4029
+ NP FHERTKH++IDCH++R K + L L V S QLAD FTK L +F +SK
Sbjct: 938 LAHNPTFHERTKHIEIDCHVIREKIQSRLLHLLPVPSSSQLADAFTKPLHATSFNSFVSK 997
Query: 4030 FGLQD 4044
GL D
Sbjct: 998 LGLYD 1002
>gb|KHN01991.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Glycine soja]
Length = 1311
Score = 768 bits (1982), Expect = 0.0
Identities = 403/893 (45%), Positives = 549/893 (61%), Gaps = 27/893 (3%)
Frame = +1
Query: 1438 CDVCHQSKQHRLPFSTSSIQTSDVFELLHIDVWGPYRAPSITNTPFLLNIVDDFSRATWT 1617
C+ CH +K +LPFS+S+ S +F LLH+D+WGP PS+ + L IVDD SR TW
Sbjct: 433 CNTCHYAKHKKLPFSSSTSHASHIFYLLHVDIWGPCSKPSMHGHKYFLTIVDDHSRFTWV 492
Query: 1618 FLMSHKSHTPKLLAQFLAMVHNHFQKSVKFIRTDNGTEFLSLECQTLFSAHGIIHQKTCT 1797
LM K+ T ++ F+A V + K +K IR+DNG EFL + +++ GI+HQ TC
Sbjct: 493 HLMHTKAETRDIIVNFIASVETQYNKKIKKIRSDNGYEFLM---PSFYASKGIMHQTTCV 549
Query: 1798 YTPQQNGVVERKHRHLLDIARALMFQSNAPSHLWPYSILTATFLTNRLPVSVLHWKTPFE 1977
TP+QNG+ ERKH+HLL++ RAL+FQ+N PS+ W Y++L AT+L N +P LH +P+E
Sbjct: 550 ETPEQNGIAERKHQHLLNVTRALLFQANLPSNFWCYALLHATYLVNCIPTPFLHNVSPYE 609
Query: 1978 VLYSKTPDYSGLKPFGCLCYATNVFPHKDKFTTRAHKCIFLGYLPNQKGYRLFDLTTEKV 2157
L+ P+ S L+ FGCLCYA+ + ++ K RAH CIF+G+ + KGY +++L +
Sbjct: 610 KLHGHLPEISHLRVFGCLCYASTLKANRKKLDPRAHPCIFIGFKASTKGYLVYNLHLHSI 669
Query: 2158 LISRDVIFVEDQFPCPIQTPNL---SDTPLPYL---------------SVLEDSSSSNLE 2283
+ SR+V+F ED F +T + S T LP V+++++
Sbjct: 670 ITSRNVVFYEDHFSQIPETQSSHPESSTILPKSFNISPHDPIIEKPPQPVIQETTDHTPL 729
Query: 2284 FIXXXXXXXXXXXXXXXXXXXXXVSHRPAYLNDF---ITNHVT--DTAPCFHVAS--SVT 2442
+ H P YL D+ +++H T T+ + ++S S +
Sbjct: 730 QLTSTDESAFSQRTKHEPRRSTRPKHAPTYLQDYHHSLSSHDTKVSTSSRYPLSSVLSYS 789
Query: 2443 SATHSYHHISPLFAPAYVSFLANVDSIQEPLSYSQARLDDNWVEAMSKELEALEFNGTWL 2622
+H++ H F+ ++ S EP SY++A D W++AM EL+AL+ N TW
Sbjct: 790 RLSHTHKH-----------FVMSISSTVEPSSYAEASQYDCWIKAMEAELQALQSNNTWK 838
Query: 2623 LTELPPGKKAIGSKWVYKVKMNPDGTIDRYKARLVAKGYHQIHGVDYFDSFSPVAKLVTE 2802
LT LPP K AIG +WVYK+K DG+I+RYKARLVAKGY Q+ G+DY +FSPVAKL
Sbjct: 839 LTLLPPHKTAIGCRWVYKIKHRADGSIERYKARLVAKGYTQMEGLDYLYAFSPVAKLTIV 898
Query: 2803 RFLIAVATQHHWGLHQLDINNAFLHGTLNEEVYMRPPEGYLAAKPGHVCLLKKSLYGLKQ 2982
R L+A+ + W L QLD+NNAFLHG L+EEVYM+ P G VC L++SLY LKQ
Sbjct: 899 RLLLAMVAFNQWHLRQLDVNNAFLHGELDEEVYMQVPPGLSVPNSQMVCRLQRSLYELKQ 958
Query: 2983 ASREWNTAFCGSLIAYGFRQSSHDHCLFLKGDNTSFXXXXXXXXXXXXTGSNESDIAHLK 3162
ASR+W T G LI+ GF +S DH LFL+ + TG++ES+I +
Sbjct: 959 ASRQWFTKLSGLLISLGFEKSHSDHSLFLRFTGSIITALLVYVDDIILTGNSESEIQDVI 1018
Query: 3163 HYLDGLFTIKDLGYAKYFLGVEIARSEQGTYLCQRKYILDILRDTKMMDCKVASTPLPPG 3342
LD F IKDLG KYFLG+EIARS G +LCQRKY LDIL D+ M+ C+ TP+
Sbjct: 1019 KLLDQAFKIKDLGNLKYFLGMEIARSSSGIHLCQRKYTLDILSDSGMLGCQPNVTPMDYS 1078
Query: 3343 IKLIHGAGTPLSNP--EQFRRLIGRLLYLNFTRPDIAFATQQLSQFVGQPHTSHWEATLH 3516
KL AGTPLS +RRLIGRL+YL TRPDI +A QQLSQ++ P + H +A
Sbjct: 1079 TKLQATAGTPLSTEASSSYRRLIGRLIYLTNTRPDITYAVQQLSQYMSNPTSVHQQAAYR 1138
Query: 3517 VLRYLKGCPSVGLFYSVSATCSLTAYSDADWGTCPDTRKSLTGYCVFYGNCLISWKTKKQ 3696
+LRYLKG G+F S + T L A+SD+DW C D+RKS TG+ ++ G+ +SW++KKQ
Sbjct: 1139 ILRYLKGTSGSGIFLSATGTPQLRAFSDSDWAGCQDSRKSTTGFVIYLGSSPVSWQSKKQ 1198
Query: 3697 TTVSRSSAEAEYRALGTTVCELQWLYYIAQDLQLSLPTPIDLWCDNQAAMHIVANPVFHE 3876
+TVSRSS+EAEYRA+ TT CELQWL Y+ QD + + P ++CDNQ+A+ I NPVFHE
Sbjct: 1199 STVSRSSSEAEYRAMATTTCELQWLTYLLQDFRHNFTKPATIYCDNQSAIQIATNPVFHE 1258
Query: 3877 RTKHLDIDCHIVRNKFKDGFLLLKHVTSRHQLADIFTKALGCQAFQRILSKFG 4035
RTKH++IDCHIVR K G L L V S QLADIFTKAL FQ + +K G
Sbjct: 1259 RTKHIEIDCHIVRQKVTSGLLKLLPVPSSLQLADIFTKALPPTVFQNLCNKLG 1311
Score = 109 bits (273), Expect = 2e-20
Identities = 63/207 (30%), Positives = 104/207 (50%), Gaps = 6/207 (2%)
Frame = +2
Query: 8 AFLYARNAKELWDDIAERFGGCNGPLLYQLKRDIANVTQGTLSITVYFTKLKRLWDELSC 187
+ L+ A+++W D+ R+ + + L+++ + + QGTLS+T YFT+L+ +WDE+
Sbjct: 65 SILWMDKAEDIWRDLKTRYSQGDLLRISDLQQEASTLRQGTLSVTEYFTRLRVIWDEIEN 124
Query: 188 LDPLPPCTCETNKQ------LIDRDMKDKLIQFLMGLNDSHEHVRSQILIMDPLPNINKA 349
P P CTC + R ++D+ +QFL GLND + ++RS +L+MDP+P I K
Sbjct: 125 FRPDPACTCNVRCSCSAFAIIAQRKLEDRAMQFLRGLNDQYTNIRSHVLLMDPIPAITKI 184
Query: 350 YSMLLTVEKQRTAQLEVSELIENSAMMSKVQGPIRDTPNRMGNNSGPPHRNRGFHRMTKE 529
+S + E+Q L+ NS+ + P + N+
Sbjct: 185 FSYVAQQERQ---------LLGNSSPNLNFE------PKDVSINA--------------- 214
Query: 530 EKAKLICEHCKGPGHDVNTCFKLHGIP 610
AK IC +C GH N C+K HG+P
Sbjct: 215 --AKTICNYCGRIGHTENICYKKHGMP 239
Score = 63.5 bits (153), Expect = 2e-06
Identities = 44/156 (28%), Positives = 70/156 (44%)
Frame = +2
Query: 911 WILDMGDSRHMCSNPTLLSHITPISPHATICLPDGTTKSVTHSGHIRLSPHLHLHDVFVV 1090
WILD + H+ + + L I+P + LP+G THSG + LS + L +V +
Sbjct: 268 WILDSRATDHVTCSLSNLHSYECINP-VPVKLPNGHQVHATHSGIVHLSKSITLFNVLYM 326
Query: 1091 PSFKYNLLSVAQLTQQANLKCIFFPTHCVFQDLHSDKILGTGKLHGRLYILQQTPVLSTP 1270
P+F +NL+S+++L + IF T C+ QD + +G + LY L V
Sbjct: 327 PAFTFNLISISKLVSSTHCALIFSSTSCMLQDASTRTKIGIVEEKHGLYHLIPDQVNKVI 386
Query: 1271 VSLAFNSDSSFPTQVLCNGSFELWHKKLGHASISLL 1378
S + +LWH ++GH S L
Sbjct: 387 CSTIIHPKCKII-------PIDLWHFRMGHLSTERL 415
>gb|KHN05285.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Glycine soja]
Length = 1346
Score = 746 bits (1927), Expect(2) = 0.0
Identities = 398/889 (44%), Positives = 531/889 (59%), Gaps = 36/889 (4%)
Frame = +1
Query: 1438 CDVCHQSKQHRLPFSTSSIQTSDVFELLHIDVWGPYRAPSITNTPFLLNIVDDFSRATWT 1617
CD+CH +K +LPF S + F+L+H D+WGP S+ N + L VDD SR TW
Sbjct: 466 CDICHFAKHRKLPFVHSYHKAIKCFDLIHFDIWGPISIKSVHNHAYFLTAVDDHSRYTWI 525
Query: 1618 FLMSHKSHTPKLLAQFLAMVHNHFQKSVKFIRTDNGTEFLSLECQTLFSAHGIIHQKTCT 1797
LM +KS + F+ + + SVK IRTDNG EFL + +++ GI+HQ +C
Sbjct: 526 TLMKNKSEARLHVQNFIHFIKTQYNHSVKSIRTDNGPEFLMPD---FYASKGILHQTSCV 582
Query: 1798 YTPQQNGVVERKHRHLLDIARALMFQSNAPSHLWPYSILTATFLTNRLPVSVLHWKTPFE 1977
+PQQNG VERKH+ +L+I RAL+ QSN P W Y++ A ++ NR+P L K+P+
Sbjct: 583 DSPQQNGRVERKHQQILNIGRALLVQSNLPKSFWCYAVSHAVYIMNRVPAPNLQNKSPYT 642
Query: 1978 VLYSKTPDYSGLKPFGCLCYATNVFPHKDKFTTRAHKCIFLGYLPNQKGYRLFDLTTEKV 2157
+LY+ PD+ LK FG L +A+ + H+ K RA KC+FLGY KG L DL +
Sbjct: 643 LLYNTAPDFDTLKVFGSLVFASTLQSHRTKLDLRARKCVFLGYKSGVKGVVLLDLLNNSI 702
Query: 2158 LISRDVIFVEDQFPCPIQ-------------TPNLSDTPL----------------PYLS 2250
+SRDV E FP TPN SD L P+ S
Sbjct: 703 FLSRDVTHHEHIFPYQSSSPKTPWEYHSISPTPNDSDITLDSDISLDINAEQSPSPPHSS 762
Query: 2251 VLEDSSSSNLEFIXXXXXXXXXXXXXXXXXXXXXVSHR--PAYLNDFITNHVTDTAPCFH 2424
+ + S+ + + R P +L+D++ ++ T+P H
Sbjct: 763 LSPNISNDTVISDTSTSTPPPKDHNDSPLLHSKPIRQRRAPLHLSDYVCHN---TSPTSH 819
Query: 2425 VASSVTSATHSYHHISP-----LFAPAYVSFLANVDSIQEPLSYSQARLDDNWVEAMSKE 2589
S+TS T S + +S L +P++ +F ++ EP SY +A ++WV AM +E
Sbjct: 820 --ESLTSGTKSKYPLSSFHSLTLLSPSHKAFSMSITHCTEPQSYEEASKHEHWVTAMKEE 877
Query: 2590 LEALEFNGTWLLTELPPGKKAIGSKWVYKVKMNPDGTIDRYKARLVAKGYHQIHGVDYFD 2769
L AL N TW + ELPP K IG KWVYKVK +G I+RYKARLVAKGY+Q+ G+DYF+
Sbjct: 878 LNALAKNCTWKIVELPPHTKPIGCKWVYKVKHKANGQIERYKARLVAKGYNQVEGIDYFE 937
Query: 2770 SFSPVAKLVTERFLIAVATQHHWGLHQLDINNAFLHGTLNEEVYMRPPEGYLAAKPGHVC 2949
+FSPVAK+ T R L+AVA +W LHQLD+NNAFLHG L E+VYM+ P+G AKP VC
Sbjct: 938 TFSPVAKITTVRTLLAVAAIKNWHLHQLDVNNAFLHGDLQEDVYMKIPDGVTCAKPNSVC 997
Query: 2950 LLKKSLYGLKQASREWNTAFCGSLIAYGFRQSSHDHCLFLKGDNTSFXXXXXXXXXXXXT 3129
L+KSLYGLKQASR+W L+ G+ QS D+ LF +F
Sbjct: 998 KLQKSLYGLKQASRKWYEKLTNLLLKEGYIQSISDYSLFTLTKGNTFTALLVYVDDIILA 1057
Query: 3130 GSNESDIAHLKHYLDGLFTIKDLGYAKYFLGVEIARSEQGTYLCQRKYILDILRDTKMMD 3309
G + + +K+ LD F IK+LG KYFLG+E+A S G + QRKY LD+L+D+ ++
Sbjct: 1058 GDSIDEFDRIKNVLDLAFKIKNLGKLKYFLGLEVAHSRLGITISQRKYCLDLLKDSGLLG 1117
Query: 3310 CKVASTPLPPGIKLIHGAGTPLSNPEQFRRLIGRLLYLNFTRPDIAFATQQLSQFVGQPH 3489
CK ASTPL IKL AGTP ++ +RR++G+LLYLN TRPDIAFATQQLSQF+ P
Sbjct: 1118 CKPASTPLDTSIKLHSAAGTPYADISGYRRIVGKLLYLNTTRPDIAFATQQLSQFMQAPT 1177
Query: 3490 TSHWEATLHVLRYLKGCPSVGLFYSVSATCSLTAYSDADWGTCPDTRKSLTGYCVFYGNC 3669
H+ A VLRYLK P G+F+S ++ L YSDADW C D+RKS++GYC F G
Sbjct: 1178 NVHFNAACRVLRYLKNNPGQGIFFSRTSEMQLIGYSDADWAGCMDSRKSISGYCFFIGKS 1237
Query: 3670 LISWKTKKQTTVSRSSAEAEYRALGTTVCELQWLYYIAQDLQLSLPTPIDLWCDNQAAMH 3849
L+SW+ KKQ TVSRSS+EAEYRAL + CELQWL Y+ DL++ L L+CDNQ+A+H
Sbjct: 1238 LVSWRAKKQATVSRSSSEAEYRALSSAACELQWLLYLFADLRVQLTRTPTLYCDNQSAVH 1297
Query: 3850 IVANPVFHERTKHLDIDCHIVRNKFKDGFLLLKHVTSRHQLADIFTKAL 3996
I +NPVFHERTKHL+IDCH+VR K G L L V++ Q+AD TKAL
Sbjct: 1298 IASNPVFHERTKHLEIDCHLVREKLLKGTLKLLPVSTSDQVADFLTKAL 1346
Score = 154 bits (389), Expect(2) = 0.0
Identities = 125/462 (27%), Positives = 204/462 (44%), Gaps = 7/462 (1%)
Frame = +2
Query: 8 AFLYARNAKELWDDIAERFGGCNGPLLYQLKRDIANVTQGTLSITVYFTKLKRLWDELSC 187
+ ++ NA ++W D+ ERF + + +++++I +TQGT S+T +++ LK LW+EL
Sbjct: 66 SIVFMDNASDVWLDLKERFSQGDLVRVSEIQQEIYALTQGTRSVTTFYSDLKALWEELEI 125
Query: 188 LDPLPPCTCETN-----KQLIDRDMKD-KLIQFLMGLNDSHEHVRSQILIMDPLPNINKA 349
P+P CTC +L R +++FL GLND V+SQIL+++PLP+I K
Sbjct: 126 YMPIPNCTCHHRCSCDAMRLARRHHHTLHVMRFLTGLNDEFNAVKSQILLIEPLPSITKI 185
Query: 350 YSMLLTVEKQR-TAQLEVSELIENSAMMSKVQGPIRDTPNRMGNNSGPPHRNRGFHRMTK 526
+SM++ E+Q L+ S+ + N A SK QG +NSG
Sbjct: 186 FSMVIQFERQNCVPNLDDSKALVN-ASTSKSQGSANGR-----SNSG------------- 226
Query: 527 EEKAKLICEHCKGPGHDVNTCFKLHGIPDWFKKLKDQRGRQGVANLVDSTGAQNNKLGAS 706
+K C +C H V CF+ HG+P K + +G+ ++ ++
Sbjct: 227 ---SKRYCTYCHKTNHFVENCFQKHGVPPHMMK--------------NHSGSAHH---SA 266
Query: 707 TEGNPHPDMSNMIQQEVAKYLAGRMMGGSNLPSESNLSFAHFADFAGKHAPIDVHFGLSM 886
+G H + +HF F S+
Sbjct: 267 VDGGEH---------------------------TKGMKISHF-------------FYSSI 286
Query: 887 LGNLDNGSWILDMGDSRHMCSNPTLLSHITPISPHATICLPDGTTKSVTHSGHIRLSPHL 1066
N+ +WI+D G S H+C++ + I+P I LP+G + ++G + S
Sbjct: 287 CNNIALDTWIIDSGASHHICASLHWFHSYSEINP-MIIKLPNGNHVTTKYAGTVVFSSSF 345
Query: 1067 HLHDVFVVPSFKYNLLSVAQLTQQANLKCIFFPTHCVFQDLHSDKILGTGKLHGRLYILQ 1246
+ +V VP+F NL+SV+QL F T C Q+ S K++G G+ LY L
Sbjct: 346 SITNVLYVPTFTVNLISVSQLCHHTPYTLNFTDTICSIQEQKSLKMIGLGESRDGLYYLT 405
Query: 1247 QTPVLSTPVSLAFNSDSSFPTQVLCNGSFELWHKKLGHASIS 1372
QT + +S S V + +WH +LGH S S
Sbjct: 406 QTNKECASSNYNISSIFSSANNVHIPEN-AIWHFRLGHLSSS 446
>gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1461
Score = 717 bits (1852), Expect(2) = 0.0
Identities = 385/883 (43%), Positives = 526/883 (59%), Gaps = 8/883 (0%)
Frame = +1
Query: 1420 HKNVAGCDVCHQSKQHRLPFSTSSIQTSDVFELLHIDVWGPYRAPSITNTPFLLNIVDDF 1599
+K A C VCH +KQ +L F +++ + FELLHIDVWGP+ ++ + L IVDD
Sbjct: 595 NKKSAYCHVCHLAKQKKLSFPSANNICNSTFELLHIDVWGPFSVETVEGYKYFLTIVDDH 654
Query: 1600 SRATWTFLMSHKSHTPKLLAQFLAMVHNHFQKSVKFIRTDNGTEFLSLECQTLFSAHGII 1779
SRATW +L+ KS + F+ +V N + VK +R+DN E E + A GI+
Sbjct: 655 SRATWIYLLKSKSDVLTVFPAFIDLVENQYDTRVKSVRSDNAKELAFTE---FYKAKGIV 711
Query: 1780 HQKTCTYTPQQNGVVERKHRHLLDIARALMFQSNAPSHLWPYSILTATFLTNRLPVSVLH 1959
+C TP+QN VVERKH+H+L++ARALMFQSN W +LTA FL NR P ++L
Sbjct: 712 SFHSCPETPEQNSVVERKHQHILNVARALMFQSNMSLPYWGDCVLTAVFLINRTPSALLS 771
Query: 1960 WKTPFEVLYSKTPDYSGLKPFGCLCYATNVFPHKDKFTTRAHKCIFLGYLPNQKGYRLFD 2139
KTPFEVL K PDYS LK FGCLCY++ + KF R+ C+FLGY KGY+L D
Sbjct: 772 NKTPFEVLTGKLPDYSQLKTFGCLCYSSTSSKQRHKFLPRSRACVFLGYPFGFKGYKLLD 831
Query: 2140 LTTEKVLISRDVIFVEDQFPCPIQTPNLSDTPLPYLSVLEDSSSSNLEFIXXXXXXXXXX 2319
L + V ISR+V F E+ FP + + T + ++ SS N
Sbjct: 832 LESNVVHISRNVEFHEELFPLA-SSQQSATTASDVFTPMDPLSSGN----SITSHLPSPQ 886
Query: 2320 XXXXXXXXXXXVSHRPAYLNDFITNHVTDTAPCFHVA---SSVTSATHSYHHISPLFAPA 2490
++ PA+L D+ C+ V S S++ SY ISP +
Sbjct: 887 ISPSTQISKRRITKFPAHLQDY---------HCYFVNKDDSHPISSSLSYSQISP----S 933
Query: 2491 YVSFLANVDSIQEPLSYSQARLDDNWVEAMSKELEALEFNGTWLLTELPPGKKAIGSKWV 2670
++ ++ N+ I P SY +A+ W A+ +E+ A+E TW +T LPPGKKA+G KWV
Sbjct: 934 HMLYINNISKIPIPQSYHEAKDSKEWCGAIDQEIGAMERTDTWEITSLPPGKKAVGCKWV 993
Query: 2671 YKVKMNPDGTIDRYKARLVAKGYHQIHGVDYFDSFSPVAKLVTERFLIAVATQHHWGLHQ 2850
+ VK + DG+++R+KAR+VAKGY Q G+DY ++FSPVAK+ T + L+ V+ W L+Q
Sbjct: 994 FTVKFHADGSLERFKARIVAKGYTQKEGLDYTETFSPVAKMATVKLLLKVSASKKWYLNQ 1053
Query: 2851 LDINNAFLHGTLNEEVYMRPPEGYLAAK-----PGHVCLLKKSLYGLKQASREWNTAFCG 3015
LDI+NAFL+G L E +YM+ P+GY K P VC LKKS+YGLKQASR+W F
Sbjct: 1054 LDISNAFLNGDLEETIYMKLPDGYADIKGTSLPPNVVCRLKKSIYGLKQASRQWFLKFSN 1113
Query: 3016 SLIAYGFRQSSHDHCLFLKGDNTSFXXXXXXXXXXXXTGSNESDIAHLKHYLDGLFTIKD 3195
SL+A GF + DH LF++ + F + E L L F +++
Sbjct: 1114 SLLALGFEKQHGDHTLFVRCIGSEFIVLLVYVDDIVIASTTEQAAQSLTEALKASFKLRE 1173
Query: 3196 LGYAKYFLGVEIARSEQGTYLCQRKYILDILRDTKMMDCKVASTPLPPGIKLIHGAGTPL 3375
LG KYFLG+E+AR+ +G L QRKY L++L M+DCK +S P+ P I+L G L
Sbjct: 1174 LGPLKYFLGLEVARTSEGISLSQRKYALELLTSADMLDCKPSSIPMTPNIRLSKNDGLLL 1233
Query: 3376 SNPEQFRRLIGRLLYLNFTRPDIAFATQQLSQFVGQPHTSHWEATLHVLRYLKGCPSVGL 3555
+ E +RRL+G+L+YL TRPDI FA +L QF P T+H A VL+Y+KG GL
Sbjct: 1234 EDKEMYRRLVGKLMYLTITRPDITFAVNKLCQFSSAPRTAHLAAVYKVLQYIKGTVGQGL 1293
Query: 3556 FYSVSATCSLTAYSDADWGTCPDTRKSLTGYCVFYGNCLISWKTKKQTTVSRSSAEAEYR 3735
FYS +L Y+DADWGTCPD+R+S TG+ +F G+ LISW++KKQ TVSRSSAEAEYR
Sbjct: 1294 FYSAEDDLTLKGYTDADWGTCPDSRRSTTGFTMFVGSSLISWRSKKQPTVSRSSAEAEYR 1353
Query: 3736 ALGTTVCELQWLYYIAQDLQLSLPTPIDLWCDNQAAMHIVANPVFHERTKHLDIDCHIVR 3915
AL CE+ WL + L++ PI L+ D+ AA++I NPVFHERTKH++IDCH VR
Sbjct: 1354 ALALASCEMAWLSTLLLALRVHSGVPI-LYSDSTAAVYIATNPVFHERTKHIEIDCHTVR 1412
Query: 3916 NKFKDGFLLLKHVTSRHQLADIFTKALGCQAFQRILSKFGLQD 4044
K +G L L HV ++ Q+ADI TK L F +LSK +Q+
Sbjct: 1413 EKLDNGQLKLLHVKTKDQVADILTKPLFPYQFAHLLSKMSIQN 1455
Score = 169 bits (429), Expect(2) = 0.0
Identities = 135/478 (28%), Positives = 214/478 (44%), Gaps = 18/478 (3%)
Frame = +2
Query: 8 AFLYARNAKELWDDIAERFGGCNGPLLYQLKRDIANVTQGTLSITVYFTKLKRLWDELSC 187
+ L +A ++W D+ +RF N P Y L ++I ++ QGT+S++ Y+T LK LWD+L
Sbjct: 147 SILRLNDATDIWRDLFDRFNLTNLPRTYNLTQEIQDLRQGTMSLSEYYTLLKTLWDQLDS 206
Query: 188 LDPLP-PCTCETNKQLIDRDMKDKLIQFLMGLNDSHEHVRSQILIMDPLPNINKAYSMLL 364
+ L PCTC +L + K K+++FL GLN+S+ VR QI+ LP++ + Y +L
Sbjct: 207 TEALDDPCTCGKAVRLYQKAEKAKIMKFLAGLNESYAIVRRQIIAKKALPSLAEVYHIL- 265
Query: 365 TVEKQRTAQLEVSELIENSA--MMSKVQGPIRDTPNRMGNNSGPPHRNRGFHRMTKEEKA 538
Q +Q ++ A +S+V +P M SGP K
Sbjct: 266 ---DQDNSQKGFFNVVAPPAAFQVSEVSHSPITSPEIMYVQSGP-------------NKG 309
Query: 539 KLICEHCKGPGHDVNTCFKLHGIPDWFK---KLKDQRGR-QGVANLVDSTGAQNNKLGAS 706
+ C C GH C+K HG P F K D+ + Q VA V + + +
Sbjct: 310 RPTCSFCNRVGHIAERCYKKHGFPPGFTPKGKSSDKPPKPQAVAAQVTLSPDKMTGQLET 369
Query: 707 TEGNPHPDMSNMIQQEVAKYLAGRMMGGSNLPSESNLSFAHFADFAGKHAPIDVHFGLSM 886
GN PD IQ +A + + + S S H A + AP + F S
Sbjct: 370 LAGNFSPDQ---IQNLIALFSSQLQ---PQIVSPQTASSQHEASSSQSVAPSGILFSPST 423
Query: 887 L----------GNLDNGSWILDMGDSRHMCSNPTLLSHITPISPHATICLPDGTTKSVTH 1036
+L + +W++D G + H+ S+ L S + + LP G ++
Sbjct: 424 YCFIGILAVSHNSLSSDTWVIDSGATHHV-SHDRKLFQTLDTSIVSFVNLPTGPNVRISG 482
Query: 1037 SGHIRLSPHLHLHDVFVVPSFKYNLLSVAQLTQQANLKCIFFPTHCVFQDLHSDKILGTG 1216
G + ++ + L +V +P F+ NL+S++ LT + IF P+ C QDL LG G
Sbjct: 483 VGTVLINKDIILQNVLFIPEFRLNLISISSLTTDLGTRVIFDPSCCQIQDLTKGLTLGEG 542
Query: 1217 KLHGRLYILQ-QTPVLSTPVSLAFNSDSSFPTQVLCNGSFELWHKKLGHASISLLNHI 1387
K G LY+L Q+P +S + +WHK+LGH S S L+ +
Sbjct: 543 KRIGNLYVLDTQSPAISVNAVV----------------DVSVWHKRLGHPSFSRLDSL 584
>emb|CAN82526.1| hypothetical protein VITISV_028058 [Vitis vinifera]
Length = 1125
Score = 748 bits (1930), Expect = 0.0
Identities = 404/883 (45%), Positives = 520/883 (58%), Gaps = 8/883 (0%)
Frame = +1
Query: 1438 CDVCHQSKQHRLPFSTSSIQTSDVFELLHIDVWGPYRAPSITNTPFLLNIVDDFSRATWT 1617
CDVC +KQ +LPFS SSI + FEL+H D+WGPY+ S++ + L IVDD+SR T
Sbjct: 283 CDVCALAKQRQLPFSVSSISSVRPFELIHCDIWGPYKIASLSGAKYFLTIVDDYSRFTXV 342
Query: 1618 FLMSHKSHTPKLLAQFLAMVHNHFQKSVKFIRTDNGTEFLSLECQTLFSAHGIIHQKTCT 1797
F M HKS T LL F + V F S+ IR DNG EF S + F G +Q +C
Sbjct: 343 FFMHHKSETQHLLVNFFSFVQTQFHVSIANIRVDNGGEFFSX--REFFKQKGTTYQHSCV 400
Query: 1798 YTPQQNGVVERKHRHLLDIARALMFQSNAPSHLWPYSILTATFLTNRLPVSVLHWKTPFE 1977
YTPQQNGVVERKHRH+L+ ARA FQ++ P W + TA + NRLP +L +TPFE
Sbjct: 401 YTPQQNGVVERKHRHILESARAFXFQAHLPLPFWAECVSTAVHIINRLPTPLLSRQTPFE 460
Query: 1978 VLYSKTPDYSGLKPFGCLCYATNVF-PHKDKFTTRAHKCIFLGYLPNQKGYRLFDLTTEK 2154
LY K P YS ++ FGCL YATNV PHK F RA +CIFLGY QK Y+L+DL T +
Sbjct: 461 RLYGKLPSYSHIRVFGCLAYATNVHVPHK--FAPRAKRCIFLGYPVGQKAYKLYDLDTHQ 518
Query: 2155 VLISRDVIFVEDQFPCPIQTPNLSDTPLPYLSVLEDSSSSNLEFIXXXXXXXXXXXXXXX 2334
+ SRDV+F E FP Y S+ SS+S+ +
Sbjct: 519 MFTSRDVVFHETIFP--------------YESIPSPSSNSDPFLLSHHLASPPPEPILRR 564
Query: 2335 XXXXXXVSHRPAYLNDFITNHVTDTAPCFHVASSVTSATH-------SYHHISPLFAPAY 2493
H P L D++ N VT ++SS T SYH ++P +
Sbjct: 565 SQRPH---HPPMALRDYVCNQVTSPNHLPPLSSSPQKGTRYPLCNFVSYHR----YSPQH 617
Query: 2494 VSFLANVDSIQEPLSYSQARLDDNWVEAMSKELEALEFNGTWLLTELPPGKKAIGSKWVY 2673
SF A V EP SY++A +W EAM EL LE N TW LT LPPGKK IG +WVY
Sbjct: 618 RSFTAAVSQDIEPTSYAEATSHSHWQEAMQSELATLEANHTWSLTSLPPGKKPIGCRWVY 677
Query: 2674 KVKMNPDGTIDRYKARLVAKGYHQIHGVDYFDSFSPVAKLVTERFLIAVATQHHWGLHQL 2853
K+K + DGTI+R+KARLVAKGY Q+ G+DY D+FSP AK++ R L+A+A +W LHQL
Sbjct: 678 KIKXHSDGTIERFKARLVAKGYTQLEGIDYHDTFSPTAKMIXVRCLLALAAAQNWSLHQL 737
Query: 2854 DINNAFLHGTLNEEVYMRPPEGYLAAKPGHVCLLKKSLYGLKQASREWNTAFCGSLIAYG 3033
D +M PP VC L KSLYGLKQASR+W F ++ A G
Sbjct: 738 D-------------KFMSPPPSLRRQGENLVCHLHKSLYGLKQASRQWFAKFSTAIQAVG 784
Query: 3034 FRQSSHDHCLFLKGDNTSFXXXXXXXXXXXXTGSNESDIAHLKHYLDGLFTIKDLGYAKY 3213
F QS D+ LF SF TG++ + I LK +L F IKDLG KY
Sbjct: 785 FIQSKADYSLFTCRKGKSFTALLIYVDDILITGNDVNAIVALKQFLHSHFRIKDLGDLKY 844
Query: 3214 FLGVEIARSEQGTYLCQRKYILDILRDTKMMDCKVASTPLPPGIKLIHGAGTPLSNPEQF 3393
FLG+E++RS++G + QRKY L+IL+D + K + P+ KL +G L P Q+
Sbjct: 845 FLGIEVSRSKKGISISQRKYTLEILKDGGFLGAKPVNFPMEQNTKL-SDSGELLKGPSQY 903
Query: 3394 RRLIGRLLYLNFTRPDIAFATQQLSQFVGQPHTSHWEATLHVLRYLKGCPSVGLFYSVSA 3573
RRL+GRL+YL TRPDI ++ LS+F+ P H EA L VLRYLK P GLF+
Sbjct: 904 RRLVGRLIYLTITRPDITYSVHVLSRFMHAPRRPHMEAALRVLRYLKNSPGQGLFFPSQN 963
Query: 3574 TCSLTAYSDADWGTCPDTRKSLTGYCVFYGNCLISWKTKKQTTVSRSSAEAEYRALGTTV 3753
SL A+SD DW CP +R+S TGYCVF G+ LISW+TK+Q TVS SS EAEYRA+ T
Sbjct: 964 DLSLRAFSDXDWAGCPISRRSXTGYCVFLGSSLISWRTKRQKTVSLSSXEAEYRAMAGTC 1023
Query: 3754 CELQWLYYIAQDLQLSLPTPIDLWCDNQAAMHIVANPVFHERTKHLDIDCHIVRNKFKDG 3933
CEL WL + +DL++ P P L+CDN AA+HI NPVFHERT+H+++DCH +R+K +DG
Sbjct: 1024 CELSWLRSLLKDLRILHPKPALLYCDNTAALHIAVNPVFHERTRHIEMDCHFIRDKIQDG 1083
Query: 3934 FLLLKHVTSRHQLADIFTKALGCQAFQRILSKFGLQDFLRSPT 4062
++ KH+ S Q AD+FTK LG + F ++ K G+ D + SPT
Sbjct: 1084 SVVTKHIASTDQXADVFTKPLGKETFSTMIHKLGVLD-IHSPT 1125
Score = 89.0 bits (219), Expect = 4e-14
Identities = 57/160 (35%), Positives = 86/160 (53%), Gaps = 4/160 (2%)
Frame = +2
Query: 914 ILDMGDSRHMCSNPTLLSHITPISPHATICLPDGTTKSVTHSGHIRLSPHLHLHDVFVVP 1093
I+D G + H+ S+PTLL + + + + +P G +T G++ L+ L +V VP
Sbjct: 110 IIDSGATDHITSSPTLLVNSSKNTFLPPVAMPSGEQAPITSIGNLPLNSAATLKNVLGVP 169
Query: 1094 SFKYNLLSVAQLTQQANLKCIFFPTHCVFQDLHSDKILGTGKLHGRLYIL----QQTPVL 1261
SFK +L+SV+++T+ N FFP C+ QDL + +G G+ LY L + P
Sbjct: 170 SFKVDLMSVSRVTKDLNCSVTFFPHWCILQDLTTRTTIGLGEQRDGLYYLVALASEKPKT 229
Query: 1262 STPVSLAFNSDSSFPTQVLCNGSFELWHKKLGHASISLLN 1381
TP S A S S +QV S LWH++LGH S S L+
Sbjct: 230 QTP-SAATTSCRSPSSQV--TSSTALWHRRLGHLSSSRLD 266
>gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1454
Score = 712 bits (1838), Expect(2) = 0.0
Identities = 379/880 (43%), Positives = 528/880 (60%), Gaps = 7/880 (0%)
Frame = +1
Query: 1420 HKNVAG--CDVCHQSKQHRLPFSTSSIQTSDVFELLHIDVWGPYRAPSITNTPFLLNIVD 1593
HKN C VCH +KQ +L F TS+ ++F+LLHIDVWGP+ ++ + L IVD
Sbjct: 582 HKNKGSDFCHVCHLAKQRKLSFPTSNKVCKEIFDLLHIDVWGPFSVETVEGYKYFLTIVD 641
Query: 1594 DFSRATWTFLMSHKSHTPKLLAQFLAMVHNHFQKSVKFIRTDNGTEFLSLECQTLFSAHG 1773
D SRATW +L+ KS + F+ V N ++ VK +R+DN E L+ + ++ G
Sbjct: 642 DHSRATWMYLLKTKSEVLTVFPAFIQQVENQYKVKVKAVRSDNAPE---LKFTSFYAEKG 698
Query: 1774 IIHQKTCTYTPQQNGVVERKHRHLLDIARALMFQSNAPSHLWPYSILTATFLTNRLPVSV 1953
I+ +C TP+QN VVERKH+H+L++ARALMFQS P LW +LTA FL NR P +
Sbjct: 699 IVSFHSCPETPEQNSVVERKHQHILNVARALMFQSQVPLSLWGDCVLTAVFLINRTPSQL 758
Query: 1954 LHWKTPFEVLYSKTPDYSGLKPFGCLCYATNVFPHKDKFTTRAHKCIFLGYLPNQKGYRL 2133
L KTP+E+L P Y L+ FGCLCY++ + KF R+ C+FLGY KGY+L
Sbjct: 759 LMNKTPYEILTGTAPVYEQLRTFGCLCYSSTSPKQRHKFQPRSRACLFLGYPSGYKGYKL 818
Query: 2134 FDLTTEKVLISRDVIFVEDQFPCPIQTPNLSDTPLPYLSVLEDSSSSNLEFIXXXXXXXX 2313
DL + V ISR+V F E+ FP + P + + ++ SS +
Sbjct: 819 MDLESNTVFISRNVQFHEEVFPLA-KNPGSESSLKLFTPMVPVSSGIISDTTHSPSSLPS 877
Query: 2314 XXXXXXXXXXXXXVSHRPAYLNDFITNHVTDTAPCFHVASSVTSATHSYHHISPLFAPAY 2493
V PA+LND+ N T H S+T SY ISP ++
Sbjct: 878 QISDLPPQISSQRVRKPPAHLNDYHCN----TMQSDH--KYPISSTISYSKISP----SH 927
Query: 2494 VSFLANVDSIQEPLSYSQARLDDNWVEAMSKELEALEFNGTWLLTELPPGKKAIGSKWVY 2673
+ ++ N+ I P +Y++A+ W EA+ E+ A+E TW +T LP GKKA+G KWV+
Sbjct: 928 MCYINNITKIPIPTNYAEAQDTKEWCEAVDAEIGAMEKTNTWEITTLPKGKKAVGCKWVF 987
Query: 2674 KVKMNPDGTIDRYKARLVAKGYHQIHGVDYFDSFSPVAKLVTERFLIAVATQHHWGLHQL 2853
+K DG ++RYKARLVAKGY Q G+DY D+FSPVAK+ T + L+ V+ W L QL
Sbjct: 988 TLKFLADGNLERYKARLVAKGYTQKEGLDYTDTFSPVAKMTTIKLLLKVSASKKWFLKQL 1047
Query: 2854 DINNAFLHGTLNEEVYMRPPEGYLAAK----PGHVCL-LKKSLYGLKQASREWNTAFCGS 3018
D++NAFL+G L EE++M+ PEGY K P +V L LK+S+YGLKQASR+W F S
Sbjct: 1048 DVSNAFLNGELEEEIFMKIPEGYAERKGIVLPSNVVLRLKRSIYGLKQASRQWFKKFSSS 1107
Query: 3019 LIAYGFRQSSHDHCLFLKGDNTSFXXXXXXXXXXXXTGSNESDIAHLKHYLDGLFTIKDL 3198
L++ GF+++ DH LFLK + F ++E+ A L LD F ++DL
Sbjct: 1108 LLSLGFKKTHGDHTLFLKMYDGEFVIVLVYVDDIVIASTSEAAAAQLTEELDQRFKLRDL 1167
Query: 3199 GYAKYFLGVEIARSEQGTYLCQRKYILDILRDTKMMDCKVASTPLPPGIKLIHGAGTPLS 3378
G KYFLG+E+AR+ G +CQRKY L++L+ T M+ CK S P+ P +K+ G +
Sbjct: 1168 GDLKYFLGLEVARTTAGISICQRKYALELLQSTGMLACKPVSVPMIPNLKMRKDDGDLIE 1227
Query: 3379 NPEQFRRLIGRLLYLNFTRPDIAFATQQLSQFVGQPHTSHWEATLHVLRYLKGCPSVGLF 3558
+ EQ+RR++G+L+YL TRPDI FA +L QF P T+H A VL+Y+KG GLF
Sbjct: 1228 DIEQYRRIVGKLMYLTITRPDITFAVNKLCQFSSAPRTTHLTAAYRVLQYIKGTVGQGLF 1287
Query: 3559 YSVSATCSLTAYSDADWGTCPDTRKSLTGYCVFYGNCLISWKTKKQTTVSRSSAEAEYRA 3738
YS S+ +L ++D+DW +C D+R+S T + +F G+ LISW++KKQ TVSRSSAEAEYRA
Sbjct: 1288 YSASSDLTLKGFADSDWASCQDSRRSTTSFTMFVGDSLISWRSKKQHTVSRSSAEAEYRA 1347
Query: 3739 LGTTVCELQWLYYIAQDLQLSLPTPIDLWCDNQAAMHIVANPVFHERTKHLDIDCHIVRN 3918
L CE+ WL+ + LQ S P PI L+ D+ AA++I NPVFHERTKH+ +DCH VR
Sbjct: 1348 LALATCEMVWLFTLLVSLQASPPVPI-LYSDSTAAIYIATNPVFHERTKHIKLDCHTVRE 1406
Query: 3919 KFKDGFLLLKHVTSRHQLADIFTKALGCQAFQRILSKFGL 4038
+ +G L L HV + Q+ADI TK L F+ + SK +
Sbjct: 1407 RLDNGELKLLHVRTEDQVADILTKPLFPYQFEHLKSKMSI 1446
Score = 166 bits (420), Expect(2) = 0.0
Identities = 126/479 (26%), Positives = 221/479 (46%), Gaps = 19/479 (3%)
Frame = +2
Query: 8 AFLYARNAKELWDDIAERFGGCNGPLLYQLKRDIANVTQGTLSITVYFTKLKRLWDELSC 187
+ L +A ++W D+ RF N P Y L ++I + QGTLS++ Y+T+LK LWD+L
Sbjct: 143 SILRMNDASDIWRDLNSRFNVTNLPRTYNLTQEIQDFRQGTLSLSEYYTRLKTLWDQLDS 202
Query: 188 LDPLP-PCTCETNKQLIDRDMKDKLIQFLMGLNDSHEHVRSQILIMDPLPNINKAYSMLL 364
+ L PCTC +L + + K+++FL GLN+S+ VR QI+ LP++ + Y +L
Sbjct: 203 TEALDEPCTCGKAMRLQQKAEQAKIVKFLAGLNESYAIVRRQIIAKKALPSLGEVYHILD 262
Query: 365 TVEKQRT--------AQLEVSELIENSAMMSKVQGPIRDTPNRMGNNSGPPHRNRGFHRM 520
Q++ A +VSE+ ++ +M P +GP
Sbjct: 263 QDNSQQSFSNVVAPPAAFQVSEITQSPSM----------DPTVCYVQNGP---------- 302
Query: 521 TKEEKAKLICEHCKGPGHDVNTCFKLHGIPDWFKKL-----KDQRGRQGVANLVDSTGAQ 685
K + IC GH C+K HG P F K Q+ + AN+ A+
Sbjct: 303 ---NKGRPICSFYNRVGHIAERCYKKHGFPPGFTPKGKAGEKLQKPKPLAANV-----AE 354
Query: 686 NNKLGASTEGNPHPDMSNMIQQEVAKYLAGRMMGGSNLPSES--NLSFAHFADFAGKHAP 859
++++ S E + N+ ++++ +++A N P + S + + +P
Sbjct: 355 SSEVNTSLESM----VGNLSKEQLQQFIAMFSSQLQNTPPSTYATASTSQSDNLGICFSP 410
Query: 860 IDVHF-GLSMLGN--LDNGSWILDMGDSRHMCSNPTLLSHITPISPHATICLPDGTTKSV 1030
F G+ + L + +W++D G + H+ + +L S + S + + LP G T +
Sbjct: 411 STYSFIGILTVARHTLSSATWVIDSGATHHVSHDRSLFSSLDT-SVLSAVNLPTGPTVKI 469
Query: 1031 THSGHIRLSPHLHLHDVFVVPSFKYNLLSVAQLTQQANLKCIFFPTHCVFQDLHSDKILG 1210
+ G ++L+ + L +V +P F+ NL+S++ LT + IF C QDL ++LG
Sbjct: 470 SGVGTLKLNDDILLKNVLFIPEFRLNLISISSLTDDIGSRVIFDKNSCEIQDLIKGRMLG 529
Query: 1211 TGKLHGRLYILQQTPVLSTPVSLAFNSDSSFPTQVLCNGSFELWHKKLGHASISLLNHI 1387
G+ LY+L D S + + +WH++LGHAS+ L+ I
Sbjct: 530 QGRRVANLYLLDV-------------GDQSISVNAVVD--ISMWHRRLGHASLQRLDAI 573
>gb|KYP37906.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1097
Score = 739 bits (1907), Expect = 0.0
Identities = 385/842 (45%), Positives = 521/842 (61%), Gaps = 19/842 (2%)
Frame = +1
Query: 1423 KNVAGCDVCHQSKQHRLPFSTSSIQTSDVFELLHIDVWGPYRAPSITNTPFLLNIVDDFS 1602
KN C+VC+ +KQ +LPFS S + ++F+LLH+D+WGP SI F L IVDD S
Sbjct: 274 KNKDPCNVCYLAKQRQLPFSHSVTKADEIFDLLHVDIWGPTTPASIFGHRFFLTIVDDKS 333
Query: 1603 RATWTFLMSHKSHTPKLLAQFLAMVHNHFQKSVKFIRTDNGTEFLSLECQTLFSAHGIIH 1782
R TW + M HKS L+ F+ ++ N F K VK +R+DNG EFL + + GI+H
Sbjct: 334 RHTWVYFMKHKSEVADHLSSFITLIENQFGKKVKCVRSDNGPEFL---LKNFYHEKGILH 390
Query: 1783 QKTCTYTPQQNGVVERKHRHLLDIARALMFQSNAPSHLWPYSILTATFLTNRLPVSVLHW 1962
Q +C TPQQNG+VERKH+H++ +ARAL+ QSN P W Y++ A FL NR P S L
Sbjct: 391 QTSCVETPQQNGIVERKHQHIMTVARALVMQSNLPKSFWFYAVSHAVFLINRQPSSFLEN 450
Query: 1963 KTPFEVLYSKTPDYSGLKPFGCLCYATNVFPHKDKFTTRAHKCIFLGYLPNQKGYRLFDL 2142
K P+E++Y+ PD +G+K FGCL YAT + ++ KF R +C+FLG+ P KG L+DL
Sbjct: 451 KIPYEIIYNALPDLAGIKVFGCLAYATTLHHNRKKFDPRGRRCVFLGFKPQVKGSILYDL 510
Query: 2143 TTEKVLISRDVIFVEDQFP-CPIQTPNLSDT--------PLPY------LSVLEDSSSSN 2277
+ + +SR V + E FP P +L+ T PLP LS +SS
Sbjct: 511 NSRETFLSRHVEYFEHIFPFLPTSPLDLTQTISLPRHQPPLPIDTDPTPLSTNTTPTSSP 570
Query: 2278 LEFIXXXXXXXXXXXXXXXXXXXXXVSHRPAYLNDFITNHVTDTAPCFHVASSVTSATHS 2457
+ + P+YL+D+ +H T H + +++ +S
Sbjct: 571 VSVVPPPPFVQKSTRPRKL----------PSYLHDY--HHTLLTT---HNSPTISQPLYS 615
Query: 2458 YH-HIS-PLFAPAYVSFLANVDSIQEPLSYSQARLDDNWVEAMSKELEALEFNGTWLLTE 2631
H HIS +P+ +F ++ SI+EP SY +A D++W A+ EL ALE N TW+LT
Sbjct: 616 IHNHISYSNLSPSQKAFSLSISSIKEPNSYVEAIQDESWKTAIQTELTALEKNNTWILTP 675
Query: 2632 LPPGKKAIGSKWVYKVKMNPDGTIDRYKARLVAKGYHQIHGVDYFDSFSPVAKLVTERFL 2811
LPP K+ +G KWV+K+K N DGTI+R+KARLVAKGY Q G+DY D+FSPV K+ T R L
Sbjct: 676 LPPNKQVVGCKWVFKLKFNSDGTIERHKARLVAKGYTQTEGLDYLDTFSPVVKMTTVRTL 735
Query: 2812 IAVATQHHWGLHQLDINNAFLHGTLNEEVYMRPPEGYLAA--KPGHVCLLKKSLYGLKQA 2985
+AVAT +W +HQLD+N FLHG L+EEVYM PP G + + VC L KSLYGLKQA
Sbjct: 736 LAVATAKNWHIHQLDVNTTFLHGDLHEEVYMTPPPGLTVSPHQSNCVCKLVKSLYGLKQA 795
Query: 2986 SREWNTAFCGSLIAYGFRQSSHDHCLFLKGDNTSFXXXXXXXXXXXXTGSNESDIAHLKH 3165
SR+WN LI GF+QS D+ LF K F G++ ++I ++K
Sbjct: 796 SRQWNAKLTSVLIDSGFKQSMADYSLFTKQFGAKFTAILVYVDDLVLAGNDPTEINYIKS 855
Query: 3166 YLDGLFTIKDLGYAKYFLGVEIARSEQGTYLCQRKYILDILRDTKMMDCKVASTPLPPGI 3345
LD FTIKDLG KYFLG+E+ARS G L QRKY LD++ DT ++ K +P+ +
Sbjct: 856 LLDQKFTIKDLGQLKYFLGMEVARSSTGIALYQRKYALDLIEDTGLLASKPCKSPMDHSV 915
Query: 3346 KLIHGAGTPLSNPEQFRRLIGRLLYLNFTRPDIAFATQQLSQFVGQPHTSHWEATLHVLR 3525
KL GTPL++P Q+RRL+GRL+YL TR DI+F+ LSQF+ QP H++A L +L+
Sbjct: 916 KLHKTVGTPLTDPTQYRRLLGRLIYLTNTRADISFSVNHLSQFMDQPTDVHYQAALRILK 975
Query: 3526 YLKGCPSVGLFYSVSATCSLTAYSDADWGTCPDTRKSLTGYCVFYGNCLISWKTKKQTTV 3705
Y+K P GLF+ S+ +L YSD+DW +C DTR+S+TG+ F G LISWK+KKQ TV
Sbjct: 976 YVKNAPGKGLFFPSSSDLTLKGYSDSDWASCSDTRRSVTGFSFFLGPALISWKSKKQATV 1035
Query: 3706 SRSSAEAEYRALGTTVCELQWLYYIAQDLQLSLPTPIDLWCDNQAAMHIVANPVFHERTK 3885
S+SSAEAEYRAL + CE QW+ Y+ D L PI L+CDNQ+A+HI +NPVFHERTK
Sbjct: 1036 SKSSAEAEYRALAQSTCEAQWISYLLHDFGLHNFHPIVLFCDNQSALHIASNPVFHERTK 1095
Query: 3886 HL 3891
H+
Sbjct: 1096 HI 1097
Score = 101 bits (251), Expect = 6e-18
Identities = 83/284 (29%), Positives = 124/284 (43%), Gaps = 13/284 (4%)
Frame = +2
Query: 548 CEHCKGPGHDVNTCFKLHGIPDWFK-----KLKDQRGRQGVANLVDSTG------AQNNK 694
C +C GH + TC+K HG P FK ++ +G L +S G N
Sbjct: 1 CTYCNKLGHTIETCYKKHGYPPHFKGGSAHNCYNEECDEGNPVLNESAGDISKGEKGENS 60
Query: 695 LGASTEGNPHPDMSNMIQQEVAKYLAGRMMGGSNLPSESNLSFAHFADFAGKHAPIDVHF 874
LG + E H + M+ Q+ + + A + LPS S D
Sbjct: 61 LGFTAE--QHKALLGMLTQQQSHHTANHITT-YELPSTS-----------------DPQS 100
Query: 875 GL--SMLGNLDNGSWILDMGDSRHMCSNPTLLSHITPISPHATICLPDGTTKSVTHSGHI 1048
G+ ++ N++N WILD G + H+C + L + I P I LPDG + G I
Sbjct: 101 GIVYTVSNNMNNNIWILDSGATDHICRSIKLFQCLRRIKP-VKIHLPDGKCVTTNLCGSI 159
Query: 1049 RLSPHLHLHDVFVVPSFKYNLLSVAQLTQQANLKCIFFPTHCVFQDLHSDKILGTGKLHG 1228
S L DV +P F +NL+SV++L +Q + F C QD S K++G K +
Sbjct: 160 FFSEDFFLADVLYIPEFNFNLVSVSRLIRQLGCRLTFSGDLCDIQDSQSMKMIGAAKHNM 219
Query: 1229 RLYILQQTPVLSTPVSLAFNSDSSFPTQVLCNGSFELWHKKLGH 1360
LY+L P V L +S ++F + +LWH +LGH
Sbjct: 220 GLYVLDWKP----KVCLYLHSINNFHSY-----DNDLWHIRLGH 254
>gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hopscotch polyprotein
(gb|U12626) [Arabidopsis thaliana]
Length = 1315
Score = 702 bits (1811), Expect(2) = 0.0
Identities = 378/889 (42%), Positives = 525/889 (59%), Gaps = 22/889 (2%)
Frame = +1
Query: 1438 CDVCHQSKQHRLPFSTSSIQTSDVFELLHIDVWGPYRAPSITNTPFLLNIVDDFSRATWT 1617
C VCH SKQ LPF + + ++S F+L+HID WGP+ + + L IVDD+SRATW
Sbjct: 439 CRVCHISKQKHLPFVSHNNKSSRPFDLIHIDTWGPFSVQTHDGYRYFLTIVDDYSRATWV 498
Query: 1618 FLMSHKSHTPKLLAQFLAMVHNHFQKSVKFIRTDNGTEFLSLECQTLFSAHGIIHQKTCT 1797
+L+ +KS ++ F+ MV N F+ ++K +R+DN E L + + GI+ +C
Sbjct: 499 YLLRNKSDVLTVIPTFVTMVENQFETTIKGVRSDNAPE---LNFTQFYHSKGIVPYHSCP 555
Query: 1798 YTPQQNGVVERKHRHLLDIARALMFQSNAPSHLWPYSILTATFLTNRLPVSVLHWKTPFE 1977
TPQQN VVERKH+H+L++AR+L FQS+ P W ILTA +L NRLP +L K PFE
Sbjct: 556 ETPQQNSVVERKHQHILNVARSLFFQSHIPISYWGDCILTAVYLINRLPAPILEDKCPFE 615
Query: 1978 VLYSKTPDYSGLKPFGCLCYATNVFPHKDKFTTRAHKCIFLGYLPNQKGYRLFDLTTEKV 2157
VL P Y +K FGCLCYA+ + KF+ RA C F+GY KGY+L DL T +
Sbjct: 616 VLTKTVPTYDHIKVFGCLCYASTSPKDRHKFSPRAKACAFIGYPSGFKGYKLLDLETHSI 675
Query: 2158 LISRDVIFVEDQFPCPIQT---------PNLSDTPLPYLS----VLEDSSSSNLEFIXXX 2298
++SR V+F E+ FP P+L+ TP V SSS++E +
Sbjct: 676 IVSRHVVFHEELFPFLGSDLSQEEQNFFPDLNPTPPMQRQSSDHVNPSDSSSSVEILPSA 735
Query: 2299 XXXXXXXXXXXXXXXXXXVSHR----PAYLNDFITNHVTDTAPCFHVASSVTSATHSYHH 2466
SHR PAYL D+ + V + P H S Y
Sbjct: 736 NPTNNVPEPSVQ------TSHRKAKKPAYLQDYYCHSVVSSTP--HEIRKFLS----YDR 783
Query: 2467 ISPLFAPAYVSFLANVDSIQEPLSYSQARLDDNWVEAMSKELEALEFNGTWLLTELPPGK 2646
I+ Y++FLA +D +EP +Y++A W +AM E + LE TW + LP K
Sbjct: 784 IND----PYLTFLACLDKTKEPSNYTEAEKLQVWRDAMGAEFDFLEGTHTWEVCSLPADK 839
Query: 2647 KAIGSKWVYKVKMNPDGTIDRYKARLVAKGYHQIHGVDYFDSFSPVAKLVTERFLIAVAT 2826
+ IG +W++K+K N DG+++RYKARLVA+GY Q G+DY ++FSPVAKL + + L+ VA
Sbjct: 840 RCIGCRWIFKIKYNSDGSVERYKARLVAQGYTQKEGIDYNETFSPVAKLNSVKLLLGVAA 899
Query: 2827 QHHWGLHQLDINNAFLHGTLNEEVYMRPPEGYLAAK-----PGHVCLLKKSLYGLKQASR 2991
+ L QLDI+NAFL+G L+EE+YMR P+GY + + P VC LKKSLYGLKQASR
Sbjct: 900 RFKLSLTQLDISNAFLNGDLDEEIYMRLPQGYASRQGDSLPPNAVCRLKKSLYGLKQASR 959
Query: 2992 EWNTAFCGSLIAYGFRQSSHDHCLFLKGDNTSFXXXXXXXXXXXXTGSNESDIAHLKHYL 3171
+W F +L+ GF QS DH FLK + F +N++ + LK +
Sbjct: 960 QWYLKFSSTLLGLGFIQSYCDHTCFLKISDGIFLCVLVYIDDIIIASNNDAAVDILKSQM 1019
Query: 3172 DGLFTIKDLGYAKYFLGVEIARSEQGTYLCQRKYILDILRDTKMMDCKVASTPLPPGIKL 3351
F ++DLG KYFLG+EI RS++G ++ QRKY LD+L +T + CK +S P+ P +
Sbjct: 1020 KSFFKLRDLGELKYFLGLEIVRSDKGIHISQRKYALDLLDETGQLGCKPSSIPMDPSMVF 1079
Query: 3352 IHGAGTPLSNPEQFRRLIGRLLYLNFTRPDIAFATQQLSQFVGQPHTSHWEATLHVLRYL 3531
H +G +RRLIGRL+YLN TRPDI FA +L+QF P +H +A +L+Y+
Sbjct: 1080 AHDSGGDFVEVGPYRRLIGRLMYLNITRPDITFAVNKLAQFSMAPRKAHLQAVYKILQYI 1139
Query: 3532 KGCPSVGLFYSVSATCSLTAYSDADWGTCPDTRKSLTGYCVFYGNCLISWKTKKQTTVSR 3711
KG GLFYS ++ L Y++AD+ +C D+R+S +GYC+F G+ LI WK++KQ VS+
Sbjct: 1140 KGTIGQGLFYSATSELQLKVYANADYNSCRDSRRSTSGYCMFLGDSLICWKSRKQDVVSK 1199
Query: 3712 SSAEAEYRALGTTVCELQWLYYIAQDLQLSLPTPIDLWCDNQAAMHIVANPVFHERTKHL 3891
SSAEAEYR+L EL WL ++LQ+ L P L+CDN+AA+HI N VFHERTKH+
Sbjct: 1200 SSAEAEYRSLSVATDELVWLTNFLKELQVPLSKPTLLFCDNEAAIHIANNHVFHERTKHI 1259
Query: 3892 DIDCHIVRNKFKDGFLLLKHVTSRHQLADIFTKALGCQAFQRILSKFGL 4038
+ DCH VR + G L H+ + Q+AD FTK L F R++SK GL
Sbjct: 1260 ESDCHSVRERLLKGLFELYHINTELQIADPFTKPLYPSHFHRLISKMGL 1308
Score = 165 bits (417), Expect(2) = 0.0
Identities = 131/465 (28%), Positives = 211/465 (45%)
Frame = +2
Query: 8 AFLYARNAKELWDDIAERFGGCNGPLLYQLKRDIANVTQGTLSITVYFTKLKRLWDELSC 187
+ LY A +W D+ RF + P LY+L++ I ++ QG L ++ Y T+ + LW+EL+
Sbjct: 53 SILYFPTAAAIWKDLYTRFHKSSLPRLYKLRQQIHSLRQGNLDLSSYHTRTQTLWEELTS 112
Query: 188 LDPLPPCTCETNKQLIDRDMKDKLIQFLMGLNDSHEHVRSQILIMDPLPNINKAYSMLLT 367
L +P T + L+ +++I FLMGLND ++ VRSQIL+ LP++++ ++M+
Sbjct: 113 LQAVP----RTVEDLLIERETNRVIDFLMGLNDCYDTVRSQILMKKTLPSLSEVFNMIDQ 168
Query: 368 VEKQRTAQLEVSELIENSAMMSKVQGPIRDTPNRMGNNSGPPHRNRGFHRMTKEEKAKLI 547
E QR+A++ + + +S P+ + ++ N T ++K + +
Sbjct: 169 DETQRSARISTTPGMTSSVF------PVSNQSSQSALNGD-----------TYQKKERPV 211
Query: 548 CEHCKGPGHDVNTCFKLHGIPDWFKKLKDQRGRQGVANLVDSTGAQNNKLGASTEGNPHP 727
C +C PGH +TC+K HG P FK + AN + N ST
Sbjct: 212 CSYCSRPGHVEDTCYKKHGYPTSFKSKQKFVKPSISANAAIGSEEVVNNTSVST-----G 266
Query: 728 DMSNMIQQEVAKYLAGRMMGGSNLPSESNLSFAHFADFAGKHAPIDVHFGLSMLGNLDNG 907
D++ Q++ +L+ ++ S P + +VH
Sbjct: 267 DLTTSQIQQLVSFLSSKLQPPST-PVQP-----------------EVH------------ 296
Query: 908 SWILDMGDSRHMCSNPTLLSHITPISPHATICLPDGTTKSVTHSGHIRLSPHLHLHDVFV 1087
S + S+P+ S + PI SG + L HL L+DV
Sbjct: 297 --------SISVSSDPSSSSTVCPI------------------SGSVHLGRHLILNDVLF 330
Query: 1088 VPSFKYNLLSVAQLTQQANLKCIFFPTHCVFQDLHSDKILGTGKLHGRLYILQQTPVLST 1267
+P FK+NLLSV+ LT+ + F T CV QD + ++G GK LYI+ LS
Sbjct: 331 IPQFKFNLLSVSSLTKSMGCRIWFDETSCVLQDATRELMVGMGKQVANLYIV-DLDSLSH 389
Query: 1268 PVSLAFNSDSSFPTQVLCNGSFELWHKKLGHASISLLNHIGFLKS 1402
P +DSS V S +LWHK+LGH S+ L + L S
Sbjct: 390 P-----GTDSSI--TVASVTSHDLWHKRLGHPSVQKLQPMSSLLS 427
>gb|KYP31387.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1002
Score = 721 bits (1862), Expect = 0.0
Identities = 372/848 (43%), Positives = 514/848 (60%), Gaps = 22/848 (2%)
Frame = +1
Query: 1429 VAGCDVCHQSKQHRLPFSTSSIQTSDVFELLHIDVWGPYRAPSITNTPFLLNIVDDFSRA 1608
V CD C +KQ +LP+STS+ +T+ FEL+H+D+WGP SI + L IVDD+SR
Sbjct: 190 VHACDACSFAKQKKLPYSTSTTRTTSFFELIHVDIWGPIAITSIEGYKYFLTIVDDYSRF 249
Query: 1609 TWTFLMSHKSHTPKLLAQFLAMVHNHFQKSVKFIRTDNGTEFLSLECQTLFSAHGIIHQK 1788
TW L+ +KS +L F+ + N F +K +R+DN EF F+A GI H+
Sbjct: 250 TWILLLKNKSDVKIILPNFIILTENQFSCKLKRLRSDNRKEFF---INDFFNAKGIFHET 306
Query: 1789 TCTYTPQQNGVVERKHRHLLDIARALMFQSNAPSHLWPYSILTATFLTNRLPVSVLHWKT 1968
+C TPQQNG+VERKH+HLL++ RAL+FQ+ P++ W +++ A ++ NRLP L+ K+
Sbjct: 307 SCVETPQQNGIVERKHQHLLNVCRALLFQAKVPNNFWSHALKLAVYIINRLPTPFLNHKS 366
Query: 1969 PFEVLYSKTPDYSGLKPFGCLCYATNVFPHKDKFTTRAHKCIFLGYLPNQKGYRLFDLTT 2148
P+E+++ P S LK FGCL YA+++ + K ++ KCIFLGY P KGY L+DL +
Sbjct: 367 PYELVHLIKPYLSNLKVFGCLSYASSLTSGRTKLAPKSLKCIFLGYKPGTKGYVLYDLHS 426
Query: 2149 EKVLISRDVIFVEDQFPCPIQTPNLSDTPL---------------PYLSV-------LED 2262
+ + SR+V+F E+ FP + S P+ P L + + D
Sbjct: 427 KSIFTSRNVVFHENIFPYHTSQSDTSQLPIDHTHSTTDIIHFDFPPTLPISPATTVAIND 486
Query: 2263 SSSSNLEFIXXXXXXXXXXXXXXXXXXXXXVSHRPAYLNDFITNHVTDTAPCFHVASSVT 2442
+SS+ + V +RP YL+ + + ++
Sbjct: 487 NSSNAVNDSIVSNDNQNTQIVIPPNRVSLRVKNRPRYLHQY------------YCGAAFA 534
Query: 2443 SATHSYHHISPLFAPAYVSFLANVDSIQEPLSYSQARLDDNWVEAMSKELEALEFNGTWL 2622
S +HS + LF LS SQ+ D W +AM+ EL AL+ N TW
Sbjct: 535 SQSHSTPYPMHLF-----------------LSSSQS---DCWQQAMASELIALDKNHTWT 574
Query: 2623 LTELPPGKKAIGSKWVYKVKMNPDGTIDRYKARLVAKGYHQIHGVDYFDSFSPVAKLVTE 2802
LT LPP KK +G +WVY++K DG+I+R+KARLVAKG+ Q GVDYF++FSPV KL T
Sbjct: 575 LTHLPPDKKLVGCRWVYRIKHKADGSIERFKARLVAKGFTQTEGVDYFETFSPVVKLTTV 634
Query: 2803 RFLIAVATQHHWGLHQLDINNAFLHGTLNEEVYMRPPEGYLAAKPGHVCLLKKSLYGLKQ 2982
R L+AVA+ ++W LHQLD++NAFLHG L+EEVYM+PP G P VC L+KSLYGLKQ
Sbjct: 635 RVLLAVASANNWFLHQLDVDNAFLHGDLHEEVYMKPPPGLSLPHPKLVCKLQKSLYGLKQ 694
Query: 2983 ASREWNTAFCGSLIAYGFRQSSHDHCLFLKGDNTSFXXXXXXXXXXXXTGSNESDIAHLK 3162
ASR WN L+ G++QS D+ LF+K + +G++ +I +K
Sbjct: 695 ASRNWNQKLTSELLFLGYKQSFADNSLFVKTQGSMITVLLVYVDDIVLSGNSLFEIQSVK 754
Query: 3163 HYLDGLFTIKDLGYAKYFLGVEIARSEQGTYLCQRKYILDILRDTKMMDCKVASTPLPPG 3342
++L F IKDLG KYFLG+E+ARS+ G L QRKY L++L ++ M+ CK +STP P
Sbjct: 755 NHLHAKFHIKDLGPLKYFLGLEVARSKTGLILNQRKYCLELLSESGMLGCKPSSTPADPC 814
Query: 3343 IKLIHGAGTPLSNPEQFRRLIGRLLYLNFTRPDIAFATQQLSQFVGQPHTSHWEATLHVL 3522
+KL GT +S+P FRRLIGRLLYL TRPDI FA QQLSQFV P H + + +L
Sbjct: 815 VKLHADQGTLISDPSPFRRLIGRLLYLTNTRPDIGFAVQQLSQFVSCPREPHMQQAMRIL 874
Query: 3523 RYLKGCPSVGLFYSVSATCSLTAYSDADWGTCPDTRKSLTGYCVFYGNCLISWKTKKQTT 3702
+YLK P GLFY + + A+SD DW TC TR+S+TGYCVF G L++WK+KKQ+T
Sbjct: 875 KYLKNAPGSGLFYPSNTPLKIQAFSDYDWATCATTRRSVTGYCVFLGKSLVTWKSKKQST 934
Query: 3703 VSRSSAEAEYRALGTTVCELQWLYYIAQDLQLSLPTPIDLWCDNQAAMHIVANPVFHERT 3882
V RS +EAEYRAL + CELQWL Y+ DLQ+S+P P +CD+Q+A+ I NP FHERT
Sbjct: 935 VFRSYSEAEYRALASLTCELQWLQYLFNDLQISVPVPYSTFCDSQSAIQIAKNPTFHERT 994
Query: 3883 KHLDIDCH 3906
KH+++DCH
Sbjct: 995 KHIEVDCH 1002
Score = 72.4 bits (176), Expect = 4e-09
Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 2/161 (1%)
Frame = +2
Query: 902 NGSWILDMGDSRHMCSNPTLLSHITPISPHATICLPDGTTKSVTHSGHIRLSPHLHLHDV 1081
+ +WILD G + H+ + + +TPISP +I LP+ + SG + L +L LH+
Sbjct: 17 SSTWILDSGATDHIFPFKSNFTTLTPISP-ISIQLPNQQFVTAKFSGTVVLG-NLILHNT 74
Query: 1082 FVVPSFKYNLLSVAQLTQQANLKCIFFPTHCVFQDLHSDKILGTGKLHGRLYILQQTPVL 1261
VP F L+S+ +L + IF HCV + + +++G K + L+ L L
Sbjct: 75 LFVPDFSVQLISIPKLINSNDCLVIFCKNHCVIVQITTFQMIGVAKKYQGLFHLLGNNNL 134
Query: 1262 STPVSLAFNSDSSFPTQVLCNGS--FELWHKKLGHASISLL 1378
+ S + SS L N + LWH KLGH S +L
Sbjct: 135 NVSDSSTLSYQSSLQHTALVNNTNICTLWHMKLGHPSNKIL 175