BLASTX nr result
ID: Rehmannia27_contig00032684
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia27_contig00032684
(3439 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_002608352.1| DNA-dependent RNA polymerase [Vitis vinifera... 187 8e-45
ref|YP_005090363.1| DNA-dependent RNA polymerase (mitochondrion)... 178 2e-42
gb|KUM50494.1| RNA polymerase (mitochondrion) [Picea glauca] 175 1e-41
gb|KVF21783.1| DNA-directed RNA polymerase, phage-type [Cynara c... 160 5e-39
gb|AAS15052.1| DNA-directed RNA polymerase [Daucus carota] 159 6e-36
ref|YP_005090412.1| orf2 gene product (mitochondrion) [Dorcocera... 154 1e-35
ref|NP_064020.1| orf348 gene product (mitochondrion) [Beta vulga... 139 2e-32
emb|CBL54114.1| hypothetical protein (mitochondrion) [Beta vulga... 139 2e-32
ref|NP_064084.1| orf217 gene product (mitochondrion) [Beta vulga... 135 2e-32
emb|CBX33250.1| hypothetical protein (mitochondrion) [Beta vulga... 135 2e-32
dbj|BAD66791.1| orf598 (mitochondrion) [Beta vulgaris subsp. vul... 142 2e-31
ref|NP_862328.1| hypothetical protein BrnaMpl_p6 [Brassica napus... 142 1e-30
emb|CAA71809.1| RNA polymerase (mitochondrion) [Beta vulgaris su... 141 2e-30
pir||S22768 130K protein - maize mitochondrial plasmid-like DNA S-2 138 2e-29
ref|YP_588349.1| hypothetical protein ZeamMp088 (mitochondrion) ... 138 2e-29
sp|P10581.1|RPOP_MAIZE RecName: Full=Probable DNA-directed RNA p... 137 2e-29
ref|XP_014628785.1| PREDICTED: probable DNA-directed RNA polymer... 135 8e-29
gb|AFI44277.1| RNA polymerase (mitochondrion) [Silene vulgaris] 120 8e-26
emb|CAQ52970.1| unnamed protein product (mitochondrion) [Lolium ... 121 4e-24
emb|CAQ52964.1| unnamed protein product (mitochondrion) [Lolium ... 120 6e-24
>ref|YP_002608352.1| DNA-dependent RNA polymerase [Vitis vinifera]
gi|209954148|emb|CAQ77581.1| DNA-dependent RNA
polymerase. This is a family of single chain RNA
polymerases; pfam00940 [Vitis vinifera]
gi|239764752|gb|ACS15222.1| DNA-dependent RNA polymerase
[Vitis vinifera]
Length = 975
Score = 187 bits (474), Expect = 8e-45
Identities = 113/280 (40%), Positives = 160/280 (57%)
Frame = -2
Query: 1020 VKQLFMPLIYGKTEYSMSKDIETNSNTLIDTKESRLTAKLFTKYFKKRFKGIVNLMELIR 841
VK LFMP+IYGKT S++ D + ++L+D E AK ++K + GIVNLM+LIR
Sbjct: 690 VKVLFMPMIYGKTVISIANDFNQHFDSLLDKGECMQLAKKIYIFYKTYYPGIVNLMDLIR 749
Query: 840 SVGWILSSSNNPVHYSIPLYRTIQDYMSSKIIQIWVYLRKTQGTKNKKMDNRTRCKVSLR 661
++ W++S+ + PV YS+ L+ T+QDYM SK + IWVY R +R R +V+LR
Sbjct: 750 NISWLVSAMDRPVLYSVSLFTTVQDYMKSKTVNIWVYDR----------IHRKRRQVTLR 799
Query: 660 HPTEKRDRRKSQISTFVNFIHQKDAGIAMSMVKQVINNMNAPIYTVHDNFITTLPYAHKL 481
P+ RDRRK+ +STF NFIHQKDA IAM M+K +++ NAP+YTVHDNFITT PYA +
Sbjct: 800 IPSGDRDRRKTHMSTFANFIHQKDAFIAMHMIKYMVSE-NAPVYTVHDNFITTAPYASYI 858
Query: 480 SKLYLDIFITSHNHGYDPLSVINHFLIENLYYSISPDQRPKVNQPIPIDELRKVLSSMRP 301
S+ Y+ + +N G PL IN F+ NL + PIP L L S+ P
Sbjct: 859 SRYYV---LVLYNMG-SPLLWINQFIDLNLAID---RNSYTLESPIPNHILLNSLESIIP 911
Query: 300 IRIRXXXXXXXXXXXKAELAEAETWNNKIDDIVTSYKYYL 181
+ ++ W KI + +Y+ Y+
Sbjct: 912 KNLNK--------------SKKLIWAKKIYSVCIAYEKYI 937
>ref|YP_005090363.1| DNA-dependent RNA polymerase (mitochondrion) [Phoenix dactylifera]
gi|343478415|gb|AEM43903.1| DNA-dependent RNA polymerase
(mitochondrion) [Phoenix dactylifera]
Length = 875
Score = 178 bits (452), Expect = 2e-42
Identities = 118/314 (37%), Positives = 166/314 (52%), Gaps = 30/314 (9%)
Frame = -2
Query: 1020 VKQLFMPLIYGKTEYSMSKDIETNSNTLIDTKESRLTAKLFTKYFKKRFKGIVNLMELIR 841
VK LFMPLIYGKT SM+KDI + +L+ K+S A L ++ ++ IVNL+ LI
Sbjct: 552 VKGLFMPLIYGKTVSSMAKDIMDHYGSLLSHKDSYGLAVLCYEFLSLKYPDIVNLLNLIN 611
Query: 840 SVGWILSSSNNPVHYSIPLYRTIQDYMSSKIIQIWVYLRKTQGTKNKKMDNRTRCKVSLR 661
+GW S + PV YSIP T+QDYM SK IW+Y R ++ R +V+LR
Sbjct: 612 LIGWFCSKLDKPVFYSIPYITTVQDYMRSKATDIWLYDRV----------SKKRRRVTLR 661
Query: 660 HPTEKRDRRKSQISTFVNFIHQKDAGIAMSMVKQVINNMNAPIYTVHDNFITTLPYAHKL 481
PT RD RK++++T VNFIHQKDA IAM +V++++ AP+YTVHDNFITT YA +
Sbjct: 662 VPTPDRDSRKTKVATCVNFIHQKDAYIAMKVVEELLLIQGAPVYTVHDNFITTALYARMV 721
Query: 480 SKLYLDIFITSHNHGYDPLSVINHFLIENL------YY---SISPDQR----------PK 358
++Y +F+ N G PL IN F+ NL +Y S SP+++ PK
Sbjct: 722 PEIYTGVFV---NMG-APLRFINQFINRNLILPDFPFYMDLSDSPEEKASARKIEERLPK 777
Query: 357 ---------VNQPIPIDELRKVLSSMRPIRIRXXXXXXXXXXXKAELAEAE--TWNNKID 211
V PIP +++R L + P +L++ E W+ I
Sbjct: 778 NPSNYVFHWVEDPIPGEDIRYFLDYLMP----------------KDLSKTERIKWDRNIS 821
Query: 210 DIVTSYKYYLENTC 169
V+ Y+ Y C
Sbjct: 822 ATVSCYEKYCNTVC 835
>gb|KUM50494.1| RNA polymerase (mitochondrion) [Picea glauca]
Length = 781
Score = 175 bits (444), Expect = 1e-41
Identities = 114/313 (36%), Positives = 165/313 (52%), Gaps = 14/313 (4%)
Frame = -2
Query: 1065 FRIPQM*DTSLN---CQQ-----VKQLFMPLIYGKTEYSMSKDIETNSNTLIDTKESRLT 910
F I +M + +L+ C Q VK +FMP+IYGKT S ++D++ + + I KES
Sbjct: 460 FMIAEMENKNLSTIVCNQLTRKLVKGIFMPMIYGKTLMSTARDLKDHLSHFITHKESFEV 519
Query: 909 AKLFTKYFKKRFKGIVNLMELIRSVGWILSSSNNPVHYSIPLYRTIQDYMSSKIIQIWVY 730
A + K+++ +F G+ L+ LIR +GWI S+ + PV Y +P + T+QDYM I IW Y
Sbjct: 520 ASVCFKFWRTQFPGMECLIRLIRHIGWIASARDRPVFYRVPYFTTVQDYMIMVPINIWFY 579
Query: 729 LRKTQGTKNKKMDNRTRCKVSLRHPTEKRDRRKSQISTFVNFIHQKDAGIAMSMVKQVIN 550
G K R +V+LR + KRDRRK+ ISTFVNFIHQ+DA IAM +V++++
Sbjct: 580 ----DGLHKK------RHRVTLRVSSSKRDRRKTDISTFVNFIHQRDAHIAMKVVERMLE 629
Query: 549 NMNAPIYTVHDNFITTLPYAHKLSKLYLDIFITSHNHGYDPLSVINHFLIENLYYSI--- 379
APIYTVHDNFITT Y H L ++Y+ + PLS++N F+ N+ I
Sbjct: 630 K-GAPIYTVHDNFITTAEYTHDLPRIYIKVICDMG----PPLSILNEFIYMNIIQPIVKV 684
Query: 378 ---SPDQRPKVNQPIPIDELRKVLSSMRPIRIRXXXXXXXXXXXKAELAEAETWNNKIDD 208
P + ++ I + L L + P I TW +I
Sbjct: 685 ESDGPHEGYFADKVISKEILHYYLKANVPENISKRM--------------MATWEERISG 730
Query: 207 IVTSYKYYLENTC 169
I+TSY+ Y C
Sbjct: 731 ILTSYENYTRYVC 743
>gb|KVF21783.1| DNA-directed RNA polymerase, phage-type [Cynara cardunculus var.
scolymus]
Length = 405
Score = 160 bits (405), Expect = 5e-39
Identities = 90/210 (42%), Positives = 131/210 (62%)
Frame = -2
Query: 1041 TSLNCQQVKQLFMPLIYGKTEYSMSKDIETNSNTLIDTKESRLTAKLFTKYFKKRFKGIV 862
+S+ + VK +FMP+IYGKT S + DI+ + + KE AK+ K++K ++ +
Sbjct: 210 SSITRKMVKGIFMPIIYGKTVMSTASDIKGYLSQYLTQKECFDLAKICFKFWKVKYHNMD 269
Query: 861 NLMELIRSVGWILSSSNNPVHYSIPLYRTIQDYMSSKIIQIWVYLRKTQGTKNKKMDNRT 682
L+ LIRS+GW+ SS PV YS+ Y TIQDYM + I IWVY + ++
Sbjct: 270 CLIRLIRSIGWVASSCGRPVQYSVDYYTTIQDYMQMESINIWVYDKL----------HKK 319
Query: 681 RCKVSLRHPTEKRDRRKSQISTFVNFIHQKDAGIAMSMVKQVINNMNAPIYTVHDNFITT 502
R KVSLR T+KRD +K+ +STFVNFIHQKDA IAM +V +V+ + AP+YTVHDNF+T
Sbjct: 320 RRKVSLRISTDKRDSKKTGVSTFVNFIHQKDAFIAMKVV-EVMLYLKAPVYTVHDNFLTL 378
Query: 501 LPYAHKLSKLYLDIFITSHNHGYDPLSVIN 412
Y+ K++ +Y ++ + PL +IN
Sbjct: 379 PYYSQKVADIYSNLVTRMGS----PLLIIN 404
>gb|AAS15052.1| DNA-directed RNA polymerase [Daucus carota]
Length = 999
Score = 159 bits (401), Expect = 6e-36
Identities = 107/287 (37%), Positives = 145/287 (50%), Gaps = 3/287 (1%)
Frame = -2
Query: 1020 VKQLFMPLIYGKTEYSMSKDIETNSNTLIDT-KESRLTAKLFTKYFKKRFKGIVNLMELI 844
VK +FMP+IYGKT MS I + D K A++F +FK ++ + LM +I
Sbjct: 703 VKGIFMPMIYGKT--LMSTGIFLQESFSFDLGKRQNAVAQVFYDFFKVKYSRLNCLMNMI 760
Query: 843 RSVGWILSSSNNPVHYSIPLYRTIQDYMSSKIIQIWVYLRKTQGTKNKKMDNRTRCKVSL 664
+++GW S NPV Y +PL+ TIQDY S IWVY + T K KV+L
Sbjct: 761 QNIGWFSSERGNPVCYKVPLFTTIQDYRKSSETHIWVYSKSTHSRK----------KVTL 810
Query: 663 RHPTEKRDRRKSQISTFVNFIHQKDAGIAMSMVKQVIN--NMNAPIYTVHDNFITTLPYA 490
P+E+RD RK+ STFVNFIHQKDA +AM++VK +++ ++ PIYTVHDNFIT
Sbjct: 811 SIPSEERDSRKTLSSTFVNFIHQKDACLAMNVVKFLLSDPSIPIPIYTVHDNFITIADCC 870
Query: 489 HKLSKLYLDIFITSHNHGYDPLSVINHFLIENLYYSISPDQRPKVNQPIPIDELRKVLSS 310
L LY I+++ PL IN F+ N D K + IP EL +L++
Sbjct: 871 FSLPLLY----ISAYKELGPPLLTINEFIYMNCSKPGYHDPE-KFKRVIPSRELESLLNN 925
Query: 309 MRPIRIRXXXXXXXXXXXKAELAEAETWNNKIDDIVTSYKYYLENTC 169
P R + WN K IV SY Y+ C
Sbjct: 926 CIPTEFRN---------------KKNLWNKKKTIIVNSYNTYVNAVC 957
>ref|YP_005090412.1| orf2 gene product (mitochondrion) [Dorcoceras hygrometricum]
gi|340549502|gb|AEK53323.1| hypothetical protein
(mitochondrion) [Dorcoceras hygrometricum]
Length = 585
Score = 154 bits (389), Expect = 1e-35
Identities = 99/281 (35%), Positives = 153/281 (54%), Gaps = 2/281 (0%)
Frame = -2
Query: 1017 KQLFMPLIYGKTEYSMSKDIETNSNTLIDTKESRLTAKLFTKYFKKRFKGIVNLMELIRS 838
K +FMP+IYGKT S + D++ + ++ I KE A + K++K ++ + L+ LIR
Sbjct: 299 KGIFMPMIYGKTLMSTACDLKRDLSSFITNKECFELASICFKFWKTKYSHMECLIRLIRH 358
Query: 837 VGWILSSSNNPVHYSIPLYRTIQDYMSSKIIQIWVYLRKTQGTKNKKMDNRTRCKVSLRH 658
+GWI+S+S+ V+Y+ T+Q+Y + I IW+Y KM N+ R +V+LR
Sbjct: 359 IGWIVSASDRIVNYNAKNLITVQNYTKIEPINIWIY---------DKM-NKKRRRVTLRV 408
Query: 657 PTEKRDRRKSQISTFVNFIHQKDAGIAMSMVKQVINNMN-APIYTVHDNFITTLPYAHKL 481
++K+D RK++ STFVNFIHQKDA IAM++V+ ++ N N PIYTVHDNFITT Y +L
Sbjct: 409 SSDKKDTRKTETSTFVNFIHQKDANIAMNVVESLMKNYNDCPIYTVHDNFITTAKYNKRL 468
Query: 480 SKLYLDIFITSHNHGYDPLSVINHFLIENLYY-SISPDQRPKVNQPIPIDELRKVLSSMR 304
S+ Y + N PL +IN F+ +N+ I + N+P S
Sbjct: 469 SEFYSYAIKSMGN----PLVIINSFIWKNVILPPILAGKAEVTNKP--------DWDSWV 516
Query: 303 PIRIRXXXXXXXXXXXKAELAEAETWNNKIDDIVTSYKYYL 181
R +TWN +I +++SY+ Y+
Sbjct: 517 FTREALFYYLIANIPDNLSYQMKKTWNERISGVISSYENYI 557
>ref|NP_064020.1| orf348 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris]
gi|9838498|ref|NP_064110.1| orf348 gene product
(mitochondrion) [Beta vulgaris subsp. vulgaris]
gi|323435080|ref|YP_004222298.1| hypothetical protein
BevumaM_p060 (mitochondrion) [Beta vulgaris subsp.
maritima] gi|323435134|ref|YP_004222352.1| hypothetical
protein BevumaM_p119 (mitochondrion) [Beta vulgaris
subsp. maritima] gi|346683171|ref|YP_004842103.1|
hypothetical protein BemaM_p056 (mitochondrion) [Beta
macrocarpa] gi|346683225|ref|YP_004842157.1| hypothetical
protein BemaM_p113 (mitochondrion) [Beta macrocarpa]
gi|9049321|dbj|BAA99331.1| orf348 (mitochondrion) [Beta
vulgaris subsp. vulgaris] gi|9087360|dbj|BAA99504.1|
orf348 (mitochondrion) [Beta vulgaris subsp. vulgaris]
gi|54606797|dbj|BAD66820.1| orf348 (mitochondrion) [Beta
vulgaris subsp. vulgaris] gi|317905585|emb|CBJ13997.1|
hypothetical protein (mitochondrion) [Beta vulgaris
subsp. maritima] gi|317905633|emb|CBJ14033.1|
hypothetical protein (mitochondrion) [Beta vulgaris
subsp. maritima] gi|319439813|emb|CBJ17524.1|
hypothetical protein (mitochondrion) [Beta vulgaris
subsp. maritima] gi|319439867|emb|CBJ17572.1|
hypothetical protein (mitochondrion) [Beta vulgaris
subsp. maritima] gi|320148019|emb|CBJ20685.1|
hypothetical protein (mitochondrion) [Beta vulgaris
subsp. maritima] gi|345500089|emb|CBX24905.1|
hypothetical protein (mitochondrion) [Beta macrocarpa]
gi|345500143|emb|CBX24962.1| hypothetical protein
(mitochondrion) [Beta macrocarpa]
Length = 348
Score = 139 bits (351), Expect = 2e-32
Identities = 87/213 (40%), Positives = 124/213 (58%), Gaps = 3/213 (1%)
Frame = -2
Query: 1020 VKQLFMPLIYGKTEYSMSKDIETNSNTLIDT--KESRLTAKLFTKYFKKRFKGIVNLMEL 847
VK +FMP+IYGKT+ S ++DI+ KES L A K++++ + + NL+ L
Sbjct: 44 VKSIFMPIIYGKTQMSTAEDIKMALKPYFYPAFKESFLLASPCFKFWREYYTEMENLIRL 103
Query: 846 IRSVGWILSSSNNPVHYSIPLYRTIQDYMSSKIIQIWVYLRKTQGTKNKKMDNRTRCKVS 667
IR VGW S+ + VHY P + T Q+YM IWVY + NR + KV+
Sbjct: 104 IRLVGWFASTCESSVHYVTPFFCTSQNYMVKDSHIIWVYDKV----------NRKKRKVT 153
Query: 666 LR-HPTEKRDRRKSQISTFVNFIHQKDAGIAMSMVKQVINNMNAPIYTVHDNFITTLPYA 490
LR +KRDR+K+++STFVNFIHQKDA IAM ++ + + +N PIYTVH+NFI+ +
Sbjct: 154 LRLSSRDKRDRKKTEVSTFVNFIHQKDALIAMGVISK-LYEVNEPIYTVHENFISNPLVS 212
Query: 489 HKLSKLYLDIFITSHNHGYDPLSVINHFLIENL 391
L +YL++ PL IN F+ ENL
Sbjct: 213 VHLPYIYLEVL----RELGPPLRFINSFIYENL 241
>emb|CBL54114.1| hypothetical protein (mitochondrion) [Beta vulgaris subsp. maritima]
Length = 348
Score = 139 bits (351), Expect = 2e-32
Identities = 87/213 (40%), Positives = 124/213 (58%), Gaps = 3/213 (1%)
Frame = -2
Query: 1020 VKQLFMPLIYGKTEYSMSKDIETNSNTLIDT--KESRLTAKLFTKYFKKRFKGIVNLMEL 847
VK +FMP+IYGKT+ S ++DI+ KES L A K++++ + + NL+ L
Sbjct: 44 VKSIFMPIIYGKTQMSTAEDIKMALKPYFYPAFKESFLLASPCFKFWREYYTEMENLIRL 103
Query: 846 IRSVGWILSSSNNPVHYSIPLYRTIQDYMSSKIIQIWVYLRKTQGTKNKKMDNRTRCKVS 667
IR VGW S+ + VHY P + T Q+YM IWVY + NR + KV+
Sbjct: 104 IRLVGWFASTCESSVHYVTPFFCTSQNYMVKDSHIIWVYDKV----------NRKKRKVT 153
Query: 666 LR-HPTEKRDRRKSQISTFVNFIHQKDAGIAMSMVKQVINNMNAPIYTVHDNFITTLPYA 490
LR +KRDR+K+++STFVNFIHQKDA IAM ++ + + +N PIYTVH+NFI+ +
Sbjct: 154 LRLSSRDKRDRKKTEVSTFVNFIHQKDALIAMGVISK-LYEVNEPIYTVHENFISNPLVS 212
Query: 489 HKLSKLYLDIFITSHNHGYDPLSVINHFLIENL 391
L +YL++ PL IN F+ ENL
Sbjct: 213 VHLPYIYLEVL----RELGPPLRFINSFIYENL 241
>ref|NP_064084.1| orf217 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris]
gi|323435106|ref|YP_004222324.1| hypothetical protein
BevumaM_p089 (mitochondrion) [Beta vulgaris subsp.
maritima] gi|346683198|ref|YP_004842130.1| hypothetical
protein BemaM_p085 (mitochondrion) [Beta macrocarpa]
gi|9087333|dbj|BAA99477.1| orf217 (mitochondrion) [Beta
vulgaris subsp. vulgaris] gi|317905660|emb|CBJ14056.1|
hypothetical protein (mitochondrion) [Beta vulgaris
subsp. maritima] gi|319439839|emb|CBJ17547.1|
hypothetical protein (mitochondrion) [Beta vulgaris
subsp. maritima] gi|345500116|emb|CBX24934.1|
hypothetical protein (mitochondrion) [Beta macrocarpa]
gi|384939138|emb|CBL51985.1| hypothetical protein
(mitochondrion) [Beta vulgaris subsp. maritima]
Length = 217
Score = 135 bits (340), Expect = 2e-32
Identities = 80/205 (39%), Positives = 121/205 (59%)
Frame = -2
Query: 1005 MPLIYGKTEYSMSKDIETNSNTLIDTKESRLTAKLFTKYFKKRFKGIVNLMELIRSVGWI 826
MP+IYGK++ S + D+ + ++ KE A L K++K++F + +L+ +IR +GW
Sbjct: 1 MPIIYGKSQMSTADDLRGHLRSITTKKECFHIASLCFKFWKEKFAHMDHLIGIIRLLGWF 60
Query: 825 LSSSNNPVHYSIPLYRTIQDYMSSKIIQIWVYLRKTQGTKNKKMDNRTRCKVSLRHPTEK 646
+S PV YS + T QDYM + +WVY K KK + VS + +K
Sbjct: 61 AASCGRPVLYSTKFFNTSQDYMVMEPYSLWVY------DKLKKRKRKVTLSVSSQ---DK 111
Query: 645 RDRRKSQISTFVNFIHQKDAGIAMSMVKQVINNMNAPIYTVHDNFITTLPYAHKLSKLYL 466
RDR+K++ISTFVNFIHQKDA IAMS+++ + + PIYTVHDN I T+ + L +Y
Sbjct: 112 RDRKKTEISTFVNFIHQKDAFIAMSVIEDMRKD-GYPIYTVHDNLICTITKSQDLPGIYR 170
Query: 465 DIFITSHNHGYDPLSVINHFLIENL 391
+F H+ G PL ++N+ + NL
Sbjct: 171 KVF---HDLG-APLKLVNNMIWMNL 191
>emb|CBX33250.1| hypothetical protein (mitochondrion) [Beta vulgaris subsp. maritima]
Length = 217
Score = 135 bits (340), Expect = 2e-32
Identities = 80/205 (39%), Positives = 121/205 (59%)
Frame = -2
Query: 1005 MPLIYGKTEYSMSKDIETNSNTLIDTKESRLTAKLFTKYFKKRFKGIVNLMELIRSVGWI 826
MP+IYGK++ S + D+ + ++ KE A L K++K++F + +L+ +IR +GW
Sbjct: 1 MPIIYGKSQMSTADDLRGHLRSITTKKECFHIASLCFKFWKEKFAHMDHLIGIIRLLGWF 60
Query: 825 LSSSNNPVHYSIPLYRTIQDYMSSKIIQIWVYLRKTQGTKNKKMDNRTRCKVSLRHPTEK 646
+S PV YS + T QDYM + +WVY K KK + VS + +K
Sbjct: 61 AASCGRPVLYSTKFFNTSQDYMVMEPYSLWVY------DKLKKRKRKVTLSVSSQ---DK 111
Query: 645 RDRRKSQISTFVNFIHQKDAGIAMSMVKQVINNMNAPIYTVHDNFITTLPYAHKLSKLYL 466
RDR+K++ISTFVNFIHQKDA IAMS+++ + + PIYTVHDN I T+ + L +Y
Sbjct: 112 RDRKKTEISTFVNFIHQKDAFIAMSVIEDMRKD-GYPIYTVHDNLICTITKSQDLPGIYR 170
Query: 465 DIFITSHNHGYDPLSVINHFLIENL 391
+F H+ G PL ++N+ + NL
Sbjct: 171 KVF---HDLG-APLKLVNNMIWMNL 191
>dbj|BAD66791.1| orf598 (mitochondrion) [Beta vulgaris subsp. vulgaris]
Length = 598
Score = 142 bits (357), Expect = 2e-31
Identities = 83/210 (39%), Positives = 125/210 (59%)
Frame = -2
Query: 1020 VKQLFMPLIYGKTEYSMSKDIETNSNTLIDTKESRLTAKLFTKYFKKRFKGIVNLMELIR 841
VK +FMP+IYGK++ S + D+ + ++ KE A L K++K++F + +L+ +IR
Sbjct: 377 VKSIFMPIIYGKSQMSTADDLRGHLRSITTKKECFHIASLCFKFWKEKFAHMDHLIGIIR 436
Query: 840 SVGWILSSSNNPVHYSIPLYRTIQDYMSSKIIQIWVYLRKTQGTKNKKMDNRTRCKVSLR 661
+GW +S PV YS + T QDYM + +WVY K KK + VS +
Sbjct: 437 LLGWFAASCGRPVLYSTKFFNTSQDYMVMEPYSLWVY------DKLKKRKRKVTLSVSSQ 490
Query: 660 HPTEKRDRRKSQISTFVNFIHQKDAGIAMSMVKQVINNMNAPIYTVHDNFITTLPYAHKL 481
+KRDR+K++ISTFVNFIHQKDA IAMS+++ + + PIYTVHDN I T+ + L
Sbjct: 491 ---DKRDRKKTEISTFVNFIHQKDAFIAMSVIEDMRKD-GYPIYTVHDNLICTITKSQDL 546
Query: 480 SKLYLDIFITSHNHGYDPLSVINHFLIENL 391
+Y +F H+ G PL ++N+ + NL
Sbjct: 547 PGIYRKVF---HDLG-APLKLVNNMIWMNL 572
>ref|NP_862328.1| hypothetical protein BrnaMpl_p6 [Brassica napus]
gi|23200585|dbj|BAC16369.1| orf6 [Brassica napus]
Length = 1078
Score = 142 bits (357), Expect = 1e-30
Identities = 93/231 (40%), Positives = 132/231 (57%), Gaps = 12/231 (5%)
Frame = -2
Query: 1041 TSLNCQQVKQLFMPLIYGKTEYSMSKDIETNSNTLIDTKESRLTAKLFTKYFKKRFKGIV 862
T ++ + VK+LFMPLIYGKT SM+ DI+ S + K A ++++ +F IV
Sbjct: 689 TQIDRKFVKRLFMPLIYGKTIMSMTNDIKLYSERKLPYKAYFKIANDCLEFWRMKFPDIV 748
Query: 861 NLMELIRSVGWILSSSNNPVHYSIPLYRTIQDYMSSKIIQIWVYLRKTQGTKNKKMDNRT 682
NLM+L+ VGW S N PV Y L+ T Q Y S QI +Y RKT +
Sbjct: 749 NLMKLLNLVGWFKSQMNKPVLYGHMLFTTHQFYTKSVKTQISIYDRKT----------KK 798
Query: 681 RCKVSLRHPTEKRDRRKSQISTFVNFIHQKDAGIAMSMVKQVIN-NMNAPIYTVHDNFIT 505
R +V+L+ PT +RD RKSQ+ST VNFIHQ+DA IAM +V ++ + +A +YTVHDNFIT
Sbjct: 799 RHRVTLKLPTPERDIRKSQVSTCVNFIHQRDACIAMLVVDKLNRYHEHASMYTVHDNFIT 858
Query: 504 TLPYAH-----------KLSKLYLDIFITSHNHGYDPLSVINHFLIENLYY 385
+ Y++ K+ LYL+ F + P +++ FL+ NL Y
Sbjct: 859 SPYYSNIIDISNQNYQFKIPSLYLEAF----KYIEKPSNIVMTFLMNNLIY 905
>emb|CAA71809.1| RNA polymerase (mitochondrion) [Beta vulgaris subsp. maritima]
Length = 1014
Score = 141 bits (355), Expect = 2e-30
Identities = 101/298 (33%), Positives = 142/298 (47%), Gaps = 14/298 (4%)
Frame = -2
Query: 1020 VKQLFMPLIYGKTEYSMSKDIETNSNTLIDTKESRLTAKLFTKYFKKRFKGIVNLMELIR 841
VK++FMP+IYGKT S +KD+ + + KE + L K++K R+ G+ + +ELIR
Sbjct: 723 VKKIFMPIIYGKTVNSTTKDLMISLGQDVLPKECVKLSTLCFKFWKDRYSGMNSFIELIR 782
Query: 840 SVGWILSSSNNPVHYSIPLYRTIQDYMSSKIIQIWVYLRKTQGTKNKKMDNRTRCKVSLR 661
VG + +S PV YS PL+ T QDY + + V+ K R R V+L
Sbjct: 783 LVGRVCASLERPVVYSTPLFNTSQDYKKMESCSVRVFDSK----------ERRRRSVTLS 832
Query: 660 HPTEKRDRRKSQISTFVNFIHQKDAGIAMSMVKQVINNMNAPIYTVHDNFITTLPYAHKL 481
P+ RD+ KS+ STFVNFIHQKDA IA+ V + N +N P+YTVHDNFI+ H +
Sbjct: 833 FPSNVRDKMKSRASTFVNFIHQKDAQIAIE-VASLANELNIPLYTVHDNFISNTELCHYM 891
Query: 480 SKLYLDIFITSHNHGYDPLSVINHFLIENL--------------YYSISPDQRPKVNQPI 343
Y F PL++IN F+ NL YY S K+ I
Sbjct: 892 PLFYRAAFKKME----APLTLINRFIYTNLIEPSLDNVDINKKYYYLRSGFYDHKI---I 944
Query: 342 PIDELRKVLSSMRPIRIRXXXXXXXXXXXKAELAEAETWNNKIDDIVTSYKYYLENTC 169
P L L S+ P+ +E W D + + YK Y++ C
Sbjct: 945 PTSLLNDFL-SITPL---------------SETKNKSGWKKITDQLKSQYKLYVKKVC 986
>pir||S22768 130K protein - maize mitochondrial plasmid-like DNA S-2
Length = 1159
Score = 138 bits (348), Expect = 2e-29
Identities = 88/242 (36%), Positives = 131/242 (54%), Gaps = 4/242 (1%)
Frame = -2
Query: 1020 VKQLFMPLIYGKTEYSMSKDIETNSNTLIDTKESRLTAKLFTKYFKKRFKGIVNLMELIR 841
VK++FMP++YGKT+Y++ KD+E D++ L +K + Y+K F + +LM+LI
Sbjct: 810 VKKMFMPMMYGKTDYTLKKDVEDLLKGKSDSEGINLISKHISTYWKVNFGKMKDLMDLIN 869
Query: 840 SVGWILSSSNNPVHYSIPLYRTIQDYMSSKIIQIWVYLRKTQGTKNKKMDNRTRCKVSLR 661
V W + + PV YS P + T+Q Y K +++ + T+ N+K T K+ +
Sbjct: 870 YVSWFGAGQDKPVVYSTPYWVTLQTYKRRKRVKMKIQYETTK--NNEKEVKTTSAKMLI- 926
Query: 660 HPTEKRDRRKSQISTFVNFIHQKDAGIAMSMV---KQVINNMNAPIYTVHDNFITTLPYA 490
P D RKS STF NFIHQKDA A+ +V ++ N + PIY VHDNFIT YA
Sbjct: 927 -PLNDNDIRKSSTSTFANFIHQKDAFTAIQLVDFINKLENASSIPIYAVHDNFITMPEYA 985
Query: 489 HKLSKLYLD-IFITSHNHGYDPLSVINHFLIENLYYSISPDQRPKVNQPIPIDELRKVLS 313
L LY D IF H PL +IN FL +++ ++ P+ ++E R +L
Sbjct: 986 SILPTLYRDSIFRMGH-----PLIIINKFLFDHILIPAIQNEHPQNKHLFSVEE-RSMLD 1039
Query: 312 SM 307
M
Sbjct: 1040 RM 1041
>ref|YP_588349.1| hypothetical protein ZeamMp088 (mitochondrion) [Zea mays subsp. mays]
gi|40794997|gb|AAR91041.1| hypothetical protein
(mitochondrion) [Zea mays]
Length = 1159
Score = 138 bits (347), Expect = 2e-29
Identities = 85/234 (36%), Positives = 129/234 (55%), Gaps = 4/234 (1%)
Frame = -2
Query: 1020 VKQLFMPLIYGKTEYSMSKDIETNSNTLIDTKESRLTAKLFTKYFKKRFKGIVNLMELIR 841
VK++FMP++YGKT+Y++ KD+E D++ L +K + Y+K+ F + +LM+LI
Sbjct: 810 VKKMFMPMMYGKTDYTLKKDVEDLLKGKSDSEGINLISKHISTYWKENFGKMKDLMDLIN 869
Query: 840 SVGWILSSSNNPVHYSIPLYRTIQDYMSSKIIQIWVYLRKTQGTKNKKMDNRTRCKVSLR 661
V W + + PV YS P + T+Q Y K +++ + T+ N+K T K+ +
Sbjct: 870 YVSWFGAGQDKPVVYSTPYWVTLQTYKRRKRVKMKIQYETTK--NNEKEVKTTSAKMLV- 926
Query: 660 HPTEKRDRRKSQISTFVNFIHQKDAGIAMSMVK---QVINNMNAPIYTVHDNFITTLPYA 490
P D RKS STF NFIHQKDA A+ +V+ ++ N + PIY VHDNFIT YA
Sbjct: 927 -PLNDNDIRKSSTSTFANFIHQKDAFTAIQLVEFINKLENASSIPIYAVHDNFITMPEYA 985
Query: 489 HKLSKLYLD-IFITSHNHGYDPLSVINHFLIENLYYSISPDQRPKVNQPIPIDE 331
L LY + IF H PL +IN FL +++ ++ PK ++E
Sbjct: 986 WILPTLYRESIFRMGH-----PLIIINKFLFDHILLPAIQNEHPKDKHFFSVEE 1034
>sp|P10581.1|RPOP_MAIZE RecName: Full=Probable DNA-directed RNA polymerase; AltName: Full=S-2
DNA ORF1
Length = 1098
Score = 137 bits (346), Expect = 2e-29
Identities = 88/242 (36%), Positives = 131/242 (54%), Gaps = 4/242 (1%)
Frame = -2
Query: 1020 VKQLFMPLIYGKTEYSMSKDIETNSNTLIDTKESRLTAKLFTKYFKKRFKGIVNLMELIR 841
VK++FMP++YGKT+Y++ KD+E D++ L +K + Y+K F + +LM+LI
Sbjct: 749 VKKMFMPMMYGKTDYTLKKDVEDLLKGKSDSEGINLISKHISTYWKVNFGKMKDLMDLIN 808
Query: 840 SVGWILSSSNNPVHYSIPLYRTIQDYMSSKIIQIWVYLRKTQGTKNKKMDNRTRCKVSLR 661
V W + + PV YS P + T+Q Y K +++ + T+ N+K T K+ +
Sbjct: 809 YVSWFGAGQDKPVVYSTPYWVTLQTYKWRKRVKMKIQYETTK--NNEKEVKTTSAKMLI- 865
Query: 660 HPTEKRDRRKSQISTFVNFIHQKDAGIAMSMV---KQVINNMNAPIYTVHDNFITTLPYA 490
P D RKS STF NFIHQKDA A+ +V ++ N + PIY VHDNFIT YA
Sbjct: 866 -PLNDNDIRKSSTSTFANFIHQKDAFTAIQLVDFINKLENASSIPIYAVHDNFITMPEYA 924
Query: 489 HKLSKLYLD-IFITSHNHGYDPLSVINHFLIENLYYSISPDQRPKVNQPIPIDELRKVLS 313
L LY D IF H PL +IN FL +++ ++ P+ ++E R +L
Sbjct: 925 SILPTLYRDSIFRMGH-----PLIIINKFLFDHILIPAIQNEHPQNKHLFSVEE-RSMLD 978
Query: 312 SM 307
M
Sbjct: 979 RM 980
>ref|XP_014628785.1| PREDICTED: probable DNA-directed RNA polymerase [Glycine max]
gi|947037606|gb|KRG88446.1| hypothetical protein
GLYMA_U040800 [Glycine max]
Length = 964
Score = 135 bits (341), Expect = 8e-29
Identities = 82/218 (37%), Positives = 126/218 (57%)
Frame = -2
Query: 1044 DTSLNCQQVKQLFMPLIYGKTEYSMSKDIETNSNTLIDTKESRLTAKLFTKYFKKRFKGI 865
D L VKQ++MP+IYGKT S +KD+ + + KE + + L K++++++ +
Sbjct: 697 DRVLTRSIVKQIYMPIIYGKTANSTTKDLIVSLCQDLLPKECTILSVLCFKFWQEKYSFM 756
Query: 864 VNLMELIRSVGWILSSSNNPVHYSIPLYRTIQDYMSSKIIQIWVYLRKTQGTKNKKMDNR 685
+ ++LI VG + S + PV YS + T QDY + + V+ + KK N
Sbjct: 757 YSFIQLISLVGRVCSYLDRPVLYSTEYFSTSQDYKKMEKHSVRVF-----NSYLKKAHN- 810
Query: 684 TRCKVSLRHPTEKRDRRKSQISTFVNFIHQKDAGIAMSMVKQVINNMNAPIYTVHDNFIT 505
V+L P+++RD+RKS +STF+NFIHQKDA IAMS + N+ N P+YTVHDNFIT
Sbjct: 811 ----VTLSFPSKERDKRKSGVSTFINFIHQKDAQIAMS-IAFYENSYNIPLYTVHDNFIT 865
Query: 504 TLPYAHKLSKLYLDIFITSHNHGYDPLSVINHFLIENL 391
+ Y +SK+YL + PL +IN F+ +N+
Sbjct: 866 NMHYCKYISKIYLHVI----KEMGPPLKIINRFIYKNI 899
>gb|AFI44277.1| RNA polymerase (mitochondrion) [Silene vulgaris]
Length = 371
Score = 120 bits (302), Expect = 8e-26
Identities = 88/287 (30%), Positives = 141/287 (49%), Gaps = 8/287 (2%)
Frame = -2
Query: 1020 VKQLFMPLIYGKTEYSMSKDIETNSNTLIDTKESRLTAKLFTKYFKKRFKGIVNLMELIR 841
VK +FMP+IYGKT S KD+ + E AKL ++ + + + ++LI
Sbjct: 82 VKNIFMPIIYGKTVNSTGKDLHILLGNDLLKPECFKLAKLCYAFWHDTYNHMYSFIDLIG 141
Query: 840 SVGWILSSSNNPVHYSIPLYRTIQDYMSSKIIQIWVYLRKTQGTKNKKMDNRTRCKVSLR 661
VG + +S PV ++ Y T QDY + + V+ + N+K NRT V+L
Sbjct: 142 LVGRVCASLERPVLFNTKFYDTHQDYKKVESCSVRVFDKI-----NRK--NRT---VNLS 191
Query: 660 HPTEKRDRRKSQISTFVNFIHQKDAGIAMSMVKQVINNMNAPIYTVHDNFITTLPYAHKL 481
P++ RD+RKS+ +TFVNFIHQ+DA IAMS V ++ + P+YTVHDNFI+ + KL
Sbjct: 192 VPSDVRDKRKSRAATFVNFIHQRDAKIAMS-VAEIAGSYQIPLYTVHDNFISNTINSQKL 250
Query: 480 SKLYLDIFITSHNHGYDPLSVINHFLIENLY---YSISPDQRPK-----VNQPIPIDELR 325
+Y +F P+++IN F+ NL ++ Q + +N I +L
Sbjct: 251 PNIYCHVF----REMEAPMTIINRFIYNNLIKPSLDLNDSQNKEYMEHLLNHRIDRQDLE 306
Query: 324 KVLSSMRPIRIRXXXXXXXXXXXKAELAEAETWNNKIDDIVTSYKYY 184
+L P+ +E+ + W+ I +++ Y Y
Sbjct: 307 SILKKDIPM---------------SEMKNKKGWDKIIKNLLDQYDLY 338
>emb|CAQ52970.1| unnamed protein product (mitochondrion) [Lolium perenne]
Length = 1272
Score = 121 bits (303), Expect = 4e-24
Identities = 75/216 (34%), Positives = 122/216 (56%), Gaps = 6/216 (2%)
Frame = -2
Query: 1020 VKQLFMPLIYGKTEYSMSKDIETNSNTLIDTKESRLTAKLFTKYFKKRFKGIVNLMELIR 841
+K ++MP+IYGKT+ S D D ++ +++ +K + NLMELI+
Sbjct: 898 MKNIYMPIIYGKTKKSTRDDFIKKIGHNRDYATINKLVEICFQFWDHYYKDVNNLMELIQ 957
Query: 840 SVGWILSSSNNPVHYSIPLYRTIQDYMSSKIIQIWVYLRKTQGTKNKKMDNRTRCKVSLR 661
SV I + ++ + Y L++TIQ+Y +K I V T+ R R V+++
Sbjct: 958 SVCMITTKLDSNIIYGNNLFKTIQNYCKTKEQIISVIYDSTR---------RKRSGVTVK 1008
Query: 660 HPTEKRDRRKSQISTFVNFIHQKDAGIAMSMVKQVINNMN------APIYTVHDNFITTL 499
T+ +D RK+ ISTF NFIHQ+DA + +++++++I+ N PIYTVHDNFITT+
Sbjct: 1009 ENTDIKDPRKTVISTFANFIHQRDAVMVLNVIREIISVENKSLKEYIPIYTVHDNFITTI 1068
Query: 498 PYAHKLSKLYLDIFITSHNHGYDPLSVINHFLIENL 391
+A K+ + Y + F S H PL +IN F+ +N+
Sbjct: 1069 EHASKIPQFYRNAFY-SFGH---PLLIINKFIYDNI 1100
>emb|CAQ52964.1| unnamed protein product (mitochondrion) [Lolium perenne]
Length = 1284
Score = 120 bits (301), Expect = 6e-24
Identities = 74/216 (34%), Positives = 123/216 (56%), Gaps = 6/216 (2%)
Frame = -2
Query: 1020 VKQLFMPLIYGKTEYSMSKDIETNSNTLIDTKESRLTAKLFTKYFKKRFKGIVNLMELIR 841
+K ++MP+IYGKT+ S D D ++ +++ +K + NLMELI+
Sbjct: 910 MKNIYMPIIYGKTKNSTRDDFIKKIGHNRDYATINKLVEICFQFWDHYYKDVNNLMELIQ 969
Query: 840 SVGWILSSSNNPVHYSIPLYRTIQDYMSSKIIQIWVYLRKTQGTKNKKMDNRTRCKVSLR 661
SV I + ++ + Y L++TIQ+Y +K I V T+ R R V+++
Sbjct: 970 SVCMITTKLDSNIIYGNNLFKTIQNYCKTKEQIISVIYDSTR---------RKRSGVTVK 1020
Query: 660 HPTEKRDRRKSQISTFVNFIHQKDAGIAMSMVKQVINNMN------APIYTVHDNFITTL 499
T+ +D RK+ ISTF NFIHQ+DA + +++++++I+ N PIYTVHDNFITT+
Sbjct: 1021 ENTDIKDPRKTVISTFANFIHQRDAVMVLNVIREIISVENQSLKEYIPIYTVHDNFITTI 1080
Query: 498 PYAHKLSKLYLDIFITSHNHGYDPLSVINHFLIENL 391
+A+K+ + Y + + S H PL +IN F+ +N+
Sbjct: 1081 EHAYKIPQFYRNA-LYSFGH---PLLIINKFIYDNI 1112