BLASTX nr result
ID: Rehmannia27_contig00032030
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia27_contig00032030
(1307 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_010542100.1| PREDICTED: uncharacterized protein LOC104815... 184 5e-63
ref|XP_012833844.1| PREDICTED: uncharacterized protein LOC105954... 154 4e-61
ref|XP_008779879.1| PREDICTED: uncharacterized protein LOC103699... 154 1e-60
ref|XP_012856897.1| PREDICTED: uncharacterized protein LOC105976... 152 5e-60
emb|CAA72989.1| unnamed protein product [Brassica oleracea var. ... 199 2e-59
ref|XP_013617588.1| PREDICTED: uncharacterized protein LOC106324... 191 3e-59
ref|XP_013713394.1| PREDICTED: uncharacterized protein LOC106417... 191 1e-58
emb|CAN83990.1| hypothetical protein VITISV_018454 [Vitis vinifera] 209 7e-56
gb|AJY78067.1| putative polyprotein [Glycine max] 160 3e-53
gb|KYP61050.1| Retrovirus-related Pol polyprotein from transposo... 138 3e-53
emb|CAN76546.1| hypothetical protein VITISV_010420 [Vitis vinifera] 200 1e-52
emb|CAN81016.1| hypothetical protein VITISV_025518 [Vitis vinifera] 144 1e-51
gb|KYP68426.1| Retrovirus-related Pol polyprotein from transposo... 159 2e-51
gb|KYP66809.1| Retrovirus-related Pol polyprotein from transposo... 154 3e-51
gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsi... 196 3e-51
gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsi... 192 9e-51
ref|XP_009128559.1| PREDICTED: uncharacterized protein LOC103853... 187 9e-51
ref|XP_010526678.1| PREDICTED: retrovirus-related Pol polyprotei... 190 2e-50
ref|XP_010526681.1| PREDICTED: retrovirus-related Pol polyprotei... 190 2e-50
emb|CAN65820.1| hypothetical protein VITISV_042324 [Vitis vinifera] 145 3e-50
>ref|XP_010542100.1| PREDICTED: uncharacterized protein LOC104815417 [Tarenaya
hassleriana] gi|729394752|ref|XP_010552828.1| PREDICTED:
uncharacterized protein LOC104823102 [Tarenaya
hassleriana]
Length = 614
Score = 184 bits (466), Expect(3) = 5e-63
Identities = 115/300 (38%), Positives = 164/300 (54%), Gaps = 6/300 (2%)
Frame = -1
Query: 884 QNSGVIGTDNSQRVVTGGSQNTLVDKLTNNQCQQLIALLSSQLHTNSTS--EVGQPTASV 711
QN G I ++ V+ +Q + V L+ Q QL L + L+ +S S E G P
Sbjct: 270 QNKGTIANVITEPVMDQ-NQVSDVGALSTQQLHQLFYKLGAALNISSPSITENGAPENVT 328
Query: 710 SSFSGIDTKSFCLSAVASHPISKSSWIIDTGATHHVCCTLSLFQSYHPISTAHISLPTGH 531
SS + + S +SA + +WIID+GAT HVC SL IS ISLP G
Sbjct: 329 SSGNHLILSS--VSADIHMKDTNDTWIIDSGATTHVCAHSSLMHDIRTISPVSISLPNGS 386
Query: 530 SLNVHHIGTIIFPSGLTLHHVLFVPDFHFNILSVSSLTAHQSYSINFLAHSCFIQDPSVG 351
L V G + + L +VL VP F FNIL+VS+L +H +++++F SC +Q G
Sbjct: 387 RLTVTQAGKAMINQHIVLQNVLLVPSFSFNILNVSALLSHNNFNLSFTPTSCILQASIPG 446
Query: 350 KKIGMGRRIGNLYVLDE---TVTPQSHLSPHISCNSIG-GHILWHSRLGHPSTPRLHALK 183
KIG LY+L+ T TPQ+ + CN++ +WH RLGHPS ++ L
Sbjct: 447 LKIGKADLHCGLYLLNSDSFTPTPQTQM-----CNALRVDFTVWHRRLGHPSIQKIKNLS 501
Query: 182 TVLNLNKIVDDTHCVVCPLAKQRRLAYTTSDSQS*QIFDLIHCDIWGPFSPCTTKGHKYF 3
++LNL+KI + THC C LAKQR L + +++ + IFDL+H +IWGPFS + G+KYF
Sbjct: 502 SILNLSKITEPTHCNTCHLAKQRHLPFVSNNHVASSIFDLLHINIWGPFSVVSIDGYKYF 561
Score = 66.6 bits (161), Expect(3) = 5e-63
Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 4/104 (3%)
Frame = -2
Query: 1300 CNCGGLKAWNDYHQFEYTLQFLMGLNDSYSQIRAQILLMDPMPPISKVFSLVVQKERQRM 1121
C+CG K W D + ++ QFL GLND + +R I+LMDP+P ++K +VV+ E+Q+M
Sbjct: 122 CSCGVDKKWRDLFEEDFVFQFLCGLNDVFEPVRDHIILMDPLPNLAKASGIVVKHEQQKM 181
Query: 1120 IHRGI----SVCSDGKNSNDTVDSVSAAIKMNNGRKERDKPFCT 1001
I I SV T + + A K R +P CT
Sbjct: 182 IKNPILTDTSVFQTPVQPQHTENVAAVA---GGFYKPRQRPLCT 222
Score = 41.6 bits (96), Expect(3) = 5e-63
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = -3
Query: 1011 LFAHCQRDNHTIETCYKLHGFPPGY 937
L HC HT+ CYKLHG+PPGY
Sbjct: 220 LCTHCGLYGHTVHKCYKLHGYPPGY 244
>ref|XP_012833844.1| PREDICTED: uncharacterized protein LOC105954710 [Erythranthe guttata]
Length = 659
Score = 154 bits (390), Expect(3) = 4e-61
Identities = 108/317 (34%), Positives = 162/317 (51%), Gaps = 22/317 (6%)
Frame = -1
Query: 887 NQNSGV---IGTDNSQRVVTGGSQNTLVDKLTNNQCQQLIALLSSQL---HTNSTSEV-- 732
NQ SG + + +S V+ + + +T +QCQQ +++ SS + ST+ +
Sbjct: 302 NQVSGFDSSLDSHSSDAGVSSQQVDGYLQSMTPSQCQQFMSMFSSHMAAQQQQSTASIQP 361
Query: 731 ----GQPTASVSSFSGIDTKSFCLSAVASHPISKSSWIIDTGATHHVCCTLSLFQSYHPI 564
G TA+VS +GI LS V S +S + WI+D+GA+ H+C LF + P+
Sbjct: 362 QSAHGADTATVSCVTGI----CALSGVPS--LSSADWILDSGASKHICHDKQLFINIRPV 415
Query: 563 STAHISLPTGHSLNVHHIGTIIFPSGLTLHHVLFVPDFHFNILSVSSLTAHQSYSINFLA 384
S + LP L V +G + + L V +VP F FN++SVS+ + + I F A
Sbjct: 416 SNFRVLLPDSSVLIVSFVGDVRLSKEIFLTGVFYVPQFKFNLISVSAFLQNNQFFIGFSA 475
Query: 383 HSCFIQDPSVGKKIGMGRRIGNLYVLDETVTPQSHLSPHIS-------CNSIGGHILWHS 225
+ IQD K IG GR++ L VLD +P P IS CN + + H
Sbjct: 476 FTFVIQD-KFFKMIGRGRKVEELNVLD---SPPFLPPPSISSCNSVFVCNQVSATVS-HK 530
Query: 224 RLGHPSTPRLHALKTVLNLNK---IVDDTHCVVCPLAKQRRLAYTTSDSQS*QIFDLIHC 54
RLGH +L LK L ++ D+ C VCP+AKQ+RL++ + + + +FDLIHC
Sbjct: 531 RLGHVPFKKLVFLKAFLPVSSGFAPPKDSCCHVCPVAKQKRLSFPSHNHVADHVFDLIHC 590
Query: 53 DIWGPFSPCTTKGHKYF 3
DIWGP+ + G KYF
Sbjct: 591 DIWGPYKVPSYNGFKYF 607
Score = 86.7 bits (213), Expect(3) = 4e-61
Identities = 46/105 (43%), Positives = 64/105 (60%), Gaps = 5/105 (4%)
Frame = -2
Query: 1300 CNCGGLKAWNDYHQFEYTLQFLMGLNDSYSQIRAQILLMDPMPPISKVFSLVVQKERQRM 1121
C+CGG + ++ EY + FLMGLNDS + R QILLMDP+PPISKVF+ + Q+ERQR
Sbjct: 167 CDCGGFEKLQAHYNQEYVMSFLMGLNDSLASTRGQILLMDPLPPISKVFAFISQEERQRS 226
Query: 1120 IHRGISVCSDGKNSNDTVDSVSAAIKMNN-----GRKERDKPFCT 1001
+ +S D S +V + +NN G K+R++ FCT
Sbjct: 227 V---VSSHVDSSGSVFSVKNEGFKRSINNQFYNPGLKKRERSFCT 268
Score = 44.7 bits (104), Expect(3) = 4e-61
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -3
Query: 1026 RKEINLFAHCQRDNHTIETCYKLHGFPPGY 937
++E + HC HT+E CYKLHG+PP Y
Sbjct: 261 KRERSFCTHCNMQGHTVEKCYKLHGYPPSY 290
>ref|XP_008779879.1| PREDICTED: uncharacterized protein LOC103699645, partial [Phoenix
dactylifera]
Length = 521
Score = 154 bits (388), Expect(3) = 1e-60
Identities = 101/290 (34%), Positives = 145/290 (50%), Gaps = 26/290 (8%)
Frame = -1
Query: 806 LTNNQCQQLIALL-----SSQLHT-NSTSEVGQP---TASVSSFSGIDTKSFCLSAVASH 654
LT Q QQL+ LL S+ H+ N + P T +VS SGI S C S
Sbjct: 234 LTKGQYQQLLTLLQHKDSSTAPHSANQIQSIVTPASLTPNVSKMSGI---SICFSTYTHK 290
Query: 653 PIS--KSSWIIDTGATHHVCCTLSLFQSYHPISTAHISLPTGHSLNVHHIGTIIFPSGLT 480
P + ++ WIIDTGAT H+ C LF + I + + LP G + V HIGT+ S +
Sbjct: 291 PSTPHETPWIIDTGATDHMICDTELFSTVTAIVSYSVKLPNGIEVPVTHIGTVKVTSTII 350
Query: 479 LHHVLFVPDFHFNILSVSSLTAHQSYSINFLAHSCFIQDPSVGKKIGMGRRIGNLY---- 312
L VL VP F FN+LS + + + F ++ CF+QD S IGMG LY
Sbjct: 351 LKDVLCVPSFSFNLLSAKKIAESLNCCLIFFSNRCFLQDLSSWTTIGMGEVRNGLYHLLR 410
Query: 311 ------VLDETVTPQSHLSPHISCNSIGGHI---LWHSRLGHPSTPRLHALKTVLNLNKI 159
+L T++ SH +S + + LWH RLGH S RL + + +K+
Sbjct: 411 MEVASSILVTTLSKLSHKDFSVSASIMNDRSVSDLWHCRLGHISVSRLRLIDDPIVKDKM 470
Query: 158 --VDDTHCVVCPLAKQRRLAYTTSDSQS*QIFDLIHCDIWGPFSPCTTKG 15
+++ C +CP+AKQ R+ + S +S +F+++HCDIWGP S G
Sbjct: 471 SSINELPCCICPMAKQHRIPFPVSQHRSSILFEIVHCDIWGPCSVAAYDG 520
Score = 87.4 bits (215), Expect(3) = 1e-60
Identities = 46/112 (41%), Positives = 68/112 (60%), Gaps = 10/112 (8%)
Frame = -2
Query: 1306 PICNCGGLKAWNDYHQFEYTLQFLMGLNDSYSQIRAQILLMDPMPPISKVFSLVVQKERQ 1127
P C+CG LK D +Q + +QFLMGLNDS++ +R QI+L+DP+PP++KVFSL+ Q+ERQ
Sbjct: 53 PECSCGKLKILLDRYQRDCVIQFLMGLNDSFTNVRDQIMLLDPLPPVNKVFSLIQQQERQ 112
Query: 1126 RMIHRGISVCSDGKNSNDTVDSVSAAIKMNNGR----------KERDKPFCT 1001
+ I + DS++ A + NG ++RD+PFCT
Sbjct: 113 HQMTSNI----------PSPDSMALATRKFNGNAKPISKFTTTQKRDRPFCT 154
Score = 43.1 bits (100), Expect(3) = 1e-60
Identities = 15/30 (50%), Positives = 22/30 (73%), Gaps = 3/30 (10%)
Frame = -3
Query: 1002 HCQRDNHTIETCYKLHGFPPG---YNKGRN 922
HC+ H +E CYK+HG+PPG +NKG++
Sbjct: 179 HCKMTGHVVEKCYKIHGYPPGHKFFNKGKS 208
>ref|XP_012856897.1| PREDICTED: uncharacterized protein LOC105976150 [Erythranthe guttata]
Length = 746
Score = 152 bits (383), Expect(3) = 5e-60
Identities = 96/284 (33%), Positives = 146/284 (51%), Gaps = 8/284 (2%)
Frame = -1
Query: 830 SQNTLVDKLTNNQCQQLIALLSSQLHTNSTSEVGQP------TASVSSFSGIDTKSFCLS 669
S + ++ ++ QCQQL+A S+Q+ Q A +S SGI CL+
Sbjct: 331 SSDPVLANMSAAQCQQLMAYFSNQMAAKKQVSTQQSHGDEAEVAHISCVSGI-----CLA 385
Query: 668 AVASHPISKSSWIIDTGATHHVCCTLSLFQSYHPISTAHISLPTGHSLNVHHIGTIIFPS 489
A WIID+GA+ H+C +LF S H ++ A + LP + V ++G +
Sbjct: 386 ASLHESFQPHYWIIDSGASRHICNDKTLFSSLHKVNFARVILPDCSLVVVEYMGDVCLSD 445
Query: 488 GLTLHHVLFVPDFHFNILSVSSLTAHQSYSINFLAHSCFIQDPSVGKKIGMGRRIGNLYV 309
L L +V +VP F FN++SVS+L +++ F + S IQD + KKIG G +I
Sbjct: 446 DLILKNVFYVPSFKFNLISVSALLDRLPHTVIFDSTSFLIQDKFL-KKIGKGSKI----- 499
Query: 308 LDETVTPQSHLSPHISCNSIGGHILWHSRLGHPSTPRLHALKTVLNL--NKIVDDTHCVV 135
D + T +WH+RLGH +L L T +L +K +++ C +
Sbjct: 500 -DVSAT------------------VWHNRLGHIPQLKLDILSTKFSLAMDKPKNNSCCYI 540
Query: 134 CPLAKQRRLAYTTSDSQS*QIFDLIHCDIWGPFSPCTTKGHKYF 3
CP+AKQ+RL + S + S +FDLIHCDIWGP+ + G+KYF
Sbjct: 541 CPMAKQKRLKFPISSTVSSHMFDLIHCDIWGPYRVESHNGYKYF 584
Score = 84.0 bits (206), Expect(3) = 5e-60
Identities = 43/113 (38%), Positives = 67/113 (59%), Gaps = 13/113 (11%)
Frame = -2
Query: 1300 CNCGGLKAWNDYHQFEYTLQFLMGLNDSYSQIRAQILLMDPMPPISKVFSLVVQKERQRM 1121
C CGG++ N+++ E+ + FLMGLN+S + R QILLMDP+PPI+KVF+LV Q+ERQR
Sbjct: 165 CTCGGVQKLNEHYNLEHVMAFLMGLNESLTSTRGQILLMDPLPPINKVFALVSQEERQRS 224
Query: 1120 IHRGISVCSDGKNSNDTVDSVSAAIK-------------MNNGRKERDKPFCT 1001
IH + N+ +S++ +I+ + K +++ FCT
Sbjct: 225 IH---------SSHNEVQNSLAFSIRGDQSVQRSVHNQVYTSAPKRKERGFCT 268
Score = 46.2 bits (108), Expect(3) = 5e-60
Identities = 18/30 (60%), Positives = 20/30 (66%)
Frame = -3
Query: 1026 RKEINLFAHCQRDNHTIETCYKLHGFPPGY 937
RKE HC HTI+ CYKLHG+PPGY
Sbjct: 261 RKERGFCTHCNIYGHTIDKCYKLHGYPPGY 290
>emb|CAA72989.1| unnamed protein product [Brassica oleracea var. viridis]
Length = 1131
Score = 199 bits (506), Expect(3) = 2e-59
Identities = 115/282 (40%), Positives = 161/282 (57%), Gaps = 10/282 (3%)
Frame = -1
Query: 818 LVDKLTNNQCQQLIALLSSQLH-----TNSTSEVGQPTASVS-SFSGIDTKSFCLSAVAS 657
LV + Q QQ IAL SSQL +N S QP + SF+ L V+
Sbjct: 324 LVGNHSKEQLQQFIALFSSQLPNVTMGSNEASSSKQPMDNSGISFNPTTLVFIGLLTVSR 383
Query: 656 HPISKSSWIIDTGATHHVCCTLSLFQSYHPISTAHISLPTGHSLNVHHIGTIIFPSGLTL 477
H ++ +WIID+GATHHVC S++ S +T++++LP G + + +G + +TL
Sbjct: 384 HTLANETWIIDSGATHHVCHDRSMYTSIDITTTSNVNLPNGMIVKISGVGIVQLNEHITL 443
Query: 476 HHVLFVPDFHFNILSVSSLTAHQSYSINFLAHSCFIQDPSVGKKIGMGRRIGNLYVLDET 297
H+VL++P+F N+LS+SSLT+ + F SC IQDP+ G IG GRR+ NLYVLD
Sbjct: 444 HNVLYIPEFRLNLLSISSLTSDIGSQVIFDVSSCAIQDPTKGWTIGQGRRVANLYVLDVK 503
Query: 296 VTPQSHLSPHISCNSIGGHILWHSRLGHPSTPRL----HALKTVLNLNKIVDDTHCVVCP 129
+P + N++ LWH RLGHPS RL AL T + NK D HC VC
Sbjct: 504 SSP-------MKINAVVDISLWHKRLGHPSYTRLDKISEALGTTKHKNK--GDAHCHVCH 554
Query: 128 LAKQRRLAYTTSDSQS*QIFDLIHCDIWGPFSPCTTKGHKYF 3
LAKQ++L+Y++ + F L+H D+WGPFS T +G+KYF
Sbjct: 555 LAKQKKLSYSSQNHICTASFQLLHVDVWGPFSVETLEGYKYF 596
Score = 43.9 bits (102), Expect(3) = 2e-59
Identities = 25/100 (25%), Positives = 46/100 (46%)
Frame = -2
Query: 1300 CNCGGLKAWNDYHQFEYTLQFLMGLNDSYSQIRAQILLMDPMPPISKVFSLVVQKERQRM 1121
C CG + ++FL GLNDSY+ IR QI++ +P + +V++++ Q + Q+
Sbjct: 163 CVCGNAEKLQKKVDRAKIVKFLAGLNDSYAIIRRQIIMKKVLPSLVEVYNILDQDDSQKG 222
Query: 1120 IHRGISVCSDGKNSNDTVDSVSAAIKMNNGRKERDKPFCT 1001
I+ + + N A I + +P C+
Sbjct: 223 FSTAITPAAFNVSENVPPPMAEAGICYVQTGPNKGRPICS 262
Score = 36.6 bits (83), Expect(3) = 2e-59
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -3
Query: 999 CQRDNHTIETCYKLHGFPPGY 937
C R H E CYK HGFPPG+
Sbjct: 264 CNRVGHIAERCYKKHGFPPGF 284
>ref|XP_013617588.1| PREDICTED: uncharacterized protein LOC106324114 [Brassica oleracea
var. oleracea]
Length = 746
Score = 191 bits (484), Expect(3) = 3e-59
Identities = 112/289 (38%), Positives = 161/289 (55%), Gaps = 18/289 (6%)
Frame = -1
Query: 815 VDKLTNNQCQQLIALLSSQLHTNSTSEVGQPTASVSSFSG----------IDTKSFCLSA 666
V+ LT +Q Q++I ++Q+ ++ QPT+ + S SG +K+ C S
Sbjct: 398 VNSLTKDQIQEVIEYFNAQM------QLSQPTSDIPSTSGGTITALPGMAFSSKTLCFSG 451
Query: 665 V---ASHPISKSSWIIDTGATHHVCCTLSLFQSYHPISTAHISLPTGHSLNVHHIGTIIF 495
+ H +S SWIID+GATHHVC SLF + +SLPTG + + IG +
Sbjct: 452 ILRTTGHVLSSESWIIDSGATHHVCHDRSLFSALSDTVNISVSLPTGLGVQIIGIGQVKL 511
Query: 494 PSGLTLHHVLFVPDFHFNILSVSSLTAHQSYSINFLAHSCFIQDPSVGKKIGMGRRIGNL 315
+ L++VLF+PDF N+LSVS LT + + F S IQD + G IG G I NL
Sbjct: 512 NESMILNNVLFIPDFRLNLLSVSQLTKDLGFRVAFDDDSYVIQDLTKGLTIGQGEEIQNL 571
Query: 314 YVLDETVTPQSHL--SPHISCNSIGGHILWHSRLGHPSTPRLHALKTVLNL---NKIVDD 150
YVLD +S L SP + N + LWH RLGHPS +L ++ VL L NK +
Sbjct: 572 YVLDRASLGRSTLITSPFYT-NIVVDASLWHHRLGHPSIQKLDSIANVLGLSQRNKTL-- 628
Query: 149 THCVVCPLAKQRRLAYTTSDSQS*QIFDLIHCDIWGPFSPCTTKGHKYF 3
+HC +CPLAKQ+ L + + + + F+L+H +IWGPFS + +G+KYF
Sbjct: 629 SHCAICPLAKQKHLPFISHKNMCIEAFELLHINIWGPFSVPSIEGYKYF 677
Score = 44.3 bits (103), Expect(3) = 3e-59
Identities = 22/60 (36%), Positives = 37/60 (61%)
Frame = -2
Query: 1297 NCGGLKAWNDYHQFEYTLQFLMGLNDSYSQIRAQILLMDPMPPISKVFSLVVQKERQRMI 1118
NC KA + + ++FL GLN+SYS R+QI++ +P +++V++L+ Q QR I
Sbjct: 240 NCECCKATHTKTEHTKIIKFLAGLNESYSNARSQIIMKKHIPDLAEVYNLLDQDYSQRSI 299
Score = 44.3 bits (103), Expect(3) = 3e-59
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = -3
Query: 1026 RKEINLFAHCQRDNHTIETCYKLHGFPPGYNKGR 925
R+ +++HC HT++ CYK+HG+PPG+ R
Sbjct: 331 RQARQMYSHCGYSGHTVDKCYKVHGYPPGFKSKR 364
>ref|XP_013713394.1| PREDICTED: uncharacterized protein LOC106417081 [Brassica napus]
Length = 636
Score = 191 bits (486), Expect(3) = 1e-58
Identities = 112/289 (38%), Positives = 162/289 (56%), Gaps = 18/289 (6%)
Frame = -1
Query: 815 VDKLTNNQCQQLIALLSSQLHTNSTSEVGQPTASVSSFSG----------IDTKSFCLSA 666
V+ LT +Q Q++I ++Q+ ++ QPT+ + S SG +K+ C S
Sbjct: 288 VNSLTKDQIQEVIEYFNAQM------QLSQPTSDIPSTSGGTITALPGMAFSSKTLCFSG 341
Query: 665 V---ASHPISKSSWIIDTGATHHVCCTLSLFQSYHPISTAHISLPTGHSLNVHHIGTIIF 495
+ H +S SWIID+GATHHVC SLF + +SLPTG + + IG +
Sbjct: 342 ILRTTGHVLSSESWIIDSGATHHVCHDRSLFSALSDTVNISVSLPTGLGVQIIGIGQVKL 401
Query: 494 PSGLTLHHVLFVPDFHFNILSVSSLTAHQSYSINFLAHSCFIQDPSVGKKIGMGRRIGNL 315
+ L++VLF+PDF N+LSVS LT + + F S IQD + G IG G I NL
Sbjct: 402 NESMILNNVLFIPDFRLNLLSVSQLTKDLGFRVAFDDDSYVIQDLTKGLTIGQGEEIQNL 461
Query: 314 YVLDETVTPQSHL--SPHISCNSIGGHILWHSRLGHPSTPRLHALKTVLNL---NKIVDD 150
YVLD +S L SP + N + LWH RLGHPS +L ++ VL L NK +
Sbjct: 462 YVLDRASLGRSTLITSPFYT-NIVVDASLWHHRLGHPSIQKLDSIANVLGLSQRNKTL-- 518
Query: 149 THCVVCPLAKQRRLAYTTSDSQS*QIFDLIHCDIWGPFSPCTTKGHKYF 3
+HC +CPLAKQ+ L + + ++ + F+L+H +IWGPFS + +G+KYF
Sbjct: 519 SHCAICPLAKQKHLPFISHNNMCTEAFELLHINIWGPFSVPSIEGYKYF 567
Score = 44.7 bits (104), Expect(3) = 1e-58
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = -3
Query: 1026 RKEINLFAHCQRDNHTIETCYKLHGFPPGYNKGR 925
R+ +++HC HT++ CYK+HG+PPG+ R
Sbjct: 221 RQASQMYSHCGYSGHTVDKCYKVHGYPPGFKSKR 254
Score = 41.2 bits (95), Expect(3) = 1e-58
Identities = 21/60 (35%), Positives = 36/60 (60%)
Frame = -2
Query: 1297 NCGGLKAWNDYHQFEYTLQFLMGLNDSYSQIRAQILLMDPMPPISKVFSLVVQKERQRMI 1118
NC KA + + ++FL GLN+SYS +QI++ +P +++V++L+ Q QR I
Sbjct: 130 NCECCKATHTKTEHTKIIKFLAGLNESYSNACSQIIMKKHIPDLAEVYNLLDQDYSQRSI 189
>emb|CAN83990.1| hypothetical protein VITISV_018454 [Vitis vinifera]
Length = 1243
Score = 209 bits (532), Expect = 7e-56
Identities = 121/285 (42%), Positives = 167/285 (58%), Gaps = 5/285 (1%)
Frame = -1
Query: 842 VTGGSQNTLVDKLTNNQCQQLIALLSSQLHTNSTSEVGQPTA--SVSSFSGIDTKSFCLS 669
+ GS + V LT QCQQLI LL++QL + S++ + SVS+F+G K
Sbjct: 220 LNAGSSESXVSSLTTMQCQQLIQLLTNQLSSTSSASTENSSTGPSVSNFAGNKVK----- 274
Query: 668 AVASHPISKSSWIIDTGATHHVCCTLSLFQSYHPISTAHISLPTGHSLNVHHIGTIIFPS 489
I WIID+GATHHVC +SLF S + ++LPTG ++ + +G++I
Sbjct: 275 ------IQNKGWIIDSGATHHVCNXISLFDSSIXVQNVRVTLPTGITVPIDRVGSVILSK 328
Query: 488 GLTLHHVLFVPDFHFNILSVSSLTAHQSYSINFLAHSCFIQDPSVGKKIGMGRRIGNLYV 309
+ L +VLFVP F +N+LSVS+ T S S+ F +C IQ PS GK IG G R G LY
Sbjct: 329 DVKLLNVLFVPTFRYNLLSVSAFTDTLSLSMVFTPDACIIQXPSRGKMIGKGSRKGQLYQ 388
Query: 308 L--DETVTPQSHL-SPHISCNSIGGHILWHSRLGHPSTPRLHALKTVLNLNKIVDDTHCV 138
L D V ++ + + I ++I LWHSRLGHPS RL L++VL+ + D T C
Sbjct: 389 LDFDSFVADKAFVAASRIPTSNILS--LWHSRLGHPSFSRLKGLQSVLDFDSSFDLTPCX 446
Query: 137 VCPLAKQRRLAYTTSDSQS*QIFDLIHCDIWGPFSPCTTKGHKYF 3
VCPLAKQR L Y + + + FDL+H DIWGPFS + +G+K+F
Sbjct: 447 VCPLAKQRCLPYISLNKRCSSTFDLLHLDIWGPFSVGSVEGYKFF 491
>gb|AJY78067.1| putative polyprotein [Glycine max]
Length = 886
Score = 160 bits (404), Expect(3) = 3e-53
Identities = 106/307 (34%), Positives = 163/307 (53%), Gaps = 21/307 (6%)
Frame = -1
Query: 860 DNSQRVVTG-GSQNT----LVDKLTNNQCQQLIALLS--SQLHTNSTSEVGQPTASVSSF 702
D +RV + SQNT + LT Q +L+ L+ S H N+++ + + +
Sbjct: 305 DGGERVESSTASQNTTSVTMTPSLTQEQLDKLLQLIQPPSVNHCNASTSKQVCSFNTAGP 364
Query: 701 SGIDTKS-----FCLSAVASHPISKSSWIIDTGATHHVCCTLSLFQSYHPISTAHISLPT 537
S DTK F S++ ++ I+ +WIID+GA+HH+C +L F SY I+ I LP
Sbjct: 365 SSADTKGMKISHFFYSSICNN-IALDTWIIDSGASHHICASLHWFHSYSEINPMIIKLPN 423
Query: 536 GHSLNVHHIGTIIFPSGLTLHHVLFVPDFHFNILSVSSLTAHQSYSINFLAHSCFIQDPS 357
G+ + + GT++F S ++ +VL+VP F N++SVS L H Y++NF C IQ+
Sbjct: 424 GNHVTTKYAGTVVFSSSFSITNVLYVPTFTVNLISVSQLCHHTPYTLNFTDTICSIQEQK 483
Query: 356 VGKKIGMGRRIGNLYVLDETVTPQSHLSPHI-----SCNS--IGGHILWHSRLGHPSTPR 198
K IG+G LY L +T + + +I S N+ I + +WH RLGH S+ R
Sbjct: 484 SLKMIGLGESRDGLYYLTQTNKECASSNYNISSIFSSANNVHIPENAIWHFRLGHLSSSR 543
Query: 197 LHALKTVLNLNKIVDDTH--CVVCPLAKQRRLAYTTSDSQS*QIFDLIHCDIWGPFSPCT 24
+ L + IV+D+ C +C AK R+L + S ++ + FDLIH DIWGP S +
Sbjct: 544 IALLHSQFPF--IVNDSSSVCDICHFAKHRKLPFVHSYHKAIKCFDLIHFDIWGPISIKS 601
Query: 23 TKGHKYF 3
H YF
Sbjct: 602 VHNHAYF 608
Score = 64.7 bits (156), Expect(3) = 3e-53
Identities = 34/103 (33%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Frame = -2
Query: 1300 CNCGGLKAWNDYHQFEYTLQFLMGLNDSYSQIRAQILLMDPMPPISKVFSLVVQKERQRM 1121
C+C ++ +H + ++FL GLND ++ +++QILL++P+P I+K+FS+V+Q ERQ
Sbjct: 175 CSCDAMRLARRHHHTLHVMRFLTGLNDEFNAVKSQILLIEPLPSITKIFSMVIQFERQNC 234
Query: 1120 IHRGISVCSDGK---NSNDTVDSVSAAIKMNNGRKERDKPFCT 1001
+ D K N++ + SA + N+G K +CT
Sbjct: 235 VPN----LDDSKALVNASTSKSQGSANGRSNSGSKR----YCT 269
Score = 34.7 bits (78), Expect(3) = 3e-53
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 1002 HCQRDNHTIETCYKLHGFPPGYNKGRNGN 916
+C + NH +E C++ HG PP K +G+
Sbjct: 270 YCHKTNHFVENCFQKHGVPPHMMKNHSGS 298
>gb|KYP61050.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 515
Score = 138 bits (348), Expect(3) = 3e-53
Identities = 85/261 (32%), Positives = 135/261 (51%), Gaps = 3/261 (1%)
Frame = -1
Query: 806 LTNNQCQQLIALLSSQLHTNSTSEVGQPTASVSSFSGIDTKSFCLSAVASHPISKSSWII 627
LT+ QCQQLI L++Q+ +++ + A ++ +GI C++ P ++WII
Sbjct: 268 LTHAQCQQLITFLTNQMQSDNNLD-----ALATNVTGI-----CMNV--EFPDKDNTWII 315
Query: 626 DTGATHHVCCTLSLFQSYHPISTAHISLPTGHSLNVHHIGTIIFPSGLTLHHVLFVPDFH 447
D+GAT H+CC+ +++ SY P+ +++ LP + V IG+I + LH+VL +P+F
Sbjct: 316 DSGATSHICCSKNMYNSYSPLHNSNVLLPNSTKVKVEGIGSIRLNDDIFLHNVLHIPNFR 375
Query: 446 FNILSVSSLTAHQSYSINFLAHSCFIQDPSVGKKIGMGRRIGNLYVLDETVTPQSHLSPH 267
FN+LS+ +L + +SC +QD +KIG+ ++ L + D P+S L+
Sbjct: 376 FNLLSLLTLINENCFRFVLDTNSCILQDLKTLRKIGIVKQHHGLLLFD---FPKSDLNS- 431
Query: 266 ISCNSIGGHI---LWHSRLGHPSTPRLHALKTVLNLNKIVDDTHCVVCPLAKQRRLAYTT 96
CN I I WH RLGH T + L+ I + HC C LAKQ RL +T
Sbjct: 432 -VCNQISNSITYDTWHQRLGHVPTFVYRLITNKTQLSAIDSNFHCSTCHLAKQNRLPFTN 490
Query: 95 SDSQS*QIFDLIHCDIWGPFS 33
++ F C G FS
Sbjct: 491 PNNFRANFFLFNSCRYLGTFS 511
Score = 80.9 bits (198), Expect(3) = 3e-53
Identities = 42/104 (40%), Positives = 64/104 (61%), Gaps = 5/104 (4%)
Frame = -2
Query: 1300 CNCGGLKAWNDYHQFEYTLQFLMGLNDSYSQIRAQILLMDPMPPISKVFSLVVQKERQRM 1121
C CGGL++ ++ Q EY + FLMGLNDS+SQIR QILL DP+P I VFSL++Q+E Q
Sbjct: 119 CTCGGLQSLQEHTQSEYVMSFLMGLNDSFSQIRGQILLSDPLPSIGNVFSLILQEEAQ-- 176
Query: 1120 IHRGISVCSDGKNSNDTVDSVSAAIKMN-----NGRKERDKPFC 1004
+ I++ +S V+ K++ +G ++++P C
Sbjct: 177 --KEIAITHSSNDSEHMAFIVNQPAKIHSDSNKSGFTKKERPKC 218
Score = 40.0 bits (92), Expect(3) = 3e-53
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = -3
Query: 1026 RKEINLFAHCQRDNHTIETCYKLHGFPPGYNKGR 925
+KE AHC+ HT + CYKL G+PP Y K R
Sbjct: 212 KKERPKCAHCEMFGHTKDKCYKLVGYPPNYFKNR 245
>emb|CAN76546.1| hypothetical protein VITISV_010420 [Vitis vinifera]
Length = 1288
Score = 200 bits (508), Expect = 1e-52
Identities = 115/270 (42%), Positives = 162/270 (60%), Gaps = 5/270 (1%)
Frame = -1
Query: 797 NQCQQLIALLSSQLHTNSTSEVGQPTA--SVSSFSGIDTKSFCLSAVASHPISKSSWIID 624
++CQQLI LL++QL + S++ + SVS+F+G K I WIID
Sbjct: 236 SKCQQLIQLLTNQLSSTSSASTENSSTGPSVSNFAGNKVK-----------IQNKGWIID 284
Query: 623 TGATHHVCCTLSLFQSYHPISTAHISLPTGHSLNVHHIGTIIFPSGLTLHHVLFVPDFHF 444
+GATHHVC +SLF S + ++LPTG ++ + +G++I + L +VLFVP F +
Sbjct: 285 SGATHHVCNDISLFDSSIDVQNVRVTLPTGITVPIDRVGSVILSKDVKLLNVLFVPTFRY 344
Query: 443 NILSVSSLTAHQSYSINFLAHSCFIQDPSVGKKIGMGRRIGNLYVL--DETVTPQSHL-S 273
N+LSVS+ T S S+ F +C IQ+PS GK IG G R G LY L D V ++ + +
Sbjct: 345 NLLSVSAFTDTLSLSMVFTPDACIIQEPSRGKMIGKGSRKGQLYQLDFDSFVADKAFVAA 404
Query: 272 PHISCNSIGGHILWHSRLGHPSTPRLHALKTVLNLNKIVDDTHCVVCPLAKQRRLAYTTS 93
I ++I LWHSRLGHPS RL L++VL+ + D T C VCPLAKQR L Y +
Sbjct: 405 SRIPTSNILS--LWHSRLGHPSFSRLKGLQSVLDFDSSFDLTPCNVCPLAKQRCLPYISL 462
Query: 92 DSQS*QIFDLIHCDIWGPFSPCTTKGHKYF 3
+ + FDL+H DIWGPFS + +G+K+F
Sbjct: 463 NKRCSSTFDLLHLDIWGPFSVGSVEGYKFF 492
Score = 100 bits (250), Expect = 4e-19
Identities = 49/94 (52%), Positives = 62/94 (65%), Gaps = 6/94 (6%)
Frame = -2
Query: 1303 ICNCGGLKAWNDYHQFEYTLQFLMGLNDSYSQIRAQILLMDPMPPISKVFSLVVQKERQR 1124
+C+CGGL+ W DY EY LQFLMGLNDSY+QIR QIL+MDP+P I+KVFSLV+Q+E R
Sbjct: 131 VCHCGGLRVWTDYQHREYVLQFLMGLNDSYAQIRGQILMMDPLPAINKVFSLVIQEEXHR 190
Query: 1123 MIHRGISVCSD------GKNSNDTVDSVSAAIKM 1040
+ S + G NSN S A+K+
Sbjct: 191 TVGYSYSGSHNSDPMTFGSNSNAPAGSFQVALKL 224
>emb|CAN81016.1| hypothetical protein VITISV_025518 [Vitis vinifera]
Length = 1461
Score = 144 bits (363), Expect(3) = 1e-51
Identities = 99/286 (34%), Positives = 136/286 (47%), Gaps = 1/286 (0%)
Frame = -1
Query: 857 NSQRVVTGGSQNTLVDKLTNNQCQQLIALLSSQLHTNSTSEVGQPTASVSSFSGIDTKSF 678
N+ +V T + T L N +L +QL G + ++ +GI+ S
Sbjct: 339 NNVKVETNKAVETEAKLLPTNDGPRLTTEEYNQLMAMIRKNNGGNSQHFANATGINMSSS 398
Query: 677 CLSAVASHPISKSSWIIDTGATHHVCCTLSLFQSYHPISTAHISLPTGHSLNVHHIGTII 498
+ + + P S WIID+GAT HV + L + T ISLP G ++ IG++
Sbjct: 399 KI--IPNCPHSNMCWIIDSGATDHVTSSAELLDPKNLPKTTTISLPNGGQAHIESIGSLH 456
Query: 497 FPSGLTLHHVLFVPDFHFNILSVSSLTAHQSYSINFLAHSCFIQDPSVGKKIGMGRRIGN 318
+ L VL VP F N+LSVS LT + F C +QD + K IG+G++
Sbjct: 457 VTPHIKLDDVLKVPQFQVNLLSVSKLTRALQCIVMFFFDFCVVQDATTRKTIGLGKQHNG 516
Query: 317 LYVLDETVTPQSHLSPHISCNSIGGHILWHSRLGHPSTPRLHALKTVLNLNKIVDDTH-C 141
LY L + P + H + LWH RLGHPS+ L L V N D H C
Sbjct: 517 LYYLAQDQNPALAYAIHKHSD------LWHQRLGHPSSGPLQVLAKV-NPKIYFDSKHVC 569
Query: 140 VVCPLAKQRRLAYTTSDSQS*QIFDLIHCDIWGPFSPCTTKGHKYF 3
+CPLAKQ RL++ +S S FDLIHCDIWGP + G YF
Sbjct: 570 DICPLAKQTRLSFPSSFISSHAPFDLIHCDIWGPHRINSHSGAXYF 615
Score = 70.9 bits (172), Expect(3) = 1e-51
Identities = 32/58 (55%), Positives = 44/58 (75%)
Frame = -2
Query: 1300 CNCGGLKAWNDYHQFEYTLQFLMGLNDSYSQIRAQILLMDPMPPISKVFSLVVQKERQ 1127
C+CGGL+ + + E +QFLMGLNDSY+ IR QILLM P+P +V+SLV+Q+E+Q
Sbjct: 203 CSCGGLEKLKERDEKERVMQFLMGLNDSYAAIRGQILLMHPLPDTRRVYSLVLQQEKQ 260
Score = 38.9 bits (89), Expect(3) = 1e-51
Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = -3
Query: 1005 AHCQRDNHTIETCYKLHGFPPGYN-KGRN 922
++C RD H+IE CY LHGFP G+ G+N
Sbjct: 299 SYCDRDYHSIEKCYYLHGFPIGHKLHGKN 327
>gb|KYP68426.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1423
Score = 159 bits (403), Expect(3) = 2e-51
Identities = 113/289 (39%), Positives = 147/289 (50%), Gaps = 4/289 (1%)
Frame = -1
Query: 857 NSQRVVTGGSQNTLVDKLTNNQCQQLIALLSSQLHTNSTSEVGQPTASVSSFSGIDTKSF 678
+SQRVV+ S N T Q Q L+ALL T+S S V Q A S S
Sbjct: 295 HSQRVVSHNSGNMF----TPEQHQALLALLQQSGSTSSHS-VNQ-LAGPSILSSPKPPGM 348
Query: 677 CLSAVASHPISKSSWIIDTGATHHVCCTLSLFQSYHPISTAHISLPTGHSLNVHHIGTII 498
LS SH + WIIDTGAT HVC ++ FQSY I I LP G ++ GT++
Sbjct: 349 ILSFPYSH--NSDCWIIDTGATDHVCKNINFFQSYRRIKPILIQLPNGSQVSTCVSGTVL 406
Query: 497 FPSGLTLHHVLFVPDFHFNILSVSSLTAHQSYSINFLAHSCFIQDPSVGKKIGMGRRIGN 318
L VLF+P+FHFN++SVS L S ++ F C IQ + IG
Sbjct: 407 LSKTCYLTDVLFIPNFHFNLISVSKLAKTLSCTLTFSDSDCQIQANHSMRMIGAAELRAG 466
Query: 317 LYVLDETVTPQSHLSPHISCNSIGGHI-LWHSRLGHPSTPRLHALK---TVLNLNKIVDD 150
LY + +P+S++ H + + LWH RLGH S +L ALK + NKI
Sbjct: 467 LYAM--VSSPESNVVHHCTSHFFTYQSDLWHLRLGHLSHDKLSALKGSYPEIQCNKI--S 522
Query: 149 THCVVCPLAKQRRLAYTTSDSQS*QIFDLIHCDIWGPFSPCTTKGHKYF 3
C +C LAK +RL + S ++S +FDLIH DIWGP S + GHKYF
Sbjct: 523 LPCEICHLAKHKRLPFPDSLTKSENVFDLIHVDIWGPLSVASIFGHKYF 571
Score = 58.2 bits (139), Expect(3) = 2e-51
Identities = 22/43 (51%), Positives = 36/43 (83%)
Frame = -2
Query: 1255 EYTLQFLMGLNDSYSQIRAQILLMDPMPPISKVFSLVVQKERQ 1127
E ++FL GLN+ YS +R+Q++LMDP+P + KVFS+++Q+ER+
Sbjct: 168 ECVIRFLKGLNEQYSNVRSQVMLMDPLPSVQKVFSMILQQERE 210
Score = 35.0 bits (79), Expect(3) = 2e-51
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -3
Query: 1005 AHCQRDNHTIETCYKLHGFPPGYNKGRNGNQ 913
+HC R H +++CYK HG P + GR NQ
Sbjct: 249 SHCGRIGHLVDSCYKKHGPPLQHKHGRIVNQ 279
>gb|KYP66809.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 432
Score = 154 bits (389), Expect(3) = 3e-51
Identities = 93/276 (33%), Positives = 139/276 (50%)
Frame = -1
Query: 830 SQNTLVDKLTNNQCQQLIALLSSQLHTNSTSEVGQPTASVSSFSGIDTKSFCLSAVASHP 651
S T LT QCQQL+ +++Q+ T++ + A S+ G C++
Sbjct: 168 STTTQTSNLTPAQCQQLLTFVTNQMRTDTNLD-----AVASNVIGT-----CMNL--DFH 215
Query: 650 ISKSSWIIDTGATHHVCCTLSLFQSYHPISTAHISLPTGHSLNVHHIGTIIFPSGLTLHH 471
+ +WIID+GAT H+CC+ SL+ SY I +H+ LP +NV IG+I + LH+
Sbjct: 216 KNSHTWIIDSGATSHICCSKSLYNSYTSIHNSHVLLPNSTKVNVEGIGSIKINDDIFLHN 275
Query: 470 VLFVPDFHFNILSVSSLTAHQSYSINFLAHSCFIQDPSVGKKIGMGRRIGNLYVLDETVT 291
VL++P F FN+LS+ +L + + ++S +QD + IG ++ L V E T
Sbjct: 276 VLYIPTFRFNLLSLLTLINNNPFRFTMESNSFLLQDLKTLRTIGTAKQQQGLLVF-EFPT 334
Query: 290 PQSHLSPHISCNSIGGHILWHSRLGHPSTPRLHALKTVLNLNKIVDDTHCVVCPLAKQRR 111
+ +CNS+ + WH RLGH + + L I HC C +AKQ R
Sbjct: 335 HILNFDCISNCNSV-TYETWHKRLGHIPVFVYKLIANKIELTSIDSTYHCSTCHIAKQNR 393
Query: 110 LAYTTSDSQS*QIFDLIHCDIWGPFSPCTTKGHKYF 3
L + + S FDLIH DIWGPF T G +YF
Sbjct: 394 LPFPNPNKFSPNCFDLIHADIWGPFKQPTYDGFRYF 429
Score = 59.7 bits (143), Expect(3) = 3e-51
Identities = 28/46 (60%), Positives = 35/46 (76%)
Frame = -2
Query: 1255 EYTLQFLMGLNDSYSQIRAQILLMDPMPPISKVFSLVVQKERQRMI 1118
EY + F MGLNDS+SQI QILL DP+P I VFSL++Q++ QR I
Sbjct: 42 EYVMSFSMGLNDSFSQICGQILLSDPLPSIGNVFSLILQEKAQREI 87
Score = 38.9 bits (89), Expect(3) = 3e-51
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = -3
Query: 1026 RKEINLFAHCQRDNHTIETCYKLHGFPPGYNKGRNGNQKRYIRGQVKS 883
+KE HC HT + CYKL G+PP Y K R N + ++S
Sbjct: 120 KKERPKCGHCAMLGHTKDRCYKLVGYPPNYFKNRTPNIVNQVDNSLES 167
>gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1454
Score = 196 bits (497), Expect = 3e-51
Identities = 116/283 (40%), Positives = 162/283 (57%), Gaps = 7/283 (2%)
Frame = -1
Query: 830 SQNTLVDKLTNNQCQQLIALLSSQLHTNSTSEVGQPTASVSSFSGI----DTKSFC-LSA 666
S ++V L+ Q QQ IA+ SSQL S + S S GI T SF +
Sbjct: 361 SLESMVGNLSKEQLQQFIAMFSSQLQNTPPSTYATASTSQSDNLGICFSPSTYSFIGILT 420
Query: 665 VASHPISKSSWIIDTGATHHVCCTLSLFQSYHPISTAHISLPTGHSLNVHHIGTIIFPSG 486
VA H +S ++W+ID+GATHHV SLF S + ++LPTG ++ + +GT+
Sbjct: 421 VARHTLSSATWVIDSGATHHVSHDRSLFSSLDTSVLSAVNLPTGPTVKISGVGTLKLNDD 480
Query: 485 LTLHHVLFVPDFHFNILSVSSLTAHQSYSINFLAHSCFIQDPSVGKKIGMGRRIGNLYVL 306
+ L +VLF+P+F N++S+SSLT + F +SC IQD G+ +G GRR+ NLY+L
Sbjct: 481 ILLKNVLFIPEFRLNLISISSLTDDIGSRVIFDKNSCEIQDLIKGRMLGQGRRVANLYLL 540
Query: 305 DETVTPQSHLSPHISCNSIGGHILWHSRLGHPSTPRLHALKTVLNL--NKIVDDTHCVVC 132
D V QS IS N++ +WH RLGH S RL A+ L +K C VC
Sbjct: 541 D--VGDQS-----ISVNAVVDISMWHRRLGHASLQRLDAISDSLGTTRHKNKGSDFCHVC 593
Query: 131 PLAKQRRLAYTTSDSQS*QIFDLIHCDIWGPFSPCTTKGHKYF 3
LAKQR+L++ TS+ +IFDL+H D+WGPFS T +G+KYF
Sbjct: 594 HLAKQRKLSFPTSNKVCKEIFDLLHIDVWGPFSVETVEGYKYF 636
>gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1461
Score = 192 bits (487), Expect(2) = 9e-51
Identities = 112/291 (38%), Positives = 166/291 (57%), Gaps = 14/291 (4%)
Frame = -1
Query: 833 GSQNTLVDKLTNNQCQQLIALLSSQLH-------TNSTSEVGQPTASVSSFSGI--DTKS 681
G TL + +Q Q LIAL SSQL T S+ + SV+ SGI +
Sbjct: 365 GQLETLAGNFSPDQIQNLIALFSSQLQPQIVSPQTASSQHEASSSQSVAP-SGILFSPST 423
Query: 680 FC---LSAVASHPISKSSWIIDTGATHHVCCTLSLFQSYHPISTAHISLPTGHSLNVHHI 510
+C + AV+ + +S +W+ID+GATHHV LFQ+ + ++LPTG ++ + +
Sbjct: 424 YCFIGILAVSHNSLSSDTWVIDSGATHHVSHDRKLFQTLDTSIVSFVNLPTGPNVRISGV 483
Query: 509 GTIIFPSGLTLHHVLFVPDFHFNILSVSSLTAHQSYSINFLAHSCFIQDPSVGKKIGMGR 330
GT++ + L +VLF+P+F N++S+SSLT + F C IQD + G +G G+
Sbjct: 484 GTVLINKDIILQNVLFIPEFRLNLISISSLTTDLGTRVIFDPSCCQIQDLTKGLTLGEGK 543
Query: 329 RIGNLYVLDETVTPQSHLSPHISCNSIGGHILWHSRLGHPSTPRLHALKTVLNL--NKIV 156
RIGNLYVLD SP IS N++ +WH RLGHPS RL +L VL +K
Sbjct: 544 RIGNLYVLDTQ-------SPAISVNAVVDVSVWHKRLGHPSFSRLDSLSEVLGTTRHKNK 596
Query: 155 DDTHCVVCPLAKQRRLAYTTSDSQS*QIFDLIHCDIWGPFSPCTTKGHKYF 3
+C VC LAKQ++L++ ++++ F+L+H D+WGPFS T +G+KYF
Sbjct: 597 KSAYCHVCHLAKQKKLSFPSANNICNSTFELLHIDVWGPFSVETVEGYKYF 647
Score = 38.1 bits (87), Expect(2) = 9e-51
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -3
Query: 999 CQRDNHTIETCYKLHGFPPGYN-KGRNGNQ 913
C R H E CYK HGFPPG+ KG++ ++
Sbjct: 316 CNRVGHIAERCYKKHGFPPGFTPKGKSSDK 345
>ref|XP_009128559.1| PREDICTED: uncharacterized protein LOC103853393 [Brassica rapa]
Length = 964
Score = 187 bits (474), Expect(2) = 9e-51
Identities = 108/288 (37%), Positives = 156/288 (54%), Gaps = 12/288 (4%)
Frame = -1
Query: 830 SQNTLVDKLTNNQCQQLIALLSSQLHTNSTSEVGQPTASVSSFSGIDTKSFCLSAVA--- 660
S + +V+ LT +Q + +IA +SQL + S + + +F S +
Sbjct: 355 SVSNIVNNLTKDQIEGVIAYFNSQLKMQPIQANCVASTSGGMITALPGMAFSSSTLCFVG 414
Query: 659 -----SHPISKSSWIIDTGATHHVCCTLSLFQSYHPISTAHISLPTGHSLNVHHIGTIIF 495
S+ + +WIID+GATHHV LF + ++LPTG + + IG+I
Sbjct: 415 MLKATSNALCTKTWIIDSGATHHVAHDRDLFLDLTDSISTSVTLPTGLGIKIAGIGSIRL 474
Query: 494 PSGLTLHHVLFVPDFHFNILSVSSLTAHQSYSINFLAHSCFIQDPSVGKKIGMGRRIGNL 315
L L +VL++ DF N+LSVS LT Y + F +CFIQDP+ G IG G +I NL
Sbjct: 475 TDSLILRNVLYLSDFRLNLLSVSQLTKDLGYRVMFDPGACFIQDPTKGLMIGRGEQICNL 534
Query: 314 YVLDET-VTPQSHLSPH-ISCNSIGGHI-LWHSRLGHPSTPRLHALKTVLNLNKI-VDDT 147
YVLD +T S + SC+S+ + LWH+RLGHPS + + V I +
Sbjct: 535 YVLDAVDITGSSFIQQQSASCSSVVVDVSLWHNRLGHPSMSKTENIVDVFGFKHINKEPF 594
Query: 146 HCVVCPLAKQRRLAYTTSDSQS*QIFDLIHCDIWGPFSPCTTKGHKYF 3
HC +CPLAKQ+RL Y ++ S +FDL+H DIWGPFS T +G+K+F
Sbjct: 595 HCAICPLAKQKRLPYNPQNNMSQNVFDLLHIDIWGPFSVSTAEGYKHF 642
Score = 43.1 bits (100), Expect(2) = 9e-51
Identities = 16/33 (48%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = -3
Query: 1005 AHCQRDNHTIETCYKLHGFPPGY-NKGRNGNQK 910
AHC + HT++TCYK+HG+P G+ +KG+ K
Sbjct: 301 AHCGYNGHTVDTCYKIHGYPVGFKHKGKKQTDK 333
>ref|XP_010526678.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
1-94 isoform X1 [Tarenaya hassleriana]
Length = 1275
Score = 190 bits (483), Expect(2) = 2e-50
Identities = 108/288 (37%), Positives = 156/288 (54%), Gaps = 16/288 (5%)
Frame = -1
Query: 818 LVDKLTNNQCQQLIALLSSQLHTNSTSEVGQPTASVSSFSGIDTKSFCLSAVASHPISKS 639
+ + N Q +A + S L + GQ + S+ S + + ++ ++P+ +
Sbjct: 369 VAQSVDGNTGQNTLAQVHSLLSQLLSQHKGQGSVSLDSNFAVPSPPSPGISLVTYPLLTT 428
Query: 638 S----------WIIDTGATHHVCCTLSLFQSYHPISTAHISLPTGHSLNVHHIGTIIFPS 489
S WI+DTGA+ HVCC L LF H I +SLP G SL V GT++ S
Sbjct: 429 SPSNITFPTAVWILDTGASTHVCCNLGLFSEVHDIPVVSVSLPNGSSLKVTQAGTVLLSS 488
Query: 488 GLTLHHVLFVPDFHFNILSVSSLTAHQSYSINFLAHSCFIQDPSVGKKIGMGRRIGNLYV 309
+TL VLF+P FH+N+LSVS LT S S++F S IQD + G IG G+++ NLY+
Sbjct: 489 SITLSSVLFIPTFHYNLLSVSCLTQQTSCSVHFFRDSFIIQDLTRGLMIGKGKQLHNLYI 548
Query: 308 LDETVTPQSHLS-PHISCNSIGGHI--LWHSRLGHPSTPRLHALKTVLNLNKIVDDT--- 147
L+ T + +S P C ++ LWH RLGHPS R+H++ L +T
Sbjct: 549 LEMLHTSSTTISLPSKFCTTLSATTFDLWHHRLGHPSDIRVHSIDKSSELKFSTSETSSI 608
Query: 146 HCVVCPLAKQRRLAYTTSDSQS*QIFDLIHCDIWGPFSPCTTKGHKYF 3
C VCPLAKQRRL++ S S F+L+H D+WGP S +T GH++F
Sbjct: 609 SCPVCPLAKQRRLSFPVSSHVSKFPFELLHVDVWGPCSEISTDGHRFF 656
Score = 38.5 bits (88), Expect(2) = 2e-50
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 1002 HCQRDNHTIETCYKLHGFPPGYNKGRNGNQK 910
HC H + C++LHG+PPG+ N N +
Sbjct: 306 HCGMTGHVVSRCFRLHGYPPGHKSHPNWNSR 336
>ref|XP_010526681.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
1-94 isoform X3 [Tarenaya hassleriana]
Length = 1238
Score = 190 bits (483), Expect(2) = 2e-50
Identities = 108/288 (37%), Positives = 156/288 (54%), Gaps = 16/288 (5%)
Frame = -1
Query: 818 LVDKLTNNQCQQLIALLSSQLHTNSTSEVGQPTASVSSFSGIDTKSFCLSAVASHPISKS 639
+ + N Q +A + S L + GQ + S+ S + + ++ ++P+ +
Sbjct: 369 VAQSVDGNTGQNTLAQVHSLLSQLLSQHKGQGSVSLDSNFAVPSPPSPGISLVTYPLLTT 428
Query: 638 S----------WIIDTGATHHVCCTLSLFQSYHPISTAHISLPTGHSLNVHHIGTIIFPS 489
S WI+DTGA+ HVCC L LF H I +SLP G SL V GT++ S
Sbjct: 429 SPSNITFPTAVWILDTGASTHVCCNLGLFSEVHDIPVVSVSLPNGSSLKVTQAGTVLLSS 488
Query: 488 GLTLHHVLFVPDFHFNILSVSSLTAHQSYSINFLAHSCFIQDPSVGKKIGMGRRIGNLYV 309
+TL VLF+P FH+N+LSVS LT S S++F S IQD + G IG G+++ NLY+
Sbjct: 489 SITLSSVLFIPTFHYNLLSVSCLTQQTSCSVHFFRDSFIIQDLTRGLMIGKGKQLHNLYI 548
Query: 308 LDETVTPQSHLS-PHISCNSIGGHI--LWHSRLGHPSTPRLHALKTVLNLNKIVDDT--- 147
L+ T + +S P C ++ LWH RLGHPS R+H++ L +T
Sbjct: 549 LEMLHTSSTTISLPSKFCTTLSATTFDLWHHRLGHPSDIRVHSIDKSSELKFSTSETSSI 608
Query: 146 HCVVCPLAKQRRLAYTTSDSQS*QIFDLIHCDIWGPFSPCTTKGHKYF 3
C VCPLAKQRRL++ S S F+L+H D+WGP S +T GH++F
Sbjct: 609 SCPVCPLAKQRRLSFPVSSHVSKFPFELLHVDVWGPCSEISTDGHRFF 656
Score = 38.5 bits (88), Expect(2) = 2e-50
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 1002 HCQRDNHTIETCYKLHGFPPGYNKGRNGNQK 910
HC H + C++LHG+PPG+ N N +
Sbjct: 306 HCGMTGHVVSRCFRLHGYPPGHKSHPNWNSR 336
>emb|CAN65820.1| hypothetical protein VITISV_042324 [Vitis vinifera]
Length = 1262
Score = 145 bits (365), Expect(3) = 3e-50
Identities = 95/314 (30%), Positives = 153/314 (48%), Gaps = 21/314 (6%)
Frame = -1
Query: 881 NSGVIGTDNSQRVVTGGSQNTLVDKLTNN-------QCQQLIALLSSQLHTNSTSEVGQP 723
NS N QR+ T + N L +N+ Q Q L+ L +S ++N+
Sbjct: 283 NSTPTAAKNFQRLPTANNTNVLEQNSSNSNMIFSQEQIQNLLTLANSLSNSNTNFNAXSN 342
Query: 722 TASVSSFSGIDTKSFCLSAVASHPISKSSWIIDTGATHHVCCTLSLFQSYH-PISTAHIS 546
AS+S SF + ++S ++ +WI+D GAT+H+ + LF S P +++ +
Sbjct: 343 VASISG------NSFFYNTISSSK-NQFTWILDIGATYHMIYSPLLFDSIVLPKTSSKVH 395
Query: 545 LPTGHSLNVHHIGTIIFPSGLTLHHVLFVPDFHFNILSVSSLTAHQSYSINFLAHSCFIQ 366
LP G ++ + G++ F +TLH+ L+VP F+ N++S S LT S + FL C +Q
Sbjct: 396 LPNGKTVPIIFTGSVKFSPDITLHNALYVPSFNINLVSASRLTKDNSIGLFFLQSKCILQ 455
Query: 365 DPSVGKKIGMGRRIGNLYVLDETVT-------------PQSHLSPHISCNSIGGHILWHS 225
D S + IG L L + P S L + NS LWH
Sbjct: 456 DLSKWRMIGXAEVQSGLXHLQQLSAQXNKEMXSSSIGLPSSSLVESCTVNSD----LWHF 511
Query: 224 RLGHPSTPRLHALKTVLNLNKIVDDTHCVVCPLAKQRRLAYTTSDSQS*QIFDLIHCDIW 45
RLGH ++ + + + K + + C +CPLAKQ++L + S+SQS + F L+H +IW
Sbjct: 512 RLGHIPNAKIQLINSSDSSXKXIHNKVCXICPLAKQKKLPFPISNSQSNKAFQLVHXBIW 571
Query: 44 GPFSPCTTKGHKYF 3
GPFS + + +F
Sbjct: 572 GPFSIPSYSXYXFF 585
Score = 74.3 bits (181), Expect(3) = 3e-50
Identities = 39/102 (38%), Positives = 62/102 (60%), Gaps = 2/102 (1%)
Frame = -2
Query: 1300 CNCGGLKAWNDYHQFEYTLQFLMGLNDSYSQIRAQILLMDPMPPISKVFSLVVQKERQRM 1121
C+C LK D Q +Y ++FL+GL+DSYS IR+Q+LL P+P +S+VFSL++Q+E QR
Sbjct: 151 CSCNILKDLTDRQQSDYVMKFLVGLHDSYSAIRSQLLLQSPLPSMSRVFSLLLQEESQRS 210
Query: 1120 IHR--GISVCSDGKNSNDTVDSVSAAIKMNNGRKERDKPFCT 1001
+ GIS+ S + + +VS + +K + C+
Sbjct: 211 LTNAVGISIDSQAMVAEQSSRTVSTSNTQFTKQKGKSDAICS 252
Score = 29.6 bits (65), Expect(3) = 3e-50
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 1005 AHCQRDNHTIETCYKLHGFPPGYNKGRNG 919
+HC H ++ C++L G+PP + KG G
Sbjct: 252 SHCGYSGHLVDKCFQLIGYPPRW-KGPRG 279