BLASTX nr result
ID: Rehmannia27_contig00031334
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia27_contig00031334
(4082 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AKN59243.1| polyprotein [Cnidium vein yellowing virus 1] 2382 0.0
gb|AKN59247.1| polyprotein [Lychnis mottle virus] 2334 0.0
gb|AKN59245.1| polyprotein [Cnidium vein yellowing virus 2] 2331 0.0
ref|YP_227367.1| 250 kDa polyprotein [Strawberry latent ringspot... 2192 0.0
ref|YP_227373.1| polymerase [Strawberry latent ringspot virus] 1226 0.0
ref|YP_227372.1| protease [Strawberry latent ringspot virus] 500 e-164
ref|YP_227370.1| helicase [Strawberry latent ringspot virus] 452 e-142
gb|AAZ76594.1| polyprotein, partial [Stocky prune virus] 321 1e-90
ref|YP_009220374.1| polyprotein [Currant latent virus] gi|966557... 335 2e-90
gb|AHN52254.1| polyprotein, partial [Currant latent virus] 306 7e-86
ref|NP_734022.1| RNA-dependent RNA polymerase [Apple latent sphe... 303 6e-85
ref|NP_620568.1| 235K polyprotein [Apple latent spherical virus]... 313 1e-83
gb|AAW92113.2| polyprotein [Cherry rasp leaf virus] 312 3e-83
ref|YP_081454.1| RNA-dependent RNA polymerase [Cherry rasp leaf ... 296 1e-82
ref|YP_081444.1| polyprotein [Cherry rasp leaf virus] gi|8200270... 307 1e-81
ref|YP_007697622.1| polyprotein [Arracacha virus B] gi|385724523... 303 2e-80
gb|AAY56484.1| unknown, partial [Strawberry latent ringspot virus] 233 2e-71
gb|AGR55590.1| polyprotein [Lettuce necrotic leaf curl virus] 273 8e-71
ref|NP_951030.1| RNA-dependent RNA polymerase [Broad bean wilt v... 255 2e-68
ref|YP_002158831.1| unnamed protein product [Mikania micrantha m... 248 3e-68
>gb|AKN59243.1| polyprotein [Cnidium vein yellowing virus 1]
Length = 2205
Score = 2382 bits (6174), Expect = 0.0
Identities = 1163/1229 (94%), Positives = 1192/1229 (96%)
Frame = -1
Query: 4082 KAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDDRFQVMNYEQFLQYTVNQSKQ 3903
KAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDDRFQVMNYEQFLQYTVNQS+Q
Sbjct: 977 KAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDDRFQVMNYEQFLQYTVNQSRQ 1036
Query: 3902 HFSEQVDLRDAPHTQVFTAADQIAAEAEEGFRVAGIKVPFTMLKSLSGDQLTYYSEERMM 3723
HFSEQVDLRDAPHTQ+F AADQIAAEAEEGF+ AGIKVPFTMLKSLSGDQLTYYSEE+MM
Sbjct: 1037 HFSEQVDLRDAPHTQIFAAADQIAAEAEEGFQTAGIKVPFTMLKSLSGDQLTYYSEEKMM 1096
Query: 3722 EVTETLTPEDADIIRSRLDPGIITQQLQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCS 3543
E+TETLTPEDADIIRSRLDPG+ITQQLQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCS
Sbjct: 1097 EITETLTPEDADIIRSRLDPGVITQQLQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCS 1156
Query: 3542 QRAKVIGRFLRPKVTEEQLEQHKRGFATMAKELAQGACKAINDAPFLVKLLLGFGALYFV 3363
QRAKVIGRF++PKVTEEQLEQHKRGF +AKELAQGACKAINDAPFLVKLLLGFGALYFV
Sbjct: 1157 QRAKVIGRFMKPKVTEEQLEQHKRGFVVIAKELAQGACKAINDAPFLVKLLLGFGALYFV 1216
Query: 3362 GLPLLSWLKSLYTAPCLLTFATLGTMKASGSLSSSQDQXXXXXXXXXXXXRYLLEASGPG 3183
GLPLLSWLKSLYT PCLLTFATLGTMKASGSLSSSQDQ RYLLEASGPG
Sbjct: 1217 GLPLLSWLKSLYTTPCLLTFATLGTMKASGSLSSSQDQETRRTASGRERRRYLLEASGPG 1276
Query: 3182 AVEAKAQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCYKV 3003
AVEAKAQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCYKV
Sbjct: 1277 AVEAKAQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCYKV 1336
Query: 3002 GSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKLEKWLLSSHDPFMAGSGW 2823
GSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLK+EKWLLSSHDPFMAGSGW
Sbjct: 1337 GSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKIEKWLLSSHDPFMAGSGW 1396
Query: 2822 FMEMLFRGNGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTICDDTGTGYRNDF 2643
FMEMLFR +GVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTICDDTGTGYRNDF
Sbjct: 1397 FMEMLFRDHGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTICDDTGTGYRNDF 1456
Query: 2642 FYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITKEEYLEASLLLG 2463
FYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKD IIAGSGSLITKEEYLEASLLLG
Sbjct: 1457 FYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDAIIAGSGSLITKEEYLEASLLLG 1516
Query: 2462 EIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSGAPRQATTSEIKKSSISADLEAL 2283
EIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPS APRQATTSEI+KSSISADLEAL
Sbjct: 1517 EIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSEAPRQATTSEIRKSSISADLEAL 1576
Query: 2282 TGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAVAADMSPVTEEEEKIWDLTWDSIF 2103
TGEK+KTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAVAADMSPVTEEE+KIWDLTWDSIF
Sbjct: 1577 TGEKKKTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAVAADMSPVTEEEQKIWDLTWDSIF 1636
Query: 2102 DLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLP 1923
DLPGGIE+KCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLP
Sbjct: 1637 DLPGGIEKKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLP 1696
Query: 1922 GCYTLNRDLPMYQRILDMDELCATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPME 1743
GCYTLNRDLPMYQRILDMDELCATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPME
Sbjct: 1697 GCYTLNRDLPMYQRILDMDELCATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPME 1756
Query: 1742 YNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDG 1563
YNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDG
Sbjct: 1757 YNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDG 1816
Query: 1562 VTPRCLLIEIARRITLLYNDDQGDRRLHLMLAATTRLGVAGIGLYRVSGGIPSGFALTVI 1383
VTPRCLLIEIARRITLLYNDDQG+RRLHLMLAATTRLGVAGIGLYRVSGGIPSGFALTVI
Sbjct: 1817 VTPRCLLIEIARRITLLYNDDQGNRRLHLMLAATTRLGVAGIGLYRVSGGIPSGFALTVI 1876
Query: 1382 VNSLVNHFLVRWSWEHMMASSSLFFSDCVELAVVGDDNLVSVKEIAASEFNLKKLSSFLA 1203
VNSLVNHFLVRWSWEHMMAS+SLFFSDCVELAVVGDDNLVSVKE+AAS+FNLKKLS+FLA
Sbjct: 1877 VNSLVNHFLVRWSWEHMMASTSLFFSDCVELAVVGDDNLVSVKEVAASDFNLKKLSAFLA 1936
Query: 1202 DFGFTLKDGSDKSKEILPEFNPPEKCDFLKRCFKARGDRYLAPXXXXXXXXXLHWVRETN 1023
DFGFTLKDGSDK+KEILPEFNPPEKCDFLKRCFKARGDRYLAP LHWVRETN
Sbjct: 1937 DFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCFKARGDRYLAPLSWLSLSESLHWVRETN 1996
Query: 1022 MSNAVATQNNVEGFLRELFHYGDKELYCKWRRDLIDLCSKNRVPHPTTYSFEELERSWLS 843
MSNA ATQNNVEGFLRELFHYGDK LYCKWRRDLIDLCSKNRVPHPTTYSFEELERSWLS
Sbjct: 1997 MSNAAATQNNVEGFLRELFHYGDKNLYCKWRRDLIDLCSKNRVPHPTTYSFEELERSWLS 2056
Query: 842 GKSVASIFEKEESEVVVIRDGASDVAPGVHIVPVQQCLKWKTGEVPNVVWCGPNCPNQLR 663
GKSVASIFEKEE E++VIRD ASDVAPGVHIVPV+QCLKW GEVPNVVWCGPNCPNQLR
Sbjct: 2057 GKSVASIFEKEEPEIIVIRDSASDVAPGVHIVPVRQCLKWNAGEVPNVVWCGPNCPNQLR 2116
Query: 662 NANTCFQIQAPQGSRYPLRNTVRNLLKKVHQRGDEVYFTGALNQSLVHWVAAFYASMYRE 483
NA++CFQIQAPQGS+YPLRNT RNLLKKVHQRGDEVYFTG+LNQSLVHWVAAFYASMYRE
Sbjct: 2117 NASSCFQIQAPQGSKYPLRNTTRNLLKKVHQRGDEVYFTGSLNQSLVHWVAAFYASMYRE 2176
Query: 482 SFHHSTYMKAYFGDNDAGLLESTVAAKGW 396
SFHHS YMKAYFGDNDAGLLEST+AAKGW
Sbjct: 2177 SFHHSAYMKAYFGDNDAGLLESTMAAKGW 2205
>gb|AKN59247.1| polyprotein [Lychnis mottle virus]
Length = 2260
Score = 2334 bits (6048), Expect = 0.0
Identities = 1136/1229 (92%), Positives = 1177/1229 (95%)
Frame = -1
Query: 4082 KAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDDRFQVMNYEQFLQYTVNQSKQ 3903
+AFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDDRFQVMNYEQFLQY VNQS+Q
Sbjct: 1032 RAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDDRFQVMNYEQFLQYAVNQSQQ 1091
Query: 3902 HFSEQVDLRDAPHTQVFTAADQIAAEAEEGFRVAGIKVPFTMLKSLSGDQLTYYSEERMM 3723
HFSEQVDLRDAPHTQ+FTAADQIAAEAEEG R AGI++PF MLKSLSGDQLTYYSEE MM
Sbjct: 1092 HFSEQVDLRDAPHTQIFTAADQIAAEAEEGLRTAGIEIPFCMLKSLSGDQLTYYSEEEMM 1151
Query: 3722 EVTETLTPEDADIIRSRLDPGIITQQLQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCS 3543
EVTETL PE+ADI+RSRLDPG+ITQQLQ LLPKAAYVNLKNHFGLGTDPFEQPNPYFNCS
Sbjct: 1152 EVTETLAPEEADIVRSRLDPGVITQQLQALLPKAAYVNLKNHFGLGTDPFEQPNPYFNCS 1211
Query: 3542 QRAKVIGRFLRPKVTEEQLEQHKRGFATMAKELAQGACKAINDAPFLVKLLLGFGALYFV 3363
QRAKVIGRFL+PKVTEEQLEQ KRGF +AKELAQGACKAINDAPFLVKLLLGFGALYFV
Sbjct: 1212 QRAKVIGRFLKPKVTEEQLEQRKRGFMVVAKELAQGACKAINDAPFLVKLLLGFGALYFV 1271
Query: 3362 GLPLLSWLKSLYTAPCLLTFATLGTMKASGSLSSSQDQXXXXXXXXXXXXRYLLEASGPG 3183
G PLLSWL++LYTAPCLLTF TLG MKASGSLSSSQDQ RYLLEASGPG
Sbjct: 1272 GAPLLSWLRNLYTAPCLLTFTTLGAMKASGSLSSSQDQETRRTASGRERRRYLLEASGPG 1331
Query: 3182 AVEAKAQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCYKV 3003
AVEAKAQDVE+ELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLEL SGCYKV
Sbjct: 1332 AVEAKAQDVETELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELHSGCYKV 1391
Query: 3002 GSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKLEKWLLSSHDPFMAGSGW 2823
GSLTKTFPFTVNRK+CRFQRLGLKDLVI+DFPPTF SFPVLKLEKWLLSSHDPFMAGSGW
Sbjct: 1392 GSLTKTFPFTVNRKHCRFQRLGLKDLVIIDFPPTFASFPVLKLEKWLLSSHDPFMAGSGW 1451
Query: 2822 FMEMLFRGNGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTICDDTGTGYRNDF 2643
FMEMLF+ NGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTICDDTGTGYRNDF
Sbjct: 1452 FMEMLFQRNGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTICDDTGTGYRNDF 1511
Query: 2642 FYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITKEEYLEASLLLG 2463
FYVSQCGTPLVANYG+GKGLKIASIHVVHHFSAT+KDTIIAGSGSLITKEEYLEASLLLG
Sbjct: 1512 FYVSQCGTPLVANYGKGKGLKIASIHVVHHFSATEKDTIIAGSGSLITKEEYLEASLLLG 1571
Query: 2462 EIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSGAPRQATTSEIKKSSISADLEAL 2283
EIKHPLETDRIQASGCLSGEEFFDAETVFPEGLL PS APRQAT+SEIKKSSISADLE L
Sbjct: 1572 EIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLTPSDAPRQATSSEIKKSSISADLEIL 1631
Query: 2282 TGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAVAADMSPVTEEEEKIWDLTWDSIF 2103
TGEKRKTEPAIIHNRDTRLHDRHLDIFKKGM+KYKAVAADMSPVTEEEEK+W+LTWDSIF
Sbjct: 1632 TGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMMKYKAVAADMSPVTEEEEKVWNLTWDSIF 1691
Query: 2102 DLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLP 1923
DLPGGI KCHLL+EDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLP
Sbjct: 1692 DLPGGIAGKCHLLTEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLP 1751
Query: 1922 GCYTLNRDLPMYQRILDMDELCATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPME 1743
GCYTLNRDLPMYQRILDMDELC TTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPME
Sbjct: 1752 GCYTLNRDLPMYQRILDMDELCKTTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPME 1811
Query: 1742 YNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDG 1563
YNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDG
Sbjct: 1812 YNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDG 1871
Query: 1562 VTPRCLLIEIARRITLLYNDDQGDRRLHLMLAATTRLGVAGIGLYRVSGGIPSGFALTVI 1383
VTPRCLL+EI+RRIT LYND+QGDRRLHLMLAATTRLGVAGIGLYRVSGGIPSGFALTVI
Sbjct: 1872 VTPRCLLVEISRRITALYNDNQGDRRLHLMLAATTRLGVAGIGLYRVSGGIPSGFALTVI 1931
Query: 1382 VNSLVNHFLVRWSWEHMMASSSLFFSDCVELAVVGDDNLVSVKEIAASEFNLKKLSSFLA 1203
VNSLVNHFLVRWSWEHMMASSSLFFSDCVELAVVGDDNLVSVK+IAA++FNLKKLS FLA
Sbjct: 1932 VNSLVNHFLVRWSWEHMMASSSLFFSDCVELAVVGDDNLVSVKQIAAADFNLKKLSLFLA 1991
Query: 1202 DFGFTLKDGSDKSKEILPEFNPPEKCDFLKRCFKARGDRYLAPXXXXXXXXXLHWVRETN 1023
FGFTLKDGSDK+KEILPEFNPPEKCDFLKRCFKARGDRYLAP LHWVRETN
Sbjct: 1992 GFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCFKARGDRYLAPLSWLSLSESLHWVRETN 2051
Query: 1022 MSNAVATQNNVEGFLRELFHYGDKELYCKWRRDLIDLCSKNRVPHPTTYSFEELERSWLS 843
MSNA ATQNNVEGFLRELFHYGDK+LYCKWRRDLIDLCS+NRVPHPTTYSFEELERSWLS
Sbjct: 2052 MSNAAATQNNVEGFLRELFHYGDKDLYCKWRRDLIDLCSRNRVPHPTTYSFEELERSWLS 2111
Query: 842 GKSVASIFEKEESEVVVIRDGASDVAPGVHIVPVQQCLKWKTGEVPNVVWCGPNCPNQLR 663
GK+VASIFEKEE EV+VIRDGASD+APGVHIVPVQQCLKWK E+PNVVWCGPNCPNQLR
Sbjct: 2112 GKTVASIFEKEEPEVIVIRDGASDIAPGVHIVPVQQCLKWKPDEIPNVVWCGPNCPNQLR 2171
Query: 662 NANTCFQIQAPQGSRYPLRNTVRNLLKKVHQRGDEVYFTGALNQSLVHWVAAFYASMYRE 483
NA+TCFQIQAPQGS+YPLRNTVR+ LKKVHQRGD+VYFTGALNQSLVHWVAAFYASMYRE
Sbjct: 2172 NASTCFQIQAPQGSKYPLRNTVRSFLKKVHQRGDKVYFTGALNQSLVHWVAAFYASMYRE 2231
Query: 482 SFHHSTYMKAYFGDNDAGLLESTVAAKGW 396
SFHHS YMKAYFGDNDAGLLEST+AAKGW
Sbjct: 2232 SFHHSAYMKAYFGDNDAGLLESTMAAKGW 2260
>gb|AKN59245.1| polyprotein [Cnidium vein yellowing virus 2]
Length = 2209
Score = 2331 bits (6040), Expect = 0.0
Identities = 1134/1229 (92%), Positives = 1179/1229 (95%)
Frame = -1
Query: 4082 KAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDDRFQVMNYEQFLQYTVNQSKQ 3903
KAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDDRFQVMNYEQFLQY VNQSKQ
Sbjct: 981 KAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDDRFQVMNYEQFLQYAVNQSKQ 1040
Query: 3902 HFSEQVDLRDAPHTQVFTAADQIAAEAEEGFRVAGIKVPFTMLKSLSGDQLTYYSEERMM 3723
HFSEQVDLRDAPHTQ+F+AADQIAAEAEEGF+ AGIK+PF MLKSLSGDQLTYYSEE+MM
Sbjct: 1041 HFSEQVDLRDAPHTQIFSAADQIAAEAEEGFQTAGIKIPFCMLKSLSGDQLTYYSEEKMM 1100
Query: 3722 EVTETLTPEDADIIRSRLDPGIITQQLQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCS 3543
EVTETL PEDADIIRSRLDPG+ITQQLQ LLPKAAYVNLKNHF LGTDPFEQPNPYFNCS
Sbjct: 1101 EVTETLAPEDADIIRSRLDPGMITQQLQALLPKAAYVNLKNHFSLGTDPFEQPNPYFNCS 1160
Query: 3542 QRAKVIGRFLRPKVTEEQLEQHKRGFATMAKELAQGACKAINDAPFLVKLLLGFGALYFV 3363
QRAKVIGRF++PKVTEEQLE HKRGF +AKELAQGA KA++DAPFLVKLLLGFGALYFV
Sbjct: 1161 QRAKVIGRFMKPKVTEEQLEHHKRGFMMIAKELAQGAYKAVSDAPFLVKLLLGFGALYFV 1220
Query: 3362 GLPLLSWLKSLYTAPCLLTFATLGTMKASGSLSSSQDQXXXXXXXXXXXXRYLLEASGPG 3183
G PLLSWLKSLYTAPCLLTF TLG MKASGSLSSSQDQ RYLLEASGPG
Sbjct: 1221 GAPLLSWLKSLYTAPCLLTFTTLGAMKASGSLSSSQDQETRRTASGRERRRYLLEASGPG 1280
Query: 3182 AVEAKAQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCYKV 3003
AVEAKAQDVE+ELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLEL SGCYKV
Sbjct: 1281 AVEAKAQDVETELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELHSGCYKV 1340
Query: 3002 GSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKLEKWLLSSHDPFMAGSGW 2823
GSLTKTFPFTVNRK+CRFQRLGLKDLVI+DFPPTFVSFPVLKLEKWLLSSHDPFMAGSGW
Sbjct: 1341 GSLTKTFPFTVNRKHCRFQRLGLKDLVIIDFPPTFVSFPVLKLEKWLLSSHDPFMAGSGW 1400
Query: 2822 FMEMLFRGNGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTICDDTGTGYRNDF 2643
FMEMLF+ NGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTICDDTGTGYRNDF
Sbjct: 1401 FMEMLFQKNGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTICDDTGTGYRNDF 1460
Query: 2642 FYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITKEEYLEASLLLG 2463
FYVSQCGTPLVANYG+GKGLKIASIHVVHHFSAT+KDTIIAGSGSLITKEEYLEASLLLG
Sbjct: 1461 FYVSQCGTPLVANYGKGKGLKIASIHVVHHFSATEKDTIIAGSGSLITKEEYLEASLLLG 1520
Query: 2462 EIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSGAPRQATTSEIKKSSISADLEAL 2283
EIKHPLETDRIQASGCLSGEEFFDAETVFPEGLL+PS APRQAT+SEIKKSSISADLE L
Sbjct: 1521 EIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLQPSDAPRQATSSEIKKSSISADLEML 1580
Query: 2282 TGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAVAADMSPVTEEEEKIWDLTWDSIF 2103
TGEKRKTEPAIIHNRDTRLHDRHLDIFKKGM+KYKAVAADMSPVTE+EEKIW+LTWDSIF
Sbjct: 1581 TGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMMKYKAVAADMSPVTEDEEKIWNLTWDSIF 1640
Query: 2102 DLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLP 1923
DLPGGI KCHLLSEDENLNGVNGDNEYRGMVV+TSEGWPEVLNRKNGEAGKERFLLGLP
Sbjct: 1641 DLPGGIASKCHLLSEDENLNGVNGDNEYRGMVVTTSEGWPEVLNRKNGEAGKERFLLGLP 1700
Query: 1922 GCYTLNRDLPMYQRILDMDELCATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPME 1743
GCYTLNRDLPMYQRI+DMDELC TTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPME
Sbjct: 1701 GCYTLNRDLPMYQRIVDMDELCKTTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPME 1760
Query: 1742 YNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDG 1563
YNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGD SRFDG
Sbjct: 1761 YNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDSSRFDG 1820
Query: 1562 VTPRCLLIEIARRITLLYNDDQGDRRLHLMLAATTRLGVAGIGLYRVSGGIPSGFALTVI 1383
VTPRCLL+EI+RRITLLY DDQGDRRLHLMLAATTRLGVAGIGLYRVSGGIPSGFALTVI
Sbjct: 1821 VTPRCLLVEISRRITLLYGDDQGDRRLHLMLAATTRLGVAGIGLYRVSGGIPSGFALTVI 1880
Query: 1382 VNSLVNHFLVRWSWEHMMASSSLFFSDCVELAVVGDDNLVSVKEIAASEFNLKKLSSFLA 1203
VNSLVNHFLVRWSWEHMMASSSLFFSDCVELAVVGDDNLVSVK+IAA++FNLKKLSSFLA
Sbjct: 1881 VNSLVNHFLVRWSWEHMMASSSLFFSDCVELAVVGDDNLVSVKQIAAADFNLKKLSSFLA 1940
Query: 1202 DFGFTLKDGSDKSKEILPEFNPPEKCDFLKRCFKARGDRYLAPXXXXXXXXXLHWVRETN 1023
FGFTLKDGSDK+KEILPEFNPPEKCDFLKRCFKARGDRYLAP LHWVRETN
Sbjct: 1941 GFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCFKARGDRYLAPLSWLSLSESLHWVRETN 2000
Query: 1022 MSNAVATQNNVEGFLRELFHYGDKELYCKWRRDLIDLCSKNRVPHPTTYSFEELERSWLS 843
MSN+ ATQNNVEGFLRELFHYGDKELYCKWRRDLIDLCSKNRVPHPTTYSFEELERSWLS
Sbjct: 2001 MSNSAATQNNVEGFLRELFHYGDKELYCKWRRDLIDLCSKNRVPHPTTYSFEELERSWLS 2060
Query: 842 GKSVASIFEKEESEVVVIRDGASDVAPGVHIVPVQQCLKWKTGEVPNVVWCGPNCPNQLR 663
GK+VASIFEKEE EV+VIRDGASD+AP VHI+PVQQCLKW++ EVPNVVWCGPNCPNQL+
Sbjct: 2061 GKTVASIFEKEEPEVIVIRDGASDIAPDVHIIPVQQCLKWRSDEVPNVVWCGPNCPNQLK 2120
Query: 662 NANTCFQIQAPQGSRYPLRNTVRNLLKKVHQRGDEVYFTGALNQSLVHWVAAFYASMYRE 483
NA+TCFQIQAPQGS+YPLR+T+RN LKKVHQRGD+VYFTGA+NQSLVHWVAAFYASMYRE
Sbjct: 2121 NASTCFQIQAPQGSKYPLRSTIRNFLKKVHQRGDKVYFTGAINQSLVHWVAAFYASMYRE 2180
Query: 482 SFHHSTYMKAYFGDNDAGLLESTVAAKGW 396
SFHHS YMKAYFGDNDAGLLEST+AAKGW
Sbjct: 2181 SFHHSAYMKAYFGDNDAGLLESTIAAKGW 2209
>ref|YP_227367.1| 250 kDa polyprotein [Strawberry latent ringspot virus]
gi|58040997|gb|AAW63128.1| 250 kDa polyprotein
[Strawberry latent ringspot virus]
Length = 2227
Score = 2192 bits (5679), Expect = 0.0
Identities = 1065/1229 (86%), Positives = 1134/1229 (92%)
Frame = -1
Query: 4082 KAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDDRFQVMNYEQFLQYTVNQSKQ 3903
KAFENRRLILAEVTAVEGGRYRDRYRFT+HQKNEPY+RDDRFQVMNY+QF+QY VNQSK
Sbjct: 999 KAFENRRLILAEVTAVEGGRYRDRYRFTIHQKNEPYARDDRFQVMNYDQFMQYVVNQSKD 1058
Query: 3902 HFSEQVDLRDAPHTQVFTAADQIAAEAEEGFRVAGIKVPFTMLKSLSGDQLTYYSEERMM 3723
HFSEQVDLRDAPHTQ+F AADQIAAEAEEGF+ AGI +PF MLK + G +TYY EE+
Sbjct: 1059 HFSEQVDLRDAPHTQIFAAADQIAAEAEEGFKTAGITIPFCMLKCIEGRMVTYYDEEKFT 1118
Query: 3722 EVTETLTPEDADIIRSRLDPGIITQQLQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCS 3543
E+T L+ DADII SRLDP +ITQ+LQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCS
Sbjct: 1119 EMTVELSETDADIIHSRLDPQMITQRLQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCS 1178
Query: 3542 QRAKVIGRFLRPKVTEEQLEQHKRGFATMAKELAQGACKAINDAPFLVKLLLGFGALYFV 3363
QRAKVIGRFL+PKVTE QLE KRGF + KELAQGAC+AI+DAPFLVKLLLGFGALYFV
Sbjct: 1179 QRAKVIGRFLKPKVTEAQLETSKRGFLQVTKELAQGACRAISDAPFLVKLLLGFGALYFV 1238
Query: 3362 GLPLLSWLKSLYTAPCLLTFATLGTMKASGSLSSSQDQXXXXXXXXXXXXRYLLEASGPG 3183
GLP+L WLKSLY+AP L+TFA LGTM+ASGSLSSSQDQ RYLLEASGPG
Sbjct: 1239 GLPILGWLKSLYSAPSLMTFAALGTMRASGSLSSSQDQETRRTASGRERRRYLLEASGPG 1298
Query: 3182 AVEAKAQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCYKV 3003
A+EAK QDVE+ELASLSKHL+GFTSID+PDHHYRGIALGGTRVLMVYHVWLEL SGCYKV
Sbjct: 1299 ALEAKPQDVETELASLSKHLVGFTSIDFPDHHYRGIALGGTRVLMVYHVWLELHSGCYKV 1358
Query: 3002 GSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKLEKWLLSSHDPFMAGSGW 2823
GSL+KTFPFTVNRKNC+FQR+GLKDLVIVDFPPTFVSFPVLKLEKWLL+SHDPFMAGSGW
Sbjct: 1359 GSLSKTFPFTVNRKNCKFQRIGLKDLVIVDFPPTFVSFPVLKLEKWLLASHDPFMAGSGW 1418
Query: 2822 FMEMLFRGNGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTICDDTGTGYRNDF 2643
FMEM+F+ NGVLEVAREEADYTLLDT+DVYDAAFLKGVGLNKCVRYTICDD GTGYRNDF
Sbjct: 1419 FMEMVFQRNGVLEVAREEADYTLLDTHDVYDAAFLKGVGLNKCVRYTICDDAGTGYRNDF 1478
Query: 2642 FYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITKEEYLEASLLLG 2463
FYVSQCGTPLVANYG+GKGLKIASIHVVHHFSAT+KDTIIAGSGSL+TKEEYLEASLLLG
Sbjct: 1479 FYVSQCGTPLVANYGKGKGLKIASIHVVHHFSATEKDTIIAGSGSLLTKEEYLEASLLLG 1538
Query: 2462 EIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSGAPRQATTSEIKKSSISADLEAL 2283
+IKHPLETDRIQASGCLSG+EFFDAETVFPEGLL PS APRQAT+SEI KSSIS LE L
Sbjct: 1539 DIKHPLETDRIQASGCLSGDEFFDAETVFPEGLLLPSQAPRQATSSEIHKSSISDGLEKL 1598
Query: 2282 TGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAVAADMSPVTEEEEKIWDLTWDSIF 2103
GEKRKTEPAII NRDTRL DR+LDIFKKGM+KYKAVAADMSPVT+EEEKIW++TWDSIF
Sbjct: 1599 VGEKRKTEPAIISNRDTRLKDRNLDIFKKGMMKYKAVAADMSPVTDEEEKIWNVTWDSIF 1658
Query: 2102 DLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLP 1923
DLPGGI+ KCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLP
Sbjct: 1659 DLPGGIQSKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLP 1718
Query: 1922 GCYTLNRDLPMYQRILDMDELCATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPME 1743
GCYTLNR+LPMYQRILD+D L ATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPME
Sbjct: 1719 GCYTLNRNLPMYQRILDLDALSATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPME 1778
Query: 1742 YNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDG 1563
YNYLVRKYFGSFVAELMKLHN IPTKVGINPLGYDWTILGK+MHAKGTNWFNGDYSRFDG
Sbjct: 1779 YNYLVRKYFGSFVAELMKLHNCIPTKVGINPLGYDWTILGKKMHAKGTNWFNGDYSRFDG 1838
Query: 1562 VTPRCLLIEIARRITLLYNDDQGDRRLHLMLAATTRLGVAGIGLYRVSGGIPSGFALTVI 1383
VTPRCLLIEI+ RIT LY D+ +RRLHLMLAATTRLGVAGIGLYRVSGGIP GFALTVI
Sbjct: 1839 VTPRCLLIEISNRITKLYGDEHRERRLHLMLAATTRLGVAGIGLYRVSGGIPPGFALTVI 1898
Query: 1382 VNSLVNHFLVRWSWEHMMASSSLFFSDCVELAVVGDDNLVSVKEIAASEFNLKKLSSFLA 1203
VNSLVNHFLVRWSWEHMMASSSLFF+DCVELAVVGDDNLVSVK++AA +FNLKKLS+FLA
Sbjct: 1899 VNSLVNHFLVRWSWEHMMASSSLFFTDCVELAVVGDDNLVSVKQVAAEDFNLKKLSAFLA 1958
Query: 1202 DFGFTLKDGSDKSKEILPEFNPPEKCDFLKRCFKARGDRYLAPXXXXXXXXXLHWVRETN 1023
FGFTLKDGSDK+KEILPEFNPPEKCDFLKRCFKARGDRYLAP LHWVRETN
Sbjct: 1959 GFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCFKARGDRYLAPLSWLSLSESLHWVRETN 2018
Query: 1022 MSNAVATQNNVEGFLRELFHYGDKELYCKWRRDLIDLCSKNRVPHPTTYSFEELERSWLS 843
M+NA ATQNNVEGFLRELFHYGDKELYCKWRRDLI LC++NRVPHPT+YSFEELERSWLS
Sbjct: 2019 MTNAAATQNNVEGFLRELFHYGDKELYCKWRRDLISLCAENRVPHPTSYSFEELERSWLS 2078
Query: 842 GKSVASIFEKEESEVVVIRDGASDVAPGVHIVPVQQCLKWKTGEVPNVVWCGPNCPNQLR 663
GK+VASIFEKEE E+VV++D ASDVAP VHIVP Q CLKWK EVP VVWCGPNCPNQLR
Sbjct: 2079 GKTVASIFEKEEPEIVVLKDAASDVAPNVHIVPAQTCLKWKPNEVPTVVWCGPNCPNQLR 2138
Query: 662 NANTCFQIQAPQGSRYPLRNTVRNLLKKVHQRGDEVYFTGALNQSLVHWVAAFYASMYRE 483
NAN CF IQAPQGSRYPLR+TVRN LK+VHQR DEVYF GAL+QSLVHWVAAFYASMYRE
Sbjct: 2139 NANGCFLIQAPQGSRYPLRSTVRNSLKRVHQRSDEVYFAGALDQSLVHWVAAFYASMYRE 2198
Query: 482 SFHHSTYMKAYFGDNDAGLLESTVAAKGW 396
SF HS YM AYFGDND GLLE+ AAKGW
Sbjct: 2199 SFSHSKYMAAYFGDNDKGLLEAVTAAKGW 2227
>ref|YP_227373.1| polymerase [Strawberry latent ringspot virus]
Length = 675
Score = 1226 bits (3171), Expect = 0.0
Identities = 592/675 (87%), Positives = 624/675 (92%)
Frame = -1
Query: 2420 GCLSGEEFFDAETVFPEGLLEPSGAPRQATTSEIKKSSISADLEALTGEKRKTEPAIIHN 2241
GCLSG+EFFDAETVFPEGLL PS APRQAT+SEI KSSIS LE L GEKRKTEPAII N
Sbjct: 1 GCLSGDEFFDAETVFPEGLLLPSQAPRQATSSEIHKSSISDGLEKLVGEKRKTEPAIISN 60
Query: 2240 RDTRLHDRHLDIFKKGMLKYKAVAADMSPVTEEEEKIWDLTWDSIFDLPGGIERKCHLLS 2061
RDTRL DR+LDIFKKGM+KYKAVAADMSPVT+EEEKIW++TWDSIFDLPGGI+ KCHLLS
Sbjct: 61 RDTRLKDRNLDIFKKGMMKYKAVAADMSPVTDEEEKIWNVTWDSIFDLPGGIQSKCHLLS 120
Query: 2060 EDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQR 1881
EDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNR+LPMYQR
Sbjct: 121 EDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRNLPMYQR 180
Query: 1880 ILDMDELCATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVA 1701
ILD+D L ATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVA
Sbjct: 181 ILDLDALSATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVA 240
Query: 1700 ELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRI 1521
ELMKLHN IPTKVGINPLGYDWTILGK+MHAKGTNWFNGDYSRFDGVTPRCLLIEI+ RI
Sbjct: 241 ELMKLHNCIPTKVGINPLGYDWTILGKKMHAKGTNWFNGDYSRFDGVTPRCLLIEISNRI 300
Query: 1520 TLLYNDDQGDRRLHLMLAATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSW 1341
T LY D+ +RRLHLMLAATTRLGVAGIGLYRVSGGIP GFALTVIVNSLVNHFLVRWSW
Sbjct: 301 TKLYGDEHRERRLHLMLAATTRLGVAGIGLYRVSGGIPPGFALTVIVNSLVNHFLVRWSW 360
Query: 1340 EHMMASSSLFFSDCVELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSK 1161
EHMMASSSLFF+DCVELAVVGDDNLVSVK++AA +FNLKKLS+FLA FGFTLKDGSDK+K
Sbjct: 361 EHMMASSSLFFTDCVELAVVGDDNLVSVKQVAAEDFNLKKLSAFLAGFGFTLKDGSDKNK 420
Query: 1160 EILPEFNPPEKCDFLKRCFKARGDRYLAPXXXXXXXXXLHWVRETNMSNAVATQNNVEGF 981
EILPEFNPPEKCDFLKRCFKARGDRYLAP LHWVRETNM+NA ATQNNVEGF
Sbjct: 421 EILPEFNPPEKCDFLKRCFKARGDRYLAPLSWLSLSESLHWVRETNMTNAAATQNNVEGF 480
Query: 980 LRELFHYGDKELYCKWRRDLIDLCSKNRVPHPTTYSFEELERSWLSGKSVASIFEKEESE 801
LRELFHYGDKELYCKWRRDLI LC++NRVPHPT+YSFEELERSWLSGK+VASIFEKEE E
Sbjct: 481 LRELFHYGDKELYCKWRRDLISLCAENRVPHPTSYSFEELERSWLSGKTVASIFEKEEPE 540
Query: 800 VVVIRDGASDVAPGVHIVPVQQCLKWKTGEVPNVVWCGPNCPNQLRNANTCFQIQAPQGS 621
+VV++D ASDVAP VHIVP Q CLKWK EVP VVWCGPNCPNQLRNAN CF IQAPQGS
Sbjct: 541 IVVLKDAASDVAPNVHIVPAQTCLKWKPNEVPTVVWCGPNCPNQLRNANGCFLIQAPQGS 600
Query: 620 RYPLRNTVRNLLKKVHQRGDEVYFTGALNQSLVHWVAAFYASMYRESFHHSTYMKAYFGD 441
RYPLR+TVRN LK+VHQR DEVYF GAL+QSLVHWVAAFYASMYRESF HS YM AYFGD
Sbjct: 601 RYPLRSTVRNSLKRVHQRSDEVYFAGALDQSLVHWVAAFYASMYRESFSHSKYMAAYFGD 660
Query: 440 NDAGLLESTVAAKGW 396
ND GLLE+ AAKGW
Sbjct: 661 NDKGLLEAVTAAKGW 675
>ref|YP_227372.1| protease [Strawberry latent ringspot virus]
Length = 257
Score = 500 bits (1287), Expect = e-164
Identities = 238/257 (92%), Positives = 253/257 (98%)
Frame = -1
Query: 3191 GPGAVEAKAQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGC 3012
GPGA+EAK QDVE+ELASLSKHL+GFTSID+PDHHYRGIALGGTRVLMVYHVWLEL SGC
Sbjct: 1 GPGALEAKPQDVETELASLSKHLVGFTSIDFPDHHYRGIALGGTRVLMVYHVWLELHSGC 60
Query: 3011 YKVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKLEKWLLSSHDPFMAG 2832
YKVGSL+KTFPFTVNRKNC+FQR+GLKDLVIVDFPPTFVSFPVLKLEKWLL+SHDPFMAG
Sbjct: 61 YKVGSLSKTFPFTVNRKNCKFQRIGLKDLVIVDFPPTFVSFPVLKLEKWLLASHDPFMAG 120
Query: 2831 SGWFMEMLFRGNGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTICDDTGTGYR 2652
SGWFMEM+F+ NGVLEVAREEADYTLLDT+DVYDAAFLKGVGLNKCVRYTICDD GTGYR
Sbjct: 121 SGWFMEMVFQRNGVLEVAREEADYTLLDTHDVYDAAFLKGVGLNKCVRYTICDDAGTGYR 180
Query: 2651 NDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITKEEYLEASL 2472
NDFFYVSQCGTPLVANYG+GKGLKIASIHVVHHFSAT+KDTIIAGSGSL+TKEEYLEASL
Sbjct: 181 NDFFYVSQCGTPLVANYGKGKGLKIASIHVVHHFSATEKDTIIAGSGSLLTKEEYLEASL 240
Query: 2471 LLGEIKHPLETDRIQAS 2421
LLG+IKHPLETDRIQAS
Sbjct: 241 LLGDIKHPLETDRIQAS 257
>ref|YP_227370.1| helicase [Strawberry latent ringspot virus]
Length = 548
Score = 452 bits (1164), Expect = e-142
Identities = 219/269 (81%), Positives = 241/269 (89%)
Frame = -1
Query: 4082 KAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDDRFQVMNYEQFLQYTVNQSKQ 3903
KAFENRRLILAEVTAVEGGRYRDRYRFT+HQKNEPY+RDDRFQVMNY+QF+QY VNQSK
Sbjct: 280 KAFENRRLILAEVTAVEGGRYRDRYRFTIHQKNEPYARDDRFQVMNYDQFMQYVVNQSKD 339
Query: 3902 HFSEQVDLRDAPHTQVFTAADQIAAEAEEGFRVAGIKVPFTMLKSLSGDQLTYYSEERMM 3723
HFSEQVDLRDAPHTQ+F AADQIAAEAEEGF+ AGI +PF MLK + G +TYY EE+
Sbjct: 340 HFSEQVDLRDAPHTQIFAAADQIAAEAEEGFKTAGITIPFCMLKCIEGRMVTYYDEEKFT 399
Query: 3722 EVTETLTPEDADIIRSRLDPGIITQQLQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCS 3543
E+T L+ DADII SRLDP +ITQ+LQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCS
Sbjct: 400 EMTVELSETDADIIHSRLDPQMITQRLQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCS 459
Query: 3542 QRAKVIGRFLRPKVTEEQLEQHKRGFATMAKELAQGACKAINDAPFLVKLLLGFGALYFV 3363
QRAKVIGRFL+PKVTE QLE KRGF + KELAQGAC+AI+DAPFLVKLLLGFGALYFV
Sbjct: 460 QRAKVIGRFLKPKVTEAQLETSKRGFLQVTKELAQGACRAISDAPFLVKLLLGFGALYFV 519
Query: 3362 GLPLLSWLKSLYTAPCLLTFATLGTMKAS 3276
GLP+L WLKSLY+AP L+TFA LGTM+AS
Sbjct: 520 GLPILGWLKSLYSAPSLMTFAALGTMRAS 548
>gb|AAZ76594.1| polyprotein, partial [Stocky prune virus]
Length = 795
Score = 321 bits (823), Expect = 1e-90
Identities = 220/609 (36%), Positives = 318/609 (52%), Gaps = 31/609 (5%)
Frame = -1
Query: 2651 NDFFYVSQCGTPLVANYG---RGKGLKIASIHVVHHFSATQKDTIIA-GSGSLITKEEYL 2484
+ + CG A G G G+ + ++H + ++ + G G+ +T+E+ +
Sbjct: 22 HSYMISGDCGVISFAPGGSTLEGSGVVPPKVCIMHDSNKMRQSVDLQLGHGAFLTQEDLI 81
Query: 2483 EASLLLGEIKHPLETDRIQASGCLSGEE----FFDAETVFPEGLLEP-SGAPRQATTSEI 2319
+LL D + CL E + V G L+ S AP + +++
Sbjct: 82 GYEVLL---------DCVATGSCLPEVEPIINGLSCDNVVCMGRLKKVSDAPHYSKKTQL 132
Query: 2318 KKSSISADLEALTGEKRKTEPAIIHNRDTRLH---DRHLDIFKKGMLKYKAVAADMSPVT 2148
++S IS D+ L E T PAII N D R+ + D+F GM KYK +A V
Sbjct: 133 ERSLIS-DIVDLPCE---TVPAIISNEDPRIAVSCNPDFDVFVNGMEKYKKMAGPFEGVE 188
Query: 2147 -EEEEKIWDLTWDSIFDLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLN 1971
+E++ + D IFD +SE+ L G+ + +V STSEG+P +L
Sbjct: 189 GSDEQQDFHDALDDIFDCLNIESESLEEVSEEVALRGLPDVEYFDPIVASTSEGYPWILE 248
Query: 1970 RKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMD-ELCATTIPCIVGLDTAKDERLPLS 1794
R +G GK L G+PGC++++ + +++ L +P ++G++ KDER+
Sbjct: 249 RPSGCKGKAWLLEGVPGCFSVDPSSKFGKAKRELELNLQQGVVPPLIGVECPKDERVARK 308
Query: 1793 KIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRM 1614
K+ KTRLFT+LP EYN LVR+YF FV++ M+ HN P KVGINP +WT L + +
Sbjct: 309 KVTTKPKTRLFTVLPFEYNLLVREYFMDFVSKYMQRHNECPGKVGINPQSIEWTNLYENL 368
Query: 1613 HAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQGDR------RLHLMLAATTRL 1452
+KGTNWFNGD+ RFDG+TPR +++++ RI LY DR R LML A+ R
Sbjct: 369 RSKGTNWFNGDFERFDGITPRDVMVQLVIRINKLYKRGDADRPLANKVRSLLMLMASDRY 428
Query: 1451 GVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASS-------SLFFSDCVE 1293
+AG LY+VS GIPSGF+LTVIVNSLVN F +R++W+ ++ +S V
Sbjct: 429 AIAGRNLYKVSCGIPSGFSLTVIVNSLVNEFFLRFAWKRIVRASLGEAFVHRSIMDREVH 488
Query: 1292 LAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNP-PEKCDFL 1116
AV GDDNLVSV + +S +NL +SSFL + G LK+G K +E P F+P P CDFL
Sbjct: 489 FAVYGDDNLVSVSDKYSSLYNLVSISSFLRERGVVLKNGQCKDEEDFPPFSPSPSTCDFL 548
Query: 1115 KRCF-KARGDRYLAPXXXXXXXXXLHWVRETNMSNAVATQNNVEGFLRE--LFHYGDKEL 945
KR F R LAP HWVR++ Q NV+G LRE F E
Sbjct: 549 KRRFVLGSSGRVLAPLDKSSLLGCAHWVRKSQDPGEAIVQ-NVQGILRECVAFEENSYEF 607
Query: 944 YCKWRRDLI 918
+ RR L+
Sbjct: 608 FHDMRRKLL 616
>ref|YP_009220374.1| polyprotein [Currant latent virus] gi|966557892|gb|ALT45950.1|
polyprotein [Currant latent virus]
Length = 2124
Score = 335 bits (858), Expect = 2e-90
Identities = 281/828 (33%), Positives = 402/828 (48%), Gaps = 46/828 (5%)
Frame = -1
Query: 3161 DVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCYKVG--SLTK 2988
+++ + +L KH + F + D Y IALGG L+ HV+ + Y + ++TK
Sbjct: 1203 ELDQSVINLLKHQVVFIN-DMTKVVYNAIALGGRNFLITKHVFDLMPVANYSLYGYAITK 1261
Query: 2987 TFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKLEKWLLSSHDPFMAGSGWFM--E 2814
+ NR + Q L +DLVIV+ P T F L + +L + + + + E
Sbjct: 1262 PKIWIDNRVRPKIQ-LKDRDLVIVEMPLTVPCFSSLPKDIFLKNMQEAPKQVNAVLVIAE 1320
Query: 2813 MLFRGNGVLEVAREEADYTLLD---TNDVYDAAFLKGVGLNKCVRYTICDDTGTGYRNDF 2643
+ G V ++ ++ +T L D Y L + + C YT DT
Sbjct: 1321 PNYEGKSVAKLVQKFQPFTNLPQVHAKDTYSCGSLGSLRMPPCYSYTF--DT-------- 1370
Query: 2642 FYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITKEEYLEASLLLG 2463
Y C +PL+ G G+ + + +HVV + S T G ++T +++ E L
Sbjct: 1371 -YPGLCTSPLICMSG-GRCI-LLGLHVVGNMSKT-------GFSQIVTLDDFSEVPL--- 1417
Query: 2462 EIKHPLETDRIQASGCLSGE--EFFDAETVFPE--GLLEPSG-----APRQATTSEIKKS 2310
SG L GE E + T E G + G AP + + S
Sbjct: 1418 ------------QSGTLVGEGPECYCIPTASSECYGSVTKLGKWTGPAPYFLEKTSLVPS 1465
Query: 2309 SISADLEALTGEKRKTEPAIIHNRDTRL---HDRHLDIFKKGMLKYKAVAADMSPVTEEE 2139
IS D++ + TEPAI+ +D RL +D + FK GMLKY A + E+
Sbjct: 1466 MISKDIDI----EMTTEPAILTTKDPRLAHSNDPDFNPFKAGMLKYAVEAHGFN----ED 1517
Query: 2138 EKIWDLTWDSIF-DLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKN 1962
E+ ++ D +F ++P + C L++DE NG+ D +V+ TSEG+P R
Sbjct: 1518 EEFFEDALDRVFSEIP---DFNCQELADDEVCNGIEDDPYAEPLVMQTSEGYPFCTQRPA 1574
Query: 1961 GEAGKERFLLGLPGCYTLNRDLPMYQRILDMDE-LCATTIPCIVGLDTAKDERLPLSKIY 1785
G GK G PG + + ++ + M+ L ++G+D KDE++ SK+Y
Sbjct: 1575 GATGKSWLFCGSPGDWHILPGSLLHNEMNKMERNLSQGIFEPVIGIDFPKDEKVDKSKVY 1634
Query: 1784 QDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAK 1605
KTRLFTILP+ YN LVRKYF SFV++LM LHN PTKVGINPL +W IL + AK
Sbjct: 1635 IKPKTRLFTILPVHYNILVRKYFLSFVSQLMALHNETPTKVGINPLSNEWGILQFALSAK 1694
Query: 1604 GTNWFNGDYSRFDGVTPRCLLIEIARRI---------------TLLYNDDQGDRRLHLML 1470
G NWFNGDYSRFDG+TPR +L+ I +RI TL N D R LM
Sbjct: 1695 GENWFNGDYSRFDGITPRSVLLGIVKRISNRFVNKNSLAITDKTLSINGDLA--RSLLMD 1752
Query: 1469 AATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASSS-------LF 1311
A+TR G+ L+ V+ GIPSGF LTVIVNSLVN F + +++ + S+
Sbjct: 1753 MASTRYGLTQGDLWYVNSGIPSGFPLTVIVNSLVNSFFIHYAYMSICKKSNDMDLYPLYS 1812
Query: 1310 FSDCVELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPE 1131
F V AV GDDN+VSV ++ +FNL L+ FL D+G TLK+G+DK +EIL F P
Sbjct: 1813 FKQLVSYAVYGDDNIVSVNDLIKDKFNLVILADFLKDYGVTLKNGADKDEEILSPFYPIS 1872
Query: 1130 KCDFLKRCFKARGDRYLAPXXXXXXXXXLHWVRETNMSNAVATQNNVEGFLRELFHYGDK 951
K DFLKR F ++P LHWVR+ M+ A N + E +G
Sbjct: 1873 KVDFLKRKFTVLQGHVVSPLNRINITERLHWVRK-GMTEVDAIVENCQSAAFEAVFHG-- 1929
Query: 950 ELYCKWRRDLI-DLCSKN--RVPHPTTYSFEELERSWLSGKSVASIFE 816
E Y K +I C+KN V PT F++ LSG S A+ +
Sbjct: 1930 EHYYKDICGVIKKACTKNGITVDLPT---FQDALNIHLSGGSFATAIQ 1974
>gb|AHN52254.1| polyprotein, partial [Currant latent virus]
Length = 721
Score = 306 bits (783), Expect = 7e-86
Identities = 212/541 (39%), Positives = 288/541 (53%), Gaps = 30/541 (5%)
Frame = -1
Query: 2348 APRQATTSEIKKSSISADLEALTGEKRKTEPAIIHNRDTRL---HDRHLDIFKKGMLKYK 2178
AP + + S IS D++ + TEPAI+ +D RL +D + FK GMLKY
Sbjct: 50 APYFLEKTSLVPSMISKDIDI----EMTTEPAILTTKDPRLAHSNDPDFNPFKAGMLKYA 105
Query: 2177 AVAADMSPVTEEEEKIWDLTWDSIF-DLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVS 2001
A + E+E+ ++ D +F ++P + C L++DE NG+ D +V+
Sbjct: 106 VEAHGFN----EDEEFFEDALDRVFSEIP---DFNCQELADDEVCNGIEDDPYAEPLVMQ 158
Query: 2000 TSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDE-LCATTIPCIVGLD 1824
TSEG+P R G GK G PG + + ++ + M+ L ++G+D
Sbjct: 159 TSEGYPFCTQRPAGATGKSWLFCGSPGDWHILPGSLLHNEMNKMERNLSQGIFEPVIGID 218
Query: 1823 TAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLG 1644
KDE++ SK+Y KTRLFTILP+ YN LVRKYF SFV++LM LHN PTKVGINPL
Sbjct: 219 FPKDEKVDKSKVYIKPKTRLFTILPVHYNILVRKYFLSFVSQLMALHNETPTKVGINPLS 278
Query: 1643 YDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRI---------------TLLY 1509
+W IL + AKG NWFNGDYSRFDG+TPR +L+ I +RI TL
Sbjct: 279 NEWGILQFALSAKGENWFNGDYSRFDGITPRSVLLGIVKRISNRFVNKNSLAITDKTLSI 338
Query: 1508 NDDQGDRRLHLMLAATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMM 1329
N D R LM A+TR G+ L+ V+ GIPSGF LTVIVNSLVN F + +++ +
Sbjct: 339 NGDLA--RSLLMDMASTRYGLTQGDLWYVNSGIPSGFPLTVIVNSLVNSFFIHYAYRSIC 396
Query: 1328 ASSS-------LFFSDCVELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSD 1170
S+ F V AV GDDN+VSV ++ +FNL L+ FL D+G TLK+G+D
Sbjct: 397 KKSNDMDLYPLYSFKQLVSYAVYGDDNIVSVNDLIKDKFNLVILADFLKDYGVTLKNGAD 456
Query: 1169 KSKEILPEFNPPEKCDFLKRCFKARGDRYLAPXXXXXXXXXLHWVRETNMSNAVATQNNV 990
K +EIL F P K DFLKR F ++P LHWVR+ M+ A N
Sbjct: 457 KDEEILSPFYPISKVDFLKRKFTVLQGHVVSPLNRINITERLHWVRK-GMTEVDAIVENC 515
Query: 989 EGFLRELFHYGDKELYCKWRRDLI-DLCSKN--RVPHPTTYSFEELERSWLSGKSVASIF 819
+ E +G E Y K +I C+KN V PT F++ LSG S A+
Sbjct: 516 QSAAFEAVFHG--EHYYKDICGVIKKACTKNGITVDLPT---FQDALNIHLSGGSFATAI 570
Query: 818 E 816
+
Sbjct: 571 Q 571
>ref|NP_734022.1| RNA-dependent RNA polymerase [Apple latent spherical virus]
Length = 709
Score = 303 bits (775), Expect = 6e-85
Identities = 200/509 (39%), Positives = 283/509 (55%), Gaps = 26/509 (5%)
Frame = -1
Query: 2264 TEPAIIHNRDTRL---HDRHLDIFKKGMLKYKAVAADMSPVTEEEEKIWDLTWDSIF-DL 2097
TEPAI+ +D RL +++ D F GM KY A +E+E++++ D +F ++
Sbjct: 52 TEPAILSKKDPRLQYTNNKDFDPFLSGMGKYAVEAHSF----DEDEELFEDALDRVFSEI 107
Query: 2096 PGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGC 1917
P C LS D+ NG+ D+ G+V+ T+EG+P R G GK G PG
Sbjct: 108 P---MFTCEDLSNDQVCNGIEDDDYAEGLVMQTAEGYPFCTMRPPGVTGKTWLFAGSPGD 164
Query: 1916 YTL--NRDLPMYQRILDMDELCATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPME 1743
+ + N L + +++ L ++G+D KDE++ SK+Y KTRLFTILP++
Sbjct: 165 WHIVPNSLLANELNVKELN-LSKNIFEPVIGIDFPKDEKVDSSKVYIKQKTRLFTILPVD 223
Query: 1742 YNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDG 1563
YN LVRKYF SFV++LM LHN +PTKVGI+P+ +W+IL +H+KGTNWFNGDYSRFDG
Sbjct: 224 YNILVRKYFLSFVSQLMALHNEVPTKVGIDPISNEWSILCHSLHSKGTNWFNGDYSRFDG 283
Query: 1562 VTPRCLLIEIARRITLLYNDD------------QGD-RRLHLMLAATTRLGVAGIGLYRV 1422
+TPR +L I +RI+ Y + GD R LM +TR G+ L+ V
Sbjct: 284 ITPRNVLQGIVKRISRRYANKSSFAITDPTLSINGDLARSLLMDMCSTRYGLTNGDLWYV 343
Query: 1421 SGGIPSGFALTVIVNSLVNHFLVRWSWEHMMAS---SSLF----FSDCVELAVVGDDNLV 1263
+ GIPSGF LTVIVNSLVN F V +++ + +S +L+ F V AV GDDNL+
Sbjct: 344 TSGIPSGFPLTVIVNSLVNSFFVHFAYMKLHSSEVHKALYPLYSFRTLVSYAVYGDDNLI 403
Query: 1262 SVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFLKRCFKARGDRY 1083
SV + FNL +S+ L + G TLK+G+DK++EIL F P EK DFLKR F
Sbjct: 404 SVHDTIKDTFNLVTISNLLLEHGVTLKNGADKNEEILSPFYPIEKVDFLKRRFTTLQGHI 463
Query: 1082 LAPXXXXXXXXXLHWVRETNMSNAVATQNNVEGFLRELFHYGDKELYCKWRRDLIDLCSK 903
+AP LHWVR+ + +A AT N + L E +G ELY R I+ K
Sbjct: 464 VAPLNTVNITERLHWVRK-GLGDADATLENCKSALFEALFHG--ELYYNDLRGKIEKACK 520
Query: 902 NRVPHPTTYSFEELERSWLSGKSVASIFE 816
+ +++ +L+G S A +
Sbjct: 521 VKGLPLIVPDYQDALSLFLTGGSYAKAIQ 549
>ref|NP_620568.1| 235K polyprotein [Apple latent spherical virus]
gi|7007468|dbj|BAA90870.1| 235K polyprotein [Apple latent
spherical virus]
Length = 2079
Score = 313 bits (803), Expect = 1e-83
Identities = 263/820 (32%), Positives = 398/820 (48%), Gaps = 38/820 (4%)
Frame = -1
Query: 3161 DVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCYKV-GSLTKT 2985
D + +L KH + + ++ Y IALG L HVW + + Y + G
Sbjct: 1150 DQNQNVLNLLKHQVVLIA-EHSKVVYNAIALGNRNFLFTKHVWDLMPTCNYGLFGYAIAK 1208
Query: 2984 FPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKLEKWLLS-SHDPFMAGSGWFM-EM 2811
+N +L +DLV+V P + F L + +L + + P +A + + E
Sbjct: 1209 NKIYINPNVRPAIQLKNRDLVVVQLPDSVPPFSALPKDIFLSNLAEAPKVANAALVVSEP 1268
Query: 2810 LFRGNGVLEVAREEADYTLL---DTNDVYDAAFLKGVGLNKCVRYTICDDTGTGYRNDFF 2640
L+ V ++ ++ + L + D Y L + C YT DT G
Sbjct: 1269 LYEKRSVAQLQQKIYPFENLPQIHSRDTYSCGSLGSKPMPACYSYTF--DTFAGL----- 1321
Query: 2639 YVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITKEEYLEASLL--- 2469
C +PL++ G G+ + + +HV D G ++T E++ + +
Sbjct: 1322 ----CTSPLISMDG-GRCV-LLGLHVA-------GDKSKMGYAQIVTLEDFSDINFSEKV 1368
Query: 2468 -LGEIKHPLETDRIQASG--CLSGEEFFDAETVFPEGLLEPSGAPRQATTSEIKKSSISA 2298
G + + T R ++ G CL G ++ + F E + T + I
Sbjct: 1369 GQGPEQMYIPTARSESFGSVCLLG-KWTGPKPYFLE---------NSSLTPSLIHDCIDI 1418
Query: 2297 DLEALTGEKRKTEPAIIHNRDTRL---HDRHLDIFKKGMLKYKAVAADMSPVTEEEEKIW 2127
D+ TEPAI+ +D RL +++ D F GM KY A +E+E+++
Sbjct: 1419 DM--------TTEPAILSKKDPRLQYTNNKDFDPFLSGMGKYAVEAHSF----DEDEELF 1466
Query: 2126 DLTWDSIF-DLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAG 1950
+ D +F ++P C LS D+ NG+ D+ G+V+ T+EG+P R G G
Sbjct: 1467 EDALDRVFSEIP---MFTCEDLSNDQVCNGIEDDDYAEGLVMQTAEGYPFCTMRPPGVTG 1523
Query: 1949 KERFLLGLPGCYTL--NRDLPMYQRILDMDELCATTIPCIVGLDTAKDERLPLSKIYQDV 1776
K G PG + + N L + +++ L ++G+D KDE++ SK+Y
Sbjct: 1524 KTWLFAGSPGDWHIVPNSLLANELNVKELN-LSKNIFEPVIGIDFPKDEKVDSSKVYIKQ 1582
Query: 1775 KTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTN 1596
KTRLFTILP++YN LVRKYF SFV++LM LHN +PTKVGI+P+ +W+IL +H+KGTN
Sbjct: 1583 KTRLFTILPVDYNILVRKYFLSFVSQLMALHNEVPTKVGIDPISNEWSILCHSLHSKGTN 1642
Query: 1595 WFNGDYSRFDGVTPRCLLIEIARRITLLYNDD------------QGD-RRLHLMLAATTR 1455
WFNGDYSRFDG+TPR +L I +RI+ Y + GD R LM +TR
Sbjct: 1643 WFNGDYSRFDGITPRNVLQGIVKRISRRYANKSSFAITDPTLSINGDLARSLLMDMCSTR 1702
Query: 1454 LGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMAS---SSLF----FSDCV 1296
G+ L+ V+ GIPSGF LTVIVNSLVN F V +++ + +S +L+ F V
Sbjct: 1703 YGLTNGDLWYVTSGIPSGFPLTVIVNSLVNSFFVHFAYMKLHSSEVHKALYPLYSFRTLV 1762
Query: 1295 ELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFL 1116
AV GDDNL+SV + FNL +S+ L + G TLK+G+DK++EIL F P EK DFL
Sbjct: 1763 SYAVYGDDNLISVHDTIKDTFNLVTISNLLLEHGVTLKNGADKNEEILSPFYPIEKVDFL 1822
Query: 1115 KRCFKARGDRYLAPXXXXXXXXXLHWVRETNMSNAVATQNNVEGFLRELFHYGDKELYCK 936
KR F +AP LHWVR+ + +A AT N + L E +G ELY
Sbjct: 1823 KRRFTTLQGHIVAPLNTVNITERLHWVRK-GLGDADATLENCKSALFEALFHG--ELYYN 1879
Query: 935 WRRDLIDLCSKNRVPHPTTYSFEELERSWLSGKSVASIFE 816
R I+ K + +++ +L+G S A +
Sbjct: 1880 DLRGKIEKACKVKGLPLIVPDYQDALSLFLTGGSYAKAIQ 1919
>gb|AAW92113.2| polyprotein [Cherry rasp leaf virus]
Length = 2235
Score = 312 bits (800), Expect = 3e-83
Identities = 250/772 (32%), Positives = 371/772 (48%), Gaps = 34/772 (4%)
Frame = -1
Query: 3176 EAKAQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCY--KV 3003
E ++ L +L KH + + + Y IALGG L+ HVW +L C
Sbjct: 1303 EGPEEEPSQSLLNLLKHQVVLIA-EPTKVVYNCIALGGRNFLITKHVW-DLMPACNYGLY 1360
Query: 3002 GSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKLEKWLLSSHDPFMAGSGW 2823
G + + +L +DLVIV P + F L + +L + +
Sbjct: 1361 GYAVAKDKIFIGPRIRPCAQLKGRDLVIVQLPDSVPPFTSLPRDIFLENMAKAPKTANAC 1420
Query: 2822 FM--EMLFRGNGVLEVAREEADYTLL---DTNDVYDAAFLKGVGLNKCVRYTICDDTGTG 2658
+ + LF V ++ + + L + D Y L + C Y +T
Sbjct: 1421 LVVAKPLFERRSVAKLEQTIYPFKQLPQVHSKDTYSCGSLGSKQMPACYSYVF--ET--- 1475
Query: 2657 YRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITKEEYLEA 2478
Y C +PL+A G G+ + I +HVV D G ++T +++ +
Sbjct: 1476 ------YAGLCTSPLIAQEG-GRCI-ILGLHVV-------GDRSKMGYAQIVTLDDFSDV 1520
Query: 2477 SLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSGAPRQATTSEIKKSSISA 2298
+L +D++ G E + + G + GA ++K+++
Sbjct: 1521 AL----------SDKV---GQGPEEMYIPTKNSECFGSVTKLGAWTGPKPYFLEKTTLIP 1567
Query: 2297 DLEALTGE-KRKTEPAIIHNRDTRLHDR---HLDIFKKGMLKYKAVAADMSPVTEEEEKI 2130
L + + + +R TEPAI+ RD RL D D+F +GM KY A + +E+ ++
Sbjct: 1568 SLISTSIDVERTTEPAILSQRDKRLKDSINPEFDVFLEGMKKYAVEAHSL----DEDLEV 1623
Query: 2129 WDLTWDSIF-DLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEA 1953
++ D +F ++P E C L+ D+ NG+ D G+V+ T+EG+P R G +
Sbjct: 1624 FEDALDRVFLEIP---EHACEDLTNDQVCNGIEDDPYAEGIVMQTAEGFPFCTQRPAGAS 1680
Query: 1952 GKERFLLGLPGCYTLNRDLPMYQRILDMD-ELCATTIPCIVGLDTAKDERLPLSKIYQDV 1776
GK G PG + + + + + L ++G+D KDE++ SK+Y
Sbjct: 1681 GKSWLFAGAPGDWHIVPGSLLANEMHKKEVALSRGLFEPLIGIDFPKDEKVDSSKVYIKP 1740
Query: 1775 KTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTN 1596
KTRLFTILP++YN LVRKYF SFV+ +M HN IP KVGI+ L +W+IL ++ +KGTN
Sbjct: 1741 KTRLFTILPVDYNILVRKYFLSFVSHIMTQHNTIPVKVGIDCLSNEWSILYHQLRSKGTN 1800
Query: 1595 WFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQG----DRRLH---------LMLAATTR 1455
WFNGDYSRFDG+TPR +L I +RI YN+ D L LM A+TR
Sbjct: 1801 WFNGDYSRFDGITPRNVLQGIVKRINKFYNNKNSLAITDSNLSINSDLARSLLMDMASTR 1860
Query: 1454 LGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSL-------FFSDCV 1296
G+ L+ V+ GIPSGF LTVIVNSLVN+F + +S+ +M L F V
Sbjct: 1861 YGLTNGDLWYVTSGIPSGFPLTVIVNSLVNNFFIHFSYIKLMKREELNSLYPLHSFRQMV 1920
Query: 1295 ELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFL 1116
A GDDNLVSV ++ FNL K++ LA+ G TLK+G+DK++EIL F P EK DFL
Sbjct: 1921 AYATYGDDNLVSVNDVITERFNLVKIADLLAEHGVTLKNGADKNEEILSPFYPLEKVDFL 1980
Query: 1115 KRCFKARGDRYLAPXXXXXXXXXLHWVRETNMSNAVATQNNVEGFLRE-LFH 963
KR F +AP LHW+R+ + A AT N E LFH
Sbjct: 1981 KRKFVHYQGHVVAPLNPVNITERLHWIRK-GLGEADATLENCSSAAFEALFH 2031
>ref|YP_081454.1| RNA-dependent RNA polymerase [Cherry rasp leaf virus]
Length = 707
Score = 296 bits (758), Expect = 1e-82
Identities = 189/478 (39%), Positives = 263/478 (55%), Gaps = 26/478 (5%)
Frame = -1
Query: 2318 KKSSISADLEALTGEKRKTEPAIIHNRDTRLHDR---HLDIFKKGMLKYKAVAADMSPVT 2148
K S I + + +R TEPAI+ RD RL D D+F +GM KY A +
Sbjct: 34 KTSLIPSLISTSIDVERTTEPAILSQRDKRLKDSINPEFDVFLEGMKKYAVEAHSL---- 89
Query: 2147 EEEEKIWDLTWDSIF-DLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLN 1971
+E+ ++++ D +F ++P E C L+ D+ NG+ D G+V+ T+EG+P
Sbjct: 90 DEDLEVFEDALDRVFLEIP---EHACEDLTNDQVCNGIEDDPYAEGIVMQTAEGFPFCTQ 146
Query: 1970 RKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTI-PCIVGLDTAKDERLPLS 1794
R G +GK G PG + + + + + + + ++G+D KDE++ S
Sbjct: 147 RPAGASGKSWLFAGAPGDWHIVPGSLLANEMHKKEVAPSRGLFEPLIGIDFPKDEKVDSS 206
Query: 1793 KIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRM 1614
K+Y KTRLFTILP++YN LVRKYF S V+ +M HN IP KVGI+ L +W+IL ++
Sbjct: 207 KVYIKPKTRLFTILPVDYNILVRKYFLSSVSHIMTQHNTIPVKVGIDCLSNEWSILYHQL 266
Query: 1613 HAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQG----DRRLH---------LM 1473
+KGTNWFNGDYSRFDG+TPR +L I +RI YN+ D L L
Sbjct: 267 RSKGTNWFNGDYSRFDGITPRNVLQGIVKRINKFYNNKNSLAITDSNLSINSDLARSLLT 326
Query: 1472 LAATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSL------- 1314
A+TR G+ L+ V+ GIPSGF LTVIVNSLVN+F + +S+ +M L
Sbjct: 327 DMASTRYGLTNGDLWYVTSGIPSGFPLTVIVNSLVNNFFIHFSYIKLMKREELNSLYPLH 386
Query: 1313 FFSDCVELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPP 1134
F V A GDDNLVSV ++ +FNL K++ LA+ G TLK+G+DK++EIL F P
Sbjct: 387 SFRQMVAYATYGDDNLVSVNDVITEKFNLVKIADLLAEHGVTLKNGADKNEEILSPFYPL 446
Query: 1133 EKCDFLKRCFKARGDRYLAPXXXXXXXXXLHWVRETNMSNAVATQNNVEGFLRE-LFH 963
EK DFLKR F +AP LHW+R+ + A AT N E LFH
Sbjct: 447 EKVDFLKRKFVHYQGHVVAPLNPVNITERLHWIRK-GLGEADATLENCSSAAFEALFH 503
>ref|YP_081444.1| polyprotein [Cherry rasp leaf virus]
gi|82002707|sp|Q6EWG9.1|POL1_CRLVP RecName: Full=RNA1
polyprotein; AltName: Full=Genome polyprotein B; AltName:
Full=P1; Contains: RecName: Full=Protease cofactor;
Contains: RecName: Full=Putative helicase; AltName:
Full=Membrane-binding protein; AltName: Full=NTP-binding
protein; Short=NTB; Contains: RecName: Full=Viral
genome-linked protein; AltName: Full=VPg; Contains:
RecName: Full=Picornain 3C-like protease; Short=3C-like
protease; Contains: RecName: Full=RNA-directed RNA
polymerase gi|50399319|emb|CAF21713.1| polyprotein
[Cherry rasp leaf virus]
Length = 2250
Score = 307 bits (787), Expect = 1e-81
Identities = 249/774 (32%), Positives = 372/774 (48%), Gaps = 36/774 (4%)
Frame = -1
Query: 3176 EAKAQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGC----Y 3009
E ++ L +L KH + + + Y IALGG L+ HVW +L C Y
Sbjct: 1318 EGPEEEPSQSLLNLLKHQVVLIA-EPTKVVYNCIALGGRNFLITKHVW-DLMPACNYGLY 1375
Query: 3008 KVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKLEKWLLSSHDPFMAGS 2829
+ + C +L +DLVIV P + F L + +L + +
Sbjct: 1376 GYAVAKDRIFISPRIRPCA--QLKGRDLVIVQLPDSVPPFTSLPRDIFLENMAKAPKTAN 1433
Query: 2828 GWFM--EMLFRGNGVLEVAREEADYTLLD---TNDVYDAAFLKGVGLNKCVRYTICDDTG 2664
+ + LF V ++ + + L + D Y L + C Y +T
Sbjct: 1434 ACLVVAKPLFERRSVAKLEQTIYPFKQLPQVHSKDTYSCGSLGSKQMPACYSYVF--ET- 1490
Query: 2663 TGYRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITKEEYL 2484
Y C +PL+A G G+ + I +HVV D G ++T +++
Sbjct: 1491 --------YAGLCTSPLIAQEG-GRCI-ILGLHVVG-------DRSKMGYAQIVTLDDFS 1533
Query: 2483 EASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSGAPRQATTSEIKKSSI 2304
+ +L +D++ G E + + G + GA ++K+S+
Sbjct: 1534 DVAL----------SDKV---GQGPEEMYIPTKNSECFGSVTKLGAWTGPKPYFLEKTSL 1580
Query: 2303 SADLEALTGE-KRKTEPAIIHNRDTRLHDR---HLDIFKKGMLKYKAVAADMSPVTEEEE 2136
L + + + +R TEPAI+ RD RL D D+F +GM KY A + +E+
Sbjct: 1581 IPSLISTSIDVERTTEPAILSQRDKRLKDSINPEFDVFLEGMKKYAVEAHSL----DEDL 1636
Query: 2135 KIWDLTWDSIF-DLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNG 1959
++++ D +F ++P E C L+ D+ NG+ D G+V+ T+EG+P R G
Sbjct: 1637 EVFEDALDRVFLEIP---EHACEDLTNDQVCNGIEDDPYAEGIVMQTAEGFPFCTQRPAG 1693
Query: 1958 EAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTI-PCIVGLDTAKDERLPLSKIYQ 1782
+GK G PG + + + + + + + ++G+D KDE++ SK+Y
Sbjct: 1694 ASGKSWLFAGAPGDWHIVPGSLLANEMHKKEVAPSRGLFEPLIGIDFPKDEKVDSSKVYI 1753
Query: 1781 DVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKG 1602
KTRLFTILP++YN LVRKYF S V+ +M HN IP KVGI+ L +W+IL ++ +KG
Sbjct: 1754 KPKTRLFTILPVDYNILVRKYFLSSVSHIMTQHNTIPVKVGIDCLSNEWSILYHQLRSKG 1813
Query: 1601 TNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQG----DRRLH---------LMLAAT 1461
TNWFNGDYSRFDG+TPR +L I +RI YN+ D L L A+
Sbjct: 1814 TNWFNGDYSRFDGITPRNVLQGIVKRINKFYNNKNSLAITDSNLSINSDLARSLLTDMAS 1873
Query: 1460 TRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSL-------FFSD 1302
TR G+ L+ V+ GIPSGF LTVIVNSLVN+F + +S+ +M L F
Sbjct: 1874 TRYGLTNGDLWYVTSGIPSGFPLTVIVNSLVNNFFIHFSYIKLMKREELNSLYPLHSFRQ 1933
Query: 1301 CVELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCD 1122
V A GDDNLVSV ++ +FNL K++ LA+ G TLK+G+DK++EIL F P EK D
Sbjct: 1934 MVAYATYGDDNLVSVNDVITEKFNLVKIADLLAEHGVTLKNGADKNEEILSPFYPLEKVD 1993
Query: 1121 FLKRCFKARGDRYLAPXXXXXXXXXLHWVRETNMSNAVATQNNVEGFLRE-LFH 963
FLKR F +AP LHW+R+ + A AT N E LFH
Sbjct: 1994 FLKRKFVHYQGHVVAPLNPVNITERLHWIRK-GLGEADATLENCSSAAFEALFH 2046
>ref|YP_007697622.1| polyprotein [Arracacha virus B] gi|385724523|gb|AFI74271.1|
polyprotein [Arracacha virus B]
Length = 2314
Score = 303 bits (777), Expect = 2e-80
Identities = 257/793 (32%), Positives = 378/793 (47%), Gaps = 39/793 (4%)
Frame = -1
Query: 3152 SELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCYK--VGSLTKTFP 2979
SEL S KH+ +I + Y + + G + L V HV+ + G Y+ VG
Sbjct: 1231 SELVSFLKHVAVMRNI-VTEQDYHLLFIAGRKALFVQHVFKSMPVGTYQLIVGDCVID-K 1288
Query: 2978 FTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKLEKWLLSSHDP--------FMAGSGW 2823
F NR + + L KDL IV T P L K LL + F S
Sbjct: 1289 FFFNRDALQCKSLTDKDLCIVTMSHTVP--PFAPLAKRLLFDEEEKLPRQALGFFCHSEP 1346
Query: 2822 FMEMLFRGNGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTICDDTGTGYRNDF 2643
++E L R +G+ ++ + T+ + D+ + L K +Y + G
Sbjct: 1347 YVE-LDRISGISH-RMQKLEQTVYENPDILYETSTGLLPLKKAYKYEMVTSPGF------ 1398
Query: 2642 FYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITKE-EYLEASLLL 2466
CG L+ G+KI +H + K +I + ++ ++ E S +
Sbjct: 1399 -----CGDVLLQVCS--SGVKILGMH-----TTAGKQSIWRYANTVTLQDIEGAYPSEWV 1446
Query: 2465 GEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSGAPRQATTSEIKKSSISADLEA 2286
GE + L C +GE A EGL P T + + S IS+DL+
Sbjct: 1447 GE-EPDLPISNTSRDFC-AGEV---ARVGTNEGL-----KPHFPTKTSLVPSIISSDLKE 1496
Query: 2285 LTGEKRKT--EPAIIHNRDTRLHD---RHLDIFKKGMLKYKAVAADMSPVTEEEEKIWDL 2121
+ PAI+H+RD R+ + D FK GMLKY A E+ + D
Sbjct: 1497 DDDNHIPSVMTPAILHSRDPRIVEFGHEGFDPFKDGMLKYTRAAGPFDEADEDFQDALDD 1556
Query: 2120 TWDSIFDLPGGIERK-------CHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKN 1962
+ I DL E + C +L+E++ LNG + +V T+EG+P R
Sbjct: 1557 VFLDIGDLRTEKEIEQNQSKAICRILNENDTLNGGIEQDFEDPIVSKTAEGYPFCCQRPP 1616
Query: 1961 GEAGKERFLLGLPGCYTLNRDLPMYQRILDM-DELCATTIPCIVGLDTAKDERLPLSKIY 1785
G++GK L G+PG ++L ++ P+ I + D L ++G+D KDE++ +K+
Sbjct: 1617 GKSGKGWLLGGIPGDWSLKKEGPLNDAIEHLEDNLANEVFEPLIGIDFPKDEKVMRAKVE 1676
Query: 1784 QDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAK 1605
K RLFTILP YN +VR+++ FVA LM+ HN P KVG+N +W L ++ A
Sbjct: 1677 VKPKVRLFTILPFHYNLVVRRFYLDFVARLMQKHNETPVKVGLNTSSLEWQHLYDQLSAV 1736
Query: 1604 GTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQGD-----RRLHLMLA-------AT 1461
G NWFNGDYSRFDG+TPRC+L +A RI+ Y D+ +++ +A A
Sbjct: 1737 GFNWFNGDYSRFDGITPRCVLQGLAIRISKFYRQDEAQGLVSKKKIRTSVAHSLLLDMAN 1796
Query: 1460 TRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMA---SSSLFFSDCVEL 1290
+R G+AG+G+Y+VS GIPSGF LTVIVNSLVN F + +++ +M+ S +F+ V
Sbjct: 1797 SRYGIAGLGVYKVSSGIPSGFPLTVIVNSLVNSFFLHFAYRKLMSQSLKSHFWFTKNVAF 1856
Query: 1289 AVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFLKR 1110
AV GDDNLVSV E + +NLK ++ FL FG TLK+G++K +EIL F P E DFLKR
Sbjct: 1857 AVYGDDNLVSVSESIKNVYNLKTIAHFLTQFGVTLKNGANKDEEILSSFYPIEGVDFLKR 1916
Query: 1109 CFKARGDRYLAPXXXXXXXXXLHWVRETNMSNAVATQNNVEGFLRELFHYGDKELYCKWR 930
F L LHWVR+ A +N L E +G E Y R
Sbjct: 1917 TFVPFRGVMLDRLNKENTLERLHWVRK-GTDEIDAILDNCGSCLLECIAHG-PEFYEDIR 1974
Query: 929 RDLIDLCSKNRVP 891
L+ + K ++P
Sbjct: 1975 SKLVRVLGKRKLP 1987
>gb|AAY56484.1| unknown, partial [Strawberry latent ringspot virus]
Length = 173
Score = 233 bits (594), Expect(2) = 2e-71
Identities = 107/125 (85%), Positives = 111/125 (88%)
Frame = -1
Query: 770 VAPGVHIVPVQQCLKWKTGEVPNVVWCGPNCPNQLRNANTCFQIQAPQGSRYPLRNTVRN 591
VAP VHIVPVQ CLKWK EVP VVWCGPNCPNQL+N N CF IQAPQGSRYPLRNTV+N
Sbjct: 3 VAPNVHIVPVQTCLKWKPSEVPTVVWCGPNCPNQLKNTNGCFFIQAPQGSRYPLRNTVKN 62
Query: 590 LLKKVHQRGDEVYFTGALNQSLVHWVAAFYASMYRESFHHSTYMKAYFGDNDAGLLESTV 411
LLK+VHQR DEVYFTGALNQSLVHWVAAFYASMYRESF HS YM AYFGDNDAGLLE+
Sbjct: 63 LLKRVHQRSDEVYFTGALNQSLVHWVAAFYASMYRESFSHSKYMAAYFGDNDAGLLEAVT 122
Query: 410 AAKGW 396
AAKGW
Sbjct: 123 AAKGW 127
Score = 68.2 bits (165), Expect(2) = 2e-71
Identities = 30/39 (76%), Positives = 31/39 (79%)
Frame = -2
Query: 388 FFS*AFLLENIPGPDGHQLGKPVNFVFHYHGFTWFIYFS 272
FFS FL ENIPGPDGH LGKPVNFV HYHG TWF F+
Sbjct: 132 FFSYVFLKENIPGPDGHLLGKPVNFVCHYHGTTWFRVFN 170
>gb|AGR55590.1| polyprotein [Lettuce necrotic leaf curl virus]
Length = 2223
Score = 273 bits (698), Expect = 8e-71
Identities = 199/572 (34%), Positives = 298/572 (52%), Gaps = 27/572 (4%)
Frame = -1
Query: 2321 IKKSSISADLEALTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAVAADMSPVTEE 2142
++KS I + + G TEP+I+ + D R D + KG+ K+ A T E
Sbjct: 1165 LRKSEIFDAMTKVLGP-HSTEPSILTHHDDRPEVEGFDPYVKGVEKFNETACCFDHETVE 1223
Query: 2141 ---EEKIWDLTWDSI-FDLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVL 1974
+ DL + + D+PGG K + SE E LNG+ G+ Y M +ST+ G+P L
Sbjct: 1224 VALQHMSEDLLVELVKVDVPGG---KPTVRSELEILNGIPGEQFYDSMDMSTACGYPYTL 1280
Query: 1973 NRKNGEAGKER--FLLGLPGCYTLNRDLPMYQRILDMDE-LCATTIPCIVGLDTAKDERL 1803
+ E GK + +L G PG Y L+R+ P++ +++DE + I IV + AKDERL
Sbjct: 1281 S----EFGKSKRGYLDGTPGEYVLHRERPVFADFIELDESIRQGRITEIVSCECAKDERL 1336
Query: 1802 PLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILG 1623
PL KIYQ KTRLFTILP YN LVRKYF F A LM+ HN +P KVGINP G +WT+L
Sbjct: 1337 PLEKIYQRPKTRLFTILPFHYNMLVRKYFLDFSASLMRAHNTLPCKVGINPSGLEWTVLA 1396
Query: 1622 KRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQGDR----RLHLMLAATTR 1455
K F+ DYS FDG P + + Y D G R L++ A+
Sbjct: 1397 KNFSETADVGFSADYSSFDGRAPVFIFQRFCDIVDKYYGDLPGSENSLARHALLMMASNH 1456
Query: 1454 LGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHM----------MASSSLFFS 1305
L + G L+RV GG+PSGF+LTV+ NSL+N F +R+++E + M + FS
Sbjct: 1457 LTLCGDKLFRVVGGMPSGFSLTVLFNSLLNEFYMRYAFERLLHHPRNITRTMGMTQRTFS 1516
Query: 1304 DCVELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILP-EFNPPEK 1128
+ + +A+ GDDNLV+V + ++L ++ L +K+G DK++++ +F P +
Sbjct: 1517 E-LFIAIYGDDNLVAV-PLHLRWYSLPAIAEELQKVNVVIKNGLDKNQDVAQVQFQPLGE 1574
Query: 1127 CDFLKRCFKARG-DRYLAPXXXXXXXXXLHWVRETNMSNAV-ATQNNVEGFLRELFHYGD 954
FL R F+ Y AP L W+R T + + A N+EG LRE + +G
Sbjct: 1575 LTFLSRGFRKHVLGYYQAPLKWVSIVEPLRWIRPTPENPPIDALMQNIEGSLREAYMHG- 1633
Query: 953 KELYCKWRRDLIDLCSKNRVPHPTTYSFEELERSWLSGKSV---ASIFEKEESEVVVIRD 783
K ++ +R ++ + ++ R+P T FEELER W+S + ++ E E E++ +
Sbjct: 1634 KLVFQDFRDKVVQVLNERRIPFKTLPFFEELEREWVSEVTAGTRGALVEPSEHELLSL-- 1691
Query: 782 GASDVAPGVHIVPVQQCLKWKTGEVPNVVWCG 687
P V + V+Q + VP V +CG
Sbjct: 1692 ------PTVEQLTVEQYSREINEFVPGVHFCG 1717
>ref|NP_951030.1| RNA-dependent RNA polymerase [Broad bean wilt virus 1]
Length = 699
Score = 255 bits (651), Expect = 2e-68
Identities = 172/491 (35%), Positives = 251/491 (51%), Gaps = 14/491 (2%)
Frame = -1
Query: 2348 APRQATTSEIKKSSISADLEALTGEKRKTEPAIIHNRDTRL---HDRHLDIFKKGMLKYK 2178
+P S K S + +E P+I+ D RL + D F GM KY
Sbjct: 27 SPEHTVGSGGKTSFLETPIEWQLNRPCGKIPSILVKGDVRLAGTENADYDPFAVGMTKYA 86
Query: 2177 AVAADMSP-----VTEEEEKIWDLTWDSIFDLPGGIERKCHLLSEDENLNGVNGDNEYRG 2013
A P V E + W D P +E LNG+ +
Sbjct: 87 KEAGPFEPNGLDRVCESIAETWHDASDGFEFGPVDLEAA---------LNGIENMEYFDA 137
Query: 2012 MVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTIPCIV 1833
+V+STSEG+P L+RK GE GK R++ G PG + D + I +E+ T +P +
Sbjct: 138 LVLSTSEGYPYRLDRKPGEKGKARYVEGEPGNLEIT-DERILADIHWFEEISKTQVPDLY 196
Query: 1832 GLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGIN 1653
++ KDERLP+ K+ ++ K+RLFT+LPM YN +RK F +FV +MK +V+P +VGIN
Sbjct: 197 CIECVKDERLPVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLPCQVGIN 256
Query: 1652 PLGYDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQGDRR--LH 1479
P W + R+ KG + DYSRFDG P+C++++IA + + + +R +
Sbjct: 257 PYSRQWGKVADRLLEKGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVGETGAEREQTKN 316
Query: 1478 LMLAATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSLF---F 1308
LMLA +R + G LYRV GIPSGF LTVIVNS++N L+++++ + SL F
Sbjct: 317 LMLACCSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRDHF 376
Query: 1307 SDCVELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEK 1128
V + V GDDNL+SV E +S+FN L +F+ + G + DG DK+K + EF E
Sbjct: 377 DTYVAMVVYGDDNLISVSEAISSKFNGNFLVNFMCNLGIKVTDGVDKTK-VGIEFRTIED 435
Query: 1127 CDFLKRCFKARGD-RYLAPXXXXXXXXXLHWVRETNMSNAVATQNNVEGFLRELFHYGDK 951
CDFLKR FK D + LH+V+ + + A +N LREL+ G
Sbjct: 436 CDFLKRKFKENADGTWSGVMAEEHLWPQLHFVKAKKVEMSEAYISNCNNILRELW-LGSP 494
Query: 950 ELYCKWRRDLI 918
E +RR++I
Sbjct: 495 EKAAAFRREVI 505
>ref|YP_002158831.1| unnamed protein product [Mikania micrantha mosaic virus]
Length = 474
Score = 248 bits (632), Expect = 3e-68
Identities = 163/453 (35%), Positives = 241/453 (53%), Gaps = 15/453 (3%)
Frame = -1
Query: 2258 PAIIHNRDTRLH---DRHLDIFKKGMLKYKAVAADMSP-----VTEEEEKIW-DLTWDSI 2106
P+++ D RL + D F GM KY A V EE ++ W D D
Sbjct: 21 PSVLGRNDPRLAGTMNADYDPFSVGMTKYAKEAGPFDADTLVAVCEEIKETWYDARGDFT 80
Query: 2105 FDLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGL 1926
F+ +S + LNGV + +V+STSEG+P L R G+ GK R++ G
Sbjct: 81 FEE----------VSLEVALNGVANLEYFDAIVLSTSEGYPYRLERNPGDKGKARYVEGD 130
Query: 1925 PGCYTLNRDLPMYQRILDMDELCATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPM 1746
G YT++ D M + I +E +P + ++ KDERLP K+ + K+RLFT+LPM
Sbjct: 131 AGDYTIS-DKQMLEDITWFEEESKMRVPDLYCIECVKDERLPKRKVLEKPKSRLFTVLPM 189
Query: 1745 EYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFD 1566
YN ++RK F +FV M +V+P +VG+NP +W+ + ++ KG N DYSRFD
Sbjct: 190 SYNLVIRKKFLNFVRFFMTRRDVLPCQVGVNPYSREWSRIACKLLEKGNNILCCDYSRFD 249
Query: 1565 GVTPRCLLIEIARRITLLY--NDDQGDRRLHLMLAATTRLGVAGIGLYRVSGGIPSGFAL 1392
G P+C++++I + I ND++ + +L+LA T R + LYRV GIPSGF L
Sbjct: 250 GFLPKCIMLKIGQLIGSFMGKNDEEVTQICNLLLACTGRYAICEKLLYRVENGIPSGFPL 309
Query: 1391 TVIVNSLVNHFLVRWSWEHMMASSSLF---FSDCVELAVVGDDNLVSVKEIAASEFNLKK 1221
TVIVNS++N LV++++ A + + F V L V GDDNL+SV + +S+FN +
Sbjct: 310 TVIVNSILNEILVKYAYRMCFADNPMIRESFDTHVALVVYGDDNLISVSDAISSKFNGEF 369
Query: 1220 LSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFLKRCFKARGD-RYLAPXXXXXXXXXL 1044
L F T+ DG DK+K+ + F CDFLKR FK D ++ P L
Sbjct: 370 LVDFFLRLSITVTDGVDKTKQGI-SFRKLTDCDFLKRNFKVLPDGEWVGPMSRESLWPQL 428
Query: 1043 HWVRETNMSNAVATQNNVEGFLRELFHYGDKEL 945
H+VR + A A N+ LREL+ +G +E+
Sbjct: 429 HFVRAKKLEMADAYVANLNNILRELWLHGSEEV 461