BLASTX nr result

ID: Rehmannia27_contig00029741 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia27_contig00029741
         (911 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAD59438.1| Rps16 protein [Clivia gardenii]                        55   2e-06
ref|YP_009175987.1| ribosomal protein S16 (chloroplast) [Ficus r...    55   4e-06

>emb|CAD59438.1| Rps16 protein [Clivia gardenii]
          Length = 74

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 25/38 (65%), Positives = 33/38 (86%)
 Frame = +3

Query: 159 IVHDGARVERINSFLGGKDLGLMPINQLEQLRKYIFHI 272
           IVHDGAR + I+SF+GGK+LGL+ IN+L+QL KYI +I
Sbjct: 25  IVHDGARTKSIDSFIGGKNLGLVTINKLDQLCKYILNI 62


>ref|YP_009175987.1| ribosomal protein S16 (chloroplast) [Ficus racemosa]
           gi|937500929|gb|ALI30688.1| ribosomal protein S16
           (chloroplast) [Ficus racemosa]
          Length = 117

 Score = 54.7 bits (130), Expect = 4e-06
 Identities = 26/38 (68%), Positives = 31/38 (81%)
 Frame = +3

Query: 159 IVHDGARVERINSFLGGKDLGLMPINQLEQLRKYIFHI 272
           I+HDGAR ERI+SF GGK+LGL+ IN+L QL K IF I
Sbjct: 4   IIHDGARAERIDSFFGGKNLGLVSINKLRQLCKSIFDI 41


Top