BLASTX nr result
ID: Rehmannia27_contig00028693
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia27_contig00028693
(3411 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera] 357 e-144
gb|KYP75940.1| Retrovirus-related Pol polyprotein from transposo... 345 e-135
emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera] 313 e-134
gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposo... 336 e-131
emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera] 299 e-127
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc... 321 e-127
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group... 315 e-126
emb|CAN68489.1| hypothetical protein VITISV_037543 [Vitis vinifera] 325 e-126
gb|KYP61342.1| Retrovirus-related Pol polyprotein from transposo... 321 e-126
gb|KHN36156.1| Retrovirus-related Pol polyprotein from transposo... 325 e-121
gb|KHN22040.1| Retrovirus-related Pol polyprotein from transposo... 326 e-121
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p... 312 e-119
emb|CAN79148.1| hypothetical protein VITISV_004343 [Vitis vinifera] 301 e-118
gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group] 312 e-118
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|... 308 e-118
gb|KYP67039.1| Retrovirus-related Pol polyprotein from transposo... 321 e-118
emb|CAN77295.1| hypothetical protein VITISV_005638 [Vitis vinifera] 296 e-118
emb|CAN73924.1| hypothetical protein VITISV_041509 [Vitis vinifera] 298 e-117
gb|KYP71160.1| Retrovirus-related Pol polyprotein from transposo... 315 e-117
gb|KYP68392.1| Retrovirus-related Pol polyprotein from transposo... 320 e-116
>emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]
Length = 1424
Score = 357 bits (916), Expect(3) = e-144
Identities = 180/366 (49%), Positives = 236/366 (64%), Gaps = 3/366 (0%)
Frame = +1
Query: 1321 MKISHIGNSILNSS---KTSFLLKNLLHVPHITMNLISVSQFAKDNKVYFEFHPLFCLVK 1491
+ I HIG++ +SS + LK LLHVP IT NL+SVS+FA DN V+FEFHP C VK
Sbjct: 390 LPIHHIGHTSFSSSFIPSKTLALKQLLHVPEITKNLLSVSKFAADNHVFFEFHPTSCFVK 449
Query: 1492 DQATCTTLLRGTVKNGLYSFHLSLPICSNPLLRLPSIQLHLLLFFPVFSNKPVVFHSVKM 1671
D +T T L+ G +K GLY F N L+LP + S +P V S
Sbjct: 450 DPSTRTVLMHGQLKGGLYVF-------DNTQLKLPLHNSSCFASTALPSKEPTVPASPTS 502
Query: 1672 PSLTTWHSMLGHASIEIVKRALNRCNVPYSGNFNENVCSSCLQSKIHKLPFSGSNTLYHE 1851
P T WH+ LGH S IV LN+CN+P+ +CS C KIHK F S + Y +
Sbjct: 503 P-FTLWHNRLGHPSSHIVSLVLNKCNLPHLNKIPSLICSXCCMGKIHKSSFLHSTSSYTK 561
Query: 1852 PFQLIHTDLWGPSPVQSTHGYKYYVSFIDHATRYTWFYLLKAKSDTYQAFINFKALVET* 2031
P +LIHTDLWGP+ S+HG++YY+ FID +R+TW Y+LK KS+ +Q F++FK+ VE
Sbjct: 562 PLELIHTDLWGPASTPSSHGHQYYIHFIDAYSRFTWIYMLKHKSEAFQVFLHFKSQVELQ 621
Query: 2032 FEKKIKMVQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKYMHIVEVGLALLA 2211
KIK VQSD GGE+ + +Q+ ++GI HRISCPYT +QNGLAERK+ HIVE G+ALLA
Sbjct: 622 LGHKIKAVQSDWGGEYRSFTQYLTSNGIIHRISCPYTHEQNGLAERKHRHIVEHGIALLA 681
Query: 2212 QSHLPMRFWPDAFCSSVYLINRTPSKILHYISPFEALAGNKPDYTSPRAFGCLCYPHLRS 2391
Q+ LP ++W +AF +SVYLINR P+ +L SP E L KP Y+ + FGC+CYP+LR
Sbjct: 682 QASLPFKYWDEAFRTSVYLINRLPTPVLKNKSPLEVLFHQKPSYSXLKVFGCMCYPNLRP 741
Query: 2392 YNKHKL 2409
+N HKL
Sbjct: 742 FNHHKL 747
Score = 143 bits (361), Expect(3) = e-144
Identities = 103/371 (27%), Positives = 161/371 (43%), Gaps = 25/371 (6%)
Frame = +2
Query: 281 QQISTAVTGYGLEDFLTGKGLPPPKYAADDCET---INPAYISWVRQDQXXXXXXXXXXX 451
+QI T + G+ L+ FL+ + P ++ + D ET +NP + W +Q Q
Sbjct: 33 KQILTTLRGHKLQHFLSETSVLPSEFLSSDDETQNHVNPKFQDWEQQXQLIMSXLLASIT 92
Query: 452 XXXXXTTVGLNSSSAIWSALKTNFASQTTAKVMQYRLQLQMLRKCTMPMREYLNKVKTCC 631
V ++S+ +W L+ FA+Q AKV Q++ QL +K + + +YL K++
Sbjct: 93 DALLTRMVNCDTSAQVWKTLELYFATQVRAKVTQFKTQLHNTKKGDLSISDYLLKIRNVV 152
Query: 632 DILAAAGEPVSEKDQVLYILSGLGSEYNPVLVSITSRITPCSLMETHALLLSFENRLEIL 811
D+LA G +S KD + I GL +Y ++S+ SR+ P ++ E ALLL+ E+R+E
Sbjct: 153 DLLALVGHKISVKDHIBAIFEGLPQDYETFIISVNSRLDPYTVEEIEALLLAQESRIE-- 210
Query: 812 DNFQISPEGTASIXXXXXXXXXXXXXSGNRGRC------SPTH----------XXXXXXX 943
N +I+ T S+ R PTH
Sbjct: 211 KNIKIADFSTPSLAHLITTNRNGSPHFNYRASTRNSNFRPPTHSGNGMQHFRGNFTQQGR 270
Query: 944 XXXXXXXXXXXXXXXCQISYRTNHTADKCFYRADLNYVPNSLTVNYVQSNINPQHGGNNQ 1123
CQ+ R H +C+YR D QS P N+
Sbjct: 271 GRHGRGSWKGNNKPQCQLCGRIGHVVMQCYYRFD-------------QSFTGPSQLQGNR 317
Query: 1124 PQGASPSAAHNNASGSLISG------SQVDLGYDNQWYPDSGASNHVTYDFGNLSIASEF 1285
PQG + + H S G + ++ DN WYPDSGA++H+T + NL S+F
Sbjct: 318 PQG-NMAHLHQQLSEXFFPGTPSVKPTTAEIIQDNNWYPDSGATHHLTPNLNNLLTKSQF 376
Query: 1286 QGDEKVHVGNG 1318
++V VGNG
Sbjct: 377 PSSDEVFVGNG 387
Score = 65.1 bits (157), Expect(3) = e-144
Identities = 27/52 (51%), Positives = 37/52 (71%)
Frame = +2
Query: 2411 FRSKPCTFIGYDTHYKGYKVLLPDNKIIITRDVVFDESVIPFANIEPSQPKT 2566
FRS PCTF+GY ++KGYK L P+ I+I+RDV+FDE PFA ++ + T
Sbjct: 749 FRSIPCTFLGYSLNHKGYKCLSPNGNILISRDVIFDEXAFPFAQLQSQKQXT 800
Score = 217 bits (552), Expect = 7e-54
Identities = 105/181 (58%), Positives = 136/181 (75%)
Frame = +2
Query: 2852 HPMVTRSKSGIYKPKQLFHADLINEEPSCYKQALQVPVWKAAMEKEFSALLKNGTWTLCE 3031
H M+TRSK GI+KPK A LI+ P+ +ALQ+ WK AM E+ ALL+N TW L
Sbjct: 861 HHMITRSKXGIFKPK----AYLISTTPTSVPEALQLSHWKQAMTDEYLALLRNNTWDLVP 916
Query: 3032 LPSDRKLIGCKWVFKVKKDASGSIIKHKARLVAKGYTQLMGFDYTETFSPVIKPTTDRVV 3211
P+DRKLIGCKWVFKVK++ G+I K+KARLVAKG+ Q+ GFD+ ETFSPV+KPTT R+V
Sbjct: 917 PPTDRKLIGCKWVFKVKENXDGTINKYKARLVAKGFHQIAGFDFNETFSPVVKPTTIRIV 976
Query: 3212 LSLAVTHSWPIRQIDIDNAFLNGDIDTELYMEQPPGFEDVRGQHLVCKLHKSLYGLKQAS 3391
L++A+ W +RQ+D++NAFLNGD+ +++M QP GF D + VCKL+KSLYGLKQA
Sbjct: 977 LTIALNLQWKVRQLDVNNAFLNGDLHEDIFMHQPQGFIDPVNPNYVCKLNKSLYGLKQAP 1036
Query: 3392 R 3394
R
Sbjct: 1037 R 1037
>gb|KYP75940.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1403
Score = 345 bits (885), Expect(3) = e-135
Identities = 175/364 (48%), Positives = 231/364 (63%), Gaps = 3/364 (0%)
Frame = +1
Query: 1327 ISHIGNSILNSSKTS--FLLKNLLHVPHITMNLISVSQFAKDNKVYFEFHPLFCLVKDQA 1500
I+H G S ++ +S F LK LLHVPHIT NL+SVS+F KDN VY EFH +CLVK Q
Sbjct: 369 INHTGTSFFHTPMSSKIFTLKELLHVPHITKNLLSVSKFCKDNNVYVEFHTNYCLVKSQD 428
Query: 1501 TCTTLLRGTVKNGLYSFHLSLPICSNPLLRLPSIQLHLLLFFPVFSNKPVVFHSVKMPSL 1680
+ TLLRG +KNGLY F + P + H + P +N+ ++ S
Sbjct: 429 SKETLLRGNLKNGLYVF-------DEVQILKPDVYEHTVDSVP--TNRTTLYVQRTRKSY 479
Query: 1681 TTWHSMLGHASIEIVKRALNRCNVPYSGNFNEN-VCSSCLQSKIHKLPFSGSNTLYHEPF 1857
WH+ L HAS +IV+ + CNVP N ++ VC SC K H LPFS S T+Y+ P
Sbjct: 480 DVWHNRLAHASRKIVQAVMKTCNVPMPINHQDSIVCKSCCIGKSHTLPFSDSYTVYNSPL 539
Query: 1858 QLIHTDLWGPSPVQSTHGYKYYVSFIDHATRYTWFYLLKAKSDTYQAFINFKALVET*FE 2037
+L+++D+WGPS S G++YYV F D ++YTW Y + KS+T FI+FK++VE F
Sbjct: 540 ELVYSDVWGPSHYASREGFRYYVHFTDAFSKYTWIYFMHNKSETAHHFIHFKSMVENQFG 599
Query: 2038 KKIKMVQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKYMHIVEVGLALLAQS 2217
KIKM QSDGG EF L++ F +GI HR+SCP++ QQNG AERK+ HI EVGL LL+ S
Sbjct: 600 HKIKMFQSDGGKEFTCLTKLFNENGITHRLSCPHSHQQNGTAERKHRHITEVGLTLLSSS 659
Query: 2218 HLPMRFWPDAFCSSVYLINRTPSKILHYISPFEALAGNKPDYTSPRAFGCLCYPHLRSYN 2397
LP FW DAF +++++INR P+ IL + SP+E L PDY R FGC CYPHLR +N
Sbjct: 660 GLPHIFWSDAFSTAIHVINRLPTPILGHKSPYEVLFNKIPDYLLLRPFGCACYPHLRPFN 719
Query: 2398 KHKL 2409
HK+
Sbjct: 720 SHKM 723
Score = 137 bits (346), Expect(3) = e-135
Identities = 98/355 (27%), Positives = 160/355 (45%), Gaps = 9/355 (2%)
Frame = +2
Query: 281 QQISTAVTGYGLEDFLTGKGLPPPKYAADDCET---INPAYISWVRQDQXXXXXXXXXXX 451
QQ + + GY L+ + G P ++ D+ + ++P Y + +QD
Sbjct: 34 QQAESTIRGYRLKKHILGAMHVPAQHKTDEDKAKGVLSPEYEDYDQQDNLLKSWLLESME 93
Query: 452 XXXXXTTVGLNSSSAIWSALKTNFASQTTAKVMQYRLQLQMLRKCTMPMREYLNKVKTCC 631
VG IW+ L+ FASQT A+V Q ++QL+ ++K T + +YL ++K
Sbjct: 94 PQFKVRMVGYEWCHQIWNNLEIYFASQTKARVKQLKIQLRGIKKTTA-INQYLLEIKKIV 152
Query: 632 DILAAAGEPVSEKDQVLYILSGLGSEYNPVLVSITSRITPCSLMETHALLLSFENRLEIL 811
+ LAA G P++ + + I GL EY+P + S+ +R S+ + +LL++ E RLE
Sbjct: 153 NNLAAIGSPLNTAEHIDAIFDGLSEEYDPFITSVLTRTEEYSVEQIESLLMAQEERLEKH 212
Query: 812 DNFQISP------EGTASIXXXXXXXXXXXXXSGNRGRCSPTHXXXXXXXXXXXXXXXXX 973
+ P +G+ + +G GR
Sbjct: 213 KASESVPLQANLAQGSFNSRKQFTNQGRGSNNNGTHGR-----GPHRGRGRGRSAQHFGR 267
Query: 974 XXXXXCQISYRTNHTADKCFYRADLNYVPNSLTVNYVQSNINPQHGGNNQPQGASPSAAH 1153
CQ+ + H A C++R D Y +L N N + GN Q A
Sbjct: 268 GNKQPCQVCGKIGHIAFHCWHRYDQQYTEPNL-----NHNTNVYNPGNQQQMQA------ 316
Query: 1154 NNASGSLISGSQVDLGYDNQWYPDSGASNHVTYDFGNLSIASEFQGDEKVHVGNG 1318
+I+GSQ ++ YD+QWYPDSGA+NH+T D NL +++ G +K+H+GNG
Sbjct: 317 ------MIAGSQ-NMVYDDQWYPDSGATNHLTSDLNNLGSKTDYTGQDKIHMGNG 364
Score = 52.4 bits (124), Expect(3) = e-135
Identities = 23/41 (56%), Positives = 27/41 (65%)
Frame = +2
Query: 2411 FRSKPCTFIGYDTHYKGYKVLLPDNKIIITRDVVFDESVIP 2533
FRS C FIGY +KGYK + KIII+R+VVFDE P
Sbjct: 725 FRSSQCVFIGYSMQHKGYKCFTTNGKIIISRNVVFDEDTFP 765
Score = 209 bits (531), Expect = 2e-51
Identities = 103/182 (56%), Positives = 129/182 (70%)
Frame = +2
Query: 2849 QHPMVTRSKSGIYKPKQLFHADLINEEPSCYKQALQVPVWKAAMEKEFSALLKNGTWTLC 3028
QHPM+TR+K G++KPK A L EP QAL WK AM+ E++ALLKN TW L
Sbjct: 861 QHPMITRAKIGVFKPK----AFLATSEPISVAQALDNKHWKQAMQDEYNALLKNHTWDLV 916
Query: 3029 ELPSDRKLIGCKWVFKVKKDASGSIIKHKARLVAKGYTQLMGFDYTETFSPVIKPTTDRV 3208
LP R I CKW+FK K GSI++HKARLVA+G++Q G DYT+TFSPV+KP + R+
Sbjct: 917 SLPPGRTAITCKWIFKNKYKQDGSILRHKARLVARGFSQQQGLDYTDTFSPVVKPVSIRI 976
Query: 3209 VLSLAVTHSWPIRQIDIDNAFLNGDIDTELYMEQPPGFEDVRGQHLVCKLHKSLYGLKQA 3388
VL+LAV+ WPI QID+DNAFLNGD+ ++YM QP GF + + VCKL K+LYGLKQA
Sbjct: 977 VLALAVSKGWPIHQIDVDNAFLNGDLKEDIYMLQPQGFHN-GAPNTVCKLRKALYGLKQA 1035
Query: 3389 SR 3394
R
Sbjct: 1036 PR 1037
>emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]
Length = 1432
Score = 313 bits (801), Expect(4) = e-134
Identities = 166/367 (45%), Positives = 218/367 (59%), Gaps = 4/367 (1%)
Frame = +1
Query: 1321 MKISHIGNSILNSSKTSFLLKNLLHVPHITMNLISVSQFAKDNKVYFEFHPLFCLVKDQA 1500
+ IS+IG+ L+S SF LK + HVP I+ NLISV++F +N EFH VKD
Sbjct: 382 LSISNIGSKQLHSHTHSFRLKKVFHVPFISANLISVAKFCSENNALIEFHSNAFFVKDLH 441
Query: 1501 TCTTLLRGTVKNGLYSFHLSLPICSNPLLRLPSIQLHLLLFFPVFSNKPVVFHSVKMPSL 1680
T L +G ++NGLY F P+ SN L SI N FHS ++
Sbjct: 442 TKMVLAQGKLENGLYKF----PVFSN-LKPYSSI------------NNASAFHSQFSSTV 484
Query: 1681 TT----WHSMLGHASIEIVKRALNRCNVPYSGNFNENVCSSCLQSKIHKLPFSGSNTLYH 1848
WH+ LGHAS +IV + +N CNV SG + VCS C +K H+LP SN
Sbjct: 485 ENKAELWHNRLGHASFDIVSKVMNTCNVA-SGKYKSFVCSDCQLAKSHRLPTQLSNFHAS 543
Query: 1849 EPFQLIHTDLWGPSPVQSTHGYKYYVSFIDHATRYTWFYLLKAKSDTYQAFINFKALVET 2028
+P +L++TD+WGP+ ++ST G +Y++ F+D +RYTWFY L+ K F FK +E
Sbjct: 544 KPLELVYTDIWGPASIKSTSGARYFILFVDDYSRYTWFYSLQTKDQALPIFKXFKLQMEN 603
Query: 2029 *FEKKIKMVQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKYMHIVEVGLALL 2208
F+ KIK +QSD GGEF + + F Q GI HR SCPY QNG ERK+ H+VE GLALL
Sbjct: 604 QFDTKIKCLQSDNGGEFRSFTSFLQAVGIAHRFSCPYNSXQNGRVERKHRHVVETGLALL 663
Query: 2209 AQSHLPMRFWPDAFCSSVYLINRTPSKILHYISPFEALAGNKPDYTSPRAFGCLCYPHLR 2388
+ + LPM++W AF + +LINR PSK+L Y SP+ L PDY S R FGCLCYP +R
Sbjct: 664 SHASLPMKYWHYAFQTXTFLINRMPSKVLEYDSPYFTLFRRHPDYKSFRVFGCLCYPFIR 723
Query: 2389 SYNKHKL 2409
YN HKL
Sbjct: 724 PYNTHKL 730
Score = 176 bits (446), Expect(4) = e-134
Identities = 114/353 (32%), Positives = 178/353 (50%), Gaps = 8/353 (2%)
Frame = +2
Query: 284 QISTAVTGYGLEDFLTGKGLPPPKYAADDCETINPAYISWVRQDQXXXXXXXXXXXXXXX 463
QI + G EDF+ G + P K + +NPA+++W RQD+
Sbjct: 51 QIDNVIFANGFEDFIDGTSICPEKDLSPG--VMNPAFVAWRRQDRTILSWIYSSLTPGIM 108
Query: 464 XTTVGLNSSSAIWSALKTNFASQTTAKVMQYRLQLQMLRKCTMPMREYLNKVKTCCDILA 643
+G N+S + W+AL++ F+S + A++MQ RL+LQ +K +M M +Y+ K+K D LA
Sbjct: 109 AQIIGHNTSHSAWNALESIFSSSSRARIMQLRLELQSTKKGSMSMIDYIMKIKGAADNLA 168
Query: 644 AAGEPVSEKDQVLYILSGLGSEYNPVLVSITSRITPCSLMETHALLLSFENRLEILDNFQ 823
A GEPVSE+DQV+ +L GLGS+YN V+ +I R SL H++LL+FE+RLE + +
Sbjct: 169 AIGEPVSEQDQVMNLLGGLGSDYNAVVTAINIRDDKISLEAIHSMLLAFEHRLEQQSSIE 228
Query: 824 ISPEGTASIXXXXXXXXXXXXXSGNRGR-CSPTH-------XXXXXXXXXXXXXXXXXXX 979
+ +A+ +G RG+ SP +
Sbjct: 229 ---QMSANYASSSNNRGGGRKFNGGRGQGYSPNNNNYTYRGRGRGGRNGQGGRQNSSPSE 285
Query: 980 XXXCQISYRTNHTADKCFYRADLNYVPNSLTVNYVQSNINPQHGGNNQPQGASPSAAHNN 1159
CQ+ + HTA C++R D+++ T+++ +N N NN P A ++A NN
Sbjct: 286 KPQCQLCGKFGHTAQICYHRFDISFQGGQTTISHSLNNGNQ----NNIP--AMVASASNN 339
Query: 1160 ASGSLISGSQVDLGYDNQWYPDSGASNHVTYDFGNLSIASEFQGDEKVHVGNG 1318
+ D WY DSGAS+H+T + GNL+ S + G +KV +GNG
Sbjct: 340 PA-------------DESWYLDSGASHHLTQNLGNLTSTSPYTGTDKVTIGNG 379
Score = 40.0 bits (92), Expect(4) = e-134
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +2
Query: 2411 FRSKPCTFIGYDTHYKGYKVL-LPDNKIIITRDVVFDESVIPFANIEPS 2554
+RS C F+GY ++KG+ L ++ IT VVFDES P A + S
Sbjct: 732 YRSVQCLFLGYSLNHKGFLCLDYATGRVYITPHVVFDESTFPLAQSKSS 780
Score = 25.0 bits (53), Expect(4) = e-134
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = +3
Query: 189 EAAAVAIQPVVHLQSQLVSVKLTESNYLIWSSK 287
+++ +A P + + + VKL +NY++W S+
Sbjct: 19 QSSTMASIPSYQMLNHTLPVKLDRTNYILWRSQ 51
Score = 190 bits (483), Expect = 1e-45
Identities = 94/180 (52%), Positives = 123/180 (68%), Gaps = 1/180 (0%)
Frame = +2
Query: 2858 MVTRSKSGIYKPKQLFHADLIN-EEPSCYKQALQVPVWKAAMEKEFSALLKNGTWTLCEL 3034
M TRS GI K K + I EPS KQA + P W AME E +AL +N TW L E
Sbjct: 863 MTTRSMRGITKKKTILDLSAIKVSEPSTLKQAFKDPNWTKAMEMEIAALHRNHTWDLVEQ 922
Query: 3035 PSDRKLIGCKWVFKVKKDASGSIIKHKARLVAKGYTQLMGFDYTETFSPVIKPTTDRVVL 3214
P + +IGCKWV+K+K GSI ++KARLVAKGY Q G DY ETFSPV+K T R++L
Sbjct: 923 PPNVNVIGCKWVYKLKHKPDGSIERYKARLVAKGYNQTHGLDYFETFSPVVKAATIRIIL 982
Query: 3215 SLAVTHSWPIRQIDIDNAFLNGDIDTELYMEQPPGFEDVRGQHLVCKLHKSLYGLKQASR 3394
++A++ W IRQ+D+ NAFLNG+++ ++YM QPPG+ D + + VC+L K+LYGLKQA R
Sbjct: 983 TVALSFKWEIRQLDVHNAFLNGELEEQVYMSQPPGYFDPQFPNRVCRLKKALYGLKQAPR 1042
>gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1408
Score = 336 bits (861), Expect(4) = e-131
Identities = 171/350 (48%), Positives = 223/350 (63%), Gaps = 1/350 (0%)
Frame = +1
Query: 1363 KTSFLLKNLLHVPHITMNLISVSQFAKDNKVYFEFHPLFCLVKDQATCTTLLRGTV-KNG 1539
K F L NLL VP IT NLISVSQF+KDN VYFEFHP CLVK Q T LL+G+V +G
Sbjct: 402 KFQFALNNLLFVPSITKNLISVSQFSKDNSVYFEFHPHICLVKSQDTNEVLLQGSVGSDG 461
Query: 1540 LYSFHLSLPICSNPLLRLPSIQLHLLLFFPVFSNKPVVFHSVKMPSLTTWHSMLGHASIE 1719
LY F LP NP + S+Q L +FS V S TWHS LGH +++
Sbjct: 462 LYKFPALLP---NPSTQ--SVQQQQLA--RIFSVNTAATSPV---SFATWHSRLGHPNVD 511
Query: 1720 IVKRALNRCNVPYSGNFNENVCSSCLQSKIHKLPFSGSNTLYHEPFQLIHTDLWGPSPVQ 1899
++K N+ N N C+ C K H+LP + S T+Y+ PF L+++DLWGP+PV
Sbjct: 512 VMKHVSRNYNIQLVSNNKSNFCTPCCLGKSHRLPSNLSRTIYNTPFDLVYSDLWGPAPVT 571
Query: 1900 STHGYKYYVSFIDHATRYTWFYLLKAKSDTYQAFINFKALVET*FEKKIKMVQSDGGGEF 2079
ST GY+YYV+F+D TR+TW YLLK+K+ T+ F F A+V+ + IK +Q+D GGE+
Sbjct: 572 STCGYQYYVTFVDAHTRFTWIYLLKSKAQTFNVFKQFHAMVKNQYHHPIKALQTDWGGEY 631
Query: 2080 IALSQFFQTHGIHHRISCPYTPQQNGLAERKYMHIVEVGLALLAQSHLPMRFWPDAFCSS 2259
+ + + GI HR+ CP+T QNG+AERK+ HIVE+GL L+AQ+ LPM+FW +F ++
Sbjct: 632 RSFTTYLNEVGIQHRLICPHTHHQNGVAERKHRHIVELGLTLMAQAELPMQFWDHSFLTA 691
Query: 2260 VYLINRTPSKILHYISPFEALAGNKPDYTSPRAFGCLCYPHLRSYNKHKL 2409
VYLINR PS + P+ L PDY S R FGC C+PHLR YNKHKL
Sbjct: 692 VYLINRLPSSSIQNAVPYHKLFHQPPDYLSLRIFGCSCFPHLRPYNKHKL 741
Score = 130 bits (327), Expect(4) = e-131
Identities = 102/360 (28%), Positives = 149/360 (41%), Gaps = 14/360 (3%)
Frame = +2
Query: 281 QQISTAVTGYGLEDFLTGKGLPPPKYA--AD-DCETINPAYISWVRQDQXXXXXXXXXXX 451
QQ+ + G+ L +L +P K+A AD D I+ +Y++W +QDQ
Sbjct: 54 QQVEPVIKGHRLHHYLVNPQIPQ-KFATLADRDAGHISESYLAWEQQDQLLLSWLQSSMS 112
Query: 452 XXXXXTTVGLNSSSAIWSALKTNFASQTTAKVMQYRLQLQMLRKCTMPMREYLNKVKTCC 631
+G SS +W + T F S AK Q R +L+ + + EY+ +++T
Sbjct: 113 KDMLTRVIGCKSSFQLWDKIHTYFHSHMNAKARQLRNELRSTTLDNLSISEYVLRIQTLV 172
Query: 632 DILAAAGEPVSEKDQVLYILSGLGSEYNPVLVSITSRITPCSLMETHALLLSFENRLEIL 811
D L A G+ VS K+ + IL GL EY + I+SR ++ E LLL E+R L
Sbjct: 173 DALTAIGDSVSPKEHLDIILEGLPEEYESTVSLISSRFDLLTIDEVETLLLGHESR---L 229
Query: 812 DNFQISPEG-----TASIXXXXXXXXXXXXXSGNRGRCSPTH------XXXXXXXXXXXX 958
D F+ TA + + P+H
Sbjct: 230 DKFKKKAAASINVTTAVTEPDPSATNPQAHLTHQNNQSGPSHRRGGRTNSRGGRFSNWAG 289
Query: 959 XXXXXXXXXXCQISYRTNHTADKCFYRADLNYVPNSLTVNYVQSNINPQHGGNNQPQGAS 1138
CQ+ +R H A C+YR D YVP+S P + NN Q +
Sbjct: 290 RGRGRFAGYQCQVCHRYGHVASACYYRFDETYVPSSPLE-------APAYPSNN--QHTN 340
Query: 1139 PSAAHNNASGSLISGSQVDLGYDNQWYPDSGASNHVTYDFGNLSIASEFQGDEKVHVGNG 1318
P A +NN WYPDSGASNHVT N+ + F+G +++HVGNG
Sbjct: 341 PGACNNN------------------WYPDSGASNHVTNVSQNIHQFTPFEGPDQIHVGNG 382
Score = 53.9 bits (128), Expect(4) = e-131
Identities = 21/45 (46%), Positives = 33/45 (73%)
Frame = +2
Query: 2411 FRSKPCTFIGYDTHYKGYKVLLPDNKIIITRDVVFDESVIPFANI 2545
FRS+ C F+GY T +KGYK L D ++ I++DVVF+E+ P+ ++
Sbjct: 743 FRSQECVFLGYSTSHKGYKCLAADGRLYISKDVVFNETKFPYKDL 787
Score = 22.3 bits (46), Expect(4) = e-131
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 231 SQLVSVKLTESNYLIWSSKSLQPLL 305
S +S KL NYL+W + ++P++
Sbjct: 37 SHTISEKLDTKNYLLW-CQQVEPVI 60
Score = 227 bits (578), Expect = 5e-57
Identities = 108/181 (59%), Positives = 137/181 (75%)
Frame = +2
Query: 2852 HPMVTRSKSGIYKPKQLFHADLINEEPSCYKQALQVPVWKAAMEKEFSALLKNGTWTLCE 3031
HPM TR+K GI KP+ L EP KQAL P W AAM+ E++ALL N TW+L
Sbjct: 870 HPMTTRAKDGIVKPRLQPTLLLTQVEPKTTKQALSNPTWSAAMQTEYNALLHNNTWSLVP 929
Query: 3032 LPSDRKLIGCKWVFKVKKDASGSIIKHKARLVAKGYTQLMGFDYTETFSPVIKPTTDRVV 3211
LP R IGCKWVF+VK++ +GS+ K+KARLVAKG+ Q GFDY ETFSPVIKP T R++
Sbjct: 930 LPPHRTAIGCKWVFRVKENPNGSVQKYKARLVAKGFNQQFGFDYHETFSPVIKPVTVRLI 989
Query: 3212 LSLAVTHSWPIRQIDIDNAFLNGDIDTELYMEQPPGFEDVRGQHLVCKLHKSLYGLKQAS 3391
L+LA+TH WPI+Q+D++NAFLNG ++ E+YM+QPPGFE ++LVCKLHK++YGLKQA
Sbjct: 990 LTLALTHRWPIQQLDVNNAFLNGTLEEEVYMQQPPGFE-ASDKNLVCKLHKAIYGLKQAP 1048
Query: 3392 R 3394
R
Sbjct: 1049 R 1049
>emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera]
Length = 1402
Score = 299 bits (765), Expect(4) = e-127
Identities = 161/363 (44%), Positives = 208/363 (57%)
Frame = +1
Query: 1321 MKISHIGNSILNSSKTSFLLKNLLHVPHITMNLISVSQFAKDNKVYFEFHPLFCLVKDQA 1500
+ IS+ + L S+ SF LK + HVP I+ NLISV++F DN EFH +KD
Sbjct: 379 LTISNTXFTRLFSNPHSFQLKKVFHVPFISANLISVAKFCSDNNALIEFHSNGFFLKDLH 438
Query: 1501 TCTTLLRGTVKNGLYSFHLSLPICSNPLLRLPSIQLHLLLFFPVFSNKPVVFHSVKMPSL 1680
T L +G ++NGLY F P+ SN I NK +
Sbjct: 439 TKRVLAQGKLENGLYKF----PVISNKKTAYVGITNDSTFQCSNIENKREL--------- 485
Query: 1681 TTWHSMLGHASIEIVKRALNRCNVPYSGNFNENVCSSCLQSKIHKLPFSGSNTLYHEPFQ 1860
WH LGHA+ +IV R ++ CNV G + VCSSC +K H+LP S+ +P +
Sbjct: 486 --WHHRLGHAATDIVTRIMHNCNVS-CGKYKATVCSSCQLAKSHRLPTHLSSFHASKPLE 542
Query: 1861 LIHTDLWGPSPVQSTHGYKYYVSFIDHATRYTWFYLLKAKSDTYQAFINFKALVET*FEK 2040
L++TD+WGP+ V ST G KY++ F+D +RYTW YLL++K F FK VE FE
Sbjct: 543 LVYTDIWGPASVTSTSGAKYFILFVDDYSRYTWLYLLQSKDQALPIFKXFKLQVENQFEA 602
Query: 2041 KIKMVQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKYMHIVEVGLALLAQSH 2220
KIK +Q D GGEF + F Q GI HR SCPY QNG ERK+ H+VE GLALLA +
Sbjct: 603 KIKCLQXDNGGEFRSFMSFLQESGILHRFSCPYNSSQNGRVERKHRHVVETGLALLAHAG 662
Query: 2221 LPMRFWPDAFCSSVYLINRTPSKILHYISPFEALAGNKPDYTSPRAFGCLCYPHLRSYNK 2400
LP++FW AF ++ +LINR PSK+L SP+ AL PDY R FGCLCYP +R YN
Sbjct: 663 LPLKFWSYAFQTATFLINRMPSKVLXNASPYFALFKRNPDYKFLRVFGCLCYPFIRPYNN 722
Query: 2401 HKL 2409
HKL
Sbjct: 723 HKL 725
Score = 160 bits (404), Expect(4) = e-127
Identities = 108/351 (30%), Positives = 165/351 (47%), Gaps = 6/351 (1%)
Frame = +2
Query: 284 QISTAVTGYGLEDFLTGKGLPPPKYAADDCETINPAYISWVRQDQXXXXXXXXXXXXXXX 463
QI + G EDF+ G + P K INPA+++ RQD+
Sbjct: 48 QIDNVIFANGFEDFIDGTSVCPEKELRPG--EINPAFVAXRRQDRTILSWIYSSLTPGIM 105
Query: 464 XTTVGLNSSSAIWSALKTNFASQTTAKVMQYRLQLQMLRKCTMPMREYLNKVKTCCDILA 643
+G NSS + W+AL+ F+S + A++MQ L+ Q +K +M M +Y+ KVK D LA
Sbjct: 106 AQIIGHNSSHSAWNALEKIFSSCSRARIMQLXLEFQSTKKGSMSMIDYIMKVKGAADSLA 165
Query: 644 AAGEPVSEKDQVLYILSGLGSEYNPVLVSITSRITPCSLMETHALLLSFENRLEILDNFQ 823
A GEPVSE+DQ++ +L GLGS+YN V+ +I R SL H++LL+FE RLE + +
Sbjct: 166 AIGEPVSEQDQIMNLLGGLGSDYNAVVTAINIREDKISLEAVHSMLLAFEQRLEQQGSIE 225
Query: 824 ISPEGTASIXXXXXXXXXXXXXSGNRG------RCSPTHXXXXXXXXXXXXXXXXXXXXX 985
P +A+ +G RG +
Sbjct: 226 QLPAMSANYASXSNNRGGGRKYNGGRGPNFMMTNSNFRGRGRGXRYGQSGRQNSSSSERP 285
Query: 986 XCQISYRTNHTADKCFYRADLNYVPNSLTVNYVQSNINPQHGGNNQPQGASPSAAHNNAS 1165
CQ+ + HT C++R D+ + V ++ GN+ A + ++N A
Sbjct: 286 QCQLCGKFGHTVQVCYHRFDITFQSTQNNTTGVSNS------GNSNXMPAMVAXSNNXA- 338
Query: 1166 GSLISGSQVDLGYDNQWYPDSGASNHVTYDFGNLSIASEFQGDEKVHVGNG 1318
D+ WY DSGAS+H+T + NL+ A+ + G +KV +GNG
Sbjct: 339 -------------DDNWYLDSGASHHLTQNVANLTNATPYTGADKVTIGNG 376
Score = 43.9 bits (102), Expect(4) = e-127
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = +2
Query: 2411 FRSKPCTFIGYDTHYKGYKVLLPDN---KIIITRDVVFDESVIPFANIEPSQP 2560
+RS C F+GY H+KGY L DN ++ ++ VVFDE+ PFA S P
Sbjct: 727 YRSLKCVFLGYSLHHKGYLCL--DNLTGRVYVSPHVVFDETQFPFAQNISSSP 777
Score = 27.7 bits (60), Expect(4) = e-127
Identities = 11/48 (22%), Positives = 28/48 (58%)
Frame = +3
Query: 144 MANGGKDSTLDTAISEAAAVAIQPVVHLQSQLVSVKLTESNYLIWSSK 287
M++ S+ + ++++++A P + + + VKL +NY++W S+
Sbjct: 1 MSSTASQSSSSSGSAQSSSMASIPSYQMLNYSLPVKLDRTNYILWRSQ 48
Score = 160 bits (405), Expect = 3e-36
Identities = 83/180 (46%), Positives = 112/180 (62%), Gaps = 1/180 (0%)
Frame = +2
Query: 2858 MVTRSKSGIYKPKQLFHADLIN-EEPSCYKQALQVPVWKAAMEKEFSALLKNGTWTLCEL 3034
+ TRS SGI K K +F+ EP+ KQA++ P W AM E +AL KN TW L +
Sbjct: 856 VTTRSMSGITKRKPIFNLAASKISEPTTLKQAIKDPNWAEAMHTEIAALHKNQTWDLVDP 915
Query: 3035 PSDRKLIGCKWVFKVKKDASGSIIKHKARLVAKGYTQLMGFDYTETFSPVIKPTTDRVVL 3214
P D +IGCKWV+K+K GS+ ++KARLVA+G+ Q G DY ETFSPV+K T R+VL
Sbjct: 916 PKDVNIIGCKWVYKLKYKXDGSVDRYKARLVARGFNQTFGLDYFETFSPVVKAATIRIVL 975
Query: 3215 SLAVTHSWPIRQIDIDNAFLNGDIDTELYMEQPPGFEDVRGQHLVCKLHKSLYGLKQASR 3394
++ +++ W +RQ+D+ YM QPPGF + VCKL K+LYGLKQ+ R
Sbjct: 976 TIXLSYRWELRQLDV-------------YMAQPPGFLHPNHPNKVCKLKKALYGLKQSPR 1022
>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
gi|531389|gb|AAA57005.1| copia-like retrotransposon
Hopscotch polyprotein [Zea mays]
Length = 1439
Score = 321 bits (823), Expect(4) = e-127
Identities = 172/364 (47%), Positives = 233/364 (64%), Gaps = 1/364 (0%)
Frame = +1
Query: 1321 MKISHIGNSILNSSKTSFLLKNLLHVPHITMNLISVSQFAKDNKVYFEFHPLFCLVKDQA 1500
M IS+IGN+I+ +S S L+++LHVP NLISV + DN V+ EFH L+KD+
Sbjct: 360 MTISNIGNAIVPTSSRSLHLRSVLHVPSTHKNLISVHRLTNDNDVFIEFHSSHFLIKDRQ 419
Query: 1501 TCTTLLRGTVKNGLYSFHLSLPICSNPLLRLPSIQLHLLLFFPVFSNKPVVFHSVKMPSL 1680
T LL G ++GLY P+ +P LRL F S ++P L
Sbjct: 420 TKAVLLHGKCRDGLY------PLPPHPDLRLKHN-----------------FSSTRVP-L 455
Query: 1681 TTWHSMLGHASIEIVKRALNRCNVP-YSGNFNENVCSSCLQSKIHKLPFSGSNTLYHEPF 1857
WH LGH S +IV R ++ N+P S N +VC +CLQ+K H+LP++ S + P
Sbjct: 456 EHWHKRLGHPSRDIVHRVISNNNLPCLSNNSTTSVCDACLQAKAHQLPYTISMSQSSAPL 515
Query: 1858 QLIHTDLWGPSPVQSTHGYKYYVSFIDHATRYTWFYLLKAKSDTYQAFINFKALVET*FE 2037
LI +D++GP+ + S YKYYVSFID +++TW YLL+ KSD Y++F F+ LVE F
Sbjct: 516 MLIFSDVFGPA-IDSFGRYKYYVSFIDDYSKFTWIYLLRHKSDVYKSFCEFQHLVERMFG 574
Query: 2038 KKIKMVQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKYMHIVEVGLALLAQS 2217
+KI QSD GGE+ L+ F+T GIHH++SCP+T QQNG AERK+ HIVEVGLALLAQS
Sbjct: 575 RKIIAFQSDWGGEYEKLNAHFKTIGIHHQVSCPHTHQQNGAAERKHRHIVEVGLALLAQS 634
Query: 2218 HLPMRFWPDAFCSSVYLINRTPSKILHYISPFEALAGNKPDYTSPRAFGCLCYPHLRSYN 2397
+P+++W AF ++VYLINRTPSK + + +P L G PDY+S R FGC C+P+LR YN
Sbjct: 635 SMPLKYWDHAFLAAVYLINRTPSKTIAHDTPLHKLTGATPDYSSLRIFGCACWPNLRPYN 694
Query: 2398 KHKL 2409
+HKL
Sbjct: 695 QHKL 698
Score = 131 bits (330), Expect(4) = e-127
Identities = 93/358 (25%), Positives = 156/358 (43%), Gaps = 12/358 (3%)
Frame = +2
Query: 284 QISTAVTGYGLEDFLTGKGLPPPKYAADDCE----TINPAYISWVRQDQXXXXXXXXXXX 451
Q+ A+ L+D LTG + PPK +D + NPAY W+ +DQ
Sbjct: 35 QVLPAIRAAQLDDILTGVEICPPKTISDASDRTVTVANPAYGRWIARDQAVLGYLLSSLS 94
Query: 452 XXXXXTTVGLNSSSAIWSALKTNFASQTTAKVMQYRLQLQMLRKCTMPMREYLNKVKTCC 631
+ V ++S+++W+ L ++S + A+ + R+ L +K + EY K++
Sbjct: 95 REVLSSVVNCSTSASVWTTLSEMYSSHSRARKVNTRIALATTKKGASSVAEYFAKMRGFA 154
Query: 632 DILAAAGEPVSEKDQVLYILSGLGSEYNPVLVSITSRITPCSLMETHALLLSFENRLEIL 811
D L AAG+P+ +++ V ++L+GL ++NP++ ++ +R P + + + LLS+ENR+ +
Sbjct: 155 DELGAAGKPLDDEEFVSFLLTGLDEDFNPLVTAVVARSDPITPGDLYTQLLSYENRMHLQ 214
Query: 812 DN----FQISPEGTASIXXXXXXXXXXXXXSGNRGR-CSPTH---XXXXXXXXXXXXXXX 967
Q S + S RGR P+
Sbjct: 215 TGSSSLMQSSANARSPGRGMSWGRSGGRGFSRGRGRGRGPSRGGFQSFGRGNNYSGATDA 274
Query: 968 XXXXXXXCQISYRTNHTADKCFYRADLNYVPNSLTVNYVQSNINPQHGGNNQPQGASPSA 1147
CQ+ R HTA C+YR D NYVP+ + N SA
Sbjct: 275 DTSSRPRCQVCSRVGHTALNCWYRFDENYVPDQRSAN---------------------SA 313
Query: 1148 AHNNASGSLISGSQVDLGYDNQWYPDSGASNHVTYDFGNLSIASEFQGDEKVHVGNGT 1321
AH N GS V WY D+GA++H+T D L++ ++ G +++ NGT
Sbjct: 314 AHQN-------GSNV------PWYTDTGATDHITGDLDRLTMHDKYTGTDQIIAANGT 358
Score = 51.2 bits (121), Expect(4) = e-127
Identities = 24/46 (52%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Frame = +2
Query: 2411 FRSKPCTFIGYDTHYKGYKVL-LPDNKIIITRDVVFDESVIPFANI 2545
FRS C F+GY +KG+K L + +I I+RDVVFDE V PFA++
Sbjct: 700 FRSTRCVFLGYSNMHKGFKCLDISTGRIYISRDVVFDEHVFPFASL 745
Score = 25.8 bits (55), Expect(4) = e-127
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 240 VSVKLTESNYLIWSSKSL 293
VS KLT+ NYL+W ++ L
Sbjct: 20 VSEKLTKGNYLLWKAQVL 37
Score = 186 bits (471), Expect = 4e-44
Identities = 99/184 (53%), Positives = 120/184 (65%), Gaps = 7/184 (3%)
Frame = +2
Query: 2864 TRSKSGIYKPKQLF-------HADLINEEPSCYKQALQVPVWKAAMEKEFSALLKNGTWT 3022
TR + GI KPKQ +A EPS +AL P W+AAME EF AL KN TWT
Sbjct: 896 TRLQHGISKPKQFTDGTVRYGNAAARITEPSSVSEALADPQWRAAMEAEFQALQKNNTWT 955
Query: 3023 LCELPSDRKLIGCKWVFKVKKDASGSIIKHKARLVAKGYTQLMGFDYTETFSPVIKPTTD 3202
L R LI CKWVFKVK +A GSI + KARLVAKG+ Q G DY +TFSPV+K +T
Sbjct: 956 LVPPDRTRNLIDCKWVFKVKYNADGSIDRLKARLVAKGFKQQYGIDYDDTFSPVVKHSTI 1015
Query: 3203 RVVLSLAVTHSWPIRQIDIDNAFLNGDIDTELYMEQPPGFEDVRGQHLVCKLHKSLYGLK 3382
R+VLSLAV+ W +RQ+D+ NAFL+G ++ +YM+QPPGF D + C L KSLYGLK
Sbjct: 1016 RLVLSLAVSQKWSLRQLDVQNAFLHGILEETVYMKQPPGFADTTHPNYHCHLQKSLYGLK 1075
Query: 3383 QASR 3394
Q R
Sbjct: 1076 QRPR 1079
>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108708884|gb|ABF96679.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1437
Score = 315 bits (808), Expect(4) = e-126
Identities = 164/364 (45%), Positives = 224/364 (61%), Gaps = 1/364 (0%)
Frame = +1
Query: 1321 MKISHIGNSILNSSKTSFLLKNLLHVPHITMNLISVSQFAKDNKVYFEFHPLFCLVKDQA 1500
M+ISHIGNS++ + + LK++L+VP NL+S + DN + E + F +KD A
Sbjct: 356 MEISHIGNSVVKTPSRNLHLKDVLYVPKANKNLVSAYKLTSDNLAFIELYRKFFFIKDLA 415
Query: 1501 TCTTLLRGTVKNGLYSFHLSLPICSNPLLRLPSIQLHLLLFFPVFSNKPVVFHSVKMPSL 1680
TLLRG GLY+ LPS H ++ + V PS
Sbjct: 416 MRRTLLRGRCHKGLYA--------------LPSPSSH--------HHQVKQVYGVTKPSF 453
Query: 1681 TTWHSMLGHASIEIVKRALNRCNVPYSGNFNE-NVCSSCLQSKIHKLPFSGSNTLYHEPF 1857
WHS LGH S +V++ + N+P + +VC +C ++K H+L F S + P
Sbjct: 454 ERWHSRLGHPSYTVVEKVIKSQNLPCLDVSEQVSVCDACQKAKSHQLSFPKSTSESKYPL 513
Query: 1858 QLIHTDLWGPSPVQSTHGYKYYVSFIDHATRYTWFYLLKAKSDTYQAFINFKALVET*FE 2037
+L+ +D+WGP+P QS KYYVSFID +++TW YLLK KS+ + F F++LVE F
Sbjct: 514 ELVFSDVWGPAP-QSVGNNKYYVSFIDDYSKFTWIYLLKYKSEVFDKFHEFQSLVERLFN 572
Query: 2038 KKIKMVQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKYMHIVEVGLALLAQS 2217
+KI +Q+D GGE+ L FF GI H +SCP+T QQNG AERK+ HIVEVGLALLA S
Sbjct: 573 RKIVAMQTDWGGEYQKLHSFFNKVGITHHVSCPHTHQQNGSAERKHRHIVEVGLALLAYS 632
Query: 2218 HLPMRFWPDAFCSSVYLINRTPSKILHYISPFEALAGNKPDYTSPRAFGCLCYPHLRSYN 2397
+P++FW +AF S+VYLINRTPS++LH +SP E L G+KPDY + R FGC C+P+LR YN
Sbjct: 633 SMPLKFWGEAFLSAVYLINRTPSRVLHDVSPLERLLGHKPDYNALRVFGCACWPNLRPYN 692
Query: 2398 KHKL 2409
KHKL
Sbjct: 693 KHKL 696
Score = 134 bits (337), Expect(4) = e-126
Identities = 93/356 (26%), Positives = 143/356 (40%), Gaps = 11/356 (3%)
Frame = +2
Query: 284 QISTAVTGYGLEDFLTGKGLPPP-----KYAADDCETINPAYISWVRQDQXXXXXXXXXX 448
QI + G LE LTG PP K + NP Y WV DQ
Sbjct: 33 QILATIRGARLEGHLTGDDQPPAPILRRKEGEKEVVVSNPEYEEWVATDQQVLAYLLSSM 92
Query: 449 XXXXXXTTVGLNSSSAIWSALKTNFASQTTAKVMQYRLQLQMLRKCTMPMREYLNKVKTC 628
++++ WS ++ F S T A+ + RL L L+K M + Y+ K++
Sbjct: 93 TKDLLVQVATCRTAASAWSMIQGMFGSMTRARTINTRLSLSTLQKGDMNITTYVGKMRAL 152
Query: 629 CDILAAAGEPVSEKDQVLYILSGLGSEYNPVLVSITSRITPCSLMETHALLLSFENRL-E 805
D L A G+PV + + + YI +GL E+ PV+ +I R P ++ ET+A L+SFE RL
Sbjct: 153 ADDLMAVGKPVDDDELIGYIFAGLDDEFEPVISTIVGRPDPVTIGETYAQLISFEQRLAH 212
Query: 806 ILDNFQISPEGTASIXXXXXXXXXXXXXSGNRGRCSPTH-----XXXXXXXXXXXXXXXX 970
Q S + NRGR +P++
Sbjct: 213 RRSGDQSSVNSASRSRGQPQRGGSRSGGDSNRGRGAPSNGANRGRGRGNPSGGRANVGGG 272
Query: 971 XXXXXXCQISYRTNHTADKCFYRADLNYVPNSLTVNYVQSNINPQHGGNNQPQGASPSAA 1150
CQ+ Y+ HT C+YR D N+VP+
Sbjct: 273 TDNRPKCQLCYKRGHTVCDCWYRYDENFVPD----------------------------- 303
Query: 1151 HNNASGSLISGSQVDLGYDNQWYPDSGASNHVTYDFGNLSIASEFQGDEKVHVGNG 1318
+G+ V G D WY D+GA++HVT + L++ ++ G+++VH +G
Sbjct: 304 ------ERFAGTAVSYGVDTNWYLDTGATDHVTGELDKLTVRDKYHGNDQVHTASG 353
Score = 55.5 bits (132), Expect(4) = e-126
Identities = 25/49 (51%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Frame = +2
Query: 2411 FRSKPCTFIGYDTHYKGYKVLLPD-NKIIITRDVVFDESVIPFANIEPS 2554
FRS CTF+GY T +KG+K L P ++ I+RDVVFDE+ PF + P+
Sbjct: 698 FRSTTCTFLGYSTLHKGFKCLDPSTGRVYISRDVVFDETQFPFTKLHPN 746
Score = 22.7 bits (47), Expect(4) = e-126
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 225 LQSQLVSVKLTESNYLIWSSKSL 293
L Q VS KL +SN+ +W ++ L
Sbjct: 13 LVGQPVSEKLGKSNHAVWKAQIL 35
Score = 175 bits (444), Expect = 7e-41
Identities = 88/183 (48%), Positives = 119/183 (65%), Gaps = 6/183 (3%)
Frame = +2
Query: 2864 TRSKSGIYKPKQLFHADL------INEEPSCYKQALQVPVWKAAMEKEFSALLKNGTWTL 3025
TR +SGI K K + EP + ALQ WK AM+ E+ AL+KN TW L
Sbjct: 895 TRLQSGIRKEKVYTDGTVKWGMLTSTGEPENLQDALQNNNWKCAMDAEYMALIKNNTWHL 954
Query: 3026 CELPSDRKLIGCKWVFKVKKDASGSIIKHKARLVAKGYTQLMGFDYTETFSPVIKPTTDR 3205
R +I CKWV+K+K+ GS+ ++KARLVAKG+ Q G DY +TFSPV+K T R
Sbjct: 955 VPPQQGRNVIDCKWVYKIKRKQDGSLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIR 1014
Query: 3206 VVLSLAVTHSWPIRQIDIDNAFLNGDIDTELYMEQPPGFEDVRGQHLVCKLHKSLYGLKQ 3385
++LS+AV+ W +RQ+D+ NAFL+G ++ E+YM+QPPG+E+ VCKL K+LYGLKQ
Sbjct: 1015 IILSIAVSRGWCLRQLDVQNAFLHGVLEEEVYMKQPPGYENPSTPDYVCKLDKALYGLKQ 1074
Query: 3386 ASR 3394
A R
Sbjct: 1075 APR 1077
>emb|CAN68489.1| hypothetical protein VITISV_037543 [Vitis vinifera]
Length = 1449
Score = 325 bits (833), Expect(4) = e-126
Identities = 164/363 (45%), Positives = 224/363 (61%)
Frame = +1
Query: 1321 MKISHIGNSILNSSKTSFLLKNLLHVPHITMNLISVSQFAKDNKVYFEFHPLFCLVKDQA 1500
++I H G + SS +F L+ +LHVP I NLISVSQF DN +FEFHP F VKDQ
Sbjct: 415 LRILHTGTTFFPSSSKTFQLRQVLHVPDIATNLISVSQFCADNNTFFEFHPRFFFVKDQV 474
Query: 1501 TCTTLLRGTVKNGLYSFHLSLPICSNPLLRLPSIQLHLLLFFPVFSNKPVVFHSVKMPSL 1680
T LL+G++++GLY F P +PS + + SN + +
Sbjct: 475 TKKILLQGSLEHGLYRF---------PARFVPSPAAFVSSSYDRSSNLSLT------TTT 519
Query: 1681 TTWHSMLGHASIEIVKRALNRCNVPYSGNFNENVCSSCLQSKIHKLPFSGSNTLYHEPFQ 1860
T WHS LGH + I+K L CN+ + + N NVC +C +K HKLPF+ + P
Sbjct: 520 TLWHSRLGHPADNILKHILTSCNISHQCHKN-NVCCACQFAKSHKLPFNVXVSRASHPLA 578
Query: 1861 LIHTDLWGPSPVQSTHGYKYYVSFIDHATRYTWFYLLKAKSDTYQAFINFKALVET*FEK 2040
L+H DLWGP + ST G +Y++ F+D +R++W Y L +K FI FK+LVE F
Sbjct: 579 LLHADLWGPXSIPSTTGARYFILFVDDFSRFSWIYPLHSKDQALSVFIKFKSLVENQFNS 638
Query: 2041 KIKMVQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKYMHIVEVGLALLAQSH 2220
+I+ ++SD GGEF A S + THGI + SCPYTP+QNG AERK HI+E GLALLA +
Sbjct: 639 RIQCLRSDNGGEFKAFSSYLATHGIKSQFSCPYTPEQNGRAERKLRHIIETGLALLATAS 698
Query: 2221 LPMRFWPDAFCSSVYLINRTPSKILHYISPFEALAGNKPDYTSPRAFGCLCYPHLRSYNK 2400
LP +FW AF ++++LINR P+K+L+Y SPF+ L G P+Y + FGCLCYP++R YNK
Sbjct: 699 LPFKFWLYAFHTAIFLINRLPTKVLNYQSPFQILFGKSPNYHIFKIFGCLCYPYIRPYNK 758
Query: 2401 HKL 2409
+KL
Sbjct: 759 NKL 761
Score = 131 bits (330), Expect(4) = e-126
Identities = 98/347 (28%), Positives = 158/347 (45%), Gaps = 2/347 (0%)
Frame = +2
Query: 284 QISTAVTGYGLEDFLTGKGLPPPKYAADDCETINPAYISWVRQDQXXXXXXXXXXXXXXX 463
Q+ V G ED + G + PP+ + ET NP ++ W R D+
Sbjct: 112 QMENVVFANGFEDHIEGLKICPPQKTSSG-ET-NPDFVMWRRFDRMILSWIYSSLTPEIM 169
Query: 464 XTTVGLNSSSAIWSALKTNFASQTTAKVMQYRLQLQMLRKCTMPMREYLNKVKTCCDILA 643
VG SS A W AL+ F + + A+VMQ RL+ Q RK ++ M EY+ K+K+ D LA
Sbjct: 170 GQIVGYQSSHAXWFALEXXFXASSRARVMQLRLEFQTTRKGSLTMMEYILKLKSLADNLA 229
Query: 644 AAGEPVSEKDQVLYILSGLGSEYNPVLVSITSR-ITPCSLMETHALLLSFEN-RLEILDN 817
A GEPV+++DQ+L +L GLG++YN ++ S+T+R S+ E + + + + + +N
Sbjct: 230 AIGEPVTDRDQILQLLGGLGADYNSIVASLTAREDEDNSVAEDNVISANLATPQYQHFNN 289
Query: 818 FQISPEGTASIXXXXXXXXXXXXXSGNRGRCSPTHXXXXXXXXXXXXXXXXXXXXXXCQI 997
+ S + S +G R + S CQ+
Sbjct: 290 KRSSGQNRQS------GFNTRRGTNGGRSQSS--------------------QHRPQCQL 323
Query: 998 SYRTNHTADKCFYRADLNYVPNSLTVNYVQSNINPQHGGNNQPQGASPSAAHNNASGSLI 1177
+ HT +C++R D+N+ + ++ VQ+N P Q ASPS
Sbjct: 324 CGKFGHTVVRCYHRFDINFQGYNPNMDTVQTN-KPNAKNQVQAMMASPSTIS-------- 374
Query: 1178 SGSQVDLGYDNQWYPDSGASNHVTYDFGNLSIASEFQGDEKVHVGNG 1318
D W+ D+GA++H++ LS + G++KV VGNG
Sbjct: 375 ---------DEAWFFDTGATHHLSQSIDPLSDVQPYMGNDKVIVGNG 412
Score = 45.8 bits (107), Expect(4) = e-126
Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = +2
Query: 2411 FRSKPCTFIGYDTHYKGYKVLLP-DNKIIITRDVVFDESVIPF 2536
+RS C F+GY +++KGY L P ++ +TR VVF E+V PF
Sbjct: 763 YRSSQCVFLGYSSNHKGYMCLNPLTGRLYVTRHVVFHETVFPF 805
Score = 22.7 bits (47), Expect(4) = e-126
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +3
Query: 126 FHQASLMANGGKDSTLDTAISEAAAVAIQPVVHLQSQLVSVKLTESNYLIWSSK 287
F +S ++G + TL + S A +Q + H + +KL +NY++W ++
Sbjct: 65 FMMSSTQSSGLQAGTLPS--STGATQTMQMLNHA----LPIKLDRNNYILWRTQ 112
Score = 140 bits (353), Expect = 5e-30
Identities = 66/131 (50%), Positives = 95/131 (72%)
Frame = +2
Query: 2849 QHPMVTRSKSGIYKPKQLFHADLINEEPSCYKQALQVPVWKAAMEKEFSALLKNGTWTLC 3028
QHPMVTR+K+GI K K F + + EP+ + QA++ W AMEKEFSAL +N TW L
Sbjct: 878 QHPMVTRAKNGISKKKVYFSSHI--SEPTTFTQAVKDSNWVLAMEKEFSALQRNNTWHLV 935
Query: 3029 ELPSDRKLIGCKWVFKVKKDASGSIIKHKARLVAKGYTQLMGFDYTETFSPVIKPTTDRV 3208
PS+ +IGCKWV+K+K G++ ++KARLVA+G+TQ +G DY ETFSPV+K + R+
Sbjct: 936 PPPSNGNIIGCKWVYKLKYKPDGTVDRYKARLVAQGFTQTLGLDYFETFSPVVKASXIRI 995
Query: 3209 VLSLAVTHSWP 3241
+L++A++ +WP
Sbjct: 996 ILAVALSFNWP 1006
>gb|KYP61342.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1358
Score = 321 bits (822), Expect(4) = e-126
Identities = 174/367 (47%), Positives = 219/367 (59%), Gaps = 4/367 (1%)
Frame = +1
Query: 1321 MKISHIGNSILNS---SKTSFLLKNLLHVPHITMNLISVSQFAKDNKVYFEFHPLFCLVK 1491
++I+ G SI S S+ F L NLLHVP IT NL+SVS+FAKDN V+FEFH CLVK
Sbjct: 337 LQINGSGTSIFISPINSQFKFHLNNLLHVPLITKNLLSVSKFAKDNCVFFEFHANHCLVK 396
Query: 1492 DQATCTTLLRGTV-KNGLYSFHLSLPICSNPLLRLPSIQLHLLLFFPVFSNKPVVFHSVK 1668
Q T LL+G V +GLYSF P ++L +L F N V
Sbjct: 397 SQDTNEVLLQGVVGADGLYSF--------------PHLKLQVLDSFNFNKNSDV------ 436
Query: 1669 MPSLTTWHSMLGHASIEIVKRALNRCNVPYSGNFNENVCSSCLQSKIHKLPFSGSNTLYH 1848
S T WH+ LGH + ++K L +CN+ S CSSC K +LP S S T+Y
Sbjct: 437 SSSSTMWHTRLGHPNSHVLKLVLTQCNLLSSNTHVTEFCSSCCVGKSRRLPSSASQTIYS 496
Query: 1849 EPFQLIHTDLWGPSPVQSTHGYKYYVSFIDHATRYTWFYLLKAKSDTYQAFINFKALVET 2028
P +I TDLWGPS + S GY YYV+FID ++YTW Y LK+K++T F FKA+ E
Sbjct: 497 APLDVIFTDLWGPSHITSFSGYLYYVAFIDAFSKYTWIYPLKSKAETLSVFQQFKAMAEL 556
Query: 2029 *FEKKIKMVQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKYMHIVEVGLALL 2208
F KIK VQSD GGE+ A + F T+GI HR+ CP+T QNG+ ERK+ HIVE+GL LL
Sbjct: 557 QFNTKIKSVQSDWGGEYRAFTSFLATNGIQHRVICPHTHHQNGVVERKHRHIVEIGLTLL 616
Query: 2209 AQSHLPMRFWPDAFCSSVYLINRTPSKILHYISPFEALAGNKPDYTSPRAFGCLCYPHLR 2388
+ LP++FW AF ++VYLINR PS L++ PF L PDY R FGC C+P LR
Sbjct: 617 HHASLPLKFWDFAFTTAVYLINRLPSAALNFNVPFTTLFNKSPDYKFLRTFGCACFPFLR 676
Query: 2389 SYNKHKL 2409
Y HKL
Sbjct: 677 PYASHKL 683
Score = 132 bits (333), Expect(4) = e-126
Identities = 99/350 (28%), Positives = 142/350 (40%), Gaps = 4/350 (1%)
Frame = +2
Query: 281 QQISTAVTGYGLEDFLTGKGLPPPKYAAD---DCETINPAYISWVRQDQXXXXXXXXXXX 451
QQI + + L+ F+ +PP +Y D D + +NPAY +W QDQ
Sbjct: 32 QQIEPVIKSHKLQRFVVNPQIPP-RYLTDADRDSDIVNPAYETWEVQDQMLLTWLQSTLS 90
Query: 452 XXXXXTTVGLNSSSAIWSALKTNFASQTTAKVMQYRLQLQMLRKCTMPMREYLNKVKTCC 631
+G S +W + F +QT A+ Q R L+ MR++L ++KT
Sbjct: 91 KSILSRVIGSVHSYQVWDKVHEYFHTQTKARARQLRTDLRSTTLDGQSMRDFLTQIKTIA 150
Query: 632 DILAAAGEPVSEKDQVLYILSGLGSEYNPVLVSITSRITPCSLMETHALLLSFENRLEIL 811
D LA G PVS ++ V +L GL EY PV+ I S+ + E ALLL+ E+R
Sbjct: 151 DELAGVGSPVSLEEYVDAVLEGLPQEYAPVVSVIESKFVTPPIAEVEALLLAHESRANRF 210
Query: 812 DNFQISPEGTASIXXXXXXXXXXXXXSGNRGRCSPTHXXXXXXXXXXXXXXXXXXXXXXC 991
SP + + SG RG C
Sbjct: 211 RKQSFSP--SINYTQGYSRGSVSGGHSGRRG------------GRGSGRGRGGRFANFQC 256
Query: 992 QISYRTNHTADKCFYRADLNYVP-NSLTVNYVQSNINPQHGGNNQPQGASPSAAHNNASG 1168
QI ++ HTA+ CFYRAD+NY P SL + V + P
Sbjct: 257 QICFKYGHTANVCFYRADVNYQPAESLVLAMVANTSQP---------------------- 294
Query: 1169 SLISGSQVDLGYDNQWYPDSGASNHVTYDFGNLSIASEFQGDEKVHVGNG 1318
G ++ W PDSGAS HVT + N+ F G +++ +GNG
Sbjct: 295 ----------GANSSWIPDSGASFHVTGEPQNIHQLEHFDGPDQIFIGNG 334
Score = 49.3 bits (116), Expect(4) = e-126
Identities = 21/49 (42%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Frame = +2
Query: 2411 FRSKPCTFIGYDTHYKGYKVLLPDNKIIITRDVVFDESVIPFANI-EPS 2554
FRS+ C F+GY +KGYK L +I I++DV+F+E P+ ++ +PS
Sbjct: 685 FRSQECVFLGYSNSHKGYKCLSSSGRIYISKDVIFNEHRFPYTDLFQPS 733
Score = 22.3 bits (46), Expect(4) = e-126
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 213 PVVHLQSQLVSVKLTESNYLIWSSKSLQPLL 305
P S ++ KL +SNYL W + ++P++
Sbjct: 9 PFSQFFSNSIAEKLDDSNYLHW-RQQIEPVI 38
Score = 213 bits (543), Expect = 8e-53
Identities = 105/181 (58%), Positives = 137/181 (75%)
Frame = +2
Query: 2852 HPMVTRSKSGIYKPKQLFHADLINEEPSCYKQALQVPVWKAAMEKEFSALLKNGTWTLCE 3031
HPM TRSKSG + P+ L + EP KQAL P W +AM++E++AL+ N TW L
Sbjct: 818 HPMQTRSKSGFHNPRIHPSLFLAHSEPKTVKQALADPNWFSAMQQEYNALMLNHTWDLVS 877
Query: 3032 LPSDRKLIGCKWVFKVKKDASGSIIKHKARLVAKGYTQLMGFDYTETFSPVIKPTTDRVV 3211
LPSDRK +GCKWVF+VK++A GSI K KARLVAKG+ Q+ GFD+ ETFSPVIKP T R++
Sbjct: 878 LPSDRKAVGCKWVFRVKENADGSIDKLKARLVAKGFHQVHGFDFHETFSPVIKPITIRII 937
Query: 3212 LSLAVTHSWPIRQIDIDNAFLNGDIDTELYMEQPPGFEDVRGQHLVCKLHKSLYGLKQAS 3391
L+LA+T++W + Q+D++NAFLNG ++ +YM QPPGFE + LVCKL+K+LYGLKQA
Sbjct: 938 LTLALTNNWNLFQLDVNNAFLNGTLEETIYMVQPPGFE-AGDKSLVCKLNKALYGLKQAP 996
Query: 3392 R 3394
R
Sbjct: 997 R 997
>gb|KHN36156.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Glycine soja]
Length = 1417
Score = 325 bits (833), Expect(4) = e-121
Identities = 166/359 (46%), Positives = 219/359 (61%), Gaps = 7/359 (1%)
Frame = +1
Query: 1354 NSSKTSFLLKNLLHVPHITMNLISVSQFAKDNKVYFEFHPLFCLVKDQATCTTLLRGTV- 1530
N LK+LLHVP+I+ NL+SVS+FA+DN V FEFHP C VK Q + LL GTV
Sbjct: 382 NEPNVKLTLKDLLHVPNISKNLLSVSKFAQDNNVIFEFHPYHCFVKYQDSKQVLLEGTVG 441
Query: 1531 KNGLYSFH-LSLPICSNPLLRLPSIQLHLLLFFPVFSNKPVVFHSVKMPS----LTTWHS 1695
+GLY F S S + F VF+N ++V + WH
Sbjct: 442 ADGLYQFKPFKFLTNSGAASNSDSSSMSSSSQFSVFNNPVNCNNTVSVMQNGNVFQMWHL 501
Query: 1696 MLGHASIEIVKRALNRCNVPYSGNFNENVCSSCLQSKIHKLPFSGSNTLYHEPFQLIHTD 1875
LGHA VK LN CN+P+S C+ C K H+L SNT+Y +PF++IH D
Sbjct: 502 RLGHAHTSAVKNILNLCNIPFSNKTATLPCTFCCMGKSHRLHSPLSNTVYTKPFEVIHCD 561
Query: 1876 LWGPSPVQSTHGYKYYVSFIDHATRYTWFYLLKAKSDTYQAFINFKALVET*FEKKIKMV 2055
LWGP+P S +GY YY++F+D T++TW Y LKAKSD +AF FKAL++ F+ IK +
Sbjct: 562 LWGPAPFVSYYGYSYYITFVDTYTKFTWIYFLKAKSDALKAFTQFKALIQNQFQASIKAI 621
Query: 2056 QSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKYMHIVEVGLALLAQSHLPMRF 2235
QSD GGEF A + GI HR++CP+T QNG ERK+ HIVE+GL LL+ + LP++F
Sbjct: 622 QSDWGGEFRAFTALLNELGIQHRLTCPHTSHQNGTVERKHRHIVEMGLTLLSHAALPLKF 681
Query: 2236 WPDAFCSSVYLINRTPSKILH-YISPFEALAGNKPDYTSPRAFGCLCYPHLRSYNKHKL 2409
W +F +VYLINR PS + + SP+ AL ++PDY+ + FGCLC+PHLR YN HKL
Sbjct: 682 WDHSFTQAVYLINRLPSSAIPLFQSPYHALHQSQPDYSQIKVFGCLCFPHLRPYNNHKL 740
Score = 117 bits (294), Expect(4) = e-121
Identities = 97/364 (26%), Positives = 155/364 (42%), Gaps = 18/364 (4%)
Frame = +2
Query: 281 QQISTAVTGYGLEDFLTGKGLPPPKYAADDCET-INP-AYISWVRQDQXXXXXXXXXXXX 454
QQ++ +T + L F+ +P + +DC IN Y W+ +DQ
Sbjct: 15 QQVNGVITAHNLHRFVVNPQIPLQFASIEDCALGINSDEYQQWLIKDQTLFTWLLSTLSD 74
Query: 455 XXXXTTVGLNSSSAIWSALKTNFASQTTAKVMQYRLQLQMLRKCTMPMREYLNKVKTCCD 634
+ + +W + F S ++ Q R +L+ +K + + EYL ++K+ +
Sbjct: 75 GVLPRVLSCRHAHEVWDKIHKYFNSVLKSRARQLRSELKNTKKLSRSVNEYLLRIKSIVN 134
Query: 635 ILAAAGEPVSEKDQVLYILSGLGSEYNPVLVSITSRITPCSLMETHALLLSFENRLEILD 814
L A G+ VSE++QV IL GL E+N ++ + SR ++ + ALLL E + E
Sbjct: 135 SLVAVGDMVSEQEQVDSILEGLPEEFNSFVMMVYSRFDTPTVEDVEALLLLQEAQFEKFK 194
Query: 815 NFQISPEGTASI-------------XXXXXXXXXXXXXSGNRGRCSPTHXXXXXXXXXXX 955
SP +A++ + NRGR
Sbjct: 195 QELTSPSVSANVAHTETNASDSNSEHESQELGTEHYNVNANRGR-----GRGKGRGRGRG 249
Query: 956 XXXXXXXXXXXCQISYRTNHTADKCFYRADLNYVPNSLTVNYVQSNINPQHGGNNQPQGA 1135
CQI + NH A C+YR Y P ++ N S Q G +N+PQ
Sbjct: 250 KGQAQNQGKVKCQICAKPNHDAINCWYR----YDPQAMNQN---SRGGYQVGPSNRPQNF 302
Query: 1136 SP---SAAHNNASGSLISGSQVDLGYDNQWYPDSGASNHVTYDFGNLSIASEFQGDEKVH 1306
+P AH A + +D + WYPDSGAS+H+TY+ NLS +S + G ++V
Sbjct: 303 NPYMRPTAH-LAMPQPYAMPNMDQFSNGAWYPDSGASHHLTYNPNNLSYSSPYTGQDQVV 361
Query: 1307 VGNG 1318
+GNG
Sbjct: 362 MGNG 365
Score = 44.3 bits (103), Expect(4) = e-121
Identities = 17/45 (37%), Positives = 29/45 (64%)
Frame = +2
Query: 2411 FRSKPCTFIGYDTHYKGYKVLLPDNKIIITRDVVFDESVIPFANI 2545
+RS PC ++G +KG+K L +I I++DV+F ES P+ ++
Sbjct: 742 YRSSPCVYLGVSPQHKGHKCLDATGRIYISKDVIFHESQFPYLSL 786
Score = 23.5 bits (49), Expect(4) = e-121
Identities = 7/16 (43%), Positives = 13/16 (81%)
Frame = +3
Query: 240 VSVKLTESNYLIWSSK 287
+++KL E N+L+WS +
Sbjct: 1 LTIKLDEKNFLLWSQQ 16
Score = 213 bits (542), Expect = 1e-52
Identities = 107/181 (59%), Positives = 132/181 (72%)
Frame = +2
Query: 2852 HPMVTRSKSGIYKPKQLFHADLINEEPSCYKQALQVPVWKAAMEKEFSALLKNGTWTLCE 3031
HPM+TR+K+G KPK +F A L EP K AL P W AM+ E+ AL+ N TWTL
Sbjct: 890 HPMITRAKTGNLKPK-VFVAAL---EPKSVKSALNDPAWLQAMQAEYKALMDNQTWTLVP 945
Query: 3032 LPSDRKLIGCKWVFKVKKDASGSIIKHKARLVAKGYTQLMGFDYTETFSPVIKPTTDRVV 3211
LP RK IGCKW+F+VK++ G++ K KARLVAKG+ Q GFD+TETFSPVIKP T R++
Sbjct: 946 LPQHRKAIGCKWIFRVKENPDGTVNKFKARLVAKGFLQTAGFDFTETFSPVIKPITIRII 1005
Query: 3212 LSLAVTHSWPIRQIDIDNAFLNGDIDTELYMEQPPGFEDVRGQHLVCKLHKSLYGLKQAS 3391
L+LAVT W ++QID++NAFLNG + E+YM QP GFE + LVCKLHKSLYGLKQA
Sbjct: 1006 LTLAVTFKWSVQQIDVNNAFLNGILQEEVYMTQPAGFE-ASDKSLVCKLHKSLYGLKQAP 1064
Query: 3392 R 3394
R
Sbjct: 1065 R 1065
>gb|KHN22040.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Glycine soja]
Length = 1417
Score = 326 bits (835), Expect(4) = e-121
Identities = 167/362 (46%), Positives = 220/362 (60%), Gaps = 7/362 (1%)
Frame = +1
Query: 1354 NSSKTSFLLKNLLHVPHITMNLISVSQFAKDNKVYFEFHPLFCLVKDQATCTTLLRGTV- 1530
N LK+LLHVP+I+ NL+SVS+FA+DN V FEFHP C VK Q + LL GTV
Sbjct: 382 NEPNVKLTLKDLLHVPNISKNLLSVSKFAQDNNVIFEFHPYHCFVKYQDSKQVLLEGTVG 441
Query: 1531 KNGLYSFH-LSLPICSNPLLRLPSIQLHLLLFFPVFSNKPVVFHSVKMPS----LTTWHS 1695
+GLY F S S + F VF+N ++V + WH
Sbjct: 442 ADGLYQFKPFKFLTNSGAASNSDSSSMSSSSQFSVFNNPVNCNNTVSVMQNGNVFQMWHL 501
Query: 1696 MLGHASIEIVKRALNRCNVPYSGNFNENVCSSCLQSKIHKLPFSGSNTLYHEPFQLIHTD 1875
LGHA VK LN CN+P+S C+ C K H+L SNT+Y +PF++IH D
Sbjct: 502 RLGHAHTSAVKNILNLCNIPFSNKTATLPCTFCCMGKSHRLHSPLSNTVYTKPFEVIHCD 561
Query: 1876 LWGPSPVQSTHGYKYYVSFIDHATRYTWFYLLKAKSDTYQAFINFKALVET*FEKKIKMV 2055
LWGP+P S +GY YY++F+D T++TW Y LKAKSD +AF FKAL++ F+ IK +
Sbjct: 562 LWGPAPFVSYYGYSYYITFVDTYTKFTWIYFLKAKSDALKAFTQFKALIQNQFQASIKAI 621
Query: 2056 QSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKYMHIVEVGLALLAQSHLPMRF 2235
QSD GGEF A + GI HR++CP+T QNG ERK+ HIVE+GL LL+ + LP++F
Sbjct: 622 QSDWGGEFRAFTALLNELGIQHRLTCPHTSHQNGTVERKHRHIVEMGLTLLSHADLPLKF 681
Query: 2236 WPDAFCSSVYLINRTPSKILH-YISPFEALAGNKPDYTSPRAFGCLCYPHLRSYNKHKLI 2412
W +F +VYLINR PS + + SP+ AL ++PDY+ + FGCLC+PHLR YN HKL
Sbjct: 682 WDHSFTQAVYLINRLPSSAIPLFQSPYHALHQSQPDYSQIKVFGCLCFPHLRPYNNHKLQ 741
Query: 2413 QK 2418
K
Sbjct: 742 YK 743
Score = 117 bits (294), Expect(4) = e-121
Identities = 97/364 (26%), Positives = 155/364 (42%), Gaps = 18/364 (4%)
Frame = +2
Query: 281 QQISTAVTGYGLEDFLTGKGLPPPKYAADDCET-INP-AYISWVRQDQXXXXXXXXXXXX 454
QQ++ +T + L F+ +P + +DC IN Y W+ +DQ
Sbjct: 15 QQVNGVITAHNLHRFVVNPQIPLQFASIEDCALGINSDEYQQWLIKDQTLFTWLLSTLSD 74
Query: 455 XXXXTTVGLNSSSAIWSALKTNFASQTTAKVMQYRLQLQMLRKCTMPMREYLNKVKTCCD 634
+ + +W + F S ++ Q R +L+ +K + + EYL ++K+ +
Sbjct: 75 GVLPRVLSCRHAHEVWDKIHKYFNSVLKSRARQLRSELKNTKKLSRSVNEYLLRIKSIVN 134
Query: 635 ILAAAGEPVSEKDQVLYILSGLGSEYNPVLVSITSRITPCSLMETHALLLSFENRLEILD 814
L A G+ VSE++QV IL GL E+N ++ + SR ++ + ALLL E + E
Sbjct: 135 SLVAVGDMVSEQEQVDSILEGLPEEFNSFVMMVYSRFDTPTVEDVEALLLLQEAQFEKFK 194
Query: 815 NFQISPEGTASI-------------XXXXXXXXXXXXXSGNRGRCSPTHXXXXXXXXXXX 955
SP +A++ + NRGR
Sbjct: 195 QELTSPSVSANVAHTETNASDSNSEHESQELGTEHYNVNANRGR-----GRGKGRGRGRG 249
Query: 956 XXXXXXXXXXXCQISYRTNHTADKCFYRADLNYVPNSLTVNYVQSNINPQHGGNNQPQGA 1135
CQI + NH A C+YR Y P ++ N S Q G +N+PQ
Sbjct: 250 KGQAQNQGKVKCQICAKPNHDAINCWYR----YDPQAMNQN---SRGGYQVGPSNRPQNF 302
Query: 1136 SP---SAAHNNASGSLISGSQVDLGYDNQWYPDSGASNHVTYDFGNLSIASEFQGDEKVH 1306
+P AH A + +D + WYPDSGAS+H+TY+ NLS +S + G ++V
Sbjct: 303 NPYMRPTAH-LAMPQPYAMPNMDQFSNGAWYPDSGASHHLTYNPNNLSYSSPYTGQDQVV 361
Query: 1307 VGNG 1318
+GNG
Sbjct: 362 MGNG 365
Score = 43.1 bits (100), Expect(4) = e-121
Identities = 16/45 (35%), Positives = 29/45 (64%)
Frame = +2
Query: 2411 FRSKPCTFIGYDTHYKGYKVLLPDNKIIITRDVVFDESVIPFANI 2545
++S PC ++G +KG+K L +I I++DV+F ES P+ ++
Sbjct: 742 YKSSPCVYLGVSPQHKGHKCLDATGRIYISKDVIFHESQFPYLSL 786
Score = 23.5 bits (49), Expect(4) = e-121
Identities = 7/16 (43%), Positives = 13/16 (81%)
Frame = +3
Query: 240 VSVKLTESNYLIWSSK 287
+++KL E N+L+WS +
Sbjct: 1 LTIKLDEKNFLLWSQQ 16
Score = 213 bits (542), Expect = 1e-52
Identities = 107/181 (59%), Positives = 132/181 (72%)
Frame = +2
Query: 2852 HPMVTRSKSGIYKPKQLFHADLINEEPSCYKQALQVPVWKAAMEKEFSALLKNGTWTLCE 3031
HPM+TR+K+G KPK +F A L EP K AL P W AM+ E+ AL+ N TWTL
Sbjct: 890 HPMITRAKTGNLKPK-VFVAAL---EPKSVKSALNDPAWLQAMQAEYKALMDNQTWTLVP 945
Query: 3032 LPSDRKLIGCKWVFKVKKDASGSIIKHKARLVAKGYTQLMGFDYTETFSPVIKPTTDRVV 3211
LP RK IGCKW+F+VK++ G++ K KARLVAKG+ Q GFD+TETFSPVIKP T R++
Sbjct: 946 LPQHRKAIGCKWIFRVKENPDGTVNKFKARLVAKGFLQTAGFDFTETFSPVIKPITIRII 1005
Query: 3212 LSLAVTHSWPIRQIDIDNAFLNGDIDTELYMEQPPGFEDVRGQHLVCKLHKSLYGLKQAS 3391
L+LAVT W ++QID++NAFLNG + E+YM QP GFE + LVCKLHKSLYGLKQA
Sbjct: 1006 LTLAVTFKWSVQQIDVNNAFLNGILQEEVYMTQPAGFE-ASDKSLVCKLHKSLYGLKQAP 1064
Query: 3392 R 3394
R
Sbjct: 1065 R 1065
>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
sativa Japonica Group]
Length = 1448
Score = 312 bits (799), Expect(3) = e-119
Identities = 160/364 (43%), Positives = 227/364 (62%), Gaps = 1/364 (0%)
Frame = +1
Query: 1321 MKISHIGNSILNSSKTSFLLKNLLHVPHITMNLISVSQFAKDNKVYFEFHPLFCLVKDQA 1500
M ISHIG++I+++ + L N+L+VP NLIS SQ A DN + E H F +KDQ
Sbjct: 362 MDISHIGHTIVHTPSRNIHLNNVLYVPQAKKNLISASQLAADNSAFLELHSKFFSIKDQV 421
Query: 1501 TCTTLLRGTVKNGLYSFHLSLPICSNPLLRLPSIQLHLLLFFPVFSNKPVVFHSVKMPSL 1680
T LL G ++GLY S F +NK + SL
Sbjct: 422 TRDVLLEGKCRHGLYPIPKS---------------------FGRSTNKQAL--GAAKLSL 458
Query: 1681 TTWHSMLGHASIEIVKRALNRCNVPYS-GNFNENVCSSCLQSKIHKLPFSGSNTLYHEPF 1857
+ WHS LGH S+ IVK+ ++R N+P S + N++VC++C ++K H+LP+ S ++ P
Sbjct: 459 SRWHSRLGHPSLPIVKQVISRNNLPCSVESVNQSVCNACQEAKSHQLPYIRSTSVSQFPL 518
Query: 1858 QLIHTDLWGPSPVQSTHGYKYYVSFIDHATRYTWFYLLKAKSDTYQAFINFKALVET*FE 2037
+L+ +D+WGP+P +S KYYVSFID +++TW YLLK KS+ ++ F F+ALVE F+
Sbjct: 519 ELVFSDVWGPAP-ESVGRNKYYVSFIDDFSKFTWIYLLKYKSEVFEKFKEFQALVERMFD 577
Query: 2038 KKIKMVQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKYMHIVEVGLALLAQS 2217
+KI +Q+D GGE+ L+ FF GI H +SCP+T QQNG AERK+ HI+EVGL+LL+ +
Sbjct: 578 RKIIAMQTDWGGEYQKLNSFFAQIGIDHHVSCPHTHQQNGSAERKHKHIIEVGLSLLSYA 637
Query: 2218 HLPMRFWPDAFCSSVYLINRTPSKILHYISPFEALAGNKPDYTSPRAFGCLCYPHLRSYN 2397
+P++FW +AF ++ YLINR PSK + +P E L KPDY+S R F C C+PHL YN
Sbjct: 638 SMPLKFWDEAFVAATYLINRIPSKTIQNSTPLEKLFNQKPDYSSLRVFSCTCWPHLHPYN 697
Query: 2398 KHKL 2409
HKL
Sbjct: 698 THKL 701
Score = 112 bits (280), Expect(3) = e-119
Identities = 84/364 (23%), Positives = 149/364 (40%), Gaps = 19/364 (5%)
Frame = +2
Query: 284 QISTAVTGYGLEDFLTGKGLPPPKYAADDCETI--------NPAYISWVRQDQXXXXXXX 439
Q+S AV G L +L G P A+ TI NPA+ W DQ
Sbjct: 36 QVSAAVHGARLLGYLNGDIKAPN---AEISVTIDGKTTTKPNPAFEDWEANDQLVLGYLL 92
Query: 440 XXXXXXXXXTTVGLNSSSAIWSALKTNFASQTTAKVMQYRLQLQMLRKCTMPMREYLNKV 619
+++ W ++ +++ T A+ + RL L +K TM + EY+ K+
Sbjct: 93 SSLSRDVLIQVATCKTAAEAWRNIEALYSTGTRARAVNTRLALTNTKKGTMKIAEYVAKM 152
Query: 620 KTCCDILAAAGEPVSEKDQVLYILSGLGSEYNPVLVSITSRITPCSLMETHALLLSFENR 799
+ CD +AA G P+ E+ V YI++GL +++P++ ++ ++ P ++ E ++ L++FE
Sbjct: 153 RALCDEMAAGGRPLDEEGLVQYIIAGLNEDFSPIVSNLCNKSDPITVGELYSQLVNFET- 211
Query: 800 LEILDNFQISPEGTASIXXXXXXXXXXXXXSGNR----------GRCSPT-HXXXXXXXX 946
+LD ++ + +G A+ GN GR +P
Sbjct: 212 --LLDLYRSTGQGGAAFVANRGRGGGGGGGRGNNNNSDGGGGGGGRGAPRGRGGGGQGRG 269
Query: 947 XXXXXXXXXXXXXXCQISYRTNHTADKCFYRADLNYVPNSLTVNYVQSNINPQHGGNNQP 1126
CQ+ ++ HTA C+YR D +YV
Sbjct: 270 GHGRGTGGQDRRPTCQVCFKRGHTAADCWYRFDEDYV----------------------- 306
Query: 1127 QGASPSAAHNNASGSLISGSQVDLGYDNQWYPDSGASNHVTYDFGNLSIASEFQGDEKVH 1306
A L++ + G D WY D+GA++H+T + L+ ++ G E++H
Sbjct: 307 -----------ADEKLVAAATNSYGIDTNWYIDTGATDHITGELEKLTTKEKYNGGEQIH 355
Query: 1307 VGNG 1318
+G
Sbjct: 356 TASG 359
Score = 57.0 bits (136), Expect(3) = e-119
Identities = 24/46 (52%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
Frame = +2
Query: 2411 FRSKPCTFIGYDTHYKGYKVL-LPDNKIIITRDVVFDESVIPFANI 2545
FRSK C F+G+ TH+KG+K L + ++ I+RDVVFDE+V PF+ +
Sbjct: 703 FRSKQCVFLGFSTHHKGFKFLDVSSGRVYISRDVVFDENVFPFSTL 748
Score = 177 bits (449), Expect = 2e-41
Identities = 87/183 (47%), Positives = 121/183 (66%), Gaps = 6/183 (3%)
Frame = +2
Query: 2864 TRSKSGIYKPKQLFHADL------INEEPSCYKQALQVPVWKAAMEKEFSALLKNGTWTL 3025
TR +SGI K K + + EP K+AL W+ AME E++AL+KN TW L
Sbjct: 912 TRLRSGIRKEKVYTNGTVKYGCFSSTGEPQNDKEALGDKNWRDAMETEYNALIKNDTWHL 971
Query: 3026 CELPSDRKLIGCKWVFKVKKDASGSIIKHKARLVAKGYTQLMGFDYTETFSPVIKPTTDR 3205
+ +IGCKWV+KVK+ A G++ ++K RL+AKG+ Q G DY +TFSPV+K T R
Sbjct: 972 VPYEKGQNIIGCKWVYKVKRKADGTLDRYKTRLIAKGFKQRYGIDYEDTFSPVVKAATIR 1031
Query: 3206 VVLSLAVTHSWPIRQIDIDNAFLNGDIDTELYMEQPPGFEDVRGQHLVCKLHKSLYGLKQ 3385
++LS+AV+ W +RQ+D+ N FL+G ++ E+YM+QPPGFE VCKL+K+LYGLKQ
Sbjct: 1032 IILSIAVSRGWSLRQLDVQNDFLHGFLEEEVYMQQPPGFESSSKPDYVCKLNKALYGLKQ 1091
Query: 3386 ASR 3394
A R
Sbjct: 1092 APR 1094
>emb|CAN79148.1| hypothetical protein VITISV_004343 [Vitis vinifera]
Length = 1334
Score = 301 bits (771), Expect(4) = e-118
Identities = 162/367 (44%), Positives = 214/367 (58%), Gaps = 10/367 (2%)
Frame = +1
Query: 1339 GNS--ILNSSKTSFL-------LKNLLHVPHITMNLISVSQFAKDNKVYFEFHPLFCLVK 1491
GNS ILN+ SF L +LHVPH++ NLISVS+F DN V+FEFH VK
Sbjct: 380 GNSLPILNTGTKSFFFPSKTFSLNQVLHVPHLSTNLISVSKFCTDNAVFFEFHSSCFFVK 439
Query: 1492 DQATCTTLLRGTVKNGLYSFHLSLPICSNPLLRLPSIQLHLLLFFPVFSNKPVVFHSVKM 1671
DQ T LL+G +++GLY F S P + FS+ +
Sbjct: 440 DQVTKKILLKGWLRDGLYEFSSSSPP-------------RAFVTTGSFSDGAI------- 479
Query: 1672 PSLTTWHSMLGHASIEIVKRALNRCNVPYSGNFNENV-CSSCLQSKIHKLPFSGSNTLYH 1848
WHS LGH ++ I+ +AL CN + N+ C C +K H LP+S S++
Sbjct: 480 -----WHSRLGHPAVPILSKALASCNPSVTLQINKIAPCIICPLAKSHSLPYSLSSSHAS 534
Query: 1849 EPFQLIHTDLWGPSPVQSTHGYKYYVSFIDHATRYTWFYLLKAKSDTYQAFINFKALVET 2028
P LIHTDLWGP+P S G +Y++ FID +R+TW Y L K Q+FI F+ +VE
Sbjct: 535 HPLALIHTDLWGPAPSTSITGARYFLIFIDDYSRHTWIYFLSTKDQALQSFITFRKMVEN 594
Query: 2029 *FEKKIKMVQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKYMHIVEVGLALL 2208
+ IK +QSD GGEF+A + + HGI H+ SCP+TPQQNG AERK H+VE GLAL+
Sbjct: 595 QLQTTIKCIQSDNGGEFLAFKPYLEAHGILHQFSCPHTPQQNGRAERKIRHLVETGLALM 654
Query: 2209 AQSHLPMRFWPDAFCSSVYLINRTPSKILHYISPFEALAGNKPDYTSPRAFGCLCYPHLR 2388
AQS LP ++W AF ++VYLIN P+K+LH+ SP + L P+Y R FGCLC+P LR
Sbjct: 655 AQSFLPSKYWTYAFQTAVYLINLLPAKLLHFQSPTQTLFHKLPNYHHLRVFGCLCFPSLR 714
Query: 2389 SYNKHKL 2409
Y +HKL
Sbjct: 715 PYTQHKL 721
Score = 134 bits (336), Expect(4) = e-118
Identities = 95/365 (26%), Positives = 151/365 (41%), Gaps = 20/365 (5%)
Frame = +2
Query: 284 QISTAVTGYGLEDFLTG-KGLPPPKYAADDCETINPAYISWVRQDQXXXXXXXXXXXXXX 460
Q+ V G ED++ G K PP + D +NP ++ W R D+
Sbjct: 45 QMENVVYANGFEDYIEGTKSCPPKELPTGD---LNPDFVQWRRFDRMVLSWMYSTLNPDI 101
Query: 461 XXTTVGLNSSSAIWSALKTNFASQTTAKVMQYRLQLQMLRKCTMPMREYLNKVKTCCDIL 640
VG +S W AL F++ + A++MQ RL+ Q +K M +Y+ K+KT D L
Sbjct: 102 MGQIVGFQTSHEAWMALHKIFSASSKARIMQLRLEFQTTKKGGDAMLDYILKMKTISDNL 161
Query: 641 AAAGEPVSEKDQVLYILSGLGSEYNPVLVSITSRITPCSLMETHALLLSFENRLEILDNF 820
AA GEPV E+D +L +L GLG +YN ++ S+T+R SL H++LL+ E RL + +
Sbjct: 162 AAVGEPVKERDHILQLLGGLGPDYNSIVASLTAREDDLSLHSVHSILLTHEQRLHLQHSS 221
Query: 821 QISPEGTAS-----------------IXXXXXXXXXXXXXSGNR--GRCSPTHXXXXXXX 943
P ++ S NR R P
Sbjct: 222 PTDPSFASAHMASXPSRQPNRPHQPRHYHHPSRPQHQASSSSNRPPTRFHPQQPRNNHPI 281
Query: 944 XXXXXXXXXXXXXXXCQISYRTNHTADKCFYRADLNYVPNSLTVNYVQSNINPQHGGNNQ 1123
CQ+ + HTA KC++R D+NY G N
Sbjct: 282 PSAHNKPHHLSTRPQCQLCGKFGHTAIKCYHRFDINY-----------------QGNNGV 324
Query: 1124 PQGASPSAAHNNASGSLISGSQVDLGYDNQWYPDSGASNHVTYDFGNLSIASEFQGDEKV 1303
P +P + A+ + + W+ D+GA++H+++ LS + G ++V
Sbjct: 325 PLAQAPFSHAMXAAAP---------DHQDSWFFDTGATHHLSHSAQTLSCVQPYSGTDQV 375
Query: 1304 HVGNG 1318
+G+G
Sbjct: 376 TIGDG 380
Score = 43.9 bits (102), Expect(4) = e-118
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +2
Query: 2411 FRSKPCTFIGYDTHYKGYKVL-LPDNKIIITRDVVFDESVIPFANIEP 2551
+RS C F+GY +KGY L + N+I I+R+V+F ES PF + P
Sbjct: 723 YRSTACVFLGYAPAHKGYLCLDVSTNRIYISRNVIFHESSFPFQSSSP 770
Score = 21.9 bits (45), Expect(4) = e-118
Identities = 6/14 (42%), Positives = 11/14 (78%)
Frame = +3
Query: 246 VKLTESNYLIWSSK 287
+KL SNY++W ++
Sbjct: 32 IKLDRSNYILWKTQ 45
Score = 197 bits (502), Expect = 7e-48
Identities = 93/181 (51%), Positives = 125/181 (69%)
Frame = +2
Query: 2852 HPMVTRSKSGIYKPKQLFHADLINEEPSCYKQALQVPVWKAAMEKEFSALLKNGTWTLCE 3031
HPMVTR+KSGI+K + EP Y QA + W AM E+ ALL+N TW+L
Sbjct: 835 HPMVTRAKSGIHKKRSFIVQH--TTEPRTYSQAXKNDSWVQAMNSEYQALLRNNTWSLVP 892
Query: 3032 LPSDRKLIGCKWVFKVKKDASGSIIKHKARLVAKGYTQLMGFDYTETFSPVIKPTTDRVV 3211
PS ++GC+W++K+K GSI +HKARLVA+G+TQ G DY +TFSPV+KP T R++
Sbjct: 893 PPSSAHIVGCRWIYKLKYRPDGSIDRHKARLVAQGFTQTPGIDYFDTFSPVVKPCTIRLI 952
Query: 3212 LSLAVTHSWPIRQIDIDNAFLNGDIDTELYMEQPPGFEDVRGQHLVCKLHKSLYGLKQAS 3391
L+LAV+ W +RQ+D++N FLNGD++ E++M QP GF + VCKLHK+LYGLKQA
Sbjct: 953 LALAVSFQWSVRQLDVENGFLNGDLEEEVFMTQPQGFVNPTYPTYVCKLHKALYGLKQAP 1012
Query: 3392 R 3394
R
Sbjct: 1013 R 1013
>gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]
Length = 1448
Score = 312 bits (799), Expect(3) = e-118
Identities = 160/364 (43%), Positives = 227/364 (62%), Gaps = 1/364 (0%)
Frame = +1
Query: 1321 MKISHIGNSILNSSKTSFLLKNLLHVPHITMNLISVSQFAKDNKVYFEFHPLFCLVKDQA 1500
M ISHIG++I+++ + L N+L+VP NLIS SQ A DN + E H F +KDQ
Sbjct: 362 MDISHIGHTIVHTPSRNIHLNNVLYVPQAKKNLISASQLAADNSAFLELHSKFFSIKDQV 421
Query: 1501 TCTTLLRGTVKNGLYSFHLSLPICSNPLLRLPSIQLHLLLFFPVFSNKPVVFHSVKMPSL 1680
T LL G ++GLY S F +NK + SL
Sbjct: 422 TRDVLLEGKCRHGLYPIPKS---------------------FGRSTNKQAL--GAAKLSL 458
Query: 1681 TTWHSMLGHASIEIVKRALNRCNVPYS-GNFNENVCSSCLQSKIHKLPFSGSNTLYHEPF 1857
+ WHS LGH S+ IVK+ ++R N+P S + N++VC++C ++K H+LP+ S ++ P
Sbjct: 459 SRWHSRLGHPSLPIVKQVISRNNLPCSVESVNQSVCNACQEAKSHQLPYIRSTSVSQFPL 518
Query: 1858 QLIHTDLWGPSPVQSTHGYKYYVSFIDHATRYTWFYLLKAKSDTYQAFINFKALVET*FE 2037
+L+ +D+WGP+P +S KYYVSFID +++TW YLLK KS+ ++ F F+ALVE F+
Sbjct: 519 ELVFSDVWGPAP-ESVGRNKYYVSFIDDFSKFTWIYLLKYKSEVFEKFKEFQALVERMFD 577
Query: 2038 KKIKMVQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKYMHIVEVGLALLAQS 2217
+KI +Q+D GGE+ L+ FF GI H +SCP+T QQNG AERK+ HI+EVGL+LL+ +
Sbjct: 578 RKIIAMQTDWGGEYQKLNSFFAQIGIDHHVSCPHTHQQNGSAERKHKHIIEVGLSLLSYA 637
Query: 2218 HLPMRFWPDAFCSSVYLINRTPSKILHYISPFEALAGNKPDYTSPRAFGCLCYPHLRSYN 2397
+P++FW +AF ++ YLINR PSK + +P E L KPDY+S R F C C+PHL YN
Sbjct: 638 SMPLKFWDEAFVAATYLINRIPSKTIQNSTPLEKLFNQKPDYSSLRVFSCTCWPHLHPYN 697
Query: 2398 KHKL 2409
HKL
Sbjct: 698 THKL 701
Score = 110 bits (274), Expect(3) = e-118
Identities = 84/364 (23%), Positives = 148/364 (40%), Gaps = 19/364 (5%)
Frame = +2
Query: 284 QISTAVTGYGLEDFLTGKGLPPPKYAADDCETI--------NPAYISWVRQDQXXXXXXX 439
Q+S AV G L +L G P A+ TI NPA+ W DQ
Sbjct: 36 QVSAAVHGARLLGYLNGDIKAPN---AEISVTIDGKTTTKPNPAFEDWEANDQLVLGYLL 92
Query: 440 XXXXXXXXXTTVGLNSSSAIWSALKTNFASQTTAKVMQYRLQLQMLRKCTMPMREYLNKV 619
+++ W ++ +++ T A+ + RL L +K TM + EY+ K+
Sbjct: 93 SSLSRDVLIQVATCKTAAEAWRNIEALYSTGTRARAVNTRLALTNTKKGTMKIAEYVAKM 152
Query: 620 KTCCDILAAAGEPVSEKDQVLYILSGLGSEYNPVLVSITSRITPCSLMETHALLLSFENR 799
+ CD +AA G P+ E+ V YI++GL +++P++ + ++ P ++ E ++ L++FE
Sbjct: 153 RALCDEMAAGGRPLDEEGLVQYIIAGLTEDFSPIVSNPCNKSNPITVGELYSQLVNFET- 211
Query: 800 LEILDNFQISPEGTASIXXXXXXXXXXXXXSGNR----------GRCSPT-HXXXXXXXX 946
+LD ++ + +G A+ GN GR +P
Sbjct: 212 --LLDLYRSTGQGGAAFVANRGRGGGGGGGRGNNNNSDGGGGGGGRGAPRGRGGGGQGRG 269
Query: 947 XXXXXXXXXXXXXXCQISYRTNHTADKCFYRADLNYVPNSLTVNYVQSNINPQHGGNNQP 1126
CQ+ ++ HTA C+YR D +YV
Sbjct: 270 GHGRGTGGQDRRPTCQVCFKRGHTAADCWYRFDEDYV----------------------- 306
Query: 1127 QGASPSAAHNNASGSLISGSQVDLGYDNQWYPDSGASNHVTYDFGNLSIASEFQGDEKVH 1306
A L++ + G D WY D+GA++H+T + L+ ++ G E++H
Sbjct: 307 -----------ADEKLVAAATNSYGIDTNWYIDTGATDHITGELEKLTTKEKYNGGEQIH 355
Query: 1307 VGNG 1318
+G
Sbjct: 356 TASG 359
Score = 57.0 bits (136), Expect(3) = e-118
Identities = 24/46 (52%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
Frame = +2
Query: 2411 FRSKPCTFIGYDTHYKGYKVL-LPDNKIIITRDVVFDESVIPFANI 2545
FRSK C F+G+ TH+KG+K L + ++ I+RDVVFDE+V PF+ +
Sbjct: 703 FRSKQCVFLGFSTHHKGFKFLDVSSGRVYISRDVVFDENVFPFSTL 748
Score = 177 bits (449), Expect = 2e-41
Identities = 87/183 (47%), Positives = 121/183 (66%), Gaps = 6/183 (3%)
Frame = +2
Query: 2864 TRSKSGIYKPKQLFHADL------INEEPSCYKQALQVPVWKAAMEKEFSALLKNGTWTL 3025
TR +SGI K K + + EP K+AL W+ AME E++AL+KN TW L
Sbjct: 912 TRLRSGIRKEKVYTNGTVKYGCFSSTGEPQNDKEALGDKNWRDAMETEYNALIKNDTWHL 971
Query: 3026 CELPSDRKLIGCKWVFKVKKDASGSIIKHKARLVAKGYTQLMGFDYTETFSPVIKPTTDR 3205
+ +IGCKWV+KVK+ A G++ ++K RL+AKG+ Q G DY +TFSPV+K T R
Sbjct: 972 VPYEKGQNIIGCKWVYKVKRKADGTLDRYKTRLIAKGFKQRYGIDYEDTFSPVVKAATIR 1031
Query: 3206 VVLSLAVTHSWPIRQIDIDNAFLNGDIDTELYMEQPPGFEDVRGQHLVCKLHKSLYGLKQ 3385
++LS+AV+ W +RQ+D+ N FL G ++ E+YM+QPPGFE + VCKL+K+LYGLKQ
Sbjct: 1032 IILSIAVSRGWNLRQLDVQNDFLRGFLEEEVYMQQPPGFESSSKRDYVCKLNKALYGLKQ 1091
Query: 3386 ASR 3394
A R
Sbjct: 1092 APR 1094
>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1447
Score = 308 bits (788), Expect(3) = e-118
Identities = 161/366 (43%), Positives = 228/366 (62%), Gaps = 3/366 (0%)
Frame = +1
Query: 1321 MKISHIGNSILNSSKTSFLLKNLLHVPHITMNLISVSQFAKDNKVYFEFHPLFCLVKDQA 1500
M+ISHIG+S + + L+N+L+VP+ NL+S ++ DN Y E + + +KD A
Sbjct: 356 MEISHIGHSTVRTPNRDIHLRNILYVPNANKNLVSANRLVSDNSAYMELYSKYFNLKDLA 415
Query: 1501 TCTTLLRGTVKNGLYSFHLSLPICSNPLLRLPSIQLHLLLFFPVFSNKPV--VFHSVKMP 1674
T L RG + LY+ LPS H +P+ F ++K P
Sbjct: 416 TKKLLFRGPCRGRLYA--------------LPSSSPHE-------RPRPLKEAFGAIK-P 453
Query: 1675 SLTTWHSMLGHASIEIVKRALNRCNVPYSGNFN-ENVCSSCLQSKIHKLPFSGSNTLYHE 1851
S WHS LGH + IV++ +++ N+P N ++VC +C Q K H+LP+S S+++
Sbjct: 454 SFERWHSRLGHPASPIVEKVISKNNLPCLAESNKQSVCDACQQGKSHQLPYSRSSSMSSH 513
Query: 1852 PFQLIHTDLWGPSPVQSTHGYKYYVSFIDHATRYTWFYLLKAKSDTYQAFINFKALVET* 2031
P +LI++D+WGP+ + S G +YYVSFI +++TW YL+K KS+ Q F F+ALVE
Sbjct: 514 PLELIYSDVWGPA-LTSVGGKQYYVSFIGDYSKFTWLYLIKHKSEVIQKFHEFQALVERL 572
Query: 2032 FEKKIKMVQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKYMHIVEVGLALLA 2211
F +KI +QSD GGE+ L FF GI H +SCP+T QQNG AERK+ HIVEVGL LLA
Sbjct: 573 FNRKIIAMQSDWGGEYEKLHSFFTKIGITHHVSCPHTHQQNGSAERKHRHIVEVGLTLLA 632
Query: 2212 QSHLPMRFWPDAFCSSVYLINRTPSKILHYISPFEALAGNKPDYTSPRAFGCLCYPHLRS 2391
S +P++FW +AF ++VYLINRTP+K+L +++P E L PDY+S R FGC C+PHLR
Sbjct: 633 YSSMPLKFWDEAFQAAVYLINRTPTKLLQFLTPLEHLFNQTPDYSSLRVFGCACWPHLRP 692
Query: 2392 YNKHKL 2409
YN HKL
Sbjct: 693 YNTHKL 698
Score = 115 bits (289), Expect(3) = e-118
Identities = 87/357 (24%), Positives = 140/357 (39%), Gaps = 12/357 (3%)
Frame = +2
Query: 284 QISTAVTGYGLEDFLTGKGLPPPKY----AADDCE----TINPAYISWVRQDQXXXXXXX 439
Q+ AV G LE LTG P A D E NP + WV DQ
Sbjct: 33 QVMAAVRGARLEGHLTGATKTPNALITTTAGDKGEKEVTVRNPEFDDWVATDQQVLGFLL 92
Query: 440 XXXXXXXXXTTVGLNSSSAIWSALKTNFASQTTAKVMQYRLQLQMLRKCTMPMREYLNKV 619
+++A W L+ ++S T A+ + R+ L +K T+ + EY++K+
Sbjct: 93 STLARDVLAQVATCGTAAAAWQMLEEMYSSVTRARFINTRIALSNTKKGTLSINEYVSKM 152
Query: 620 KTCCDILAAAGEPVSEKDQVLYILSGLGSEYNPVLVSITSRITPCSLMETHALLLSFENR 799
K D + AAG+ V + D + YI++GL Y PV+ +I + T +L E ++ LLSFE R
Sbjct: 153 KALADEMTAAGKIVDDDDLISYIIAGLDDTYEPVISTIVGKDT-MTLGEAYSQLLSFEQR 211
Query: 800 LEIL----DNFQISPEGTASIXXXXXXXXXXXXXSGNRGRCSPTHXXXXXXXXXXXXXXX 967
L + + ++ G G G + +
Sbjct: 212 LALRHGGDSSVNLANRGRGGGGGQQRGGNTGNGGRGRGGNNNGANRGRGRGNNGGARPPG 271
Query: 968 XXXXXXXCQISYRTNHTADKCFYRADLNYVPNSLTVNYVQSNINPQHGGNNQPQGASPSA 1147
CQ+ Y+ HT C+YR D ++VP+
Sbjct: 272 GVDNRPKCQLCYKRGHTVINCWYRYDEDFVPD---------------------------- 303
Query: 1148 AHNNASGSLISGSQVDLGYDNQWYPDSGASNHVTYDFGNLSIASEFQGDEKVHVGNG 1318
+GS G D WY D+ A++HVT + L++ ++G ++VH +G
Sbjct: 304 -------EKYAGSATSYGIDTNWYVDTSATDHVTGELDKLTVRDRYKGQDQVHTASG 353
Score = 55.5 bits (132), Expect(3) = e-118
Identities = 25/46 (54%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Frame = +2
Query: 2411 FRSKPCTFIGYDTHYKGYKVLLPD-NKIIITRDVVFDESVIPFANI 2545
FRSK CTF+GY T +KG+K L P ++ I+RDV+FDE+ PFA +
Sbjct: 700 FRSKQCTFLGYSTLHKGFKCLDPSTGRVYISRDVIFDETNFPFAKL 745
Score = 172 bits (435), Expect = 8e-40
Identities = 82/159 (51%), Positives = 109/159 (68%)
Frame = +2
Query: 2918 INEEPSCYKQALQVPVWKAAMEKEFSALLKNGTWTLCELPSDRKLIGCKWVFKVKKDASG 3097
+ EP ALQ WK AM+ E+ AL+ N TW L R +I CKWV+K+K+ G
Sbjct: 935 VTGEPKNLTDALQNTNWKKAMDIEYEALMNNKTWHLVPPKQGRNVIDCKWVYKIKRKQDG 994
Query: 3098 SIIKHKARLVAKGYTQLMGFDYTETFSPVIKPTTDRVVLSLAVTHSWPIRQIDIDNAFLN 3277
S+ ++KARLVAKG+ Q G DY +TFSPV+K T R+VLS+AV+ W +RQ+D+ NAFL+
Sbjct: 995 SLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIVLSIAVSRGWCMRQLDVQNAFLH 1054
Query: 3278 GDIDTELYMEQPPGFEDVRGQHLVCKLHKSLYGLKQASR 3394
G ++ E+YM+QPPG+ED VCKL K+LYGLKQA R
Sbjct: 1055 GFLEEEVYMKQPPGYEDESFPGYVCKLDKALYGLKQAPR 1093
>gb|KYP67039.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1279
Score = 321 bits (822), Expect(3) = e-118
Identities = 174/367 (47%), Positives = 219/367 (59%), Gaps = 4/367 (1%)
Frame = +1
Query: 1321 MKISHIGNSILNS---SKTSFLLKNLLHVPHITMNLISVSQFAKDNKVYFEFHPLFCLVK 1491
++I+ G SI S S+ F L NLLHVP IT NL+SVS+FAKDN V+FEFH CLVK
Sbjct: 258 LQINGSGTSIFISPINSQFKFHLNNLLHVPLITKNLLSVSKFAKDNCVFFEFHANHCLVK 317
Query: 1492 DQATCTTLLRGTV-KNGLYSFHLSLPICSNPLLRLPSIQLHLLLFFPVFSNKPVVFHSVK 1668
Q T LL+G V +GLYSF P ++L +L F N V
Sbjct: 318 SQDTNEVLLQGVVGADGLYSF--------------PHLKLQVLDSFNFNKNSDV------ 357
Query: 1669 MPSLTTWHSMLGHASIEIVKRALNRCNVPYSGNFNENVCSSCLQSKIHKLPFSGSNTLYH 1848
S T WH+ LGH + ++K L +CN+ S CSSC K +LP S S T+Y
Sbjct: 358 SSSSTMWHTRLGHPNSHVLKLVLTQCNLLSSNTHVTEFCSSCCVGKSRRLPSSASQTIYS 417
Query: 1849 EPFQLIHTDLWGPSPVQSTHGYKYYVSFIDHATRYTWFYLLKAKSDTYQAFINFKALVET 2028
P +I TDLWGPS + S GY YYV+FID ++YTW Y LK+K++T F FKA+ E
Sbjct: 418 APLDVIFTDLWGPSHITSFSGYLYYVAFIDAFSKYTWIYPLKSKAETLSVFQQFKAMAEL 477
Query: 2029 *FEKKIKMVQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKYMHIVEVGLALL 2208
F KIK VQSD GGE+ A + F T+GI HR+ CP+T QNG+ ERK+ HIVE+GL LL
Sbjct: 478 QFNTKIKSVQSDWGGEYRAFTSFLATNGIQHRVICPHTHHQNGVVERKHRHIVEIGLTLL 537
Query: 2209 AQSHLPMRFWPDAFCSSVYLINRTPSKILHYISPFEALAGNKPDYTSPRAFGCLCYPHLR 2388
+ LP++FW AF ++VYLINR PS L++ PF L PDY R FGC C+P LR
Sbjct: 538 HHASLPLKFWDFAFTTAVYLINRLPSAALNFNVPFTTLFNKSPDYKFLRTFGCACFPFLR 597
Query: 2389 SYNKHKL 2409
Y HKL
Sbjct: 598 PYASHKL 604
Score = 108 bits (270), Expect(3) = e-118
Identities = 81/283 (28%), Positives = 115/283 (40%), Gaps = 1/283 (0%)
Frame = +2
Query: 473 VGLNSSSAIWSALKTNFASQTTAKVMQYRLQLQMLRKCTMPMREYLNKVKTCCDILAAAG 652
+G S +W + F +QT A+ Q R L+ MR++L ++KT D LA G
Sbjct: 19 IGSVHSYQVWDKVHEYFHTQTKARARQLRTDLRSTTLDGQSMRDFLTQIKTIADELAGVG 78
Query: 653 EPVSEKDQVLYILSGLGSEYNPVLVSITSRITPCSLMETHALLLSFENRLEILDNFQISP 832
PVS ++ V +L GL EY PV+ I S+ + E ALLL+ E+R SP
Sbjct: 79 SPVSLEEYVDAVLEGLPQEYAPVVSVIESKFVTPPIAEVEALLLAHESRANRFRKQSFSP 138
Query: 833 EGTASIXXXXXXXXXXXXXSGNRGRCSPTHXXXXXXXXXXXXXXXXXXXXXXCQISYRTN 1012
+ + SG RG CQI ++
Sbjct: 139 --SINYTQGYSRGSVSGGHSGRRG------------GRGSGRGRGGRFANFQCQICFKYG 184
Query: 1013 HTADKCFYRADLNYVP-NSLTVNYVQSNINPQHGGNNQPQGASPSAAHNNASGSLISGSQ 1189
HTA+ CFYRAD+NY P SL + V + P
Sbjct: 185 HTANVCFYRADVNYQPAESLVLAMVANTSQP----------------------------- 215
Query: 1190 VDLGYDNQWYPDSGASNHVTYDFGNLSIASEFQGDEKVHVGNG 1318
G ++ W PDSGAS HVT + N+ F G +++ +GNG
Sbjct: 216 ---GANSSWIPDSGASFHVTGEPQNIHQLEHFDGPDQIFIGNG 255
Score = 49.3 bits (116), Expect(3) = e-118
Identities = 21/49 (42%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Frame = +2
Query: 2411 FRSKPCTFIGYDTHYKGYKVLLPDNKIIITRDVVFDESVIPFANI-EPS 2554
FRS+ C F+GY +KGYK L +I I++DV+F+E P+ ++ +PS
Sbjct: 606 FRSQECVFLGYSNSHKGYKCLSSSGRIYISKDVIFNEHRFPYTDLFQPS 654
Score = 213 bits (543), Expect = 7e-53
Identities = 105/181 (58%), Positives = 137/181 (75%)
Frame = +2
Query: 2852 HPMVTRSKSGIYKPKQLFHADLINEEPSCYKQALQVPVWKAAMEKEFSALLKNGTWTLCE 3031
HPM TRSKSG + P+ L + EP KQAL P W +AM++E++AL+ N TW L
Sbjct: 739 HPMQTRSKSGFHNPRIHPSLFLAHSEPKTVKQALADPNWFSAMQQEYNALMLNHTWDLVS 798
Query: 3032 LPSDRKLIGCKWVFKVKKDASGSIIKHKARLVAKGYTQLMGFDYTETFSPVIKPTTDRVV 3211
LPSDRK +GCKWVF+VK++A GSI K KARLVAKG+ Q+ GFD+ ETFSPVIKP T R++
Sbjct: 799 LPSDRKAVGCKWVFRVKENADGSIDKLKARLVAKGFHQVHGFDFHETFSPVIKPITIRII 858
Query: 3212 LSLAVTHSWPIRQIDIDNAFLNGDIDTELYMEQPPGFEDVRGQHLVCKLHKSLYGLKQAS 3391
L+LA+T++W + Q+D++NAFLNG ++ +YM QPPGFE + LVCKL+K+LYGLKQA
Sbjct: 859 LTLALTNNWNLFQLDVNNAFLNGTLEETIYMVQPPGFE-AGDKSLVCKLNKALYGLKQAP 917
Query: 3392 R 3394
R
Sbjct: 918 R 918
>emb|CAN77295.1| hypothetical protein VITISV_005638 [Vitis vinifera]
Length = 1198
Score = 296 bits (757), Expect(3) = e-118
Identities = 164/372 (44%), Positives = 209/372 (56%), Gaps = 9/372 (2%)
Frame = +1
Query: 1321 MKISHIGNSILNSSKTSFLLKNLLHVPHITMNLISVSQFAKDNKVYFEFHPLFCLVKDQA 1500
+ IS+ G+ L S SF LK + HV I+ NLISV++F DN FEF VKD
Sbjct: 277 LSISNTGSHRLLSDSRSFHLKKVFHVHFISANLISVAKFYLDNNALFEFRSNSFFVKDLH 336
Query: 1501 TCTTLLRGTVKNGLYSFHLSLPICSNPLLRLPSIQLHLLLFFPVF--SNKPVVFHSVKMP 1674
T L +G ++NGLY F P+L + + F N + + VK+
Sbjct: 337 TKKVLAQGKLENGLYRF---------PVLNSKKVAFVGAINSSTFYSHNSSIFDNKVKL- 386
Query: 1675 SLTTWHSMLGHASIEIVKRALNRCNVPYSGNFN-------ENVCSSCLQSKIHKLPFSGS 1833
WH LGHAS IV + + CNV + N N VCSSC +K H+LP S
Sbjct: 387 ----WHHRLGHASTNIVTQIMQSCNVSFEKNKNTVCSTVCSTVCSSCQLAKSHRLPTHLS 442
Query: 1834 NTLYHEPFQLIHTDLWGPSPVQSTHGYKYYVSFIDHATRYTWFYLLKAKSDTYQAFINFK 2013
+ +P +L+HTDLWGP+ V+ST G +Y++ F+D +RYTWFY L+ K AF FK
Sbjct: 443 LSCASKPLELVHTDLWGPASVKSTSGARYFILFLDDYSRYTWFYPLQTKDQALPAFKKFK 502
Query: 2014 ALVET*FEKKIKMVQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKYMHIVEV 2193
VE F+ KIK +QSD GGEF + F Q GI HR SCPY QN ERK+ H+VE
Sbjct: 503 LQVENQFDAKIKCLQSDNGGEFRSFKTFLQQTGIFHRFSCPYNSAQNERVERKHRHVVET 562
Query: 2194 GLALLAQSHLPMRFWPDAFCSSVYLINRTPSKILHYISPFEALAGNKPDYTSPRAFGCLC 2373
GLALLA + LPM FW AF ++ +LINR PSK+L SP+ L PDY S R F CLC
Sbjct: 563 GLALLAHASLPMEFWQYAFQTATFLINRMPSKVLQNNSPYFTLFQKVPDYESLRVFSCLC 622
Query: 2374 YPHLRSYNKHKL 2409
YP +R YN HKL
Sbjct: 623 YPFIRPYNNHKL 634
Score = 144 bits (364), Expect(3) = e-118
Identities = 92/290 (31%), Positives = 144/290 (49%), Gaps = 8/290 (2%)
Frame = +2
Query: 473 VGLNSSSAIWSALKTNFASQTTAKVMQYRLQLQMLRKCTMPMREYLNKVKTCCDILAAAG 652
+G NSS + W+AL+ F+S + A++MQ RL+LQ +K ++ M +Y+ KVK D LAA G
Sbjct: 5 IGHNSSHSAWNALEKTFSSSSRARIMQLRLELQSTKKGSLSMIDYIMKVKGAADSLAAIG 64
Query: 653 EPVSEKDQVLYILSGLGSEYNPVLVSITSRITPCSLMETHALLLSFENRLEILDNFQISP 832
EPVSE+DQV+ +L GLGS+YN V+ +I + S+ H++LL+FE+RLE + +
Sbjct: 65 EPVSEQDQVMNLLGGLGSDYNAVVTAINIKDDKISIEVVHSMLLAFEHRLEQQSSIEQFS 124
Query: 833 EGTASIXXXXXXXXXXXXXSGNRGRCSPTH--------XXXXXXXXXXXXXXXXXXXXXX 988
+A+ +G RG+ +
Sbjct: 125 SISANYASSSNSRGSGRRYNGGRGQNHTPNISNYTYRGRGRGGRYGQNGRHNSNSSEKPQ 184
Query: 989 CQISYRTNHTADKCFYRADLNYVPNSLTVNYVQSNINPQHGGNNQPQGASPSAAHNNASG 1168
CQ+ + HT C+++ D++Y ++Q SPS A N S
Sbjct: 185 CQLCGKFGHTVQICYHKFDISY-------------------QSSQSSNTSPSNASNPNSI 225
Query: 1169 SLISGSQVDLGYDNQWYPDSGASNHVTYDFGNLSIASEFQGDEKVHVGNG 1318
+ S +L D WY DSGA++H+T GNL+ +S + G +KV +GNG
Sbjct: 226 PAMVASSNNLAEDT-WYLDSGANHHLTQSVGNLTSSSPYTGIDKVTIGNG 274
Score = 38.1 bits (87), Expect(3) = e-118
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 2411 FRSKPCTFIGYDTHYKGYKVL-LPDNKIIITRDVVFDESVIPFANIEPSQP 2560
+RS F+GY H KG+ L ++ IT VVFDE P A P P
Sbjct: 636 YRSVQSLFLGYSLHNKGFLCLDFLTGRVYITPHVVFDEGQFPLAKTHPLSP 686
Score = 142 bits (358), Expect = 1e-30
Identities = 66/118 (55%), Positives = 87/118 (73%)
Frame = +2
Query: 2975 AMEKEFSALLKNGTWTLCELPSDRKLIGCKWVFKVKKDASGSIIKHKARLVAKGYTQLMG 3154
AM+ E +AL +N TW L E PS LIGCKWV+K+K GSI ++KARLVAKGY Q G
Sbjct: 768 AMDLEIAALHRNQTWDLVEQPSKVNLIGCKWVYKLKHKPDGSIERYKARLVAKGYNQTHG 827
Query: 3155 FDYTETFSPVIKPTTDRVVLSLAVTHSWPIRQIDIDNAFLNGDIDTELYMEQPPGFED 3328
DY ETFS V+K T R++LS+A++ W IRQ+D+ NAFLNG+++ ++YM QPPG+ D
Sbjct: 828 LDYFETFSLVVKAATIRIILSVALSFQWEIRQLDVHNAFLNGELEEQVYMSQPPGYLD 885
>emb|CAN73924.1| hypothetical protein VITISV_041509 [Vitis vinifera]
Length = 1434
Score = 298 bits (763), Expect(4) = e-117
Identities = 161/367 (43%), Positives = 213/367 (58%), Gaps = 10/367 (2%)
Frame = +1
Query: 1339 GNS--ILNSSKTSFL-------LKNLLHVPHITMNLISVSQFAKDNKVYFEFHPLFCLVK 1491
GNS ILN+ SF L +LHVPH++ NLISVS+F DN V+FE H VK
Sbjct: 380 GNSLPILNTGTKSFFFPSKTFSLNQVLHVPHLSTNLISVSKFXTDNAVFFEXHSSCFFVK 439
Query: 1492 DQATCTTLLRGTVKNGLYSFHLSLPICSNPLLRLPSIQLHLLLFFPVFSNKPVVFHSVKM 1671
DQ T LL+G +++GLY F S P + FS+ +
Sbjct: 440 DQVTKKILLKGWLRDGLYEFSSSSPP-------------RAFVTTGSFSDGAI------- 479
Query: 1672 PSLTTWHSMLGHASIEIVKRALNRCNVPYSGNFNENV-CSSCLQSKIHKLPFSGSNTLYH 1848
WHS LGH ++ I+ +AL CN + N+ C C +K H LP+S S++
Sbjct: 480 -----WHSRLGHPAVPILSKALASCNPSVTLQINKIAPCIICPLAKSHSLPYSLSSSHAS 534
Query: 1849 EPFQLIHTDLWGPSPVQSTHGYKYYVSFIDHATRYTWFYLLKAKSDTYQAFINFKALVET 2028
P LIHTDLWGP+P S G +Y++ FID +R+TW Y L K Q+FI F+ +VE
Sbjct: 535 HPLALIHTDLWGPAPSTSITGARYFLIFIDDYSRHTWIYFLSTKDQALQSFITFRKMVEN 594
Query: 2029 *FEKKIKMVQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKYMHIVEVGLALL 2208
+ IK +QSD GGEF+A + + HGI H+ SCP+TPQQNG AERK H+VE GLAL+
Sbjct: 595 QLQTTIKCIQSDNGGEFLAFKPYLEAHGILHQFSCPHTPQQNGRAERKIRHLVETGLALM 654
Query: 2209 AQSHLPMRFWPDAFCSSVYLINRTPSKILHYISPFEALAGNKPDYTSPRAFGCLCYPHLR 2388
AQS LP ++W AF ++VYLIN P+K+LH+ SP + L P+Y R FGCLC+P LR
Sbjct: 655 AQSFLPSKYWTYAFQTAVYLINLLPAKLLHFQSPTQTLFHKLPNYHHLRVFGCLCFPSLR 714
Query: 2389 SYNKHKL 2409
Y +HKL
Sbjct: 715 PYTQHKL 721
Score = 134 bits (336), Expect(4) = e-117
Identities = 97/365 (26%), Positives = 155/365 (42%), Gaps = 20/365 (5%)
Frame = +2
Query: 284 QISTAVTGYGLEDFLTG-KGLPPPKYAADDCETINPAYISWVRQDQXXXXXXXXXXXXXX 460
Q+ V G ED++ G K PP + D +NP ++ W R D+
Sbjct: 45 QMENVVYANGFEDYIEGTKSCPPKELPTGD---LNPDFVQWRRFDRMVLSWMYSTLNPDI 101
Query: 461 XXTTVGLNSSSAIWSALKTNFASQTTAKVMQYRLQLQMLRKCTMPMREYLNKVKTCCDIL 640
VG +S W AL F++ + A++MQ RL+ Q +K M +Y+ K+KT D L
Sbjct: 102 MGQIVGFQTSHEAWMALHKIFSASSKARIMQLRLEFQTTKKGGDAMLDYILKMKTISDNL 161
Query: 641 AAAGEPVSEKDQVLYILSGLGSEYNPVLVSITSRITPCSLMETHALLLSFENRLEILDNF 820
AA GEPV E+D +L +L GLG +YN ++ S+T+R SL H++LL+ E RL + +
Sbjct: 162 AAVGEPVKERDHILQLLGGLGPDYNSIVASLTAREDDLSLHSVHSILLTHEQRLHLQHSS 221
Query: 821 QISPE----GTASI-------------XXXXXXXXXXXXXSGNR--GRCSPTHXXXXXXX 943
P AS+ S NR R P
Sbjct: 222 PTDPSFASAHMASVPSRQPNRPHQPRHYHHPSRPQHQASSSSNRPPTRFHPQQPRNNHPI 281
Query: 944 XXXXXXXXXXXXXXXCQISYRTNHTADKCFYRADLNYVPNSLTVNYVQSNINPQHGGNNQ 1123
CQ+ + HTA KC++R D+NY G N
Sbjct: 282 PSAHNKPHHLSTRPQCQLCGKFGHTAIKCYHRFDINY-----------------QGNNGV 324
Query: 1124 PQGASPSAAHNNASGSLISGSQVDLGYDNQWYPDSGASNHVTYDFGNLSIASEFQGDEKV 1303
P +P S ++++ + + + W+ D+GA++H+++ LS + G ++V
Sbjct: 325 PLAQAP------FSHAMLAAAP---DHQDSWFFDTGATHHLSHSAQTLSCVQPYSGTDQV 375
Query: 1304 HVGNG 1318
+G+G
Sbjct: 376 TIGDG 380
Score = 43.9 bits (102), Expect(4) = e-117
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +2
Query: 2411 FRSKPCTFIGYDTHYKGYKVL-LPDNKIIITRDVVFDESVIPFANIEP 2551
+RS C F+GY +KGY L + N+I I+R+V+F ES PF + P
Sbjct: 723 YRSTACVFLGYAPAHKGYLCLDVSTNRIYISRNVIFHESSFPFQSSSP 770
Score = 21.9 bits (45), Expect(4) = e-117
Identities = 6/14 (42%), Positives = 11/14 (78%)
Frame = +3
Query: 246 VKLTESNYLIWSSK 287
+KL SNY++W ++
Sbjct: 32 IKLDRSNYILWKTQ 45
Score = 199 bits (505), Expect = 3e-48
Identities = 94/181 (51%), Positives = 126/181 (69%)
Frame = +2
Query: 2852 HPMVTRSKSGIYKPKQLFHADLINEEPSCYKQALQVPVWKAAMEKEFSALLKNGTWTLCE 3031
HPMVTR+KSGI+K + EP Y QA + W AM E+ ALL+N TW+L
Sbjct: 835 HPMVTRAKSGIHKKRSFIVQH--TTEPRTYSQASKNDSWVQAMNSEYQALLRNNTWSLVP 892
Query: 3032 LPSDRKLIGCKWVFKVKKDASGSIIKHKARLVAKGYTQLMGFDYTETFSPVIKPTTDRVV 3211
PS ++GC+W++K+K GSI +HKARLVA+G+TQ G DY +TFSPV+KP T R++
Sbjct: 893 PPSSAHIVGCRWIYKLKYRPDGSIDRHKARLVAQGFTQTPGIDYFDTFSPVVKPCTIRLI 952
Query: 3212 LSLAVTHSWPIRQIDIDNAFLNGDIDTELYMEQPPGFEDVRGQHLVCKLHKSLYGLKQAS 3391
L+LAV+ W +RQ+D++NAFLNGD++ E++M QP GF + VCKLHK+LYGLKQA
Sbjct: 953 LALAVSFQWSVRQLDVENAFLNGDLEEEVFMTQPQGFVNPTYPTYVCKLHKALYGLKQAP 1012
Query: 3392 R 3394
R
Sbjct: 1013 R 1013
>gb|KYP71160.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1268
Score = 315 bits (808), Expect(3) = e-117
Identities = 171/359 (47%), Positives = 217/359 (60%), Gaps = 3/359 (0%)
Frame = +1
Query: 1342 NSILNSSKTSFLLK--NLLHVPHITMNLISVSQFAKDNKVYFEFHPLFCLVKDQATCTTL 1515
+S L+ K++F K +LLHVP IT NL+SVS+FAKDN VYFEFH C VK Q T L
Sbjct: 312 SSFLSPIKSNFCFKLNDLLHVPSITKNLLSVSKFAKDNSVYFEFHSHCCFVKSQVTNEIL 371
Query: 1516 LRGTV-KNGLYSFHLSLPICSNPLLRLPSIQLHLLLFFPVFSNKPVVFHSVKMPSLTTWH 1692
L+G V +GLYSF SN L+ PS+ L+ S P V S T+WH
Sbjct: 372 LQGVVGSDGLYSF-------SNLELQGPSV---LVSSSMASSVDPAVSAFAIPSSHTSWH 421
Query: 1693 SMLGHASIEIVKRALNRCNVPYSGNFNENVCSSCLQSKIHKLPFSGSNTLYHEPFQLIHT 1872
+ L H + ++K LN CN+ S CSSC K H+LP S ++Y P LI T
Sbjct: 422 TRLSHPNSHVLKLVLNHCNIAPSNRNVSEFCSSCCVGKSHRLPSLVSESVYSAPLDLIFT 481
Query: 1873 DLWGPSPVQSTHGYKYYVSFIDHATRYTWFYLLKAKSDTYQAFINFKALVET*FEKKIKM 2052
DLWGPS V S GY YYVSFID +++TW Y LK+KSDT F FKA+VE KIK
Sbjct: 482 DLWGPSHVVSHSGYVYYVSFIDAFSKFTWIYPLKSKSDTLSVFQQFKAMVELQLNTKIKS 541
Query: 2053 VQSDGGGEFIALSQFFQTHGIHHRISCPYTPQQNGLAERKYMHIVEVGLALLAQSHLPMR 2232
+QSD GGE+ + + F THGI HR+ CP+T QNG+ ERK+ HIV++G+ LL + LP+
Sbjct: 542 IQSDWGGEYRSFTAFLATHGITHRLICPHTHHQNGVVERKHRHIVDIGITLLHHASLPLT 601
Query: 2233 FWPDAFCSSVYLINRTPSKILHYISPFEALAGNKPDYTSPRAFGCLCYPHLRSYNKHKL 2409
FW AF ++VYLINR P+ L++ PF L PDY + FGC C+P LR Y HKL
Sbjct: 602 FWDYAFSTAVYLINRLPTASLNFDIPFTVLFKQTPDYKFLKTFGCACFPFLRPYTTHKL 660
Score = 109 bits (273), Expect(3) = e-117
Identities = 81/296 (27%), Positives = 120/296 (40%), Gaps = 14/296 (4%)
Frame = +2
Query: 473 VGLNSSSAIWSALKTNFASQTTAKVMQYRLQLQMLRKCTMPMREYLNKVKTCCDILAAAG 652
+G S +W + F +QT A Q R L+ MRE+L+++K D LA G
Sbjct: 19 IGSVHSYQVWEKIHEYFHTQTKACARQLRTDLRTTSLDGKTMREFLSQIKNIADELAGVG 78
Query: 653 EPVSEKDQVLYILSGLGSEYNPVLVSITSRITPCSLMETHALLLSFENRLEILDNFQISP 832
P + V IL GL +Y PV+ I S+ + E ALLL+ E+R SP
Sbjct: 79 HPFPLDEYVDAILEGLPQDYAPVVSVIESKFATPPIAEVEALLLAHESRNNRFCKQSFSP 138
Query: 833 EGTASIXXXXXXXXXXXXXSGNRGRCSPTHXXXXXXXXXXXXXXXXXXXXXXCQISYRTN 1012
+ SG RG S CQI + +
Sbjct: 139 SINYTHGYARGSVNHGGGNSGRRGGSS-------------GRGRGGRFANFQCQICLKYS 185
Query: 1013 HTADKCFYRADLNYVPNSLTVNYVQSNINP--------------QHGGNNQPQGASPSAA 1150
HTA+ CFYRAD NY P+ V Y S + P G Q + +
Sbjct: 186 HTANICFYRADANYHPHDSLVLYDPSTLQPVQVNSPPSITKTSNSWGNPTSKQPSQDTNV 245
Query: 1151 HNNASGSLISGSQVDLGYDNQWYPDSGASNHVTYDFGNLSIASEFQGDEKVHVGNG 1318
++ ++++ + ++ W PDSGAS HVT + N+ F G +++ +GNG
Sbjct: 246 NSVTPSAMLANTPSQGAVNSTWIPDSGASFHVTGEPQNVHQLGHFDGPDQIFIGNG 301
Score = 50.4 bits (119), Expect(3) = e-117
Identities = 20/45 (44%), Positives = 31/45 (68%)
Frame = +2
Query: 2411 FRSKPCTFIGYDTHYKGYKVLLPDNKIIITRDVVFDESVIPFANI 2545
FRS+ C F+GY +KGYK L KI I++DV+F+E+ P+ ++
Sbjct: 662 FRSQECVFLGYSNSHKGYKCLSASGKIYISKDVIFNETRFPYLDL 706
Score = 217 bits (552), Expect = 5e-54
Identities = 107/181 (59%), Positives = 140/181 (77%)
Frame = +2
Query: 2852 HPMVTRSKSGIYKPKQLFHADLINEEPSCYKQALQVPVWKAAMEKEFSALLKNGTWTLCE 3031
H M TRSKSGIYKPK L + EP KQAL P W +AM++E+SALL+N TW L
Sbjct: 789 HSMQTRSKSGIYKPKMPPSLFLAHSEPKNVKQALSDPDWFSAMKQEYSALLQNHTWDLVP 848
Query: 3032 LPSDRKLIGCKWVFKVKKDASGSIIKHKARLVAKGYTQLMGFDYTETFSPVIKPTTDRVV 3211
LPS+R+ +GCKWVF+VK++A GSI K KARLVAKG+ Q+ GFD+ ETFSPVIKP T R++
Sbjct: 849 LPSNRQAVGCKWVFRVKENADGSINKFKARLVAKGFHQVHGFDFHETFSPVIKPITIRII 908
Query: 3212 LSLAVTHSWPIRQIDIDNAFLNGDIDTELYMEQPPGFEDVRGQHLVCKLHKSLYGLKQAS 3391
++LA+T++W + Q+D++NAFLNG ++ +YM QPPGFE V + LVCKL+K+LYG+KQA
Sbjct: 909 ITLALTYNWHLFQLDVNNAFLNGILEETVYMVQPPGFE-VEDKSLVCKLNKALYGVKQAP 967
Query: 3392 R 3394
R
Sbjct: 968 R 968
>gb|KYP68392.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1085
Score = 320 bits (820), Expect(3) = e-116
Identities = 164/350 (46%), Positives = 214/350 (61%), Gaps = 1/350 (0%)
Frame = +1
Query: 1363 KTSFLLKNLLHVPHITMNLISVSQFAKDNKVYFEFHPLFCLVKDQATCTTLLRGTV-KNG 1539
K F L NLL V IT NLISVSQF+KDN VYFEFHP CLVK Q T LL+G+V +G
Sbjct: 274 KFQFALNNLLFVLSITKNLISVSQFSKDNSVYFEFHPYICLVKSQDTKEVLLQGSVGPDG 333
Query: 1540 LYSFHLSLPICSNPLLRLPSIQLHLLLFFPVFSNKPVVFHSVKMPSLTTWHSMLGHASIE 1719
LY F LP S ++ Q+ F V + + S TWHS LGH +++
Sbjct: 334 LYQFPALLPTPSTQSVQ----QVQPARSFSVNTA------AKSYVSFATWHSRLGHPNVD 383
Query: 1720 IVKRALNRCNVPYSGNFNENVCSSCLQSKIHKLPFSGSNTLYHEPFQLIHTDLWGPSPVQ 1899
++K N+ N + C+ C K H+LP + S +Y+ PF L++ DLWGP+PV
Sbjct: 384 VMKHVSRNFNIQLVTNNKSDFCTPCCLGKSHRLPSNLSKIVYNTPFDLVYNDLWGPAPVT 443
Query: 1900 STHGYKYYVSFIDHATRYTWFYLLKAKSDTYQAFINFKALVET*FEKKIKMVQSDGGGEF 2079
ST GY+YYV+F+D TR+TW YLLK K+ T+ F F A+V + IK +Q+D GGE+
Sbjct: 444 STCGYQYYVTFVDAHTRFTWIYLLKNKAQTFNVFKQFHAMVNNQYHHPIKALQTDWGGEY 503
Query: 2080 IALSQFFQTHGIHHRISCPYTPQQNGLAERKYMHIVEVGLALLAQSHLPMRFWPDAFCSS 2259
+ + + GI HR+ C +T QNG+ ERK+ HIVE+GL LLAQ+ LPM+FW AF +
Sbjct: 504 RSFTNYLNEVGIQHRLICRHTHHQNGVVERKHRHIVELGLTLLAQAELPMQFWDHAFLTG 563
Query: 2260 VYLINRTPSKILHYISPFEALAGNKPDYTSPRAFGCLCYPHLRSYNKHKL 2409
VYLINR PS + + P+ L PDY S R FGC C+PHLR YNKHKL
Sbjct: 564 VYLINRLPSSSIQNVVPYHKLFHQPPDYLSLRIFGCSCFPHLRPYNKHKL 613
Score = 100 bits (250), Expect(3) = e-116
Identities = 80/283 (28%), Positives = 115/283 (40%), Gaps = 1/283 (0%)
Frame = +2
Query: 473 VGLNSSSAIWSALKTNFASQTTAKVMQYRLQLQMLRKCTMPMREYLNKVKTCCDILAAAG 652
+G SS +W + + F S AK Q R +L+ + EY+ +++T D L A G
Sbjct: 22 IGCKSSFQLWDKIHSYFHSHMNAKARQLRNELRNTSLENQTISEYVLRIQTLVDALTAIG 81
Query: 653 EPVSEKDQVLYILSGLGSEYNPVLVSITSRITPCSLMETHALLLSFEN-RLEILDNFQIS 829
+ VS K+ + IL GL EY + I+SR ++ E LLL E+ L +N
Sbjct: 82 DSVSPKEHLDIILEGLPEEYESTVSLISSRFDLLTIDEVETLLLGHESPHLAHQENQSAF 141
Query: 830 PEGTASIXXXXXXXXXXXXXSGNRGRCSPTHXXXXXXXXXXXXXXXXXXXXXXCQISYRT 1009
+ G RGR + CQ+ +R
Sbjct: 142 SQRRGGRTNFRGGCFSNRAGRG-RGRFA----------------------GYQCQVCHRY 178
Query: 1010 NHTADKCFYRADLNYVPNSLTVNYVQSNINPQHGGNNQPQGASPSAAHNNASGSLISGSQ 1189
H A C+YR D YVP+S + N Q A+ S +NN
Sbjct: 179 GHVASACYYRFDETYVPSSPLEAPAYHSTN---------QHANTSVCNNN---------- 219
Query: 1190 VDLGYDNQWYPDSGASNHVTYDFGNLSIASEFQGDEKVHVGNG 1318
WYPDSGASNHVT N+ + F+G +++HVGNG
Sbjct: 220 --------WYPDSGASNHVTNVSQNIQQFTPFEGPDQIHVGNG 254
Score = 52.8 bits (125), Expect(3) = e-116
Identities = 21/45 (46%), Positives = 31/45 (68%)
Frame = +2
Query: 2411 FRSKPCTFIGYDTHYKGYKVLLPDNKIIITRDVVFDESVIPFANI 2545
FRS+ C F+GY T +KGYK L D ++ I+ DVVF+E+ P+ +
Sbjct: 615 FRSQECVFLGYSTSHKGYKCLAADERLYISNDVVFNETKFPYKEL 659
Score = 186 bits (471), Expect = 2e-44
Identities = 86/140 (61%), Positives = 112/140 (80%)
Frame = +2
Query: 2975 AMEKEFSALLKNGTWTLCELPSDRKLIGCKWVFKVKKDASGSIIKHKARLVAKGYTQLMG 3154
A E++ALL N TW+L LP R IGCKWVF+VK++ +G++ K+KARLVAKG+ Q G
Sbjct: 711 AAATEYNALLHNDTWSLVPLPPHRTAIGCKWVFRVKENPNGTVQKYKARLVAKGFNQQFG 770
Query: 3155 FDYTETFSPVIKPTTDRVVLSLAVTHSWPIRQIDIDNAFLNGDIDTELYMEQPPGFEDVR 3334
FDY ETFSPVIKP T R++L+LA+TH WPI+Q+D++NAFLNG ++ E+YM QPPGFE
Sbjct: 771 FDYHETFSPVIKPVTVRLILTLALTHRWPIQQLDVNNAFLNGTLEEEVYMTQPPGFE-AS 829
Query: 3335 GQHLVCKLHKSLYGLKQASR 3394
++LVCKLHK++YGLKQA R
Sbjct: 830 DKNLVCKLHKAIYGLKQAPR 849