BLASTX nr result
ID: Rehmannia27_contig00028520
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia27_contig00028520
(4739 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|KYP61022.1| Retrovirus-related Pol polyprotein from transposo... 811 0.0
gb|KYP34298.1| Retrovirus-related Pol polyprotein from transposo... 790 0.0
gb|KYP55668.1| Retrovirus-related Pol polyprotein from transposo... 791 0.0
gb|KYP43110.1| Retrovirus-related Pol polyprotein from transposo... 794 0.0
gb|KYP68426.1| Retrovirus-related Pol polyprotein from transposo... 795 0.0
gb|KYP70921.1| Retrovirus-related Pol polyprotein from transposo... 791 0.0
gb|KYP65734.1| Retrovirus-related Pol polyprotein from transposo... 779 0.0
emb|CAN82526.1| hypothetical protein VITISV_028058 [Vitis vinifera] 778 0.0
gb|KYP34293.1| Retrovirus-related Pol polyprotein from transposo... 782 0.0
gb|KHN01991.1| Retrovirus-related Pol polyprotein from transposo... 773 0.0
gb|KYP39497.1| Retrovirus-related Pol polyprotein from transposo... 774 0.0
emb|CAN73272.1| hypothetical protein VITISV_013115 [Vitis vinifera] 759 0.0
gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hop... 759 0.0
emb|CAN76546.1| hypothetical protein VITISV_010420 [Vitis vinifera] 758 0.0
gb|KYP37906.1| Retrovirus-related Pol polyprotein from transposo... 750 0.0
gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsi... 758 0.0
dbj|BAB10503.1| retroelement pol polyprotein-like [Arabidopsis t... 748 0.0
gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsi... 734 0.0
emb|CAN73437.1| hypothetical protein VITISV_031733 [Vitis vinifera] 721 0.0
gb|AAG10817.1|AC011808_5 Putative retroelement polyprotein [Arab... 719 0.0
>gb|KYP61022.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1316
Score = 811 bits (2095), Expect = 0.0
Identities = 413/866 (47%), Positives = 560/866 (64%), Gaps = 10/866 (1%)
Frame = +2
Query: 5 SHASSIFDLIHVDVWGPYASHSFCRTPYFLTVVDDHSRATWIYLMSHKTLVPKMLSTFLH 184
S+AS FDL+H+D+WGP + S YFLT+VDDH+R TW++LM +K+ + + F++
Sbjct: 460 SYASQPFDLLHMDIWGPCSVTSMHGHKYFLTIVDDHTRFTWLFLMQNKSETRQHIINFIN 519
Query: 185 MVHTQFNKRVKEIRSDNGTEFVSGECQSLFHTHGVIHQKACTYTPQQNGIVERKHRHLFD 364
V TQF+K VK IR+DNG EF F + G+IHQ C TPQQNGIVERKH+HL +
Sbjct: 520 QVETQFDKHVKVIRTDNGLEF---SMTQYFSSKGIIHQTTCVETPQQNGIVERKHQHLLN 576
Query: 365 IARALMFQSHLPSHFWVFSVLTAAYIINRLPSKLLHWKSPCEVLYGTKPDYSRMKPFGCL 544
+ R+L+FQ++LPS FW F+++ A ++IN +P+ LH SP E LYG D S + FGCL
Sbjct: 577 VTRSLLFQANLPSIFWCFALMHATFLINCIPTPFLHNISPFEKLYGHPCDISILCVFGCL 636
Query: 545 SFASNLTPHKDKFAPRAHKCVFLGYESGTKGYRLYNLDTNKIQISRDVHFVETQFP---- 712
++S +T H+ K PRAH C+FLG++ TKGY L+NL T+ + +SR+V F E FP
Sbjct: 637 CYSSTITSHRTKLDPRAHPCIFLGFKPHTKGYLLFNLHTHGLLVSRNVLFHEDHFPSFTK 696
Query: 713 -----YQXXXXXXXXXXXXPLF-NIPITESSHPDPVSPTLPSPQPVPSVPILRRSSRITK 874
+ P F + I ESS P P S SP P LRRS+R +
Sbjct: 697 PHSPSFSSPVPIHYNYVDYPTFPSSSIVESSDP-PTSDQHSSPPP------LRRSTRPRR 749
Query: 875 TPLWLNDFVTNAVTIGXXXXXXXXXXXXXXXXXYPVHTFPFHVSPLFHPTYIAFLANVSI 1054
P +L DF +P+H+F + L P++ ++ ++S
Sbjct: 750 PPTYLQDF--------HGAFTSTSTAHSSTGIRHPLHSFLSY--DLLSPSFHHYVFSISS 799
Query: 1055 LQEPHSYAEACKSVEWREAMGKELEALEENHTWELTSLPPGKKAIGCRWVFKVKMNSDGS 1234
+ EP ++AEA KS W +AM +E+ ALE N+TW LT+LPP K AIGCRWV+KVK +DGS
Sbjct: 800 VTEPKNFAEASKSDSWLKAMHEEIFALEANNTWVLTTLPPHKTAIGCRWVYKVKHKADGS 859
Query: 1235 VERYKARLVAKGYDQVYGDSYLDSFSPVAKQVTVRMLIALATKKHWMLDQLDINNAFLHG 1414
++RYKARLVAKGY Q+ G + D+FSPVAK TVR+L++LA +W L QLD+NNAFLHG
Sbjct: 860 IDRYKARLVAKGYTQMEGLDFFDTFSPVAKLTTVRLLLSLAAINNWHLKQLDVNNAFLHG 919
Query: 1415 YLDEDIYMHPPEGYTAALPGQVCHLKRSLYGLKQASRQWNVEFCDKLQGFGFHQSEHDHC 1594
L+E++YM P G T + PGQVC L+RSLYGLKQASRQW L G+ S DH
Sbjct: 920 DLNEEVYMQLPPGLTPSFPGQVCRLQRSLYGLKQASRQWYARLSSFLIQHGYVPSPSDHS 979
Query: 1595 LFIKATDSVFMALIVYVDDVLVTASQPDAIAELKTYLHDMFTIKDLGHAKYFLGLEIARS 1774
LF+K + + A+++YVDD+++ + I L + LH F IKDLG+ KYFLGLE+AR+
Sbjct: 980 LFLKCSPATTTAILIYVDDIVLAGNDLTEIHHLTSLLHTTFQIKDLGNLKYFLGLEVARN 1039
Query: 1775 SAGTYIHQRKYILDILKDVGLLDCKPASTPFPQGLRLRGEEGVALLEPDVYRRLIGRLLY 1954
G ++ QRKYILD+L D G+L KP STP + L G L + YRRL+GRL+Y
Sbjct: 1040 HTGIHLCQRKYILDLLSDTGMLASKPVSTPMDYSMHLSASSGTPLTDTAAYRRLVGRLIY 1099
Query: 1955 LNMSRPDVTYCVQQLSQFINKPYSSHWDAAIHLLRYLKGCPSKGLFYSSADSFHFEAYCD 2134
L +RPD+TY VQQLSQF++ P ++H A +LRYLKG P G+F S S A+ D
Sbjct: 1100 LTNTRPDITYAVQQLSQFVSNPTTAHRQALFRILRYLKGTPGSGIFLSVNSSVQLRAFSD 1159
Query: 2135 ADWATCLDTRKSLTGYCIFFGGSLVSWKTKKQLTVSKSSAEAEYRSMSQAVCELLWLSYI 2314
+DWA C DTR+S+TG+ ++ G SL+SWK+KKQ+TVS+SS+EAEYR+++ CEL WLSY+
Sbjct: 1160 SDWAGCPDTRRSITGFAVYLGDSLISWKSKKQITVSRSSSEAEYRALATTTCELQWLSYL 1219
Query: 2315 ATDLQVSFDLPIPLWCDNQAALYIVANPVFHERTKHVEIDCHVVRNQYKSGFVLPQKIST 2494
D + P L+CDNQ+AL I +NPVFHERTKH+EIDCH+VR++ +G + +S+
Sbjct: 1220 LKDFHIDPISPSILYCDNQSALQIASNPVFHERTKHIEIDCHIVRDKVSTGLLKLLPVSS 1279
Query: 2495 KLQLADMFTKPLGPAVFSAMLSKLGM 2572
QLAD+ TKPL P VF + SKLGM
Sbjct: 1280 SQQLADILTKPLSPFVFRSHCSKLGM 1305
Score = 191 bits (486), Expect = 1e-45
Identities = 145/520 (27%), Positives = 234/520 (45%), Gaps = 14/520 (2%)
Frame = +1
Query: 3214 LIAWLSVLNTISRDIVDAFLYADSARALWEDIVQRFGESNGPMIYQIQKDIATAAQGNLS 3393
+++WL ++++S I + L+ D A +W+D+ R+ + + + +Q + ++ QG+LS
Sbjct: 2 VVSWL--VHSVSPSIRQSILWMDQADDIWKDLKTRYSQGDLLRVSDLQLEASSLKQGDLS 59
Query: 3394 VVAYFTKLKRLWDEYSCLVPKSICTCGNG------KVVADNEMNTRLMQFLMGLNDSYEH 3555
V YFTKL+ LWDE P CTC ++A ++ + MQFL GLND Y +
Sbjct: 60 VTEYFTKLRILWDELENFRPDPNCTCTIKCACSVLTIIAQRKLEDQAMQFLRGLNDQYNN 119
Query: 3556 VRSQILIMEPLPSVNRAYSMILRIERQRTVQVAYPSAQEDVAMVAKIPSGGMRGRGYSPX 3735
V+S +L+MEP +++ +S +++ ERQ Q + D
Sbjct: 120 VKSHVLLMEP--PISKIFSYVVQQERQLLGQNFIANVHLD-------------------- 157
Query: 3736 XXXXXXXXXXXTREEKAQLMCDHCKIPGHEMNECFKLHGYPDWYKTYKEQRNRSMANMVE 3915
+ A C HC GH CF+ HG+P + + N+ +N
Sbjct: 158 --------RTSSINAVASPTCTHCNRTGHTDAVCFRKHGFP----STTNRSNKGSSNRPR 205
Query: 3916 SMSTSNAKVVLEEKPKEIVGSDMSGIIQKEIAKYLAAQIPLGNTTAA-EAGIDYAHFVSH 4092
+ T K G + QK + PL + TA+ + V+
Sbjct: 206 RICTHCGKT----------GHTIEVCYQKH--GFPPGSKPLSDKTASVNHTVTGDCKVTE 253
Query: 4093 AGTSLREYYALSSFDGV-----RDGSWILDTGASRHMCANELSMSHIQVLP--SSVSVFL 4251
+ SL +SF V SWILD+GA+ H+ + S+SH + + V L
Sbjct: 254 STQSLESQDVRTSFPIVCSAISTPSSWILDSGATDHVSS---SLSHFSSFSPINPIDVKL 310
Query: 4252 PDGSVKHVTHTGNVTISPSLILTDVLLVPSFKYNLLSVSQLIQTSNLKCVFYPTHCLLQD 4431
P G TH+G V + S L DVL +P+F YNL+S+S+L+ + + + +F C++Q+
Sbjct: 311 PTGQHVLATHSGTVKFTNSFYLVDVLYIPAFTYNLISISKLVSSLSCQLIFDHHSCIIQE 370
Query: 4432 LQTDKVVGMGKAVGRIFIMSLQPIKTDHFSFAKPVSFPSTCNNVLDDWHIKLGHASSGVL 4611
T K +G ++ + I H S + P +D WH ++GH S L
Sbjct: 371 TNTMKKIGTVDVNEGLYSFTASNI--HHPSTNSVIVHPKCSIQPIDLWHFRMGHLSHERL 428
Query: 4612 AHLDFLKSSFDDKQTLKNCEICHKAKQSRLPFPISDSHAS 4731
FL T +C CH AKQ +LPFP+S S+AS
Sbjct: 429 QSFPFL-----SVDTSFSCNTCHHAKQKKLPFPLSHSYAS 463
>gb|KYP34298.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1002
Score = 790 bits (2041), Expect = 0.0
Identities = 402/868 (46%), Positives = 559/868 (64%), Gaps = 9/868 (1%)
Frame = +2
Query: 11 ASSIFDLIHVDVWGPYASHSFCRTPYFLTVVDDHSRATWIYLMSHKTLVPKMLSTFLHMV 190
A IFDL+HVD+WGP S +FLT+VDD SR TW+Y M HK+ V LS+F+ ++
Sbjct: 143 ADEIFDLLHVDIWGPTTPASIFGHKFFLTIVDDKSRHTWVYFMKHKSEVADHLSSFITLI 202
Query: 191 HTQFNKRVKEIRSDNGTEFVSGECQSLFHTHGVIHQKACTYTPQQNGIVERKHRHLFDIA 370
QF K+VK +RSDNG EF+ ++ +H G++HQ +C TPQQNGIVERKH+H+ +A
Sbjct: 203 ENQFGKKVKCVRSDNGPEFL---LKNFYHEKGILHQTSCVETPQQNGIVERKHQHIMTVA 259
Query: 371 RALMFQSHLPSHFWVFSVLTAAYIINRLPSKLLHWKSPCEVLYGTKPDYSRMKPFGCLSF 550
RAL+ QS+LP FW ++V A ++INR PS L K P E++Y PD + +K FGCL++
Sbjct: 260 RALVMQSNLPKSFWFYAVSHAVFLINRQPSSFLENKIPYEIIYNALPDLAGIKVFGCLAY 319
Query: 551 ASNLTPHKDKFAPRAHKCVFLGYESGTKGYRLYNLDTNKIQISRDVHFVETQFPY-QXXX 727
A+ L ++ KF PR +CVFLG++ KG LY+L++ + +SR V + E FP+
Sbjct: 320 ATTLHHNRKKFDPRGRRCVFLGFKPQVKGSILYDLNSRETFLSRHVEYFEHIFPFLPTSP 379
Query: 728 XXXXXXXXXPLFNIPITESSHPDPVSP-TLPSPQPV---PSVPILRRSSRITKTPLWLND 895
P P+ + P P+S T P+ PV P P +R+S+R K P +L+D
Sbjct: 380 LDLTQTISLPRHQPPLPIDTDPTPLSTNTTPTSSPVSVVPPPPFVRKSTRPRKLPSYLHD 439
Query: 896 FVTNAVTIGXXXXXXXXXXXXXXXXXYPVHTFPFHVS-PLFHPTYIAFLANVSILQEPHS 1072
+ +T P+++ H+S P+ AF ++S ++EP+S
Sbjct: 440 YHHTLLTT-----------HNSPTISQPLYSIHNHISYSNLSPSQKAFSLSISSIKEPNS 488
Query: 1073 YAEACKSVEWREAMGKELEALEENHTWELTSLPPGKKAIGCRWVFKVKMNSDGSVERYKA 1252
Y EA + W+ A+ EL ALE+N+TW LT LPP K+ +GC+WVFK+K NSDG++ER+KA
Sbjct: 489 YVEAIQDESWKTAIQTELTALEKNNTWILTPLPPNKQVVGCKWVFKLKFNSDGTIERHKA 548
Query: 1253 RLVAKGYDQVYGDSYLDSFSPVAKQVTVRMLIALATKKHWMLDQLDINNAFLHGYLDEDI 1432
RLVAKGY Q YLD+FSPV K TVR L+A+AT K+W + QLD+N FLHG L E++
Sbjct: 549 RLVAKGYTQTETLDYLDTFSPVVKMTTVRTLLAVATAKNWHIHQLDVNTTFLHGDLHEEV 608
Query: 1433 YMHPPEGYTAALPGQ---VCHLKRSLYGLKQASRQWNVEFCDKLQGFGFHQSEHDHCLFI 1603
YM PP G T + P Q VC L +SLYGLKQASRQWN + L GF QS D+ LF
Sbjct: 609 YMTPPPGLTVS-PHQSNCVCKLVKSLYGLKQASRQWNAKLTSVLIDSGFKQSMADYSLFT 667
Query: 1604 KATDSVFMALIVYVDDVLVTASQPDAIAELKTYLHDMFTIKDLGHAKYFLGLEIARSSAG 1783
K + F A++VYVDD+++ + P I +K+ L FTIKDLG KYFLG+E+ARSS G
Sbjct: 668 KQFGAKFTAILVYVDDLVLAGNDPTEINYIKSLLDQKFTIKDLGQLKYFLGMEVARSSTG 727
Query: 1784 TYIHQRKYILDILKDVGLLDCKPASTPFPQGLRLRGEEGVALLEPDVYRRLIGRLLYLNM 1963
++QRKY LD+++D GLL KP +P ++L G L +P YRRL+GRL+YL
Sbjct: 728 IALYQRKYALDLIEDTGLLASKPCKSPMDHSVKLHKTVGTPLTDPTQYRRLLGRLIYLTN 787
Query: 1964 SRPDVTYCVQQLSQFINKPYSSHWDAAIHLLRYLKGCPSKGLFYSSADSFHFEAYCDADW 2143
+R D+++ V LSQF+++P H+ AA+ +L+Y+K P KGLF+ S+ + Y D+DW
Sbjct: 788 TRADISFSVNHLSQFMDQPTDVHYQAALRILKYVKNAPGKGLFFPSSSDLTLKGYSDSDW 847
Query: 2144 ATCLDTRKSLTGYCIFFGGSLVSWKTKKQLTVSKSSAEAEYRSMSQAVCELLWLSYIATD 2323
A+C DTR+S+TG+ F G +L+SWK+KKQ TVSKSSAEAEYR+++Q+ CE WLSY+ D
Sbjct: 848 ASCSDTRRSVTGFSFFLGPALISWKSKKQATVSKSSAEAEYRALAQSTCEAQWLSYLLHD 907
Query: 2324 LQVSFDLPIPLWCDNQAALYIVANPVFHERTKHVEIDCHVVRNQYKSGFVLPQKISTKLQ 2503
+ PI L+CDNQ+AL+I +NPVFHERTK++E+DCH+VR + + G + IST Q
Sbjct: 908 FGLHSFHPIVLFCDNQSALHIASNPVFHERTKNIELDCHIVREKLQVGLIHLLPISTADQ 967
Query: 2504 LADMFTKPLGPAVFSAMLSKLGMKDFLS 2587
LAD+FTK L F ++ KLGM D S
Sbjct: 968 LADVFTKALSLRPFEQIIFKLGMFDIHS 995
Score = 77.8 bits (190), Expect = 1e-10
Identities = 54/160 (33%), Positives = 81/160 (50%), Gaps = 9/160 (5%)
Frame = +1
Query: 4285 GNVTISPSLILTDVLLVPSFKYNLLSVSQLIQTSNLKCVFYPTHCLLQDLQTDKVVGMGK 4464
G++ S L DVL +P F +NL+SVS+LI+ + F C +QD Q+ K++G K
Sbjct: 1 GSIFFSEDFFLADVLYIPEFNFNLVSVSRLIRQLGCRLTFSGDLCDIQDSQSMKMIGAAK 60
Query: 4465 AVGRIFIMSLQPIKTDHFSFAKPVSFPSTCNNV----LDDWHIKLGHASSGVLAH--LDF 4626
++++ +P K + + NN D WHI+LGH LAH L
Sbjct: 61 HNMGLYVLDWKP---------KVCLYLHSVNNFHSYDNDLWHIRLGH-----LAHEKLQA 106
Query: 4627 LKSSF---DDKQTLKNCEICHKAKQSRLPFPISDSHASSI 4737
+KS+F D K+ C +C+ AKQ +LPF S + A I
Sbjct: 107 MKSNFPFIDCKKNKDPCNVCYLAKQRQLPFSHSVTKADEI 146
>gb|KYP55668.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1136
Score = 791 bits (2043), Expect = 0.0
Identities = 405/864 (46%), Positives = 554/864 (64%), Gaps = 8/864 (0%)
Frame = +2
Query: 5 SHASSIFDLIHVDVWGPYASHSFCRTPYFLTVVDDHSRATWIYLMSHKTLVPKMLSTFLH 184
S+A FDL+H+D+WGP S YFL +VDDH+R TW++LM +K+ + + F++
Sbjct: 281 SYALQPFDLLHMDIWGPCPVTSMHGHKYFLAIVDDHTRFTWLFLMQNKSETRQHIINFIN 340
Query: 185 MVHTQFNKRVKEIRSDNGTEFVSGECQSLFHTHGVIHQKACTYTPQQNGIVERKHRHLFD 364
V TQF+K VK IR+DNG EF F + G+IHQ C TPQQNGIVERKH+HL +
Sbjct: 341 QVETQFDKNVKVIRTDNGLEF---SMTQYFSSKGIIHQTTCVETPQQNGIVERKHQHLLN 397
Query: 365 IARALMFQSHLPSHFWVFSVLTAAYIINRLPSKLLHWKSPCEVLYGTKPDYSRMKPFGCL 544
+ R+L+FQ++LPS FW F++ AA++IN +P+ LH SP E LYG D S ++ FGCL
Sbjct: 398 VTRSLLFQANLPSIFWCFALKHAAFLINCIPTPFLHNISPFEKLYGHPCDISILRVFGCL 457
Query: 545 SFASNLTPHKDKFAPRAHKCVFLGYESGTKGYRLYNLDTNKIQISRDVHFVETQFPYQXX 724
++S +T H+ K PRAH C+FLG++ TKGY L NL T+ + +S++V F E FP
Sbjct: 458 CYSSIITSHRTKLDPRAHPCIFLGFKPHTKGYLLVNLHTHGLLVSQNVIFHEDHFPSFTK 517
Query: 725 XXXXXXXXXXPLFNIPITESSHPD-PVSPTLPSPQPVP-----SVPILRRSSRITKTPLW 886
P IP + +P P S + S +P P S P LRRS+R + P +
Sbjct: 518 PNSPSFSSPVP---IPYNYADYPSFPSSSIVESSEPPPPDQHSSPPPLRRSTRPRRPPTY 574
Query: 887 LNDFVTNAVTIGXXXXXXXXXXXXXXXXXYPVHTFPFH--VSPLFHPTYIAFLANVSILQ 1060
L DF + G +P+H+F + +SP FH ++ ++S +
Sbjct: 575 LQDFHGAFTSTGPHSSTGIR---------HPLHSFISYDRLSPSFHH----YVFSISSVT 621
Query: 1061 EPHSYAEACKSVEWREAMGKELEALEENHTWELTSLPPGKKAIGCRWVFKVKMNSDGSVE 1240
+P ++ EA KS W +AM +E+ ALE N+TW LT+LPP K AIGCRWV+KVK +DGS++
Sbjct: 622 KPKNFVEASKSDSWLKAMHEEISALEANNTWVLTTLPPHKTAIGCRWVYKVKHKADGSID 681
Query: 1241 RYKARLVAKGYDQVYGDSYLDSFSPVAKQVTVRMLIALATKKHWMLDQLDINNAFLHGYL 1420
RYKARLVAKGY Q+ G + D+FSPVAK TVR+LI+LA + L QLD+NN+FLHG L
Sbjct: 682 RYKARLVAKGYTQMEGLDFFDTFSPVAKLTTVRLLISLAAIHNCHLKQLDVNNSFLHGDL 741
Query: 1421 DEDIYMHPPEGYTAALPGQVCHLKRSLYGLKQASRQWNVEFCDKLQGFGFHQSEHDHCLF 1600
+E++YM P G T + PGQVC L+RSLYGLKQASRQW L G+ S DH LF
Sbjct: 742 NEEVYMQLPPGITPSFPGQVCRLQRSLYGLKQASRQWYARLSSFLIQHGYVPSPSDHSLF 801
Query: 1601 IKATDSVFMALIVYVDDVLVTASQPDAIAELKTYLHDMFTIKDLGHAKYFLGLEIARSSA 1780
+K + ++ A+++YVDD+++ + I L + LH+ F IKDLG+ KYFLGLE+AR+
Sbjct: 802 LKCSPAITTAILIYVDDIVLAGNDLTEIHHLTSLLHNTFQIKDLGNLKYFLGLEVARNHT 861
Query: 1781 GTYIHQRKYILDILKDVGLLDCKPASTPFPQGLRLRGEEGVALLEPDVYRRLIGRLLYLN 1960
G ++ QRKY LD+L D G+L KP STP L G + YRRL+GRL+YL
Sbjct: 862 GIHLCQRKYTLDLLSDTGMLASKPVSTPMDYSTHLSASSGTPFTDTAAYRRLVGRLIYLP 921
Query: 1961 MSRPDVTYCVQQLSQFINKPYSSHWDAAIHLLRYLKGCPSKGLFYSSADSFHFEAYCDAD 2140
+RP + Y VQQLSQF++ P ++H A +L YLKG P G+F S S A+ D D
Sbjct: 922 NTRPAIAYAVQQLSQFVSNPPTAHRQALFRILCYLKGTPGSGIFLSVNSSVQLRAFSDYD 981
Query: 2141 WATCLDTRKSLTGYCIFFGGSLVSWKTKKQLTVSKSSAEAEYRSMSQAVCELLWLSYIAT 2320
WA C DTR+S+TG+ ++ G SL+SWK+KKQ+TVS+SS+EAEYR+++ CEL WLSY+
Sbjct: 982 WAGCPDTRRSITGFAVYLGDSLISWKSKKQITVSRSSSEAEYRALATTTCELQWLSYLLK 1041
Query: 2321 DLQVSFDLPIPLWCDNQAALYIVANPVFHERTKHVEIDCHVVRNQYKSGFVLPQKISTKL 2500
D + P L+CDNQ AL I +NP+FHERTKH+EIDCH+VR++ +G + +S+ L
Sbjct: 1042 DFHIDLIRPSILYCDNQFALQIASNPIFHERTKHIEIDCHIVRDKVSTGLLKLLPVSSSL 1101
Query: 2501 QLADMFTKPLGPAVFSAMLSKLGM 2572
QLAD+ TKPL P VF + SKLGM
Sbjct: 1102 QLADILTKPLSPFVFHSHYSKLGM 1125
Score = 112 bits (280), Expect = 3e-21
Identities = 86/313 (27%), Positives = 134/313 (42%), Gaps = 2/313 (0%)
Frame = +1
Query: 3796 CDHCKIPGHEMNECFKLHGYPDWYKTYKEQRNRSMANMVESMSTSNAKVVLEEKPKEIVG 3975
C HC GH + C++ HG+P K ++ V T + KV E + +
Sbjct: 1 CTHCGKTGHTIEVCYQKHGFPPGSKPLSDK-----TASVNHTVTGDCKVT--ESTQSLES 53
Query: 3976 SDMSGIIQKEIAKYLAAQIPLGNTTAAEAGIDYAHFVSHAGTSLREYYALSSFDGVRDGS 4155
D+ Q+ A L A I T + + + S T S
Sbjct: 54 QDVRFTPQQYQA--LLALIQQSTTGTSASCTSFPIVCSAISTP---------------SS 96
Query: 4156 WILDTGASRHMCANELSMSHIQVLPSSVSVFLPDGSVKHVTHTGNVTISPSLILTDVLLV 4335
WILD+GA+ H+ + S + + + V LP G TH+G V + S L DVL +
Sbjct: 97 WILDSGATDHVSSTLSHFSSFSPI-NPIDVKLPTGQHVSATHSGIVKFTNSFYLVDVLYI 155
Query: 4336 PSFKYNLLSVSQLIQTSNLKCVFYPTHCLLQDLQTDKVVGMGKAVGRIFIMSLQPIKTDH 4515
P F YNL+S+S+L+ + + + +F C++Q+ T K +G G ++ + I
Sbjct: 156 PDFTYNLISISKLVSSLSCQFIFDRHSCIIQETNTMKKIGTVDVNGGLYSFTANNIHNP- 214
Query: 4516 FSFAKPVSFPSTCNNVLDDWHIKLGHASSGVLAHLDFLKSSFDDKQTLK--NCEICHKAK 4689
S + P +D WH ++GH S L +K SF K +C CH K
Sbjct: 215 -STNSIIVHPKCSIQPIDLWHFRMGHLSQ---ERLQLMKQSFPFLSVDKSFSCNTCHHDK 270
Query: 4690 QSRLPFPISDSHA 4728
Q +L FP+S S+A
Sbjct: 271 QKKLSFPLSHSYA 283
>gb|KYP43110.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1353
Score = 794 bits (2050), Expect = 0.0
Identities = 404/883 (45%), Positives = 566/883 (64%), Gaps = 26/883 (2%)
Frame = +2
Query: 11 ASSIFDLIHVDVWGPYASHSFCRTPYFLTVVDDHSRATWIYLMSHKTLVPKMLSTFLHMV 190
+ ++FDLIHVD+WGP + S YFLT+VDD SR TWI+ M +K +L F+ V
Sbjct: 475 SENVFDLIHVDIWGPLSVASIFGHKYFLTIVDDKSRFTWIFFMKNKFETKLLLQNFVSFV 534
Query: 191 HTQFNKRVKEIRSDNGTEFVSGECQSLFHTHGVIHQKACTYTPQQNGIVERKHRHLFDIA 370
TQF + +K IR+DNG+EF+ + + G++HQ +C TPQQNG+VERKH+H+ +A
Sbjct: 535 QTQFQQNIKTIRTDNGSEFL---LKDWYAKLGIVHQTSCVNTPQQNGVVERKHQHILSMA 591
Query: 371 RALMFQSHLPSHFWVFSVLTAAYIINRLPSKLLHWKSPCEVLYGTKPDYSRMKPFGCLSF 550
RALMFQS++ FW +++ A ++INRLP++ L SP VLY KPD+S +K FGCL+F
Sbjct: 592 RALMFQSNVSKMFWNYAIGHAVHLINRLPTRFLQQNSPYYVLYSEKPDFSHLKVFGCLAF 651
Query: 551 ASNLTPHKDKFAPRAHKCVFLGYESGTKGYRLYNLDTNKIQISRDVHFVETQFPYQXXXX 730
AS L+ ++ K PR+ KC+FLGY SGTKG+ +Y+L T + ISRDV F E FP Q
Sbjct: 652 ASTLSHNRTKLEPRSRKCMFLGYSSGTKGFIMYDLKTRETFISRDVQFYENIFPLQKDFS 711
Query: 731 XXXXXXXX-PLFNIPITESSHPDPV----------------SPTLP--------SPQPVP 835
P+ +P+T DP+ S TLP P
Sbjct: 712 IQSTDGPVVPIAQMPLTSC---DPIPSHTHDNLDETEHEHNSSTLPMTNSSNSDQPNIEI 768
Query: 836 SVPILRRSS-RITKTPLWLNDFVTNAVTIGXXXXXXXXXXXXXXXXXYPVHTFPFHVSPL 1012
++P +RR+S R+ P +L D+ YP+ + + S
Sbjct: 769 NIPEIRRTSQRVKNRPGYLQDYHCTLAA--------SKVDQSSSTARYPISDYLPYTS-- 818
Query: 1013 FHPTYIAFLANVSILQEPHSYAEACKSVEWREAMGKELEALEENHTWELTSLPPGKKAIG 1192
+ +F++ +S + EP SY +A W+EA+ EL+AL++ TW LT LPP K+A+G
Sbjct: 819 YSAVQQSFVSTISSIIEPRSYQDAINHDCWKEAIRAELDALDKQKTWILTDLPPNKRAVG 878
Query: 1193 CRWVFKVKMNSDGSVERYKARLVAKGYDQVYGDSYLDSFSPVAKQVTVRMLIALATKKHW 1372
CRWVFKVK ++DGSVERYKARLVAKG+ Q+ G Y+D+FSPV + T+R+ +A+A +W
Sbjct: 879 CRWVFKVKYHADGSVERYKARLVAKGFTQIPGLDYIDTFSPVVRMTTIRVFLAIAAASNW 938
Query: 1373 MLDQLDINNAFLHGYLDEDIYMHPPEGYTAALPGQVCHLKRSLYGLKQASRQWNVEFCDK 1552
+ QLDIN AFLHG L E++YM PP G + P +VC L++SLYGLKQ SRQWN++ +
Sbjct: 939 SVHQLDINTAFLHGDLVEEVYMKPPPGLILSSPNKVCKLQKSLYGLKQVSRQWNIKLTET 998
Query: 1553 LQGFGFHQSEHDHCLFIKATDSVFMALIVYVDDVLVTASQPDAIAELKTYLHDMFTIKDL 1732
L+ FGF QS+ D+ LF K T+ F+A++VYVDD++++ S I ++K L F+IKDL
Sbjct: 999 LKLFGFVQSKSDYSLFTKRTNIGFIAILVYVDDLIISGSDETEIMKVKRLLDKQFSIKDL 1058
Query: 1733 GHAKYFLGLEIARSSAGTYIHQRKYILDILKDVGLLDCKPASTPFPQGLRLRGEEGVALL 1912
G YFLGLE +RS G + QRKY L++L+D GLL KP STP RL +
Sbjct: 1059 GQLSYFLGLEFSRSDQGISVCQRKYALELLQDTGLLASKPCSTPMDHTTRLHHDPLDLYS 1118
Query: 1913 EPDVYRRLIGRLLYLNMSRPDVTYCVQQLSQFINKPYSSHWDAAIHLLRYLKGCPSKGLF 2092
+P YRRL+GRL+YL +RPD+ + V +LSQF+++P ++H+ AA +LRY+K P+KGLF
Sbjct: 1119 DPSSYRRLVGRLIYLTHTRPDLAFAVGKLSQFMHQPNNAHFQAARKVLRYVKATPTKGLF 1178
Query: 2093 YSSADSFHFEAYCDADWATCLDTRKSLTGYCIFFGGSLVSWKTKKQLTVSKSSAEAEYRS 2272
+ S+ Y D+DWATC D+R+S++G+C F G +LVSWK+KKQ VS+SS+EAEYR+
Sbjct: 1179 FPSSSDLKLTGYTDSDWATCPDSRRSISGFCFFLGNALVSWKSKKQNVVSRSSSEAEYRA 1238
Query: 2273 MSQAVCELLWLSYIATDLQVSFDLPIPLWCDNQAALYIVANPVFHERTKHVEIDCHVVRN 2452
++ VCE WL + TD Q+ +PI L+CDNQ+ALYI ANPVFHERTKHVEIDCH VR+
Sbjct: 1239 LALGVCEAQWLHKLLTDFQLQDLIPISLFCDNQSALYIAANPVFHERTKHVEIDCHTVRD 1298
Query: 2453 QYKSGFVLPQKISTKLQLADMFTKPLGPAVFSAMLSKLGMKDF 2581
Q ++GF+ I++ QLAD+ TKPL P +F + KLG+ +F
Sbjct: 1299 QVQAGFIHLAPITSSGQLADILTKPLLPKMFQDFVCKLGLSNF 1341
Score = 184 bits (467), Expect = 3e-43
Identities = 136/513 (26%), Positives = 238/513 (46%), Gaps = 5/513 (0%)
Frame = +1
Query: 3214 LIAWLSVLNTISRDIVDAFLYADSARALWEDIVQRFGESNGPMIYQIQKDIATAAQGNLS 3393
+I+W ++ ++ ++ + ++ +A +W D+ +R+ + + I ++ ++I + QGN+S
Sbjct: 38 VISW--IVQSLDTSLIPSVIWMPTASQIWNDLKKRYYQGDAFRISELLEEIYSLKQGNMS 95
Query: 3394 VVAYFTKLKRLWDEYSCLVPKSICTCGNGKVVADNEMNTRLMQFLMGLNDSYEHVRSQIL 3573
+ YFT L+ LW E P CTC TR FL GLN+ Y +VRSQ++
Sbjct: 96 ITHYFTTLQGLWQELDHFCPIPSCTC----------FTTR---FLKGLNEQYSNVRSQVM 142
Query: 3574 IMEPLPSVNRAYSMILRIERQRTVQVAYPSAQEDVAMVAKIPSGGMRGRGYSPXXXXXXX 3753
+M+PLPSV + +SMIL+ ER+ + ++ V + S R
Sbjct: 143 LMDPLPSVQKVFSMILQQERE------FHGTNDN--QVLAVTSNNERNN--------YKG 186
Query: 3754 XXXXXTREEKAQLMCDHCKIPGHEMNECFKLHGYPDWYKTYKEQRNRSMANMVESMSTSN 3933
++ +C HC GH ++ C+K HG P + ++ + N +S+S +
Sbjct: 187 SKTFKRNKDYNTKVCSHCGRIGHLVDSCYKKHGPP------LQHKHGRIVNQYQSVSDED 240
Query: 3934 AKVVLEEKPKEIVGSDMSGIIQKEIAKYLAAQIPLGNTTAAEAGIDYAHFVSHAGTSLRE 4113
+ +V + + E + L A + ++G+ + SH
Sbjct: 241 TDDDQSVHSQRVVSHNSGNMFTPEQHQALLALLQ-------QSGMILSFPYSH------- 286
Query: 4114 YYALSSFDGVRDGSWILDTGASRHMCAN-ELSMSHIQVLPSSVSVFLPDGSVKHVTHTGN 4290
WI+DTGA+ H+C N S+ ++ P + + LP+GS +G
Sbjct: 287 ----------NSDCWIIDTGATDHVCKNINFFQSYRRIKP--ILIQLPNGSQVSTCVSGT 334
Query: 4291 VTISPSLILTDVLLVPSFKYNLLSVSQLIQTSNLKCVFYPTHCLLQDLQTDKVVGMGKAV 4470
V +S + LTDVL +P+F +NL+SVS+L +T + F + C +Q + +++G +
Sbjct: 335 VLLSKTCYLTDVLFIPNFHFNLISVSKLAKTLSCTLTFSDSDCQIQANHSMRMIGAAELR 394
Query: 4471 GRIFIMSLQP-IKTDHFSFAKPVSFPSTCNNVLDDWHIKLGHASSGVLAHLDFLKSSFDD 4647
++ M P H + ++ S D WH++LGH S L LK S+ +
Sbjct: 395 AGLYAMVSSPESNVVHHCTSHFFTYQS------DLWHLRLGHLSHD---KLSALKGSYPE 445
Query: 4648 KQTLK---NCEICHKAKQSRLPFPISDSHASSI 4737
Q K CEICH AK RLPFP S + + ++
Sbjct: 446 IQCNKISLPCEICHLAKHKRLPFPDSLTKSENV 478
>gb|KYP68426.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1423
Score = 795 bits (2054), Expect = 0.0
Identities = 405/883 (45%), Positives = 567/883 (64%), Gaps = 26/883 (2%)
Frame = +2
Query: 11 ASSIFDLIHVDVWGPYASHSFCRTPYFLTVVDDHSRATWIYLMSHKTLVPKMLSTFLHMV 190
+ ++FDLIHVD+WGP + S YFLT+VDD SR TWI+ M +K +L F+ V
Sbjct: 545 SENVFDLIHVDIWGPLSVASIFGHKYFLTIVDDKSRFTWIFFMKNKFETKLLLQNFVSFV 604
Query: 191 HTQFNKRVKEIRSDNGTEFVSGECQSLFHTHGVIHQKACTYTPQQNGIVERKHRHLFDIA 370
TQF + +K IR+DNG+EF+ + + G++HQ +C TPQQNG+VERKH+H+ +A
Sbjct: 605 QTQFQQNIKTIRTDNGSEFL---LKDWYAKLGIVHQTSCVNTPQQNGVVERKHQHILSMA 661
Query: 371 RALMFQSHLPSHFWVFSVLTAAYIINRLPSKLLHWKSPCEVLYGTKPDYSRMKPFGCLSF 550
RALMFQS++ FW +++ A ++INRLP++ L SP VLY KPD+S +K FGCL+F
Sbjct: 662 RALMFQSNVSKMFWNYAIGHAVHLINRLPTRFLQQNSPYYVLYSEKPDFSHLKVFGCLAF 721
Query: 551 ASNLTPHKDKFAPRAHKCVFLGYESGTKGYRLYNLDTNKIQISRDVHFVETQFPYQXXXX 730
AS L+ ++ K PR+ KC+FLGY SGTKG+ +Y+L T + ISRDV F E FP Q
Sbjct: 722 ASTLSHNRTKLEPRSRKCMFLGYSSGTKGFIMYDLKTRETFISRDVQFYENIFPLQKDFS 781
Query: 731 XXXXXXXX-PLFNIPITESSHPDPV----------------SPTLP--------SPQPVP 835
P+ +P+T DP+ S TLP P
Sbjct: 782 IQSTDGPVVPIAQMPLTSC---DPIPSHTHDNLDETEHEHNSSTLPMTNSSNSDQPNIEI 838
Query: 836 SVPILRRSS-RITKTPLWLNDFVTNAVTIGXXXXXXXXXXXXXXXXXYPVHTFPFHVSPL 1012
++P +RR+S R+ P +L D+ YP+ + + S
Sbjct: 839 NIPEIRRTSQRVKNRPGYLQDYHCTLAA--------SKVDQSSSTARYPISDYLPYTS-- 888
Query: 1013 FHPTYIAFLANVSILQEPHSYAEACKSVEWREAMGKELEALEENHTWELTSLPPGKKAIG 1192
+ +F++ +S + EP SY +A W+EA+ EL+AL++ TW LT LPP K+A+G
Sbjct: 889 YSAVQQSFVSTISSIIEPRSYQDAINHDCWKEAIRAELDALDKQKTWILTDLPPNKRAVG 948
Query: 1193 CRWVFKVKMNSDGSVERYKARLVAKGYDQVYGDSYLDSFSPVAKQVTVRMLIALATKKHW 1372
CRWVFKVK ++DGSVERYKARLVAKG+ Q+ G Y+D+FSPV + T+R+ +A+A +W
Sbjct: 949 CRWVFKVKYHADGSVERYKARLVAKGFTQIPGLDYIDTFSPVVRMTTIRVFLAIAAASNW 1008
Query: 1373 MLDQLDINNAFLHGYLDEDIYMHPPEGYTAALPGQVCHLKRSLYGLKQASRQWNVEFCDK 1552
+ QLDIN AFLHG L E++YM PP G + P +VC L++SLYGLKQASRQWN++ +
Sbjct: 1009 SVHQLDINTAFLHGDLVEEVYMKPPPGLILSSPNKVCKLQKSLYGLKQASRQWNIKLTET 1068
Query: 1553 LQGFGFHQSEHDHCLFIKATDSVFMALIVYVDDVLVTASQPDAIAELKTYLHDMFTIKDL 1732
L+ FGF QS+ D+ LF K T+ F+A++VYVDD++++ S I ++K L F+IKDL
Sbjct: 1069 LKLFGFVQSKSDYSLFTKRTNIGFIAILVYVDDLIISGSDETEIMKVKRLLDKQFSIKDL 1128
Query: 1733 GHAKYFLGLEIARSSAGTYIHQRKYILDILKDVGLLDCKPASTPFPQGLRLRGEEGVALL 1912
G YFLGLE +RS G + QRKY L++L+D GLL KP STP RL +
Sbjct: 1129 GQLSYFLGLEFSRSDQGISVCQRKYALELLQDTGLLASKPCSTPMDHTTRLHHDPLDLYS 1188
Query: 1913 EPDVYRRLIGRLLYLNMSRPDVTYCVQQLSQFINKPYSSHWDAAIHLLRYLKGCPSKGLF 2092
+P YRRL+GRL+YL +RPD+ + V +LSQF+++P ++H+ AA +LRY+K P+KGLF
Sbjct: 1189 DPSSYRRLVGRLIYLTHTRPDLAFAVGKLSQFMHQPNNAHFQAARKVLRYVKATPTKGLF 1248
Query: 2093 YSSADSFHFEAYCDADWATCLDTRKSLTGYCIFFGGSLVSWKTKKQLTVSKSSAEAEYRS 2272
+ S+ Y D+DWATC D+R+S++G+C F G +LVSWK+KKQ VS+SS+EAEYR+
Sbjct: 1249 FPSSSDLKLTGYTDSDWATCPDSRRSISGFCFFLGNALVSWKSKKQNVVSRSSSEAEYRA 1308
Query: 2273 MSQAVCELLWLSYIATDLQVSFDLPIPLWCDNQAALYIVANPVFHERTKHVEIDCHVVRN 2452
++ VCE WL + TD Q+ +PI L+CDNQ+ALYI ANPVFHERTKHVEIDCH VR+
Sbjct: 1309 LALGVCEAQWLHKLLTDFQLQDLIPISLFCDNQSALYIAANPVFHERTKHVEIDCHTVRD 1368
Query: 2453 QYKSGFVLPQKISTKLQLADMFTKPLGPAVFSAMLSKLGMKDF 2581
Q ++GF+ I++ QLAD+ TKPL P +F + KLG+ +F
Sbjct: 1369 QVQAGFIHLAPITSSGQLADILTKPLLPKMFQDFVCKLGLSNF 1411
Score = 191 bits (486), Expect(2) = 8e-55
Identities = 139/518 (26%), Positives = 245/518 (47%), Gaps = 10/518 (1%)
Frame = +1
Query: 3214 LIAWLSVLNTISRDIVDAFLYADSARALWEDIVQRFGESNGPMIYQIQKDIATAAQGNLS 3393
+I+W ++ ++ ++ + ++ +A +W D+ +R+ + + I ++ ++I + QGN+S
Sbjct: 81 VISW--IVQSLDTSLIPSVIWMPTASQIWNDLKKRYYQGDAFRISELLEEIYSLKQGNMS 138
Query: 3394 VVAYFTKLKRLWDEYSCLVPKSICTCGNGKVVADNEMNTRLMQFLMGLNDSYEHVRSQIL 3573
+ YFT L+ LW E P CTC + V ++FL GLN+ Y +VRSQ++
Sbjct: 139 ITHYFTTLQGLWQELDHFCPIPSCTCFTTECV---------IRFLKGLNEQYSNVRSQVM 189
Query: 3574 IMEPLPSVNRAYSMILRIERQRTVQVAYPSAQEDVAMVAKIPSGGMRGRGYSPXXXXXXX 3753
+M+PLPSV + +SMIL+ ER+ + ++ V + S R
Sbjct: 190 LMDPLPSVQKVFSMILQQERE------FHGTNDN--QVLAVTSNNERNN--------YKG 233
Query: 3754 XXXXXTREEKAQLMCDHCKIPGHEMNECFKLHGYPDWYKTYKEQRNRSMANMVESMSTSN 3933
++ +C HC GH ++ C+K HG P + ++ + N +S+S +
Sbjct: 234 SKTFKRNKDYNTKVCSHCGRIGHLVDSCYKKHGPP------LQHKHGRIVNQYQSVSDED 287
Query: 3934 AKVVLEEKPKEIVGSDMSGIIQKEIAKYLAAQIPLGNTTAAE-----AGIDYAHFVSHAG 4098
+ +V + + E + L A + +T++ AG G
Sbjct: 288 TDDDQSVHSQRVVSHNSGNMFTPEQHQALLALLQQSGSTSSHSVNQLAGPSILSSPKPPG 347
Query: 4099 TSLREYYALSSFDGVRDGSWILDTGASRHMCAN-ELSMSHIQVLPSSVSVFLPDGSVKHV 4275
L Y+ +S WI+DTGA+ H+C N S+ ++ P + + LP+GS
Sbjct: 348 MILSFPYSHNS------DCWIIDTGATDHVCKNINFFQSYRRIKP--ILIQLPNGSQVST 399
Query: 4276 THTGNVTISPSLILTDVLLVPSFKYNLLSVSQLIQTSNLKCVFYPTHCLLQDLQTDKVVG 4455
+G V +S + LTDVL +P+F +NL+SVS+L +T + F + C +Q + +++G
Sbjct: 400 CVSGTVLLSKTCYLTDVLFIPNFHFNLISVSKLAKTLSCTLTFSDSDCQIQANHSMRMIG 459
Query: 4456 MGKAVGRIFIMSLQP-IKTDHFSFAKPVSFPSTCNNVLDDWHIKLGHASSGVLAHLDFLK 4632
+ ++ M P H + ++ S D WH++LGH S L LK
Sbjct: 460 AAELRAGLYAMVSSPESNVVHHCTSHFFTYQS------DLWHLRLGHLSHD---KLSALK 510
Query: 4633 SSFDDKQTLK---NCEICHKAKQSRLPFPISDSHASSI 4737
S+ + Q K CEICH AK RLPFP S + + ++
Sbjct: 511 GSYPEIQCNKISLPCEICHLAKHKRLPFPDSLTKSENV 548
Score = 54.3 bits (129), Expect(2) = 8e-55
Identities = 26/70 (37%), Positives = 41/70 (58%)
Frame = +3
Query: 3024 PYQLHGSDHPGLILVSNILTGNNFLSWSRSMVIALSAKAKLGFINGKIEAPKEDSPKYEN 3203
PY L +++P + LVS L +N+LSWS+SM++ L K KL FI+G + P
Sbjct: 14 PYFLPSNENPSISLVSAPLNDHNYLSWSQSMLLVLGTKNKLAFIDGSLARPVTAGVDQTA 73
Query: 3204 WRKVDCMVVS 3233
W + + +V+S
Sbjct: 74 WDRCNKLVIS 83
>gb|KYP70921.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1352
Score = 791 bits (2044), Expect = 0.0
Identities = 406/870 (46%), Positives = 549/870 (63%), Gaps = 9/870 (1%)
Frame = +2
Query: 5 SHASSIFDLIHVDVWGPYASHSFCRTPYFLTVVDDHSRATWIYLMSHKTLVPKMLSTFLH 184
SHA F L+H+D+WGP + S YFLT+VDDH+R TW++LM+ K ++ F+
Sbjct: 491 SHALQSFALLHIDIWGPCSKTSIHGHRYFLTIVDDHTRYTWVFLMASKADTCNCVTNFIS 550
Query: 185 MVHTQFNKRVKEIRSDNGTEFVSGECQSLFHTHGVIHQKACTYTPQQNGIVERKHRHLFD 364
+ QF RVK IR+DNG EF + F + G+IHQ C TP+QN IVERKH+HL +
Sbjct: 551 HIENQFATRVKVIRTDNGAEF---SMNNYFDSKGIIHQTTCIETPEQNRIVERKHQHLLN 607
Query: 365 IARALMFQSHLPSHFWVFSVLTAAYIINRLPSKLLHWKSPCEVLYGTKPDYSRMKPFGCL 544
+ RAL+FQS+LP FW F+++ A YIIN +P+ L SP E L G D + ++ FGCL
Sbjct: 608 VTRALLFQSNLPPTFWNFALMHATYIINCIPTPFLQHTSPFENLNGKPCDITTLRVFGCL 667
Query: 545 SFASNLTPHKDKFAPRAHKCVFLGYESGTKGYRLYNLDTNKIQISRDVHFVETQFPY--- 715
+ S L H+ K PRA CVFLG++ TKGY +NL+T I++SR+V F E FPY
Sbjct: 668 CYVSTLKAHRTKLDPRASPCVFLGFQPHTKGYLTFNLNTRSIEVSRNVVFYENHFPYFTQ 727
Query: 716 QXXXXXXXXXXXXPLFNIPITESSHPDPVSPT------LPSPQPVPSVPILRRSSRITKT 877
P + P+ + P SP+ L SP+ S PI R +R
Sbjct: 728 DTQSASSTPSLPTPFTSNPMIHDYNFYPPSPSSHPPHSLSSPESPTSSPIPSRPTRSRHP 787
Query: 878 PLWLNDFVTNAVTIGXXXXXXXXXXXXXXXXXYPVHTFPFHVSPLFHPTYIAFLANVSIL 1057
P +L D+ + G YP+ + + L HP + F+ ++S+L
Sbjct: 788 PSYLRDYHMTFTSTGPSSSPGIR---------YPLDSV-ISYNRLSHP-FRHFIMSISLL 836
Query: 1058 QEPHSYAEACKSVEWREAMGKELEALEENHTWELTSLPPGKKAIGCRWVFKVKMNSDGSV 1237
EP SYAEA KS W +AM E+ ALE N+TW +TSLPP K AIGC+W++KVK ++DGSV
Sbjct: 837 TEPKSYAEASKSDCWIKAMTDEITALEANNTWTVTSLPPHKTAIGCKWIYKVKHHADGSV 896
Query: 1238 ERYKARLVAKGYDQVYGDSYLDSFSPVAKQVTVRMLIALATKKHWMLDQLDINNAFLHGY 1417
ER+KARLVAKGY Q+ G +LD+F+PVAK TV +L++LA +W L QLDINNAFLHG
Sbjct: 897 ERHKARLVAKGYTQLEGLDFLDTFAPVAKLTTVHLLLSLAAIHNWFLKQLDINNAFLHGD 956
Query: 1418 LDEDIYMHPPEGYTAALPGQVCHLKRSLYGLKQASRQWNVEFCDKLQGFGFHQSEHDHCL 1597
L+E++YMH P G T PGQVC L RSLYGLKQASRQW + GFH S DH L
Sbjct: 957 LNEEVYMHLPPGLTTTTPGQVCKLNRSLYGLKQASRQWYARLSTFIMQQGFHHSSADHSL 1016
Query: 1598 FIKATDSVFMALIVYVDDVLVTASQPDAIAELKTYLHDMFTIKDLGHAKYFLGLEIARSS 1777
F+K T+S AL+VYVDD+++ + I ++ LH F IKDLG YFLGLE+AR+S
Sbjct: 1017 FLKFTNSACTALLVYVDDIVLAGNDLTEIHQITALLHKTFKIKDLGDLTYFLGLEVARNS 1076
Query: 1778 AGTYIHQRKYILDILKDVGLLDCKPASTPFPQGLRLRGEEGVALLEPDVYRRLIGRLLYL 1957
++ QRKY LDIL D G+L C P+ST L + G L +P YR+LIGRL+YL
Sbjct: 1077 IEIHLCQRKYTLDILSDTGMLACCPSSTLMDYKAALSSDTGTPLTDPSAYRQLIGRLIYL 1136
Query: 1958 NMSRPDVTYCVQQLSQFINKPYSSHWDAAIHLLRYLKGCPSKGLFYSSADSFHFEAYCDA 2137
+ PD+T+ VQ LSQF +KP + H AA +LRYLK P +G+F S+ S +++ D+
Sbjct: 1137 TNTHPDITHAVQHLSQFASKPTTYHQHAAFRILRYLKQAPGRGIFLSANSSLQLKSFSDS 1196
Query: 2138 DWATCLDTRKSLTGYCIFFGGSLVSWKTKKQLTVSKSSAEAEYRSMSQAVCELLWLSYIA 2317
DWA C+DTR+S+TG+ ++ G SL+SWK+KKQ TVS+SS+EAEYR+++ CE+ WL+Y+
Sbjct: 1197 DWAGCMDTRRSITGFAVYLGHSLISWKSKKQATVSRSSSEAEYRALASTSCEIQWLTYLL 1256
Query: 2318 TDLQVSFDLPIPLWCDNQAALYIVANPVFHERTKHVEIDCHVVRNQYKSGFVLPQKISTK 2497
D ++ F P L+CDNQ+ L I N VFHERTKH+EIDCH+VR + +G + +S+
Sbjct: 1257 EDFRLQFIRPALLYCDNQSVLQIACNQVFHERTKHIEIDCHLVREKVSNGLLKLLPVSSS 1316
Query: 2498 LQLADMFTKPLGPAVFSAMLSKLGMKDFLS 2587
QLAD++TK L P+ F+ + SKLGM D S
Sbjct: 1317 AQLADIYTKALSPSRFNELNSKLGMSDIYS 1346
Score = 190 bits (482), Expect = 5e-45
Identities = 129/497 (25%), Positives = 227/497 (45%), Gaps = 20/497 (4%)
Frame = +1
Query: 3298 WEDIVQRFGESNGPMIYQIQKDIATAAQGNLSVVAYFTKLKRLWDEYSCLVPKSICTCGN 3477
W + R+ +S+ I +Q + ++ QG+LS+ +FTKL+ +WDE P C+C
Sbjct: 39 WSRSISRYAQSDLLRISDLQHEASSIRQGDLSITEFFTKLRVIWDELENFRPDPTCSCTQ 98
Query: 3478 G------KVVADNEMNTRLMQFLMGLNDSYEHVRSQILIMEPLPSVNRAYSMILRIERQR 3639
+A + + MQFL GLN+ Y +V+S +L+M+P+P +++ +S +++ ERQ
Sbjct: 99 KCSCNVIPTIAQRKREDQAMQFLRGLNEQYSNVKSHVLLMDPIPPISKIFSYVVQQERQL 158
Query: 3640 TVQVAYPSAQEDVAMVAKIPSGGMRGRGYSPXXXXXXXXXXXXTREEKAQLMCDHCKIPG 3819
+ A++ S + C +C G
Sbjct: 159 LGSNFVANTITKTAIINAASS-----------------------------VTCTYCGKQG 189
Query: 3820 HEMNECFKLHGYPDWY--KTYKEQRNRSMANMVESMSTSNAKVVLEEKPKEIVGSDMSGI 3993
H N C++ HG+P + KT K S+ ST + ++ + + D
Sbjct: 190 HAENVCYRKHGFPSNHENKTNKGVYKASIGKTSIVNSTVTDECKTNDQQQATITQDYRFT 249
Query: 3994 IQK-EIAKYLAAQIPLGNTTAAEAGIDYAHFVSHAGT----------SLREYYALSSFDG 4140
Q+ ++ L Q ++ + ++ H VS T S+ + +S+
Sbjct: 250 PQQYQVLMDLIQQCTNDSSASPSPSTNHIHSVSSCSTQPSPPPGTVSSISTHTQIST--- 306
Query: 4141 VRDGSWILDTGASRHMCANELSMSHIQVLPSSVSVFLPDGSVKHVTHTGNVTISPSLILT 4320
SW++D+GA+ H+ ++ LS + ++V LP G TH G V + + LT
Sbjct: 307 ----SWVIDSGATDHV-SSSLSNFFTYNSINPITVKLPTGQHVLATHAGVVKFTDTFYLT 361
Query: 4321 DVLLVPSFKYNLLSVSQLIQTSNLKCVFYPTHCLLQDLQTDKVVGMGKAVGRIFIMSLQP 4500
DVL +P FKYNL+S+S+L+ + +++ +FY THCL+QD+ T + +G ++ M+
Sbjct: 362 DVLFIPEFKYNLISISKLVSSLDVQLIFYSTHCLIQDVNTKEKIGTVDVEVGLYTMTTAV 421
Query: 4501 IKTDHFSFAKPVSFPSTCNNVLDDWHIKLGHASSGVLAHL-DFLKSSFDDKQTLKNCEIC 4677
++ S + P +D WH +LGH L + + + +K C C
Sbjct: 422 VQP---SILSAIYNPEWSIQNIDLWHFRLGHLPYDKLHSMKQYYPCLYSNKHF--TCNTC 476
Query: 4678 HKAKQSRLPFPISDSHA 4728
H AKQ +L FP+S SHA
Sbjct: 477 HHAKQKKLSFPLSHSHA 493
>gb|KYP65734.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1013
Score = 779 bits (2011), Expect = 0.0
Identities = 404/880 (45%), Positives = 555/880 (63%), Gaps = 21/880 (2%)
Frame = +2
Query: 2 DSHASSIFDLIHVDVWGPYASHSFCRTPYFLTVVDDHSRATWIYLMSHKTLVPKMLSTFL 181
++ ++S+ +L+H D+WGPY+ S YFLT+VDD SR TWI +M K+ + L+ F+
Sbjct: 137 NTKSASVIELLHADIWGPYSIPSVFGHKYFLTLVDDFSRFTWIVMMKSKSETRQHLTNFI 196
Query: 182 HMVHTQFNKRVKEIRSDNGTEFVSGECQSLFHTHGVIHQKACTYTPQQNGIVERKHRHLF 361
+ TQF ++K +R+DNG+EF+ + LF + G+IHQ +C TPQQNG+VERKH+H+
Sbjct: 197 SYIETQFQTKLKCLRTDNGSEFLMHD---LFLSKGIIHQGSCVETPQQNGVVERKHQHIL 253
Query: 362 DIARALMFQSHLPSHFWVFSVLTAAYIINRLPSKLLHWKSPCEVLYGTKPDYSRMKPFGC 541
+ ARAL FQ+ LP +FW F++ A ++INR+PS LL K+P + L+ P ++ FGC
Sbjct: 254 NTARALYFQASLPKNFWNFAIQHAVHLINRIPSPLLDNKTPYQALHQRPPILVHLRSFGC 313
Query: 542 LSFASNLTPHKDKFAPRAHKCVFLGYESGTKGYRLYNLDTNKIQISRDVHFVETQFPYQX 721
L++AS L H+ KF PRA K V LGY+ G KGY LY+L +++ +SR+V F E FP+
Sbjct: 314 LAYASTLQAHRTKFQPRAKKSVLLGYKEGVKGYLLYDLHSHEFFMSRNVFFHEFTFPFHT 373
Query: 722 XXXXXXXXXXXPLFNIPITESSHPD-----PVSPT----LP--------SPQPVPSVPIL 850
I SS D P SPT +P SP P PS
Sbjct: 374 PSQTSLTQPSPTPITIQTPISSPYDLDNHVPPSPTSSTSIPPEQPHQPLSPAPAPS---- 429
Query: 851 RRSSRITKTPLWLNDFVTNAVTIGXXXXXXXXXXXXXXXXXYPVHTFPFHVSPLFHPTYI 1030
R S+R+ + P +L D+ + + T+ F P+Y
Sbjct: 430 RHSTRMRQPPSYLKDY--HCSLLAPTGRINSFSGISTPHSISSTLTYDF-----CSPSYK 482
Query: 1031 AFLANVSILQEPHSYAEACKSVEWREAMGKELEALEENHTWELTSLPPGKKAIGCRWVFK 1210
F +VS EPH+Y +A K W AM EL AL+ N TW + LP GK+ IGC+WV+K
Sbjct: 483 QFCLSVSTNFEPHTYTQASKYDCWIMAMKTELAALDMNQTWSIVDLPSGKRPIGCKWVYK 542
Query: 1211 VKMNSDGSVERYKARLVAKGYDQVYGDSYLDSFSPVAKQVTVRMLIALATKKHWMLDQLD 1390
+K SDGS+ERYKARLVAKGY Q G YLD++SPVAK TVR+L+AL K W L+QLD
Sbjct: 543 IKYLSDGSIERYKARLVAKGYSQTEGLDYLDTYSPVAKLTTVRVLLALTAIKGWFLEQLD 602
Query: 1391 INNAFLHGYLDEDIYMHPPEGYTAALPG----QVCHLKRSLYGLKQASRQWNVEFCDKLQ 1558
+NNAFLHG L E++YM P G + +VC L +S+YGLKQASRQW + L
Sbjct: 603 VNNAFLHGDLHEEVYMTLPPGLSVPSSSNTAPKVCKLHKSIYGLKQASRQWYSKLSSALI 662
Query: 1559 GFGFHQSEHDHCLFIKATDSVFMALIVYVDDVLVTASQPDAIAELKTYLHDMFTIKDLGH 1738
G+ S DH LFIK++ S F AL+VYVDD+++ + I +K LH F IKDLG+
Sbjct: 663 SMGYSPSTADHSLFIKSSSSHFTALLVYVDDIILAGNDKPEIDFIKAQLHKCFKIKDLGN 722
Query: 1739 AKYFLGLEIARSSAGTYIHQRKYILDILKDVGLLDCKPASTPFPQGLRLRGEEGVALLEP 1918
+YFLGLEIARS+ G ++QRKY L+IL+DVG L KP+STPF L+L + G +
Sbjct: 723 LRYFLGLEIARSNKGILLNQRKYTLEILEDVGFLAAKPSSTPFNPSLKLHSDHGSPYNDE 782
Query: 1919 DVYRRLIGRLLYLNMSRPDVTYCVQQLSQFINKPYSSHWDAAIHLLRYLKGCPSKGLFYS 2098
YRRLIGRLLYL +RPD++Y VQQLSQF++KP H+ AA +LRYLKG +GLFYS
Sbjct: 783 TAYRRLIGRLLYLTTTRPDISYVVQQLSQFVSKPLDIHYQAATRILRYLKGSHGRGLFYS 842
Query: 2099 SADSFHFEAYCDADWATCLDTRKSLTGYCIFFGGSLVSWKTKKQLTVSKSSAEAEYRSMS 2278
S+ S A+ D+DWA+C +RKS+TG+C+F G SL+SW++KKQ T+S+SS+EAEYR+++
Sbjct: 843 SSASLKLSAFADSDWASCSISRKSITGFCVFLGSSLISWRSKKQSTISRSSSEAEYRALA 902
Query: 2279 QAVCELLWLSYIATDLQVSFDLPIPLWCDNQAALYIVANPVFHERTKHVEIDCHVVRNQY 2458
CEL WL Y+ DL+ S + P ++CDN++A+Y+ NP FHERTKH+EIDCHV+R +
Sbjct: 903 SLTCELQWLHYLFNDLKTSLNFPTSVFCDNKSAIYLAHNPTFHERTKHIEIDCHVIREKI 962
Query: 2459 KSGFVLPQKISTKLQLADMFTKPLGPAVFSAMLSKLGMKD 2578
+S + + + QLAD FTKPL F++ +SKLG+ D
Sbjct: 963 QSRLLHLLPVPSSSQLADAFTKPLHATSFNSFVSKLGLYD 1002
Score = 70.5 bits (171), Expect = 2e-08
Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 4/147 (2%)
Frame = +1
Query: 4309 LILTDVLLVPSFKYNLLSVSQLIQTSNLKCVFYPTHCLLQDLQTDKVVGMGKAVGRIFIM 4488
LIL DVL VPSF NL+SVSQLI + + HCL+ T K++G K ++++
Sbjct: 1 LILHDVLFVPSFCVNLISVSQLINSHQCHLELHIDHCLILQNSTKKMIGTAKYQHGLYVI 60
Query: 4489 SLQPIKTDHFS--FAKPVSFPSTCNNVLDDWHIKLGHASSGV--LAHLDFLKSSFDDKQT 4656
+ F + ++VL WH +LGH S+ + F S+
Sbjct: 61 IRDSATRSQLTQPFVGNTISKDSSDSVL--WHHRLGHLSNSTHRIIASQFPIVSYQHHDV 118
Query: 4657 LKNCEICHKAKQSRLPFPISDSHASSI 4737
C+ICH AKQ RLP IS++ ++S+
Sbjct: 119 --PCDICHFAKQKRLPHFISNTKSASV 143
>emb|CAN82526.1| hypothetical protein VITISV_028058 [Vitis vinifera]
Length = 1125
Score = 778 bits (2009), Expect = 0.0
Identities = 417/859 (48%), Positives = 538/859 (62%), Gaps = 4/859 (0%)
Frame = +2
Query: 23 FDLIHVDVWGPYASHSFCRTPYFLTVVDDHSRATWIYLMSHKTLVPKMLSTFLHMVHTQF 202
F+LIH D+WGPY S YFLT+VDD+SR T ++ M HK+ +L F V TQF
Sbjct: 307 FELIHCDIWGPYKIASLSGAKYFLTIVDDYSRFTXVFFMHHKSETQHLLVNFFSFVQTQF 366
Query: 203 NKRVKEIRSDNGTEFVSGECQSLFHTHGVIHQKACTYTPQQNGIVERKHRHLFDIARALM 382
+ + IR DNG EF S + F G +Q +C YTPQQNG+VERKHRH+ + ARA
Sbjct: 367 HVSIANIRVDNGGEFFSX--REFFKQKGTTYQHSCVYTPQQNGVVERKHRHILESARAFX 424
Query: 383 FQSHLPSHFWVFSVLTAAYIINRLPSKLLHWKSPCEVLYGTKPDYSRMKPFGCLSFASNL 562
FQ+HLP FW V TA +IINRLP+ LL ++P E LYG P YS ++ FGCL++A+N+
Sbjct: 425 FQAHLPLPFWAECVSTAVHIINRLPTPLLSRQTPFERLYGKLPSYSHIRVFGCLAYATNV 484
Query: 563 -TPHKDKFAPRAHKCVFLGYESGTKGYRLYNLDTNKIQISRDVHFVETQFPYQXXXXXXX 739
PHK FAPRA +C+FLGY G K Y+LY+LDT+++ SRDV F ET FPY+
Sbjct: 485 HVPHK--FAPRAKRCIFLGYPVGQKAYKLYDLDTHQMFTSRDVVFHETIFPYE------- 535
Query: 740 XXXXXPLFNIPITESSHPDP--VSPTLPSPQPVPSVPILRRSSRITKTPLWLNDFVTNAV 913
+IP + SS+ DP +S L SP P P ILRRS R P+ L D+V N V
Sbjct: 536 --------SIP-SPSSNSDPFLLSHHLASPPPEP---ILRRSQRPHHPPMALRDYVCNQV 583
Query: 914 TIGXXXXXXXXXXXXXXXXXYPVHTF-PFHVSPLFHPTYIAFLANVSILQEPHSYAEACK 1090
T YP+ F +H + P + +F A VS EP SYAEA
Sbjct: 584 T--SPNHLPPLSSSPQKGTRYPLCNFVSYH---RYSPQHRSFTAAVSQDIEPTSYAEATS 638
Query: 1091 SVEWREAMGKELEALEENHTWELTSLPPGKKAIGCRWVFKVKMNSDGSVERYKARLVAKG 1270
W+EAM EL LE NHTW LTSLPPGKK IGCRWV+K+K +SDG++ER+KARLVAKG
Sbjct: 639 HSHWQEAMQSELATLEANHTWSLTSLPPGKKPIGCRWVYKIKXHSDGTIERFKARLVAKG 698
Query: 1271 YDQVYGDSYLDSFSPVAKQVTVRMLIALATKKHWMLDQLDINNAFLHGYLDEDIYMHPPE 1450
Y Q+ G Y D+FSP AK + VR L+ALA ++W L QLD +M PP
Sbjct: 699 YTQLEGIDYHDTFSPTAKMIXVRCLLALAAAQNWSLHQLDK-------------FMSPPP 745
Query: 1451 GYTAALPGQVCHLKRSLYGLKQASRQWNVEFCDKLQGFGFHQSEHDHCLFIKATDSVFMA 1630
VCHL +SLYGLKQASRQW +F +Q GF QS+ D+ LF F A
Sbjct: 746 SLRRQGENLVCHLHKSLYGLKQASRQWFAKFSTAIQAVGFIQSKADYSLFTCRKGKSFTA 805
Query: 1631 LIVYVDDVLVTASQPDAIAELKTYLHDMFTIKDLGHAKYFLGLEIARSSAGTYIHQRKYI 1810
L++YVDD+L+T + +AI LK +LH F IKDLG KYFLG+E++RS G I QRKY
Sbjct: 806 LLIYVDDILITGNDVNAIVALKQFLHSHFRIKDLGDLKYFLGIEVSRSKKGISISQRKYT 865
Query: 1811 LDILKDVGLLDCKPASTPFPQGLRLRGEEGVALLEPDVYRRLIGRLLYLNMSRPDVTYCV 1990
L+ILKD G L KP + P Q +L + G L P YRRL+GRL+YL ++RPD+TY V
Sbjct: 866 LEILKDGGFLGAKPVNFPMEQNTKL-SDSGELLKGPSQYRRLVGRLIYLTITRPDITYSV 924
Query: 1991 QQLSQFINKPYSSHWDAAIHLLRYLKGCPSKGLFYSSADSFHFEAYCDADWATCLDTRKS 2170
LS+F++ P H +AA+ +LRYLK P +GLF+ S + A+ D DWA C +R+S
Sbjct: 925 HVLSRFMHAPRRPHMEAALRVLRYLKNSPGQGLFFPSQNDLSLRAFSDXDWAGCPISRRS 984
Query: 2171 LTGYCIFFGGSLVSWKTKKQLTVSKSSAEAEYRSMSQAVCELLWLSYIATDLQVSFDLPI 2350
TGYC+F G SL+SW+TK+Q TVS SS EAEYR+M+ CEL WL + DL++ P
Sbjct: 985 XTGYCVFLGSSLISWRTKRQKTVSLSSXEAEYRAMAGTCCELSWLRSLLKDLRILHPKPA 1044
Query: 2351 PLWCDNQAALYIVANPVFHERTKHVEIDCHVVRNQYKSGFVLPQKISTKLQLADMFTKPL 2530
L+CDN AAL+I NPVFHERT+H+E+DCH +R++ + G V+ + I++ Q AD+FTKPL
Sbjct: 1045 LLYCDNTAALHIAVNPVFHERTRHIEMDCHFIRDKIQDGSVVTKHIASTDQXADVFTKPL 1104
Query: 2531 GPAVFSAMLSKLGMKDFLS 2587
G FS M+ KLG+ D S
Sbjct: 1105 GKETFSTMIHKLGVLDIHS 1123
Score = 89.0 bits (219), Expect = 4e-14
Identities = 58/195 (29%), Positives = 99/195 (50%), Gaps = 9/195 (4%)
Frame = +1
Query: 4159 ILDTGASRHMCANELSMSHIQVLPSSVSVFLPDGSVKHVTHTGNVTISPSLILTDVLLVP 4338
I+D+GA+ H+ ++ + + V +P G +T GN+ ++ + L +VL VP
Sbjct: 110 IIDSGATDHITSSPTLLVNSSKNTFLPPVAMPSGEQAPITSIGNLPLNSAATLKNVLGVP 169
Query: 4339 SFKYNLLSVSQLIQTSNLKCVFYPTHCLLQDLQTDKVVGMGKAVGRIFIMSLQPIKTDHF 4518
SFK +L+SVS++ + N F+P C+LQDL T +G+G+ R + L + ++
Sbjct: 170 SFKVDLMSVSRVTKDLNCSVTFFPHWCILQDLTTRTTIGLGEQ--RDGLYYLVALASEKP 227
Query: 4519 SFAKPVSFPSTCNNVLDD-------WHIKLGHASSGVLAHLDFLKSSFDDKQTLKN--CE 4671
P + ++C + WH +LGH SS + LDF+ + N C+
Sbjct: 228 KTQTPSAATTSCRSPSSQVTSSTALWHRRLGHLSS---SRLDFMAKHLLNFHFQSNNACD 284
Query: 4672 ICHKAKQSRLPFPIS 4716
+C AKQ +LPF +S
Sbjct: 285 VCALAKQRQLPFSVS 299
>gb|KYP34293.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1376
Score = 782 bits (2019), Expect = 0.0
Identities = 403/888 (45%), Positives = 557/888 (62%), Gaps = 27/888 (3%)
Frame = +2
Query: 5 SHASSIFDLIHVDVWGPYASHSFCRT-PYFLTVVDDHSRATWIYLMSHKTLVPKMLSTFL 181
S AS F L+H+D+WGPY+ S +F T+VDD++ TWI+LM +K+ +S F+
Sbjct: 495 STASRPFSLLHMDIWGPYSCISSIHGHKFFFTIVDDNTHFTWIFLMINKSETRMHISNFI 554
Query: 182 HMVHTQFNKRVKEIRSDNGTEFVSGECQSLFHTHGVIHQKACTYTPQQNGIVERKHRHLF 361
+++ QFN R++ I++DNG EF+ Q+ F++ G++HQ C TPQQNG+VERKH+HL
Sbjct: 555 NLIENQFNTRIQTIQTDNGAEFLM---QNFFNSKGIVHQTTCIETPQQNGVVERKHQHLL 611
Query: 362 DIARALMFQSHLPSHFWVFSVLTAAYIINRLPSKLLHWKSPCEVLYGTKPDYSRMKPFGC 541
++ AL+F S LP FW +++L A Y+INR+ + LL K+P + LYG D + ++ FGC
Sbjct: 612 NVTHALLFHSKLPYCFWSYALLHATYLINRITTPLLDNKTPFQKLYGQTCDITELRVFGC 671
Query: 542 LSFASNLTPHKDKFAPRAHKCVFLGYESGTKGYRLYNLDTNKIQISRDVHFVETQFPYQX 721
L + S T ++ K PRAH CVFLG+ TKGY Y+L T I ISR+V F E FP
Sbjct: 672 LCYVSTSTANRKKLDPRAHPCVFLGFSPTTKGYITYDLHTRAITISRNVSFYENHFPLLQ 731
Query: 722 XXXXXXXXXXXPLFNIPITESSH------PDPVSPTLPSPQPV----------------- 832
+ I SH PDP + SP P
Sbjct: 732 STSSTSNIPVVSPISFGIHSPSHDLISILPDPHQHNVTSPNPATTSHDSISLAPYSTTAD 791
Query: 833 ---PSVPILRRSSRITKTPLWLNDFVTNAVTIGXXXXXXXXXXXXXXXXXYPVHTFPFHV 1003
P+ LRRS+R+ P +L D+ + + YP+ +
Sbjct: 792 SLPPNSSPLRRSTRLRNPPSYLQDYHHSLTSTSTNLHPGML---------YPIEKY-ISY 841
Query: 1004 SPLFHPTYIAFLANVSILQEPHSYAEACKSVEWREAMGKELEALEENHTWELTSLPPGKK 1183
S L + + AF++++S + EPHSYAEA K W +AM ELEAL+ N TW LT LPP K+
Sbjct: 842 SRLSND-FQAFVSSISAVSEPHSYAEAAKHDCWLKAMHAELEALKMNQTWTLTPLPPHKQ 900
Query: 1184 AIGCRWVFKVKMNSDGSVERYKARLVAKGYDQVYGDSYLDSFSPVAKQVTVRMLIALATK 1363
A+GCRW++K+K N+DGS+ERYKARLVAKGY QV G YL +FSPVAK TVR+L+ALA
Sbjct: 901 AVGCRWIYKIKYNADGSIERYKARLVAKGYTQVEGLDYLATFSPVAKLTTVRLLLALAAV 960
Query: 1364 KHWMLDQLDINNAFLHGYLDEDIYMHPPEGYTAALPGQVCHLKRSLYGLKQASRQWNVEF 1543
W L QLD+NNAFLHG L+E++YM P G QVC L++SLYGLKQASRQW +
Sbjct: 961 FDWHLKQLDVNNAFLHGDLNEEVYMTLPLGMRPEYSNQVCKLQKSLYGLKQASRQWFAKL 1020
Query: 1544 CDKLQGFGFHQSEHDHCLFIKATDSVFMALIVYVDDVLVTASQPDAIAELKTYLHDMFTI 1723
L G+HQS DH LF+K + S AL++YVDD+++ + I + L F I
Sbjct: 1021 SSFLIHHGYHQSASDHSLFMKFSSSSTTALLIYVDDIVLAGNNLSEIQLITGLLDVAFKI 1080
Query: 1724 KDLGHAKYFLGLEIARSSAGTYIHQRKYILDILKDVGLLDCKPASTPFPQGLRLRGEEGV 1903
KDLG+ KYFLGLE+AR+ +G ++ QRKY+LDIL D G++ +P STP RL G
Sbjct: 1081 KDLGNLKYFLGLEVARNKSGIHLSQRKYVLDILSDCGMMASRPVSTPMDYTSRLSASSGT 1140
Query: 1904 ALLEPDVYRRLIGRLLYLNMSRPDVTYCVQQLSQFINKPYSSHWDAAIHLLRYLKGCPSK 2083
L +P YRRL+GRL+YL +RPD++Y V LSQF++ P ++H A +LRYLK P
Sbjct: 1141 PLADPSSYRRLLGRLIYLTTTRPDISYVVHHLSQFMSAPSTAHSQAIFRILRYLKQAPGS 1200
Query: 2084 GLFYSSADSFHFEAYCDADWATCLDTRKSLTGYCIFFGGSLVSWKTKKQLTVSKSSAEAE 2263
GLF+ + S H +A+ D+DWA CLDTR+S+TG+ ++ G SL+SW++KKQ TVS+SS+EAE
Sbjct: 1201 GLFFPTNSSLHLKAFSDSDWAGCLDTRRSITGFSVYLGDSLISWRSKKQPTVSRSSSEAE 1260
Query: 2264 YRSMSQAVCELLWLSYIATDLQVSFDLPIPLWCDNQAALYIVANPVFHERTKHVEIDCHV 2443
YR+++ EL WL+Y+ DL V P L+CDNQ+AL+I AN VFHERTKH++IDCH+
Sbjct: 1261 YRALATTTSELQWLTYLLHDLHVPVHQPALLYCDNQSALHIAANQVFHERTKHIDIDCHL 1320
Query: 2444 VRNQYKSGFVLPQKISTKLQLADMFTKPLGPAVFSAMLSKLGMKDFLS 2587
VR + +SG + +++ QLAD+FTK L P++F+A+ SKLGM + S
Sbjct: 1321 VREKLQSGLLKLLPVASPHQLADIFTKSLSPSMFTALYSKLGMLNLYS 1368
Score = 187 bits (476), Expect(2) = 7e-53
Identities = 152/525 (28%), Positives = 235/525 (44%), Gaps = 19/525 (3%)
Frame = +1
Query: 3214 LIAWLSVLNTISRDIVDAFLYADSARALWEDIVQRFGESNGPMIYQIQKDIATAAQGNLS 3393
+++WL + ++S I + L+ DSA +W D+ R+ + + I +Q + ++ QG+LS
Sbjct: 57 VVSWL--VPSVSFSIRQSILWMDSAEEIWRDLKSRYSQGDLLRISALQLEASSIKQGDLS 114
Query: 3394 VVAYFTKLKRLWDEYSCLVPKSICTC------GNGKVVADNEMNTRLMQFLMGLNDSYEH 3555
V YFT+L+ +WDE P IC C ++A ++ + MQFL GLND Y +
Sbjct: 115 VTDYFTQLRIIWDELENFRPDPICVCIVKCICKVSSILAQRKLEDQAMQFLRGLNDQYAN 174
Query: 3556 VRSQILIMEPLPSVNRAYSMILRIERQRTVQVAYPSAQEDVAMVAKIPSGGMRGRGYSPX 3735
VRS +L+M+PLP +N+ +S + + ERQ V + + A A + S
Sbjct: 175 VRSHVLLMDPLPPINKIFSYVAQQERQFAVSDSLAEVKNGFANAAIMNS----------- 223
Query: 3736 XXXXXXXXXXXTREEKAQLMCDHCKIPGHEMNECFKLHGYPDWYKTYKEQRNRSMANMVE 3915
C+ C GH + C++ HG+PD K K NR A
Sbjct: 224 -------------------TCNFCGRNGHTESTCYRKHGFPD--KNGKSSSNRGKAC--- 259
Query: 3916 SMSTSNAKVVLEEKPKEIVGSDMSGIIQKEIAKYLAAQIPLGNTTAAEAGIDYAHFVSH- 4092
S N V +T + G H S+
Sbjct: 260 SHCGKNGHTV--------------------------------DTCYKKHGFPPGHRFSNN 287
Query: 4093 ----AGTSLREYYALS-SFDGVRDGSWILDTGASRHM-CANELSMSHIQVLPSSVSVFLP 4254
A +S++ + + SFD WI+D+GA+ H+ C+ + S+ + P V V LP
Sbjct: 288 KSASANSSVQPHICTTHSFDTT---PWIIDSGATDHVTCSLQFFTSYKLIEP--VIVNLP 342
Query: 4255 DGSVKHVTHTGNVTISPSLILTDVLLVPSFKYNLLSVSQLIQTSNLKCVFYPTHCLLQDL 4434
G TH+G V S + LTDVL + SF +NL+SVS+L+ T++ + F C +QD+
Sbjct: 343 TGHKVTATHSGTVYFSSNFQLTDVLYISSFAFNLISVSKLVSTTSYQITFTNNVCFIQDI 402
Query: 4435 QTDKVVGMGKAVGRIFIMSLQPIKTDHFSFAKPVSFPST-----CNNV-LDDWHIKLGHA 4596
+T +G G L + HF KP ST C+ + +D WH +LGH
Sbjct: 403 RTKMKIGSVDVRG-----GLYQLIPHHF---KPPFIHSTIIHPKCDVIPIDLWHFRLGHL 454
Query: 4597 SSGVLAHLDFLKSSFDDKQTLKNCEICHKAKQSRLPFPISDSHAS 4731
S+ L ++ L + C ICH AKQ +L F S S AS
Sbjct: 455 SNTRLHNMQQLYPCLTINKDF-TCNICHYAKQRKLSFSSSHSTAS 498
Score = 51.6 bits (122), Expect(2) = 7e-53
Identities = 26/59 (44%), Positives = 35/59 (59%)
Frame = +3
Query: 3057 LILVSNILTGNNFLSWSRSMVIALSAKAKLGFINGKIEAPKEDSPKYENWRKVDCMVVS 3233
+ LVS L N+ SWSRSM+ ALSAK K+ F++G P Y W++ + MVVS
Sbjct: 1 MALVSPSLDSTNYHSWSRSMLTALSAKNKVEFVDGSAPQPPSSDRIYSAWKRCNNMVVS 59
>gb|KHN01991.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Glycine soja]
Length = 1311
Score = 773 bits (1997), Expect = 0.0
Identities = 411/892 (46%), Positives = 553/892 (61%), Gaps = 37/892 (4%)
Frame = +2
Query: 5 SHASSIFDLIHVDVWGPYASHSFCRTPYFLTVVDDHSRATWIYLMSHKTLVPKMLSTFLH 184
SHAS IF L+HVD+WGP + S YFLT+VDDHSR TW++LM K ++ F+
Sbjct: 451 SHASHIFYLLHVDIWGPCSKPSMHGHKYFLTIVDDHSRFTWVHLMHTKAETRDIIVNFIA 510
Query: 185 MVHTQFNKRVKEIRSDNGTEFVSGECQSLFHTHGVIHQKACTYTPQQNGIVERKHRHLFD 364
V TQ+NK++K+IRSDNG EF+ S + + G++HQ C TP+QNGI ERKH+HL +
Sbjct: 511 SVETQYNKKIKKIRSDNGYEFLM---PSFYASKGIMHQTTCVETPEQNGIAERKHQHLLN 567
Query: 365 IARALMFQSHLPSHFWVFSVLTAAYIINRLPSKLLHWKSPCEVLYGTKPDYSRMKPFGCL 544
+ RAL+FQ++LPS+FW +++L A Y++N +P+ LH SP E L+G P+ S ++ FGCL
Sbjct: 568 VTRALLFQANLPSNFWCYALLHATYLVNCIPTPFLHNVSPYEKLHGHLPEISHLRVFGCL 627
Query: 545 SFASNLTPHKDKFAPRAHKCVFLGYESGTKGYRLYNLDTNKIQISRDVHFVETQFPYQXX 724
+AS L ++ K PRAH C+F+G+++ TKGY +YNL + I SR+V F E F
Sbjct: 628 CYASTLKANRKKLDPRAHPCIFIGFKASTKGYLVYNLHLHSIITSRNVVFYEDHFS---- 683
Query: 725 XXXXXXXXXXPLFNIPITESSHPDP---------VSPTLP----SPQPV-----PSVPIL 850
IP T+SSHP+ +SP P PQPV P+
Sbjct: 684 -------------QIPETQSSHPESSTILPKSFNISPHDPIIEKPPQPVIQETTDHTPLQ 730
Query: 851 -----------------RRSSRITKTPLWLNDFVTNAVTIGXXXXXXXXXXXXXXXXXYP 979
RRS+R P +L D+ + + YP
Sbjct: 731 LTSTDESAFSQRTKHEPRRSTRPKHAPTYLQDYHHSLSS---------HDTKVSTSSRYP 781
Query: 980 VHTFPFHVSPLFHPTYIAFLANVSILQEPHSYAEACKSVEWREAMGKELEALEENHTWEL 1159
+ + S L H T+ F+ ++S EP SYAEA + W +AM EL+AL+ N+TW+L
Sbjct: 782 LSSV-LSYSRLSH-THKHFVMSISSTVEPSSYAEASQYDCWIKAMEAELQALQSNNTWKL 839
Query: 1160 TSLPPGKKAIGCRWVFKVKMNSDGSVERYKARLVAKGYDQVYGDSYLDSFSPVAKQVTVR 1339
T LPP K AIGCRWV+K+K +DGS+ERYKARLVAKGY Q+ G YL +FSPVAK VR
Sbjct: 840 TLLPPHKTAIGCRWVYKIKHRADGSIERYKARLVAKGYTQMEGLDYLYAFSPVAKLTIVR 899
Query: 1340 MLIALATKKHWMLDQLDINNAFLHGYLDEDIYMHPPEGYTAALPGQVCHLKRSLYGLKQA 1519
+L+A+ W L QLD+NNAFLHG LDE++YM P G + VC L+RSLY LKQA
Sbjct: 900 LLLAMVAFNQWHLRQLDVNNAFLHGELDEEVYMQVPPGLSVPNSQMVCRLQRSLYELKQA 959
Query: 1520 SRQWNVEFCDKLQGFGFHQSEHDHCLFIKATDSVFMALIVYVDDVLVTASQPDAIAELKT 1699
SRQW + L GF +S DH LF++ T S+ AL+VYVDD+++T + I ++
Sbjct: 960 SRQWFTKLSGLLISLGFEKSHSDHSLFLRFTGSIITALLVYVDDIILTGNSESEIQDVIK 1019
Query: 1700 YLHDMFTIKDLGHAKYFLGLEIARSSAGTYIHQRKYILDILKDVGLLDCKPASTPFPQGL 1879
L F IKDLG+ KYFLG+EIARSS+G ++ QRKY LDIL D G+L C+P TP
Sbjct: 1020 LLDQAFKIKDLGNLKYFLGMEIARSSSGIHLCQRKYTLDILSDSGMLGCQPNVTPMDYST 1079
Query: 1880 RLRGEEGVALL--EPDVYRRLIGRLLYLNMSRPDVTYCVQQLSQFINKPYSSHWDAAIHL 2053
+L+ G L YRRLIGRL+YL +RPD+TY VQQLSQ+++ P S H AA +
Sbjct: 1080 KLQATAGTPLSTEASSSYRRLIGRLIYLTNTRPDITYAVQQLSQYMSNPTSVHQQAAYRI 1139
Query: 2054 LRYLKGCPSKGLFYSSADSFHFEAYCDADWATCLDTRKSLTGYCIFFGGSLVSWKTKKQL 2233
LRYLKG G+F S+ + A+ D+DWA C D+RKS TG+ I+ G S VSW++KKQ
Sbjct: 1140 LRYLKGTSGSGIFLSATGTPQLRAFSDSDWAGCQDSRKSTTGFVIYLGSSPVSWQSKKQS 1199
Query: 2234 TVSKSSAEAEYRSMSQAVCELLWLSYIATDLQVSFDLPIPLWCDNQAALYIVANPVFHER 2413
TVS+SS+EAEYR+M+ CEL WL+Y+ D + +F P ++CDNQ+A+ I NPVFHER
Sbjct: 1200 TVSRSSSEAEYRAMATTTCELQWLTYLLQDFRHNFTKPATIYCDNQSAIQIATNPVFHER 1259
Query: 2414 TKHVEIDCHVVRNQYKSGFVLPQKISTKLQLADMFTKPLGPAVFSAMLSKLG 2569
TKH+EIDCH+VR + SG + + + LQLAD+FTK L P VF + +KLG
Sbjct: 1260 TKHIEIDCHIVRQKVTSGLLKLLPVPSSLQLADIFTKALPPTVFQNLCNKLG 1311
Score = 117 bits (292), Expect = 1e-22
Identities = 77/314 (24%), Positives = 140/314 (44%), Gaps = 8/314 (2%)
Frame = +1
Query: 3151 SLMEKLKHRRKIHLNTKIGEKLIAWLSVLNTISRDIVDAFLYADSARALWEDIVQRFGES 3330
S E LK R + +++W ++++++ I + L+ D A +W D+ R+ +
Sbjct: 29 SAPEPLKTDRTYGAWRRCNNMVLSW--IVHSVAASIRQSILWMDKAEDIWRDLKTRYSQG 86
Query: 3331 NGPMIYQIQKDIATAAQGNLSVVAYFTKLKRLWDEYSCLVPKSICT------CGNGKVVA 3492
+ I +Q++ +T QG LSV YFT+L+ +WDE P CT C ++A
Sbjct: 87 DLLRISDLQQEASTLRQGTLSVTEYFTRLRVIWDEIENFRPDPACTCNVRCSCSAFAIIA 146
Query: 3493 DNEMNTRLMQFLMGLNDSYEHVRSQILIMEPLPSVNRAYSMILRIERQRTVQVAYPSAQE 3672
++ R MQFL GLND Y ++RS +L+M+P+P++ + +S + + ERQ
Sbjct: 147 QRKLEDRAMQFLRGLNDQYTNIRSHVLLMDPIPAITKIFSYVAQQERQ------------ 194
Query: 3673 DVAMVAKIPSGGMRGRGYSPXXXXXXXXXXXXTREEKAQLMCDHCKIPGHEMNECFKLHG 3852
+ + P A+ +C++C GH N C+K HG
Sbjct: 195 -------LLGNSSPNLNFEPKDVSI----------NAAKTICNYCGRIGHTENICYKKHG 237
Query: 3853 YPDWYKT-YKEQRNRSMANMVESMSTSNAKVVLEEKPKEIVGSDMSGIIQKEIAKYLAAQ 4029
P ++T K R + + + +L+ + + V +S + E + +
Sbjct: 238 MPLNHETRNKGTSGRKSCTHCGTFQSFTSPWILDSRATDHVTCSLSNLHSYECINPVPVK 297
Query: 4030 IPLGNTT-AAEAGI 4068
+P G+ A +GI
Sbjct: 298 LPNGHQVHATHSGI 311
Score = 103 bits (256), Expect = 2e-18
Identities = 82/279 (29%), Positives = 127/279 (45%), Gaps = 4/279 (1%)
Frame = +1
Query: 3913 ESMSTSNAKVVLEEKPKEIVGSDMSGIIQKEIAKYLAAQIPLGNTTAAEAGIDYAHFVSH 4092
E N+ L +PK D+S K I Y N + G+ H +
Sbjct: 192 ERQLLGNSSPNLNFEPK-----DVSINAAKTICNYCGRIGHTENICYKKHGMPLNHETRN 246
Query: 4093 AGTSLREYYALSSFDGVRDGSWILDTGASRHMCANELSMSHIQVLPSSVSVFLPDGSVKH 4272
GTS R+ WILD+ A+ H+ + LS H + V V LP+G H
Sbjct: 247 KGTSGRKSCTHCGTFQSFTSPWILDSRATDHVTCS-LSNLHSYECINPVPVKLPNGHQVH 305
Query: 4273 VTHTGNVTISPSLILTDVLLVPSFKYNLLSVSQLIQTSNLKCVFYPTHCLLQDLQTDKVV 4452
TH+G V +S S+ L +VL +P+F +NL+S+S+L+ +++ +F T C+LQD T +
Sbjct: 306 ATHSGIVHLSKSITLFNVLYMPAFTFNLISISKLVSSTHCALIFSSTSCMLQDASTRTKI 365
Query: 4453 GMGKAVGRIFIMSLQPIKTDHFSFAKPVSFPSTCNNVLDDWHIKLGHASSGVL----AHL 4620
G+ + ++ + + + P +D WH ++GH S+ L H
Sbjct: 366 GIVEEKHGLYHLIPDQVNK---VICSTIIHPKCKIIPIDLWHFRMGHLSTERLQCMKPHY 422
Query: 4621 DFLKSSFDDKQTLKNCEICHKAKQSRLPFPISDSHASSI 4737
L+ +DK + C CH AK +LPF S SHAS I
Sbjct: 423 PILR---NDKTFV--CNTCHYAKHKKLPFSSSTSHASHI 456
>gb|KYP39497.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1445
Score = 774 bits (1998), Expect = 0.0
Identities = 395/868 (45%), Positives = 549/868 (63%), Gaps = 16/868 (1%)
Frame = +2
Query: 23 FDLIHVDVWGPYASHSFCRTPYFLTVVDDHSRATWIYLMSHKTLVPKMLSTFLHMVHTQF 202
F+LIHVD+WGP A S YFLTVVDD+SR TWI+L+ K V +L F+ ++ Q
Sbjct: 592 FELIHVDIWGPLAISSIEGYKYFLTVVDDYSRFTWIHLLKSKQEVKSLLPNFIILIENQH 651
Query: 203 NKRVKEIRSDNGTEFVSGECQSLFHTHGVIHQKACTYTPQQNGIVERKHRHLFDIARALM 382
+ ++K +RSDNG EF+ + ++ G++H+ +C TPQQNGIVERKH+HL ++ RAL+
Sbjct: 652 DCKLKRLRSDNGKEFI---LTNFYNAKGILHETSCVETPQQNGIVERKHQHLLNVCRALL 708
Query: 383 FQSHLPSHFWVFSVLTAAYIINRLPSKLLHWKSPCEVLYGTKPDYSRMKPFGCLSFASNL 562
FQS +P FW +++ A +IINRLP++ L KSP E++Y KPD ++ FGCL++AS L
Sbjct: 709 FQSQIPKTFWSYAIKHAVHIINRLPTRFLKQKSPFEMIYHHKPDLHDLRVFGCLAYASTL 768
Query: 563 TPHKDKFAPRAHKCVFLGYESGTKGYRLYNLDTNKIQISRDVHFVETQFPYQXXXXXXXX 742
+ K APRA KC+FLGY+SGTKGY LYNL + +SR+V F ET FPY
Sbjct: 769 AAGRTKLAPRASKCIFLGYKSGTKGYVLYNLHSRFFSLSRNVIFHETVFPYSDFHKFSSN 828
Query: 743 XXXX-----------PLFNIPITESSHPDPVSPTLPSP-----QPVPSVPILRRSSRITK 874
L+ I + E+++ S L P Q +P P R S+R
Sbjct: 829 SDAILTESTNDFAHYELYPITVLETTNTHTPSEQLQQPLTEEMQDIPVQP--RVSTRQKF 886
Query: 875 TPLWLNDFVTNAVTIGXXXXXXXXXXXXXXXXXYPVHTFPFHVSPLFHPTYIAFLANVSI 1054
P +LN + + T YP+H++ + Y AF ++S
Sbjct: 887 RPNYLNQYHCYSATSSNSACL------------YPLHSYLSYNK--CSSNYTAFCLSISA 932
Query: 1055 LQEPHSYAEACKSVEWREAMGKELEALEENHTWELTSLPPGKKAIGCRWVFKVKMNSDGS 1234
EP +YA+A W++AM EL+AL N TW L SLPPG+K IGC+WV+++K +DGS
Sbjct: 933 HVEPSNYAQAITQDCWKQAMMTELDALNRNRTWSLVSLPPGRKLIGCKWVYRIKYKADGS 992
Query: 1235 VERYKARLVAKGYDQVYGDSYLDSFSPVAKQVTVRMLIALATKKHWMLDQLDINNAFLHG 1414
V+R+KARLVAKG+ Q G Y ++FSPVAK TVR L+ALA+ +W L QLD++NAFLHG
Sbjct: 993 VDRHKARLVAKGFTQTEGIDYFETFSPVAKLTTVRFLLALASTNNWFLHQLDVDNAFLHG 1052
Query: 1415 YLDEDIYMHPPEGYTAALPGQVCHLKRSLYGLKQASRQWNVEFCDKLQGFGFHQSEHDHC 1594
L+E++YM PP+G VC L++SLYGLKQASR WN + +L G+ QS DH
Sbjct: 1053 DLEEEVYMRPPQGLQLPDSKLVCKLEKSLYGLKQASRNWNQKLNSELLHLGYKQSSADHS 1112
Query: 1595 LFIKATDSVFMALIVYVDDVLVTASQPDAIAELKTYLHDMFTIKDLGHAKYFLGLEIARS 1774
LFIK S L+VYVDDV+++ + I +K +LH F IKDLG K+FLGLE+ARS
Sbjct: 1113 LFIKKQGSSITILLVYVDDVVLSGNNFSEIQIVKQHLHQKFQIKDLGPLKFFLGLEVARS 1172
Query: 1775 SAGTYIHQRKYILDILKDVGLLDCKPASTPFPQGLRLRGEEGVALLEPDVYRRLIGRLLY 1954
G ++QRKY L+++ + GLL KPA TP ++L + G L +P +RRLIGRLLY
Sbjct: 1173 KKGIILNQRKYCLELIDESGLLGSKPAPTPADPAIKLHADHGSLLNDPTSFRRLIGRLLY 1232
Query: 1955 LNMSRPDVTYCVQQLSQFINKPYSSHWDAAIHLLRYLKGCPSKGLFYSSADSFHFEAYCD 2134
L +RPD+++ VQQLSQF+++P H AA+ ++RYLKG P GLFY + + +A+ D
Sbjct: 1233 LTNTRPDISFSVQQLSQFVSQPREPHLQAALRIVRYLKGAPGLGLFYPAENHLRIQAFSD 1292
Query: 2135 ADWATCLDTRKSLTGYCIFFGGSLVSWKTKKQLTVSKSSAEAEYRSMSQAVCELLWLSYI 2314
+DWATC TRKS+TGYC+F G SLVSWK+KKQ TVS+SS+EAEYR+++ CEL WL ++
Sbjct: 1293 SDWATCSTTRKSVTGYCVFLGKSLVSWKSKKQSTVSRSSSEAEYRALASLTCELQWLKFL 1352
Query: 2315 ATDLQVSFDLPIPLWCDNQAALYIVANPVFHERTKHVEIDCHVVRNQYKSGFVLPQKIST 2494
+ L V P ++ D+Q+A+ I NP FHERTKH+E+DCH++R + + + + +
Sbjct: 1353 SDSLFVKIPAPFSVFSDSQSAIQIAKNPTFHERTKHIEVDCHLIRIKLQEELLHLIHVPS 1412
Query: 2495 KLQLADMFTKPLGPAVFSAMLSKLGMKD 2578
QLAD FTK L P +F +SKLG+ +
Sbjct: 1413 ANQLADAFTKSLYPKLFLHAISKLGLSN 1440
Score = 179 bits (454), Expect = 1e-41
Identities = 141/541 (26%), Positives = 245/541 (45%), Gaps = 33/541 (6%)
Frame = +1
Query: 3199 KIGEKLIAWLSVLNTISRDIVDAFLYADSARALWEDIVQRFGESNGPMIYQIQKDIATAA 3378
+ + +++WL+ ++++ I + ++ +SA +W D+ RF + I +Q+++
Sbjct: 81 RCNKMVMSWLA--HSMTPSIRQSVMWIESASEIWRDLCDRFSHGDKFRIADLQEELQNCK 138
Query: 3379 QGNLSVVAYFTKLKRLWDEYS-------CLVPKSICTCGNGKVVADNEMNTRLMQFLMGL 3537
QG L+V Y+T+L+ LW E S C P + C+CG + + +++FL GL
Sbjct: 139 QGELTVSQYYTRLRILWKELSIYRTVLACSCPVA-CSCGIFSKIQKERDDDCVIKFLRGL 197
Query: 3538 NDSYEHVRSQILIMEPLPSVNRAYSMILRIERQRTVQVAYPSAQEDVAMV---------- 3687
ND + VRSQ+++MEP+P + R +S++L+ ER+ V P QE A+
Sbjct: 198 NDEFSQVRSQVMLMEPMPGLTRTFSLVLQQEREFGGPVP-PIPQESAALATFNDDSARNN 256
Query: 3688 -------AKIPSGGMRGRGYSPXXXXXXXXXXXXTREEKAQLMCDHCKIPGHEMNECFKL 3846
+ GG GRG ++ C CK H ++ CF++
Sbjct: 257 SSTRGGFSNTRGGGRSGRG---------------NNTGRSTRFCTKCKKTNHTIDTCFQI 301
Query: 3847 HGYPDWYKTYKEQRNRSMANMVESMST--SNAKVVLEEKPKEIVGSDMSGIIQKEIAKYL 4020
+G+P Y+T + + + S++ S +V K+ V S + K+ +Y
Sbjct: 302 YGFPPGYRTNGKSTSTTSNTSKSSVNNFDSTTSLVSATSAKDDVTSQNTFNFSKD--QYQ 359
Query: 4021 AAQIPLGNTTAAEAGIDYAHFVSHAGTSLREYYALSSFDGVRDGSWILDTGASRHMCANE 4200
A L + ++ AH S + + + SWILD+GA+ H+C ++
Sbjct: 360 ALLGLLQQSQDPSPSVNSAHKCSVSTPGINLF----------QSSWILDSGATDHICPSK 409
Query: 4201 LSMSHIQVLPSSVSVFLPDGSVKHVTHTGNVTISPSLILTDVLLVPSFKYNLLSVSQLIQ 4380
S + + VSV LP+ ++G + + +L L + L VP F +L+S+ +L+
Sbjct: 410 SYFSSL-IPIKPVSVKLPNNQSVFACYSGTIHLG-NLTLYNALYVPDFSVHLISIPKLVT 467
Query: 4381 TSNLKCVFYPTHCLLQDLQTDKVVGMGKAVGRIFIMSLQPIKTDHFS-------FAKPVS 4539
T N +F C++ T K++G K +F + LQ + FS +
Sbjct: 468 TLNCIVIFCEYDCIIVQRHTFKMIGAAKQQSGLFQL-LQHNDSLGFSTTGNNCTTVLATT 526
Query: 4540 FPSTCNNVLDDWHIKLGHASSGVLAHLDFLKSSFDDKQTLKNCEICHKAKQSRLPFPISD 4719
+N WH KLGH S+ VL L +S + C+IC AKQ +LPFP S
Sbjct: 527 LNDNFSNSTSVWHAKLGHPSNKVLQTLSSQYTSI-KFPLVHVCDICSFAKQKKLPFPDST 585
Query: 4720 S 4722
S
Sbjct: 586 S 586
>emb|CAN73272.1| hypothetical protein VITISV_013115 [Vitis vinifera]
Length = 1178
Score = 759 bits (1959), Expect = 0.0
Identities = 401/873 (45%), Positives = 545/873 (62%), Gaps = 16/873 (1%)
Frame = +2
Query: 2 DSHASSIFDLIHVDVWGPYASHSFCRTPYFLTVVDDHSRATWIYLMSHKTLVPKMLSTFL 181
D+ A+ IF+ IH D+WG Y S C YFLT+VDD SRA WIYL+ KT V +M +F+
Sbjct: 315 DNKATRIFEKIHCDLWGSYKHVSSCGARYFLTIVDDFSRAVWIYLLVDKTEVFRMFMSFI 374
Query: 182 HMVHTQFNKRVKEIRSDNGTEFVSGECQ-SLFHTHGVIHQKACTYTPQQNGIVERKHRHL 358
MV QF++ VK ++SDNGTEF +C F G++ Q +C TPQQNG VERKH+H+
Sbjct: 375 AMVDRQFSQTVKVVQSDNGTEF---KCLLDYFSATGILFQTSCVGTPQQNGRVERKHKHI 431
Query: 359 FDIARALMFQSHLPSHFWVFSVLTAAYIINRLPSKLLHWKSPCEVLYGTKPDYSRMKPFG 538
++ RAL FQ++LP +FW SVL AA++INR PS LLH K+P E+L+GT P Y+ + FG
Sbjct: 432 LNVGRALRFQANLPIYFWGESVLAAAHLINRTPSPLLHNKTPFEILFGTPPSYAAIHTFG 491
Query: 539 CLSFASNLTPHKDKFAPRAHKCVFLGYESGTKGYRLYNLDTNKIQISRDVHFVETQFPYQ 718
CLSFA + DKFA R+ KCVFLGY G KG++L++LDT ++ +SRDV F E FP+
Sbjct: 492 CLSFAHDXKSKGDKFASRSRKCVFLGYPFGKKGWKLFDLDTKELFVSRDVKFFEDVFPFG 551
Query: 719 XXXXXXXXXXXXPLFNIPITESSHPDPVSPTLPSPQPVPSVPI----LRRSSRITKTPLW 886
NI T SS +P P P+ VP+V + L SS P+
Sbjct: 552 NPGAVNIIPE-----NIVPTASS-----APLSPGPEVVPTVGLDSLGLDNSSNGQSAPMG 601
Query: 887 -----------LNDFVTNAVTIGXXXXXXXXXXXXXXXXXYPVHTFPFHVSPLFHPTYIA 1033
L DFVT+ V + YP+ + + H Y
Sbjct: 602 KGMRDKFPSVLLRDFVTHTV-VAESPSPATPXPQHPSGTPYPIAHYINCDNFSVH--YRK 658
Query: 1034 FLANVSILQEPHSYAEACKSVEWREAMGKELEALEENHTWELTSLPPGKKAIGCRWVFKV 1213
FLA + +P S+ EA K V W+++M +E+ ALEEN TW L LP GK+A+G +WV++
Sbjct: 659 FLATIISSNDPKSFKEAMKDVGWQKSMHEEIRALEENGTWTLEPLPKGKRALGSQWVYRT 718
Query: 1214 KMNSDGSVERYKARLVAKGYDQVYGDSYLDSFSPVAKQVTVRMLIALATKKHWMLDQLDI 1393
K S+G +ER K+RLV G Q G Y ++FSPVAK TVR +A+A K+W L Q+D+
Sbjct: 719 KYFSNGDIERLKSRLVVLGNHQEAGIDYHETFSPVAKMTTVRAFLAIAASKNWELHQMDV 778
Query: 1394 NNAFLHGYLDEDIYMHPPEGYTAALPGQVCHLKRSLYGLKQASRQWNVEFCDKLQGFGFH 1573
+NAFLHG L+E++YM P G+ + P VC L++SLYGLKQA R W + L+G+GF
Sbjct: 779 HNAFLHGDLEEEVYMKLPPGFERSDPNLVCRLRKSLYGLKQAPRCWFSKLVTALKGYGFL 838
Query: 1574 QSEHDHCLFIKATDSVFMALIVYVDDVLVTASQPDAIAELKTYLHDMFTIKDLGHAKYFL 1753
QS D+ LF T +V + ++VYVDD++++ + A+ K YL D F +KDLG KYFL
Sbjct: 839 QSYSDYSLFTYTTGNVQINVLVYVDDLIISGNDSAALKTFKAYLSDCFKMKDLGVLKYFL 898
Query: 1754 GLEIARSSAGTYIHQRKYILDILKDVGLLDCKPASTPFPQGLRLRGEEGVALLEPDVYRR 1933
G+E+ARSSAG ++ QRKY LDI+ + GLL KP P Q RL G L P+ YRR
Sbjct: 899 GIEVARSSAGLFLCQRKYTLDIVSEAGLLGAKPCGFPIEQNHRLXLANGELLSNPESYRR 958
Query: 1934 LIGRLLYLNMSRPDVTYCVQQLSQFINKPYSSHWDAAIHLLRYLKGCPSKGLFYSSADSF 2113
L+GRL+YL ++RPD+ Y V LSQF+ +P HW+AA+ ++RYLKG P +G+ +
Sbjct: 959 LVGRLIYLAVTRPDLAYSVHILSQFMXEPRIEHWEAALRVVRYLKGTPGQGILLRADSDL 1018
Query: 2114 HFEAYCDADWATCLDTRKSLTGYCIFFGGSLVSWKTKKQLTVSKSSAEAEYRSMSQAVCE 2293
+ +CD+DWA C TR+SL+G+ +F G S +SWKTKKQ TVS+SSAEAEYR+M+ CE
Sbjct: 1019 SLQGWCDSDWAACPVTRRSLSGWLVFLGQSPISWKTKKQHTVSRSSAEAEYRAMAAVTCE 1078
Query: 2294 LLWLSYIATDLQVSFDLPIPLWCDNQAALYIVANPVFHERTKHVEIDCHVVRNQYKSGFV 2473
L WL + L V I L+CD+Q+AL++ NPVFHERTKH+E+DCH VR+ G +
Sbjct: 1079 LKWLKGLLLSLGVHHPKAIKLFCDSQSALHMAKNPVFHERTKHIEVDCHFVRDAITDGLI 1138
Query: 2474 LPQKISTKLQLADMFTKPLGPAVFSAMLSKLGM 2572
P + T QLAD+FTK LG F +L+KLG+
Sbjct: 1139 APSYVPTVTQLADIFTKALGKKQFDYLLAKLGI 1171
Score = 90.1 bits (222), Expect = 2e-14
Identities = 70/201 (34%), Positives = 100/201 (49%), Gaps = 6/201 (2%)
Frame = +1
Query: 4153 SWILDTGASRHMCANELSMSHIQVLPSSVSVFLPDGSVKHVTHTGNVTISPSLILTDVLL 4332
SWI+DTGA+ H+ +LS + V LP+G T +G+V +S ++ L +VL
Sbjct: 137 SWIIDTGATHHV-TGDLSWLFDTIALFECPVGLPNGESVVATQSGSVRLSNNITLQNVLY 195
Query: 4333 VPSFKYNLLSVSQLIQTSNLKCV--FYPTHCLLQDLQTDKVVGMG-KAVGRIFIMSLQPI 4503
VP NLLSVSQL T +L C+ F C +QD T +++G G + G + +
Sbjct: 196 VPKLNCNLLSVSQL--TDDLHCIVQFNSYMCAIQD-HTRELIGTGVRRDGLYYFGGAEGD 252
Query: 4504 KTDHFSFAKPVSFPSTCNNVLDDWHIKLGHASSGV---LAHLDFLKSSFDDKQTLKNCEI 4674
H S S L+ WH ++GH S V L + LK S + K CEI
Sbjct: 253 SVQHVSVHNAAS-------TLELWHKRMGHPSEKVVKLLPPVSNLKGSLN-----KACEI 300
Query: 4675 CHKAKQSRLPFPISDSHASSI 4737
C +AK R FP+SD+ A+ I
Sbjct: 301 CFRAKHXRDKFPLSDNKATRI 321
>gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hopscotch polyprotein
(gb|U12626) [Arabidopsis thaliana]
Length = 1315
Score = 759 bits (1960), Expect = 0.0
Identities = 393/873 (45%), Positives = 543/873 (62%), Gaps = 16/873 (1%)
Frame = +2
Query: 2 DSHASSIFDLIHVDVWGPYASHSFCRTPYFLTVVDDHSRATWIYLMSHKTLVPKMLSTFL 181
++ +S FDLIH+D WGP++ + YFLT+VDD+SRATW+YL+ +K+ V ++ TF+
Sbjct: 456 NNKSSRPFDLIHIDTWGPFSVQTHDGYRYFLTIVDDYSRATWVYLLRNKSDVLTVIPTFV 515
Query: 182 HMVHTQFNKRVKEIRSDNGTEFVSGECQSLFHTHGVIHQKACTYTPQQNGIVERKHRHLF 361
MV QF +K +RSDN E +H+ G++ +C TPQQN +VERKH+H+
Sbjct: 516 TMVENQFETTIKGVRSDNAPEL---NFTQFYHSKGIVPYHSCPETPQQNSVVERKHQHIL 572
Query: 362 DIARALMFQSHLPSHFWVFSVLTAAYIINRLPSKLLHWKSPCEVLYGTKPDYSRMKPFGC 541
++AR+L FQSH+P +W +LTA Y+INRLP+ +L K P EVL T P Y +K FGC
Sbjct: 573 NVARSLFFQSHIPISYWGDCILTAVYLINRLPAPILEDKCPFEVLTKTVPTYDHIKVFGC 632
Query: 542 LSFASNLTPHKDKFAPRAHKCVFLGYESGTKGYRLYNLDTNKIQISRDVHFVETQFPYQX 721
L +AS + KF+PRA C F+GY SG KGY+L +L+T+ I +SR V F E FP+
Sbjct: 633 LCYASTSPKDRHKFSPRAKACAFIGYPSGFKGYKLLDLETHSIIVSRHVVFHEELFPFLG 692
Query: 722 XXXXXXXXXXXPLFN-IPITESSHPDPVSPT--------LPSPQPVPSVP--ILRRSSRI 868
P N P + D V+P+ LPS P +VP ++ S R
Sbjct: 693 SDLSQEEQNFFPDLNPTPPMQRQSSDHVNPSDSSSSVEILPSANPTNNVPEPSVQTSHRK 752
Query: 869 TKTPLWLNDFVTNAVTIGXXXXXXXXXXXXXXXXXYPVHTFPFHVSPLFHPTYIAFLANV 1048
K P +L D+ ++V P F + Y+ FLA +
Sbjct: 753 AKKPAYLQDYYCHSVVSST-----------------PHEIRKFLSYDRINDPYLTFLACL 795
Query: 1049 SILQEPHSYAEACKSVEWREAMGKELEALEENHTWELTSLPPGKKAIGCRWVFKVKMNSD 1228
+EP +Y EA K WR+AMG E + LE HTWE+ SLP K+ IGCRW+FK+K NSD
Sbjct: 796 DKTKEPSNYTEAEKLQVWRDAMGAEFDFLEGTHTWEVCSLPADKRCIGCRWIFKIKYNSD 855
Query: 1229 GSVERYKARLVAKGYDQVYGDSYLDSFSPVAKQVTVRMLIALATKKHWMLDQLDINNAFL 1408
GSVERYKARLVA+GY Q G Y ++FSPVAK +V++L+ +A + L QLDI+NAFL
Sbjct: 856 GSVERYKARLVAQGYTQKEGIDYNETFSPVAKLNSVKLLLGVAARFKLSLTQLDISNAFL 915
Query: 1409 HGYLDEDIYMHPPEGYTAAL-----PGQVCHLKRSLYGLKQASRQWNVEFCDKLQGFGFH 1573
+G LDE+IYM P+GY + P VC LK+SLYGLKQASRQW ++F L G GF
Sbjct: 916 NGDLDEEIYMRLPQGYASRQGDSLPPNAVCRLKKSLYGLKQASRQWYLKFSSTLLGLGFI 975
Query: 1574 QSEHDHCLFIKATDSVFMALIVYVDDVLVTASQPDAIAELKTYLHDMFTIKDLGHAKYFL 1753
QS DH F+K +D +F+ ++VY+DD+++ ++ A+ LK+ + F ++DLG KYFL
Sbjct: 976 QSYCDHTCFLKISDGIFLCVLVYIDDIIIASNNDAAVDILKSQMKSFFKLRDLGELKYFL 1035
Query: 1754 GLEIARSSAGTYIHQRKYILDILKDVGLLDCKPASTPFPQGLRLRGEEGVALLEPDVYRR 1933
GLEI RS G +I QRKY LD+L + G L CKP+S P + + G +E YRR
Sbjct: 1036 GLEIVRSDKGIHISQRKYALDLLDETGQLGCKPSSIPMDPSMVFAHDSGGDFVEVGPYRR 1095
Query: 1934 LIGRLLYLNMSRPDVTYCVQQLSQFINKPYSSHWDAAIHLLRYLKGCPSKGLFYSSADSF 2113
LIGRL+YLN++RPD+T+ V +L+QF P +H A +L+Y+KG +GLFYS+
Sbjct: 1096 LIGRLMYLNITRPDITFAVNKLAQFSMAPRKAHLQAVYKILQYIKGTIGQGLFYSATSEL 1155
Query: 2114 HFEAYCDADWATCLDTRKSLTGYCIFFGGSLVSWKTKKQLTVSKSSAEAEYRSMSQAVCE 2293
+ Y +AD+ +C D+R+S +GYC+F G SL+ WK++KQ VSKSSAEAEYRS+S A E
Sbjct: 1156 QLKVYANADYNSCRDSRRSTSGYCMFLGDSLICWKSRKQDVVSKSSAEAEYRSLSVATDE 1215
Query: 2294 LLWLSYIATDLQVSFDLPIPLWCDNQAALYIVANPVFHERTKHVEIDCHVVRNQYKSGFV 2473
L+WL+ +LQV P L+CDN+AA++I N VFHERTKH+E DCH VR + G
Sbjct: 1216 LVWLTNFLKELQVPLSKPTLLFCDNEAAIHIANNHVFHERTKHIESDCHSVRERLLKGLF 1275
Query: 2474 LPQKISTKLQLADMFTKPLGPAVFSAMLSKLGM 2572
I+T+LQ+AD FTKPL P+ F ++SK+G+
Sbjct: 1276 ELYHINTELQIADPFTKPLYPSHFHRLISKMGL 1308
Score = 189 bits (481), Expect(2) = 9e-50
Identities = 144/510 (28%), Positives = 245/510 (48%), Gaps = 5/510 (0%)
Frame = +1
Query: 3220 AWLSVLNTISRDIVDAFLYADSARALWEDIVQRFGESNGPMIYQIQKDIATAAQGNLSVV 3399
+WL LN++S++I + LY +A A+W+D+ RF +S+ P +Y++++ I + QGNL +
Sbjct: 40 SWL--LNSVSKEIYTSILYFPTAAAIWKDLYTRFHKSSLPRLYKLRQQIHSLRQGNLDLS 97
Query: 3400 AYFTKLKRLWDEYSCL--VPKSICTCGNGKVVADNEMNTRLMQFLMGLNDSYEHVRSQIL 3573
+Y T+ + LW+E + L VP+++ ++ + E N R++ FLMGLND Y+ VRSQIL
Sbjct: 98 SYHTRTQTLWEELTSLQAVPRTV-----EDLLIERETN-RVIDFLMGLNDCYDTVRSQIL 151
Query: 3574 IMEPLPSVNRAYSMILRIERQRTVQVAYPSAQEDVAMVAKIPSGGMRGRGYSPXXXXXXX 3753
+ + LPS++ ++MI + E QR+ +++ + GM +
Sbjct: 152 MKKTLPSLSEVFNMIDQDETQRSARIS--------------TTPGMTSSVFPVSNQSSQS 197
Query: 3754 XXXXXTREEKAQLMCDHCKIPGHEMNECFKLHGYPDWYKTYKEQRNRSMANMVESMSTSN 3933
T ++K + +C +C PGH + C+K HGYP +K S V+ ++N
Sbjct: 198 ALNGDTYQKKERPVCSYCSRPGHVEDTCYKKHGYPTSFK--------SKQKFVKPSISAN 249
Query: 3934 AKVVLEE--KPKEIVGSDMSGIIQKEIAKYLAAQIPLGNTTAAEAGIDYAHFVSHAGTSL 4107
A + EE + D++ +++ +L++++ +T
Sbjct: 250 AAIGSEEVVNNTSVSTGDLTTSQIQQLVSFLSSKLQPPSTPVQP---------------- 293
Query: 4108 REYYALSSFDGVRDGSWILDTGASRHMCANELSMSHIQVLPSSVSVFLPDGSVKHVTHTG 4287
E +++S + PSS S P +G
Sbjct: 294 -EVHSIS-----------------------------VSSDPSSSSTVCP--------ISG 315
Query: 4288 NVTISPSLILTDVLLVPSFKYNLLSVSQLIQTSNLKCVFYPTHCLLQDLQTDKVVGMGKA 4467
+V + LIL DVL +P FK+NLLSVS L ++ + F T C+LQD + +VGMGK
Sbjct: 316 SVHLGRHLILNDVLFIPQFKFNLLSVSSLTKSMGCRIWFDETSCVLQDATRELMVGMGKQ 375
Query: 4468 VGRIFIMSLQPIKTDHFSFAKPVSFPSTCNNVLDDWHIKLGHASSGVLAHLDFLKSSFDD 4647
V ++I+ L + H ++ S ++ D WH +LGH S L + L S
Sbjct: 376 VANLYIVDLDSL--SHPGTDSSITVASVTSH--DLWHKRLGHPSVQKLQPMSSLLSFPKQ 431
Query: 4648 K-QTLKNCEICHKAKQSRLPFPISDSHASS 4734
K T +C +CH +KQ LPF +S ++ SS
Sbjct: 432 KNNTDFHCRVCHISKQKHLPF-VSHNNKSS 460
Score = 39.3 bits (90), Expect(2) = 9e-50
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +3
Query: 3114 MVIALSAKAKLGFINGKIEAPKEDSPKYENWRKVDCMVVS 3233
M ++ AK KLGF++G I P +D P + WR+ + MV S
Sbjct: 1 MTTSIEAKNKLGFVDGSIPKPDDDDPYCKIWRRCNSMVKS 40
>emb|CAN76546.1| hypothetical protein VITISV_010420 [Vitis vinifera]
Length = 1288
Score = 758 bits (1957), Expect = 0.0
Identities = 398/866 (45%), Positives = 539/866 (62%), Gaps = 4/866 (0%)
Frame = +2
Query: 2 DSHASSIFDLIHVDVWGPYASHSFCRTPYFLTVVDDHSRATWIYLMSHKTLVPKMLSTFL 181
+ SS FDL+H+D+WGP++ S +FLT+VDD+SR TW+Y++ +K+ V K + F
Sbjct: 463 NKRCSSTFDLLHLDIWGPFSVGSVEGYKFFLTIVDDYSRVTWVYMLKNKSEVQKYIPDFF 522
Query: 182 HMVHTQFNKRVKEIRSDNGTEFVSGECQSLFHTHGVIHQKACTYTPQQNGIVERKHRHLF 361
V QF K VK IRSDN E + +H+ GVIH ++C TPQQN +VERKH+H+
Sbjct: 523 AFVKKQFGKEVKAIRSDNAPELF---LSNFYHSLGVIHYRSCVETPQQNSVVERKHQHIL 579
Query: 362 DIARALMFQSHLPSHFWVFSVLTAAYIINRLPSKLLHWKSPCEVLYGTKPDYSRMKPFGC 541
++ARAL+F S LP +W +LTA Y+INR PS L+ K+P E+L+ PDYS ++ FGC
Sbjct: 580 NVARALLFXSSLPVCYWSDCILTAVYLINRTPSPFLNNKTPFEILHDKLPDYSHLRVFGC 639
Query: 542 LSFASNLTPHKDKFAPRAHKCVFLGYESGTKGYRLYNLDTNKIQISRDVHFVETQFPYQX 721
L + S L ++ KF+PRA VFLGY G KGY+L +++T I ISR+ + +
Sbjct: 640 LCYVSTLKANRTKFSPRAKAAVFLGYPFGFKGYKLLDIETRSISISRNTNPCSSP----D 695
Query: 722 XXXXXXXXXXXPLFNIPITESSHPDPVSPTLPSPQPVPSVPILRRSSRITKTPLWLNDFV 901
P +SS P + P Q PS R +R++K P +L D+
Sbjct: 696 ISSDLFHDRVLPCIAADNDQSSSVLPRVVSQPPLQVAPS----SRPTRVSKQPSYLKDYH 751
Query: 902 TNAVTIGXXXXXXXXXXXXXXXXXYPVHTFPFHVSPLFHPTYIAFLANVSILQEPHSYAE 1081
+ + +P+ F + P+Y F +VSI+ EP S+A+
Sbjct: 752 CSLIN--------SVAHVETHSTSHPIQHFLSYDK--LSPSYKLFSLSVSIISEPSSFAK 801
Query: 1082 ACKSVEWREAMGKELEALEENHTWELTSLPPGKKAIGCRWVFKVKMNSDGSVERYKARLV 1261
A + EWR AM ELEALEEN T + SLP GK +GC+WV+K K DG++ERYKARLV
Sbjct: 802 AAEIPEWRAAMDCELEALEENKTXSIVSLPVGKHPVGCKWVYKXKHKXDGTIERYKARLV 861
Query: 1262 AKGYDQVYGDSYLDSFSPVAKQVTVRMLIALATKKHWMLDQLDINNAFLHGYLDEDIYMH 1441
AKGY Q G Y+D+FSPVAK VTV++L+A+A K W L QLD+NNAFLHG L+E++YM
Sbjct: 862 AKGYTQREGIDYVDTFSPVAKLVTVKLLLAIAAVKGWHLSQLDVNNAFLHGDLNEEVYMK 921
Query: 1442 PPEGYTA---ALPGQ-VCHLKRSLYGLKQASRQWNVEFCDKLQGFGFHQSEHDHCLFIKA 1609
P GY +LP VC L +SLYGLKQASRQW +F + G GF QS DH LFIK
Sbjct: 922 LPPGYNRKGESLPSNXVCLLHKSLYGLKQASRQWFSKFSTAIMGLGFSQSPSDHSLFIKN 981
Query: 1610 TDSVFMALIVYVDDVLVTASQPDAIAELKTYLHDMFTIKDLGHAKYFLGLEIARSSAGTY 1789
D +F+A++VYVDDV++ ++ AIA+LK+ L+ +F +KDLG KYFLGLEIA+SS G
Sbjct: 982 VDGLFIAJLVYVDDVIIASNNQGAIADLKSELNKLFKLKDLGDVKYFLGLEIAKSSTGIC 1041
Query: 1790 IHQRKYILDILKDVGLLDCKPASTPFPQGLRLRGEEGVALLEPDVYRRLIGRLLYLNMSR 1969
+ QRKY+LD+L D G L CK ASTP ++L +EGV L + +YRRL
Sbjct: 1042 VSQRKYVLDLLSDFGYLGCKAASTPMEANVKLSMDEGVDLPDVSLYRRL----------- 1090
Query: 1970 PDVTYCVQQLSQFINKPYSSHWDAAIHLLRYLKGCPSKGLFYSSADSFHFEAYCDADWAT 2149
SQFI++P H AA +LRYLKG P GLF+ S AY D+DWA
Sbjct: 1091 ----------SQFISRPKLPHLHAAQRILRYLKGNPGMGLFFPSNSELRLMAYTDSDWAR 1140
Query: 2150 CLDTRKSLTGYCIFFGGSLVSWKTKKQLTVSKSSAEAEYRSMSQAVCELLWLSYIATDLQ 2329
C D+R+S+TG+C+F G SLVSWK+KKQ VS+SSAEAEYR+M+ CE+ WL + D
Sbjct: 1141 CPDSRRSVTGFCVFLGNSLVSWKSKKQHIVSRSSAEAEYRAMANTSCEITWLLALLKDFG 1200
Query: 2330 VSFDLPIPLWCDNQAALYIVANPVFHERTKHVEIDCHVVRNQYKSGFVLPQKISTKLQLA 2509
+ P L+CDNQ+AL++ NPVFHERTKH+EIDCH+VR++ +SG + P +ST+ QLA
Sbjct: 1201 IDHSAPALLFCDNQSALHMAENPVFHERTKHIEIDCHLVRDKVQSGVLKPMFVSTEHQLA 1260
Query: 2510 DMFTKPLGPAVFSAMLSKLGMKDFLS 2587
D TK L P+ F ++ K+G+K+ S
Sbjct: 1261 DXLTKALHPSSFKLLIGKMGLKNIFS 1286
Score = 84.0 bits (206), Expect(2) = 3e-28
Identities = 45/151 (29%), Positives = 71/151 (47%)
Frame = +1
Query: 3232 VLNTISRDIVDAFLYADSARALWEDIVQRFGESNGPMIYQIQKDIATAAQGNLSVVAYFT 3411
++N +SR+I D+ LY DSA +W D+ RF +
Sbjct: 99 IINAVSREIADSLLYLDSACDIWRDLNDRFNQ---------------------------- 130
Query: 3412 KLKRLWDEYSCLVPKSICTCGNGKVVADNEMNTRLMQFLMGLNDSYEHVRSQILIMEPLP 3591
+C CG +V D + ++QFLMGLNDSY +R QIL+M+PLP
Sbjct: 131 ----------------VCHCGGLRVWTDYQHREYVLQFLMGLNDSYAQIRGQILMMDPLP 174
Query: 3592 SVNRAYSMILRIERQRTVQVAYPSAQEDVAM 3684
++N+ +S++++ E RTV +Y + M
Sbjct: 175 AINKVFSLVIQEEXHRTVGYSYSGSHNSDPM 205
Score = 73.2 bits (178), Expect(2) = 3e-28
Identities = 33/70 (47%), Positives = 46/70 (65%)
Frame = +3
Query: 3024 PYQLHGSDHPGLILVSNILTGNNFLSWSRSMVIALSAKAKLGFINGKIEAPKEDSPKYEN 3203
PY LH DHPGL LVSN+LTG N+ +W +M++AL+AK K+GF++G I P Y
Sbjct: 28 PYFLHNGDHPGLNLVSNLLTGANYHTWRXAMLMALTAKNKVGFVDGTISRPMSHDLIYGA 87
Query: 3204 WRKVDCMVVS 3233
W + + M+ S
Sbjct: 88 WNRCNSMISS 97
Score = 115 bits (287), Expect = 5e-22
Identities = 73/213 (34%), Positives = 115/213 (53%), Gaps = 8/213 (3%)
Frame = +1
Query: 4120 ALSSFDG----VRDGSWILDTGASRHMCANELSMSHIQVLPSSVSVFLPDGSVKHVTHTG 4287
++S+F G +++ WI+D+GA+ H+C N++S+ + +V V LP G + G
Sbjct: 265 SVSNFAGNKVKIQNKGWIIDSGATHHVC-NDISLFDSSIDVQNVRVTLPTGITVPIDRVG 323
Query: 4288 NVTISPSLILTDVLLVPSFKYNLLSVSQLIQTSNLKCVFYPTHCLLQDLQTDKVVGMGKA 4467
+V +S + L +VL VP+F+YNLLSVS T +L VF P C++Q+ K++G G
Sbjct: 324 SVILSKDVKLLNVLFVPTFRYNLLSVSAFTDTLSLSMVFTPDACIIQEPSRGKMIGKGSR 383
Query: 4468 VGRIFIMSLQPIKTDHFSFAKPVSFPSTCNNVLDDWHIKLGHAS----SGVLAHLDFLKS 4635
G+++ + D +F P+ +N+L WH +LGH S G+ + LDF S
Sbjct: 384 KGQLYQLDFDSFVADK-AFVAASRIPT--SNILSLWHSRLGHPSFSRLKGLQSVLDF-DS 439
Query: 4636 SFDDKQTLKNCEICHKAKQSRLPFPISDSHASS 4734
SFD L C +C AKQ LP+ + SS
Sbjct: 440 SFD----LTPCNVCPLAKQRCLPYISLNKRCSS 468
>gb|KYP37906.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1097
Score = 750 bits (1936), Expect = 0.0
Identities = 377/814 (46%), Positives = 527/814 (64%), Gaps = 9/814 (1%)
Frame = +2
Query: 11 ASSIFDLIHVDVWGPYASHSFCRTPYFLTVVDDHSRATWIYLMSHKTLVPKMLSTFLHMV 190
A IFDL+HVD+WGP S +FLT+VDD SR TW+Y M HK+ V LS+F+ ++
Sbjct: 299 ADEIFDLLHVDIWGPTTPASIFGHRFFLTIVDDKSRHTWVYFMKHKSEVADHLSSFITLI 358
Query: 191 HTQFNKRVKEIRSDNGTEFVSGECQSLFHTHGVIHQKACTYTPQQNGIVERKHRHLFDIA 370
QF K+VK +RSDNG EF+ ++ +H G++HQ +C TPQQNGIVERKH+H+ +A
Sbjct: 359 ENQFGKKVKCVRSDNGPEFL---LKNFYHEKGILHQTSCVETPQQNGIVERKHQHIMTVA 415
Query: 371 RALMFQSHLPSHFWVFSVLTAAYIINRLPSKLLHWKSPCEVLYGTKPDYSRMKPFGCLSF 550
RAL+ QS+LP FW ++V A ++INR PS L K P E++Y PD + +K FGCL++
Sbjct: 416 RALVMQSNLPKSFWFYAVSHAVFLINRQPSSFLENKIPYEIIYNALPDLAGIKVFGCLAY 475
Query: 551 ASNLTPHKDKFAPRAHKCVFLGYESGTKGYRLYNLDTNKIQISRDVHFVETQFPY-QXXX 727
A+ L ++ KF PR +CVFLG++ KG LY+L++ + +SR V + E FP+
Sbjct: 476 ATTLHHNRKKFDPRGRRCVFLGFKPQVKGSILYDLNSRETFLSRHVEYFEHIFPFLPTSP 535
Query: 728 XXXXXXXXXPLFNIPITESSHPDPVSP-TLPSPQPV---PSVPILRRSSRITKTPLWLND 895
P P+ + P P+S T P+ PV P P +++S+R K P +L+D
Sbjct: 536 LDLTQTISLPRHQPPLPIDTDPTPLSTNTTPTSSPVSVVPPPPFVQKSTRPRKLPSYLHD 595
Query: 896 FVTNAVTIGXXXXXXXXXXXXXXXXXYPVHTFPFHVS-PLFHPTYIAFLANVSILQEPHS 1072
+ +T P+++ H+S P+ AF ++S ++EP+S
Sbjct: 596 YHHTLLTT-----------HNSPTISQPLYSIHNHISYSNLSPSQKAFSLSISSIKEPNS 644
Query: 1073 YAEACKSVEWREAMGKELEALEENHTWELTSLPPGKKAIGCRWVFKVKMNSDGSVERYKA 1252
Y EA + W+ A+ EL ALE+N+TW LT LPP K+ +GC+WVFK+K NSDG++ER+KA
Sbjct: 645 YVEAIQDESWKTAIQTELTALEKNNTWILTPLPPNKQVVGCKWVFKLKFNSDGTIERHKA 704
Query: 1253 RLVAKGYDQVYGDSYLDSFSPVAKQVTVRMLIALATKKHWMLDQLDINNAFLHGYLDEDI 1432
RLVAKGY Q G YLD+FSPV K TVR L+A+AT K+W + QLD+N FLHG L E++
Sbjct: 705 RLVAKGYTQTEGLDYLDTFSPVVKMTTVRTLLAVATAKNWHIHQLDVNTTFLHGDLHEEV 764
Query: 1433 YMHPPEGYTAALPGQ---VCHLKRSLYGLKQASRQWNVEFCDKLQGFGFHQSEHDHCLFI 1603
YM PP G T + P Q VC L +SLYGLKQASRQWN + L GF QS D+ LF
Sbjct: 765 YMTPPPGLTVS-PHQSNCVCKLVKSLYGLKQASRQWNAKLTSVLIDSGFKQSMADYSLFT 823
Query: 1604 KATDSVFMALIVYVDDVLVTASQPDAIAELKTYLHDMFTIKDLGHAKYFLGLEIARSSAG 1783
K + F A++VYVDD+++ + P I +K+ L FTIKDLG KYFLG+E+ARSS G
Sbjct: 824 KQFGAKFTAILVYVDDLVLAGNDPTEINYIKSLLDQKFTIKDLGQLKYFLGMEVARSSTG 883
Query: 1784 TYIHQRKYILDILKDVGLLDCKPASTPFPQGLRLRGEEGVALLEPDVYRRLIGRLLYLNM 1963
++QRKY LD+++D GLL KP +P ++L G L +P YRRL+GRL+YL
Sbjct: 884 IALYQRKYALDLIEDTGLLASKPCKSPMDHSVKLHKTVGTPLTDPTQYRRLLGRLIYLTN 943
Query: 1964 SRPDVTYCVQQLSQFINKPYSSHWDAAIHLLRYLKGCPSKGLFYSSADSFHFEAYCDADW 2143
+R D+++ V LSQF+++P H+ AA+ +L+Y+K P KGLF+ S+ + Y D+DW
Sbjct: 944 TRADISFSVNHLSQFMDQPTDVHYQAALRILKYVKNAPGKGLFFPSSSDLTLKGYSDSDW 1003
Query: 2144 ATCLDTRKSLTGYCIFFGGSLVSWKTKKQLTVSKSSAEAEYRSMSQAVCELLWLSYIATD 2323
A+C DTR+S+TG+ F G +L+SWK+KKQ TVSKSSAEAEYR+++Q+ CE W+SY+ D
Sbjct: 1004 ASCSDTRRSVTGFSFFLGPALISWKSKKQATVSKSSAEAEYRALAQSTCEAQWISYLLHD 1063
Query: 2324 LQVSFDLPIPLWCDNQAALYIVANPVFHERTKHV 2425
+ PI L+CDNQ+AL+I +NPVFHERTKH+
Sbjct: 1064 FGLHNFHPIVLFCDNQSALHIASNPVFHERTKHI 1097
Score = 114 bits (286), Expect = 6e-22
Identities = 97/340 (28%), Positives = 157/340 (46%), Gaps = 26/340 (7%)
Frame = +1
Query: 3796 CDHCKIPGHEMNECFKLHGYPDWYK------TYKEQ-------RNRSMANMVESMSTSNA 3936
C +C GH + C+K HGYP +K Y E+ N S ++ + N+
Sbjct: 1 CTYCNKLGHTIETCYKKHGYPPHFKGGSAHNCYNEECDEGNPVLNESAGDISKGEKGENS 60
Query: 3937 KVVLEEKPKEIVGSDMSGIIQKEIAKYLAAQIP---LGNTTAAEAGIDYAHFVSHAGTSL 4107
E+ K ++G ++ ++ + + A I L +T+ ++GI Y VS+
Sbjct: 61 LGFTAEQHKALLG-----MLTQQQSHHTANHITTYELPSTSDPQSGIVYT--VSN----- 108
Query: 4108 REYYALSSFDGVRDGSWILDTGASRHMCAN-ELSMSHIQVLPSSVSVFLPDGSVKHVTHT 4284
+ + WILD+GA+ H+C + +L ++ P V + LPDG
Sbjct: 109 ----------NMNNNIWILDSGATDHICRSIKLFQCLRRIKP--VKIHLPDGKCVTTNLC 156
Query: 4285 GNVTISPSLILTDVLLVPSFKYNLLSVSQLIQTSNLKCVFYPTHCLLQDLQTDKVVGMGK 4464
G++ S L DVL +P F +NL+SVS+LI+ + F C +QD Q+ K++G K
Sbjct: 157 GSIFFSEDFFLADVLYIPEFNFNLVSVSRLIRQLGCRLTFSGDLCDIQDSQSMKMIGAAK 216
Query: 4465 AVGRIFIMSLQPIKTDHFSFAKPVSFPSTCNNV----LDDWHIKLGHASSGVLAH--LDF 4626
++++ +P K + + NN D WHI+LGH LAH L
Sbjct: 217 HNMGLYVLDWKP---------KVCLYLHSINNFHSYDNDLWHIRLGH-----LAHEKLQA 262
Query: 4627 LKSSF---DDKQTLKNCEICHKAKQSRLPFPISDSHASSI 4737
+KS+F D K+ C +C+ AKQ +LPF S + A I
Sbjct: 263 MKSNFPFIDCKKNKDPCNVCYLAKQRQLPFSHSVTKADEI 302
>gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1461
Score = 758 bits (1956), Expect = 0.0
Identities = 388/860 (45%), Positives = 555/860 (64%), Gaps = 5/860 (0%)
Frame = +2
Query: 14 SSIFDLIHVDVWGPYASHSFCRTPYFLTVVDDHSRATWIYLMSHKTLVPKMLSTFLHMVH 193
+S F+L+H+DVWGP++ + YFLT+VDDHSRATWIYL+ K+ V + F+ +V
Sbjct: 622 NSTFELLHIDVWGPFSVETVEGYKYFLTIVDDHSRATWIYLLKSKSDVLTVFPAFIDLVE 681
Query: 194 TQFNKRVKEIRSDNGTEFVSGECQSLFHTHGVIHQKACTYTPQQNGIVERKHRHLFDIAR 373
Q++ RVK +RSDN E E + G++ +C TP+QN +VERKH+H+ ++AR
Sbjct: 682 NQYDTRVKSVRSDNAKELAFTE---FYKAKGIVSFHSCPETPEQNSVVERKHQHILNVAR 738
Query: 374 ALMFQSHLPSHFWVFSVLTAAYIINRLPSKLLHWKSPCEVLYGTKPDYSRMKPFGCLSFA 553
ALMFQS++ +W VLTA ++INR PS LL K+P EVL G PDYS++K FGCL ++
Sbjct: 739 ALMFQSNMSLPYWGDCVLTAVFLINRTPSALLSNKTPFEVLTGKLPDYSQLKTFGCLCYS 798
Query: 554 SNLTPHKDKFAPRAHKCVFLGYESGTKGYRLYNLDTNKIQISRDVHFVETQFPYQXXXXX 733
S + + KF PR+ CVFLGY G KGY+L +L++N + ISR+V F E FP
Sbjct: 799 STSSKQRHKFLPRSRACVFLGYPFGFKGYKLLDLESNVVHISRNVEFHEELFPLASSQQS 858
Query: 734 XXXXXXXPLFNIPITESSHPDPVSPTLPSPQPVPSVPILRRSSRITKTPLWLNDFVTNAV 913
+F P+ S + ++ LPSPQ PS I +R RITK P L D+ V
Sbjct: 859 ATTASD--VFT-PMDPLSSGNSITSHLPSPQISPSTQISKR--RITKFPAHLQDYHCYFV 913
Query: 914 TIGXXXXXXXXXXXXXXXXXYPVHTFPFHVSPLFHPTYIAFLANVSILQEPHSYAEACKS 1093
+P+ + + P+++ ++ N+S + P SY EA S
Sbjct: 914 N---------------KDDSHPISSSLSYSQ--ISPSHMLYINNISKIPIPQSYHEAKDS 956
Query: 1094 VEWREAMGKELEALEENHTWELTSLPPGKKAIGCRWVFKVKMNSDGSVERYKARLVAKGY 1273
EW A+ +E+ A+E TWE+TSLPPGKKA+GC+WVF VK ++DGS+ER+KAR+VAKGY
Sbjct: 957 KEWCGAIDQEIGAMERTDTWEITSLPPGKKAVGCKWVFTVKFHADGSLERFKARIVAKGY 1016
Query: 1274 DQVYGDSYLDSFSPVAKQVTVRMLIALATKKHWMLDQLDINNAFLHGYLDEDIYMHPPEG 1453
Q G Y ++FSPVAK TV++L+ ++ K W L+QLDI+NAFL+G L+E IYM P+G
Sbjct: 1017 TQKEGLDYTETFSPVAKMATVKLLLKVSASKKWYLNQLDISNAFLNGDLEETIYMKLPDG 1076
Query: 1454 Y-----TAALPGQVCHLKRSLYGLKQASRQWNVEFCDKLQGFGFHQSEHDHCLFIKATDS 1618
Y T+ P VC LK+S+YGLKQASRQW ++F + L GF + DH LF++ S
Sbjct: 1077 YADIKGTSLPPNVVCRLKKSIYGLKQASRQWFLKFSNSLLALGFEKQHGDHTLFVRCIGS 1136
Query: 1619 VFMALIVYVDDVLVTASQPDAIAELKTYLHDMFTIKDLGHAKYFLGLEIARSSAGTYIHQ 1798
F+ L+VYVDD+++ ++ A L L F +++LG KYFLGLE+AR+S G + Q
Sbjct: 1137 EFIVLLVYVDDIVIASTTEQAAQSLTEALKASFKLRELGPLKYFLGLEVARTSEGISLSQ 1196
Query: 1799 RKYILDILKDVGLLDCKPASTPFPQGLRLRGEEGVALLEPDVYRRLIGRLLYLNMSRPDV 1978
RKY L++L +LDCKP+S P +RL +G+ L + ++YRRL+G+L+YL ++RPD+
Sbjct: 1197 RKYALELLTSADMLDCKPSSIPMTPNIRLSKNDGLLLEDKEMYRRLVGKLMYLTITRPDI 1256
Query: 1979 TYCVQQLSQFINKPYSSHWDAAIHLLRYLKGCPSKGLFYSSADSFHFEAYCDADWATCLD 2158
T+ V +L QF + P ++H A +L+Y+KG +GLFYS+ D + Y DADW TC D
Sbjct: 1257 TFAVNKLCQFSSAPRTAHLAAVYKVLQYIKGTVGQGLFYSAEDDLTLKGYTDADWGTCPD 1316
Query: 2159 TRKSLTGYCIFFGGSLVSWKTKKQLTVSKSSAEAEYRSMSQAVCELLWLSYIATDLQVSF 2338
+R+S TG+ +F G SL+SW++KKQ TVS+SSAEAEYR+++ A CE+ WLS + L+V
Sbjct: 1317 SRRSTTGFTMFVGSSLISWRSKKQPTVSRSSAEAEYRALALASCEMAWLSTLLLALRVHS 1376
Query: 2339 DLPIPLWCDNQAALYIVANPVFHERTKHVEIDCHVVRNQYKSGFVLPQKISTKLQLADMF 2518
+PI L+ D+ AA+YI NPVFHERTKH+EIDCH VR + +G + + TK Q+AD+
Sbjct: 1377 GVPI-LYSDSTAAVYIATNPVFHERTKHIEIDCHTVREKLDNGQLKLLHVKTKDQVADIL 1435
Query: 2519 TKPLGPAVFSAMLSKLGMKD 2578
TKPL P F+ +LSK+ +++
Sbjct: 1436 TKPLFPYQFAHLLSKMSIQN 1455
Score = 182 bits (461), Expect = 2e-42
Identities = 143/545 (26%), Positives = 243/545 (44%), Gaps = 17/545 (3%)
Frame = +1
Query: 3151 SLMEKLKHRRKIHLNTKIGEKLIAWLSVLNTISRDIVDAFLYADSARALWEDIVQRFGES 3330
SL L+ L ++ + +WL LN++S I + L + A +W D+ RF +
Sbjct: 111 SLPRPLESDPNFRLWSRCNSMVKSWL--LNSVSPQIYRSILRLNDATDIWRDLFDRFNLT 168
Query: 3331 NGPMIYQIQKDIATAAQGNLSVVAYFTKLKRLWDEY-SCLVPKSICTCGNGKVVADNEMN 3507
N P Y + ++I QG +S+ Y+T LK LWD+ S CTCG +
Sbjct: 169 NLPRTYNLTQEIQDLRQGTMSLSEYYTLLKTLWDQLDSTEALDDPCTCGKAVRLYQKAEK 228
Query: 3508 TRLMQFLMGLNDSYEHVRSQILIMEPLPSVNRAYSMILRIERQRTV-QVAYPSAQEDVAM 3684
++M+FL GLN+SY VR QI+ + LPS+ Y ++ + Q+ V P A V+
Sbjct: 229 AKIMKFLAGLNESYAIVRRQIIAKKALPSLAEVYHILDQDNSQKGFFNVVAPPAAFQVSE 288
Query: 3685 VAKIPSGGMRGRGYSPXXXXXXXXXXXXTREEKAQLMCDHCKIPGHEMNECFKLHGYPDW 3864
V+ P SP + K + C C GH C+K HG+P
Sbjct: 289 VSHSPIT-------SPEIMYVQ------SGPNKGRPTCSFCNRVGHIAERCYKKHGFPPG 335
Query: 3865 YKTYKEQRNRSMANMVESMSTSNAKVVLEEKPKEIVGSDMSGIIQKEIAKY---LAAQIP 4035
+ + ++ + + + + + + + G+ IQ IA + L QI
Sbjct: 336 FTPKGKSSDKPPKPQAVAAQVTLSPDKMTGQLETLAGNFSPDQIQNLIALFSSQLQPQIV 395
Query: 4036 LGNTTAAEAGIDYAHFVSHAGT--SLREYYALS----SFDGVRDGSWILDTGASRHMCAN 4197
T +++ + V+ +G S Y + S + + +W++D+GA+ H+ +
Sbjct: 396 SPQTASSQHEASSSQSVAPSGILFSPSTYCFIGILAVSHNSLSSDTWVIDSGATHHVSHD 455
Query: 4198 ELSMSHIQVLPSSVSVF--LPDGSVKHVTHTGNVTISPSLILTDVLLVPSFKYNLLSVSQ 4371
Q L +S+ F LP G ++ G V I+ +IL +VL +P F+ NL+S+S
Sbjct: 456 R---KLFQTLDTSIVSFVNLPTGPNVRISGVGTVLINKDIILQNVLFIPEFRLNLISISS 512
Query: 4372 LIQTSNLKCVFYPTHCLLQDLQTDKVVGMGKAVGRIFIMSLQPIKTDHFSFAKPVSFPST 4551
L + +F P+ C +QDL +G GK +G ++++ Q P+
Sbjct: 513 LTTDLGTRVIFDPSCCQIQDLTKGLTLGEGKRIGNLYVLDTQS--------------PAI 558
Query: 4552 CNNVLDD---WHIKLGHASSGVLAHL-DFLKSSFDDKQTLKNCEICHKAKQSRLPFPISD 4719
N + D WH +LGH S L L + L ++ + C +CH AKQ +L FP ++
Sbjct: 559 SVNAVVDVSVWHKRLGHPSFSRLDSLSEVLGTTRHKNKKSAYCHVCHLAKQKKLSFPSAN 618
Query: 4720 SHASS 4734
+ +S
Sbjct: 619 NICNS 623
Score = 65.9 bits (159), Expect = 5e-07
Identities = 29/72 (40%), Positives = 44/72 (61%)
Frame = +3
Query: 3018 EDPYQLHGSDHPGLILVSNILTGNNFLSWSRSMVIALSAKAKLGFINGKIEAPKEDSPKY 3197
+ P+ LH +DHPGL ++S+ L + WS +M I+L AK KLGF++G + P E P +
Sbjct: 63 QSPFFLHSADHPGLSIISHRLDETTYGDWSVAMRISLDAKNKLGFVDGSLPRPLESDPNF 122
Query: 3198 ENWRKVDCMVVS 3233
W + + MV S
Sbjct: 123 RLWSRCNSMVKS 134
>dbj|BAB10503.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1475
Score = 748 bits (1931), Expect = 0.0
Identities = 385/856 (44%), Positives = 539/856 (62%), Gaps = 6/856 (0%)
Frame = +2
Query: 23 FDLIHVDVWGPYASHSFCRTPYFLTVVDDHSRATWIYLMSHKTLVPKMLSTFLHMVHTQF 202
FDLIH+D WGP+A+ + YFLT+VDD+SRATW+YLM K V ++ FL MV TQ+
Sbjct: 642 FDLIHIDTWGPFATPTTEGYKYFLTIVDDYSRATWVYLMKAKNDVLQIFPDFLKMVETQY 701
Query: 203 NKRVKEIRSDNGTEFVSGECQSLFHTHGVIHQKACTYTPQQNGIVERKHRHLFDIARALM 382
VK +RSDN E ++L+ G+I +C TPQQN +VERKH+H+ ++ARALM
Sbjct: 702 GTLVKAVRSDNAPEL---RFEALYQAKGIISYHSCPETPQQNSVVERKHQHILNVARALM 758
Query: 383 FQSHLPSHFWVFSVLTAAYIINRLPSKLLHWKSPCEVLYGTKPDYSRMKPFGCLSFASNL 562
F++++P FW +L+A ++INRLP+ LL KSP E+L+ PDY+ +K FGCL + S
Sbjct: 759 FEANMPLEFWGDCILSAVFLINRLPTPLLSNKSPFELLHLKVPDYTSLKVFGCLCYESTS 818
Query: 563 TPHKDKFAPRAHKCVFLGYESGTKGYRLYNLDTNKIQISRDVHFVETQFPYQXXXXXXXX 742
+ KFAPRA CVFLGY SG KGY+L +L+TN I ISR V F ET FP+
Sbjct: 819 PQQRHKFAPRARACVFLGYPSGYKGYKLLDLETNTIHISRHVVFYETVFPFTDKTI---- 874
Query: 743 XXXXPLFNIPITESSHPDPVSPTLPSPQPVPSVPILRRSSRITKTPLWLNDFVTNAVTIG 922
IP DPV + +P S R ++ P +L D+ NAV
Sbjct: 875 --------IPRDVFDLVDPVHENIENPPSTSESAPKVSSKRESRPPGYLQDYFCNAVP-- 924
Query: 923 XXXXXXXXXXXXXXXXXYPVHTFPFHVSPLFHPTYIAFLANVSILQEPHSYAEACKSVEW 1102
YP++ + + + A++ V+ EP +YA+A K EW
Sbjct: 925 ----------DVTKDVRYPLNAYINYTQ--LSEEFTAYICAVNKYPEPCTYAQAKKIKEW 972
Query: 1103 REAMGKELEALEENHTWELTSLPPGKKAIGCRWVFKVKMNSDGSVERYKARLVAKGYDQV 1282
+AM E++ALE +TW + SLP GKK IGC+WVFKVK+N+DGS+ER+KARLVAKGY Q
Sbjct: 973 LDAMEIEIDALESTNTWSVCSLPQGKKPIGCKWVFKVKLNADGSLERFKARLVAKGYTQR 1032
Query: 1283 YGDSYLDSFSPVAKQVTVRMLIALATKKHWMLDQLDINNAFLHGYLDEDIYMHPPEGYTA 1462
G Y D+FSPVAK TV+ L+++A K W L QLDI+NAFL+G L E+IYM P GY+
Sbjct: 1033 EGLDYYDTFSPVAKMTTVKTLLSVAAIKEWSLHQLDISNAFLNGDLKEEIYMTLPPGYSM 1092
Query: 1463 ALPG-----QVCHLKRSLYGLKQASRQWNVEFCDKLQGFGFHQSEHDHCLFIKATDSVFM 1627
G V L++SLYGLKQASRQW ++F L+ GF +S DH LF + + ++
Sbjct: 1093 KQGGVLPQNPVLKLQKSLYGLKQASRQWYLKFSSTLKKLGFKKSHADHTLFTRISGKAYI 1152
Query: 1628 ALIVYVDDVLVTASQPDAIAELKTYLHDMFTIKDLGHAKYFLGLEIARSSAGTYIHQRKY 1807
AL+VYVDD+++ + + I ELK L F ++DLG KYFLGLEIAR+ G + QRKY
Sbjct: 1153 ALLVYVDDIVIAGNNDENIEELKKDLAKAFKLRDLGPMKYFLGLEIARTKEGISVCQRKY 1212
Query: 1808 ILDILKDVGLLDCKPASTPFPQGLRLRGEEGVALLE-PDVYRRLIGRLLYLNMSRPDVTY 1984
+++L+D GLL C+P++ P L+L +++ P+VYRRL+G+L+YL ++RPD+TY
Sbjct: 1213 TMELLEDTGLLGCRPSTIPMEPSLKLSQHNDEHVIDNPEVYRRLVGKLMYLTITRPDITY 1272
Query: 1985 CVQQLSQFINKPYSSHWDAAIHLLRYLKGCPSKGLFYSSADSFHFEAYCDADWATCLDTR 2164
+ +L QF + P +SH AA ++ YLKG GLFYSS +AY DADW +C+D+R
Sbjct: 1273 AINRLCQFSSSPKNSHLKAAQKVVHYLKGTIGLGLFYSSKSDLCLKAYTDADWGSCVDSR 1332
Query: 2165 KSLTGYCIFFGGSLVSWKTKKQLTVSKSSAEAEYRSMSQAVCELLWLSYIATDLQVSFDL 2344
+S +G C+F G SL+SWK+KKQ S SSAE+EYR+M+ E+ WL + + QV
Sbjct: 1333 RSTSGICMFLGDSLISWKSKKQNMASSSSAESEYRAMAMGSREIAWLVKLLAEFQVKQTK 1392
Query: 2345 PIPLWCDNQAALYIVANPVFHERTKHVEIDCHVVRNQYKSGFVLPQKISTKLQLADMFTK 2524
P+PL+CD+ AA++I N VFHERTKH+E DCH+ R++ + G + + T QLAD+ TK
Sbjct: 1393 PVPLFCDSTAAIHIANNAVFHERTKHIENDCHITRDRIEQGMLKTMHVDTTSQLADVLTK 1452
Query: 2525 PLGPAVFSAMLSKLGM 2572
PL P +F++++ K+ +
Sbjct: 1453 PLFPTLFNSLIGKMSL 1468
Score = 198 bits (504), Expect(2) = 2e-59
Identities = 152/532 (28%), Positives = 261/532 (49%), Gaps = 39/532 (7%)
Frame = +1
Query: 3232 VLNTISRDIVDAFLYADSARALWEDIVQRFGESNGPMIYQIQKDIATAAQGNLSVVAYFT 3411
+LN++++ I + L + A +W+D+ RF +N P YQ+ + I + QG +S+ Y+T
Sbjct: 134 ILNSVTKQIYKSILRFNDAAEIWKDLDTRFHITNLPRSYQLTQQIWSLQQGTMSLSDYYT 193
Query: 3412 KLKRLWDEY---SCLVPKSICTCGNGKVVADNEM--NTRLMQFLMGLNDSYEHVRSQILI 3576
LK LWD+ SC+ CTC +A M ++++++FL GLN+SY +RSQI++
Sbjct: 194 ALKTLWDDLDGASCVSTCKNCTC----CIATASMIEHSKIVKFLSGLNESYSTIRSQIIM 249
Query: 3577 MEPLPSVNRAYSMILRIERQR----------TVQVAYPSAQEDVAMVAKIPSGGMRGRGY 3726
+ +P + Y+++ + QR T V+ P + + +AK G
Sbjct: 250 KKTIPDLAEIYNLLDQDHSQRNIVTMPTNASTFNVSAPQSDQFAVNLAK-------SFGT 302
Query: 3727 SPXXXXXXXXXXXXTREEKAQLMCDHCKIPGHEMNECFKLHGYPDWYKTYKEQR----NR 3894
P K ++ C HC GH + C+K+HGYP +K +K+++ +
Sbjct: 303 QP----------------KPKVQCSHCGYTGHNADTCYKIHGYPVGFK-HKDKKTVTPSE 345
Query: 3895 SMANMVESMSTSNAKVVLEEKPK-----EIVGSDMSGIIQKEIAKYLAAQI-----PLGN 4044
++V +++ ++ KV + + E+VGS IQ IA Y + Q+ P+
Sbjct: 346 KPKSVVANLALTDGKVSVTQGIGPDGIVELVGSMSKSQIQDVIA-YFSTQLHNPAKPITV 404
Query: 4045 TTAAEAGIDYAHF---VSHAGTSLREYYALSSFDGVRD-GSWILDTGASRHMCANELSMS 4212
+ A D +S + ++LR +L+S V +WI+D+GA+ H+ +
Sbjct: 405 ASFASTNNDNGSTFTGISFSPSTLRLLCSLTSSKKVLSLNTWIIDSGATHHVSYDRNLFE 464
Query: 4213 HIQVLPSSVSVFLPDGSVKHVTHTGNVTISPSLILTDVLLVPSFKYNLLSVSQLIQTSNL 4392
+ S+ V LP GS + G + ++ +L L +VL +P F+ NLLSVSQ QT ++
Sbjct: 465 SLSDGLSN-EVTLPTGSNVKIAGIGVIKLNSNLTLKNVLYIPEFRLNLLSVSQ--QTKDM 521
Query: 4393 KCVFY--PTHCLLQDLQTDKVVGMGKAVGRIFIMSLQPIKTDHFSFAKPVSFPSTCNNVL 4566
KC Y C++QD ++ +G G +G ++++ ++ V+ CN V+
Sbjct: 522 KCKIYFDEDCCVIQDPIKEQKIGRGNQIGGLYVLDTSSVECTSVDINSSVTEKQYCNAVV 581
Query: 4567 DD--WHIKLGHAS--SGVLAHLDFLKSSFDDKQTLKNCEICHKAKQSRLPFP 4710
D WH +LGH S + H D L +K+ L +C IC KAKQ L FP
Sbjct: 582 DSALWHSRLGHPSYEKNDVLH-DVLGLPKRNKEDLVHCSICQKAKQKHLSFP 632
Score = 63.2 bits (152), Expect(2) = 2e-59
Identities = 28/70 (40%), Positives = 40/70 (57%)
Frame = +3
Query: 3024 PYQLHGSDHPGLILVSNILTGNNFLSWSRSMVIALSAKAKLGFINGKIEAPKEDSPKYEN 3203
P+ L D PG LVS +L G NF SW +M ++L AK K+ F++G + P E P +
Sbjct: 63 PFALSNGDSPGNTLVSEVLDGTNFSSWKIAMFVSLYAKNKIAFVDGTLPRPPESDPSFRV 122
Query: 3204 WRKVDCMVVS 3233
W + + MV S
Sbjct: 123 WSRCNSMVKS 132
>gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1454
Score = 734 bits (1896), Expect = 0.0
Identities = 376/865 (43%), Positives = 551/865 (63%), Gaps = 9/865 (1%)
Frame = +2
Query: 20 IFDLIHVDVWGPYASHSFCRTPYFLTVVDDHSRATWIYLMSHKTLVPKMLSTFLHMVHTQ 199
IFDL+H+DVWGP++ + YFLT+VDDHSRATW+YL+ K+ V + F+ V Q
Sbjct: 613 IFDLLHIDVWGPFSVETVEGYKYFLTIVDDHSRATWMYLLKTKSEVLTVFPAFIQQVENQ 672
Query: 200 FNKRVKEIRSDNGTEFVSGECQSLFHTHGVIHQKACTYTPQQNGIVERKHRHLFDIARAL 379
+ +VK +RSDN E + S + G++ +C TP+QN +VERKH+H+ ++ARAL
Sbjct: 673 YKVKVKAVRSDNAPEL---KFTSFYAEKGIVSFHSCPETPEQNSVVERKHQHILNVARAL 729
Query: 380 MFQSHLPSHFWVFSVLTAAYIINRLPSKLLHWKSPCEVLYGTKPDYSRMKPFGCLSFASN 559
MFQS +P W VLTA ++INR PS+LL K+P E+L GT P Y +++ FGCL ++S
Sbjct: 730 MFQSQVPLSLWGDCVLTAVFLINRTPSQLLMNKTPYEILTGTAPVYEQLRTFGCLCYSST 789
Query: 560 LTPHKDKFAPRAHKCVFLGYESGTKGYRLYNLDTNKIQISRDVHFVETQFPYQXXXXXXX 739
+ KF PR+ C+FLGY SG KGY+L +L++N + ISR+V F E FP
Sbjct: 790 SPKQRHKFQPRSRACLFLGYPSGYKGYKLMDLESNTVFISRNVQFHEEVFPLAKNPGSES 849
Query: 740 XXXXXPLFNIPITESSHPDPVSPTLPSPQPVPS----VPILRRSSRITKTPLWLNDFVTN 907
LF + SS +S T SP +PS +P S R+ K P LND+ N
Sbjct: 850 SLK---LFTPMVPVSS--GIISDTTHSPSSLPSQISDLPPQISSQRVRKPPAHLNDYHCN 904
Query: 908 AVTIGXXXXXXXXXXXXXXXXXYPVHTFPFHVSPLFHPTYIAFLANVSILQEPHSYAEAC 1087
+ YP+ + + P+++ ++ N++ + P +YAEA
Sbjct: 905 TMQ---------------SDHKYPISSTISYSK--ISPSHMCYINNITKIPIPTNYAEAQ 947
Query: 1088 KSVEWREAMGKELEALEENHTWELTSLPPGKKAIGCRWVFKVKMNSDGSVERYKARLVAK 1267
+ EW EA+ E+ A+E+ +TWE+T+LP GKKA+GC+WVF +K +DG++ERYKARLVAK
Sbjct: 948 DTKEWCEAVDAEIGAMEKTNTWEITTLPKGKKAVGCKWVFTLKFLADGNLERYKARLVAK 1007
Query: 1268 GYDQVYGDSYLDSFSPVAKQVTVRMLIALATKKHWMLDQLDINNAFLHGYLDEDIYMHPP 1447
GY Q G Y D+FSPVAK T+++L+ ++ K W L QLD++NAFL+G L+E+I+M P
Sbjct: 1008 GYTQKEGLDYTDTFSPVAKMTTIKLLLKVSASKKWFLKQLDVSNAFLNGELEEEIFMKIP 1067
Query: 1448 EGYTA----ALPGQVC-HLKRSLYGLKQASRQWNVEFCDKLQGFGFHQSEHDHCLFIKAT 1612
EGY LP V LKRS+YGLKQASRQW +F L GF ++ DH LF+K
Sbjct: 1068 EGYAERKGIVLPSNVVLRLKRSIYGLKQASRQWFKKFSSSLLSLGFKKTHGDHTLFLKMY 1127
Query: 1613 DSVFMALIVYVDDVLVTASQPDAIAELKTYLHDMFTIKDLGHAKYFLGLEIARSSAGTYI 1792
D F+ ++VYVDD+++ ++ A A+L L F ++DLG KYFLGLE+AR++AG I
Sbjct: 1128 DGEFVIVLVYVDDIVIASTSEAAAAQLTEELDQRFKLRDLGDLKYFLGLEVARTTAGISI 1187
Query: 1793 HQRKYILDILKDVGLLDCKPASTPFPQGLRLRGEEGVALLEPDVYRRLIGRLLYLNMSRP 1972
QRKY L++L+ G+L CKP S P L++R ++G + + + YRR++G+L+YL ++RP
Sbjct: 1188 CQRKYALELLQSTGMLACKPVSVPMIPNLKMRKDDGDLIEDIEQYRRIVGKLMYLTITRP 1247
Query: 1973 DVTYCVQQLSQFINKPYSSHWDAAIHLLRYLKGCPSKGLFYSSADSFHFEAYCDADWATC 2152
D+T+ V +L QF + P ++H AA +L+Y+KG +GLFYS++ + + D+DWA+C
Sbjct: 1248 DITFAVNKLCQFSSAPRTTHLTAAYRVLQYIKGTVGQGLFYSASSDLTLKGFADSDWASC 1307
Query: 2153 LDTRKSLTGYCIFFGGSLVSWKTKKQLTVSKSSAEAEYRSMSQAVCELLWLSYIATDLQV 2332
D+R+S T + +F G SL+SW++KKQ TVS+SSAEAEYR+++ A CE++WL + LQ
Sbjct: 1308 QDSRRSTTSFTMFVGDSLISWRSKKQHTVSRSSAEAEYRALALATCEMVWLFTLLVSLQA 1367
Query: 2333 SFDLPIPLWCDNQAALYIVANPVFHERTKHVEIDCHVVRNQYKSGFVLPQKISTKLQLAD 2512
S +PI L+ D+ AA+YI NPVFHERTKH+++DCH VR + +G + + T+ Q+AD
Sbjct: 1368 SPPVPI-LYSDSTAAIYIATNPVFHERTKHIKLDCHTVRERLDNGELKLLHVRTEDQVAD 1426
Query: 2513 MFTKPLGPAVFSAMLSKLGMKDFLS 2587
+ TKPL P F + SK+ + + S
Sbjct: 1427 ILTKPLFPYQFEHLKSKMSILNIFS 1451
Score = 173 bits (438), Expect = 8e-40
Identities = 145/554 (26%), Positives = 243/554 (43%), Gaps = 25/554 (4%)
Frame = +1
Query: 3151 SLMEKLKHRRKIHLNTKIGEKLIAWLSVLNTISRDIVDAFLYADSARALWEDIVQRFGES 3330
+L L+ L ++ + +WL LN++S I + L + A +W D+ RF +
Sbjct: 107 TLSRPLESDLNFRLWSRCNSMVKSWL--LNSVSPQIYRSILRMNDASDIWRDLNSRFNVT 164
Query: 3331 NGPMIYQIQKDIATAAQGNLSVVAYFTKLKRLWDEY-SCLVPKSICTCGNGKVVADNEMN 3507
N P Y + ++I QG LS+ Y+T+LK LWD+ S CTCG +
Sbjct: 165 NLPRTYNLTQEIQDFRQGTLSLSEYYTRLKTLWDQLDSTEALDEPCTCGKAMRLQQKAEQ 224
Query: 3508 TRLMQFLMGLNDSYEHVRSQILIMEPLPSVNRAYSMILRIERQRTV-QVAYPSAQEDVAM 3684
++++FL GLN+SY VR QI+ + LPS+ Y ++ + Q++ V P A V+
Sbjct: 225 AKIVKFLAGLNESYAIVRRQIIAKKALPSLGEVYHILDQDNSQQSFSNVVAPPAAFQVSE 284
Query: 3685 VAKIPSGGMRGRGYSPXXXXXXXXXXXXTREEKAQLMCDHCKIPGHEMNECFKLHGYPDW 3864
+ + PS K + +C GH C+K HG+P
Sbjct: 285 ITQSPS-------------MDPTVCYVQNGPNKGRPICSFYNRVGHIAERCYKKHGFPPG 331
Query: 3865 YKT-----YKEQRNRSMANMVESMSTSNAKVVLEEKPKEIVGSDMSGIIQKEIAKYLAAQ 4029
+ K Q+ + +A V S N + + +VG+ +Q+ IA + +
Sbjct: 332 FTPKGKAGEKLQKPKPLAANVAESSEVNTSL------ESMVGNLSKEQLQQFIAMFSS-- 383
Query: 4030 IPLGNTTAAEAGIDYAHFVSHAGTSLREYYALS--SFDGV--------RDGSWILDTGAS 4179
L NT + YA + +L ++ S SF G+ +W++D+GA+
Sbjct: 384 -QLQNTPPS----TYATASTSQSDNLGICFSPSTYSFIGILTVARHTLSSATWVIDSGAT 438
Query: 4180 RHMCANELSMSHIQVLPSSVSVFLPDGSVKHVTHTGNVTISPSLILTDVLLVPSFKYNLL 4359
H+ + S + S +V LP G ++ G + ++ ++L +VL +P F+ NL+
Sbjct: 439 HHVSHDRSLFSSLDTSVLS-AVNLPTGPTVKISGVGTLKLNDDILLKNVLFIPEFRLNLI 497
Query: 4360 SVSQLIQTSNLKCVFYPTHCLLQDLQTDKVVGMGKAVGRIFIMSLQPIKTDHFSFAKPVS 4539
S+S L + +F C +QDL +++G G+ V ++++ V
Sbjct: 498 SISSLTDDIGSRVIFDKNSCEIQDLIKGRMLGQGRRVANLYLLD--------------VG 543
Query: 4540 FPSTCNNVLDD---WHIKLGHASSGVLAHLDFLKSSFDDKQTLKN-----CEICHKAKQS 4695
S N + D WH +LGHAS L LD + S + KN C +CH AKQ
Sbjct: 544 DQSISVNAVVDISMWHRRLGHAS---LQRLDAISDSLGTTRH-KNKGSDFCHVCHLAKQR 599
Query: 4696 RLPFPISDSHASSI 4737
+L FP S+ I
Sbjct: 600 KLSFPTSNKVCKEI 613
Score = 63.9 bits (154), Expect = 2e-06
Identities = 29/72 (40%), Positives = 44/72 (61%)
Frame = +3
Query: 3018 EDPYQLHGSDHPGLILVSNILTGNNFLSWSRSMVIALSAKAKLGFINGKIEAPKEDSPKY 3197
+ P+ LH +DHPGL ++S+ L N+ WS +M+I+L AK K GFI+G + P E +
Sbjct: 59 QSPFFLHSADHPGLNIISHRLDETNYGDWSVAMLISLDAKNKTGFIDGTLSRPLESDLNF 118
Query: 3198 ENWRKVDCMVVS 3233
W + + MV S
Sbjct: 119 RLWSRCNSMVKS 130
>emb|CAN73437.1| hypothetical protein VITISV_031733 [Vitis vinifera]
Length = 1322
Score = 721 bits (1862), Expect = 0.0
Identities = 401/881 (45%), Positives = 517/881 (58%), Gaps = 20/881 (2%)
Frame = +2
Query: 5 SHASSI--FDLIHVDVWGPYASHSFCRTPYFLTVVDDHSRATWIYLMSHKTLVPKMLSTF 178
S SSI F+LIH D+WGPY S
Sbjct: 517 SSISSIRPFELIHCDIWGPYKIASLSAN-------------------------------- 544
Query: 179 LHMVHTQFNKRVKEIRSDNGTEFVSGECQSLFHTHGVIHQKACTYTPQQNGIVERKHRHL 358
IR DNG EF S + F G +Q +C YTPQQNG+VERKHRH+
Sbjct: 545 --------------IRVDNGGEFFS--MREFFKQKGTTYQHSCVYTPQQNGVVERKHRHI 588
Query: 359 FDIARALMFQSHLPSHFWVFSVLTAAYIINRLPSKLLHWKSPCEVLYGTKPDYSRMKPFG 538
+ ARA FQ+HLP FW V TA +IINRLP+ LL ++P E LYG P YS ++ FG
Sbjct: 589 LESARAFRFQAHLPLPFWAECVSTAVHIINRLPTPLLSRQTPFERLYGKLPSYSHIRVFG 648
Query: 539 CLSFASNL-TPHKDKFAPRAHKCVFLGYESGTKGYRLYNLDTNKIQISRDVHFVETQFPY 715
CL++A+N+ PHK FAPRA +C+FLGY G K Y+LY+LDT+++ SRDV F ET FPY
Sbjct: 649 CLAYATNVHVPHK--FAPRAKRCIFLGYPVGQKAYKLYDLDTHQMFTSRDVVFHETIFPY 706
Query: 716 QXXXXXXXXXXXXPLFNI-----PITESSHPDPVSP-----------TLPSPQPVPSVPI 847
+ +I P+ + S P+P+SP T PS P PI
Sbjct: 707 ESIPSPSSNSDPVIPLSISDLSPPVQQPSPPEPISPIQQPSLPNSVSTQPSHASPPPEPI 766
Query: 848 LRRSSRITKTPLWLNDFVTNAVTIGXXXXXXXXXXXXXXXXXYPVHTF-PFHVSPLFHPT 1024
LRRS R P+ L D+V N VT YP+ F +H + P
Sbjct: 767 LRRSQRPHHPPMALRDYVCNQVTF--PNHLPPLSSSPQKGTRYPLCNFVSYH---RYSPQ 821
Query: 1025 YIAFLANVSILQEPHSYAEACKSVEWREAMGKELEALEENHTWELTSLPPGKKAIGCRWV 1204
+ +F A VS EP SYAEA W+EAM EL ALE NHTW LTSLP GKK IGCRWV
Sbjct: 822 HRSFTAAVSQDIEPTSYAEAASHSHWQEAMQSELAALEANHTWSLTSLPLGKKPIGCRWV 881
Query: 1205 FKVKMNSDGSVERYKARLVAKGYDQVYGDSYLDSFSPVAKQVTVRMLIALATKKHWMLDQ 1384
+K+K +SDG++ER+KARLVAKGY Q+ G Y D+FSP AK +TVR L+ALA ++W L Q
Sbjct: 882 YKIKRHSDGTIERFKARLVAKGYTQLEGIDYHDTFSPTAKMITVRCLLALAAAQNWSLHQ 941
Query: 1385 LDINNAFLHGYLDEDIYMHPPEGYTAALPGQVCHLKRSLYGLKQASRQWNVEFCDKLQGF 1564
LD+NNAFLHG L E+IYM PP G RQ F +Q
Sbjct: 942 LDVNNAFLHGDLHEEIYMSPPPGLR---------------------RQGENLFSTAIQAA 980
Query: 1565 GFHQSEHDHCLFIKATDSVFMALIVYVDDVLVTASQPDAIAELKTYLHDMFTIKDLGHAK 1744
GF QS+ D+ LF F+AL++YVDD+L+T + +AI LK +LH F IKDLG K
Sbjct: 981 GFVQSKADYSLFTCRKGKSFIALLIYVDDILITGNDANAIVALKQFLHSDFRIKDLGDLK 1040
Query: 1745 YFLGLEIARSSAGTYIHQRKYILDILKDVGLLDCKPASTPFPQGLRLRGEEGVALLEPDV 1924
YFLG+E++RS G I QRKY L+ILKD G L KP + P Q ++L + L +P
Sbjct: 1041 YFLGIEVSRSKKGISISQRKYTLEILKDGGFLGAKPVNFPMEQNIKL-SDSSELLKDPSQ 1099
Query: 1925 YRRLIGRLLYLNMSRPDVTYCVQQLSQFINKPYSSHWDAAIHLLRYLKGCPSKGLFYSSA 2104
YRRL+GRL+YL ++RPD+TY V LS+F++ P H +AA+ +LRYLK P +GLF+ S
Sbjct: 1100 YRRLVGRLIYLTITRPDITYSVHVLSRFMHAPRRPHMEAALRVLRYLKNSPGQGLFFPSQ 1159
Query: 2105 DSFHFEAYCDADWATCLDTRKSLTGYCIFFGGSLVSWKTKKQLTVSKSSAEAEYRSMSQA 2284
+ A+ D+DWA C +R+S TGYC+F G SL+SW+TK+Q TVS SSAEAEYR+M+
Sbjct: 1160 NDLSLRAFSDSDWAGCPISRRSTTGYCVFLGSSLISWRTKRQKTVSLSSAEAEYRAMTGT 1219
Query: 2285 VCELLWLSYIATDLQVSFDLPIPLWCDNQAALYIVANPVFHERTKHVEIDCHVVRNQYKS 2464
CEL WL + DL++ P L+CDN AL+I ANPVFHERT+H+E+DCH +R + +
Sbjct: 1220 CCELSWLRSLLKDLRILHPKPALLYCDNTTALHIAANPVFHERTRHIEMDCHFIREKIQD 1279
Query: 2465 GFVLPQKISTKLQLADMFTKPLGPAVFSAMLSKLGMKDFLS 2587
G + + I++ QLAD+FTKPLG FS M+ KLG+ D S
Sbjct: 1280 GSFVTKHIASTNQLADVFTKPLGKETFSTMIHKLGVLDIHS 1320
Score = 228 bits (580), Expect = 9e-57
Identities = 160/518 (30%), Positives = 265/518 (51%), Gaps = 12/518 (2%)
Frame = +1
Query: 3199 KIGEKLIAWLSVLNTISRDIVDAFLYADSARALWEDIVQRFGESNGPMIYQIQKDIATAA 3378
K + +++W +LN++S+D+ D+ +++ +A+ +WED+ RF +SN P I+QI++ IA
Sbjct: 35 KCNDMILSW--ILNSLSQDLADSVIFSTTAQEVWEDLRDRFSQSNAPRIFQIERGIACLT 92
Query: 3379 QGNLSVVAYFTKLKRLWDEYSCLVPKSICTCGNGKVVADNEMNTRLMQFLMGLNDSYEHV 3558
Q ++V AY+T+LK+LWDE ++C+CG AD + RLMQFLMGLN+SY +
Sbjct: 93 QDQMTVAAYYTRLKKLWDELGS-YNDTVCSCG-----ADYK-RRRLMQFLMGLNESYNAI 145
Query: 3559 RSQILIMEPLPSVNRAYSMILRIERQRTVQVAYPSAQEDVAMVAKIPSGGM---RGRGYS 3729
R QIL+M PLP+V +AYS I++ E+QR++ + + +V + + G+G S
Sbjct: 146 RGQILLMNPLPNVAKAYSSIVQEEKQRSLGATRETTENSAMVVRRAEPMALAVRHGQGSS 205
Query: 3730 PXXXXXXXXXXXXTREEKAQLMCDHCKIPGHEMNECFKLHGYPDWYKTYKEQR-NRSMAN 3906
+ L C +C H C+KL+GYP + + R N +
Sbjct: 206 ----------SRSNPSNRKPLHCSYCDRDHHVRETCWKLNGYPPEHPKHASNRSNHGSTH 255
Query: 3907 MVESMS-TSNAKVVLEEKPKEIVGSDMSGIIQKEIAKYLAAQIPLGNTTAAEAGIDYAHF 4083
+ S S+A V E + V S +G+ +I + L+ G T + + A
Sbjct: 256 FKRNNSHQSSANNVNEHPVMQEVPSMTNGLSDLQIQQILSIMQGKGTTQSTNPKANAA-- 313
Query: 4084 VSHAGTSLREYYALSSFDGVRDGSWILDTGASRHMCANELSMSHIQVLPSSVSVFLPDGS 4263
S +L + L I+D+GA+ H+ ++ + + V +P G
Sbjct: 314 ASGLLQTLLHLHRL-----------IIDSGATDHITSSPTLLVNSSKNTLLPLVGMPSGE 362
Query: 4264 VKHVTHTGNVTISPSLILTDVLLVPSFKYNLLSVSQLIQTSNLKCVFYPTHCLLQDLQTD 4443
+T GN+ ++P++ L +VL VPSFK +L+SVS++ + N F+P C+LQDL T
Sbjct: 363 QAPITSIGNLPLNPAVTLKNVLGVPSFKVDLMSVSRVTKDLNCSVTFFPHWCILQDLTTR 422
Query: 4444 KVVGMG-KAVGRIFIMSLQPIK-TDHFSFAKPVSFPSTCNNVLDD---WHIKLGHASSGV 4608
+G+G + G ++++L K + A S S + V WH +LGH SS
Sbjct: 423 TTIGLGEQRDGLYYLVALASEKPKNQTPSAAATSCRSPSSQVTSSTALWHHRLGHLSS-- 480
Query: 4609 LAHLDFLKSSFDD--KQTLKNCEICHKAKQSRLPFPIS 4716
+ LDF+ + Q+ C++C AKQ RLPF +S
Sbjct: 481 -SRLDFMAKHLLNFPFQSNNACDVCALAKQRRLPFSVS 517
>gb|AAG10817.1|AC011808_5 Putative retroelement polyprotein [Arabidopsis thaliana]
Length = 1413
Score = 719 bits (1857), Expect = 0.0
Identities = 374/839 (44%), Positives = 533/839 (63%), Gaps = 8/839 (0%)
Frame = +2
Query: 23 FDLIHVDVWGPYASHSFCRTPYFLTVVDDHSRATWIYLMSHKTLVPKMLSTFLHMVHTQF 202
FDL+H+DVWGP++ + YFLT+VDDH+R TW+YLM +K+ V + F+ MV TQ+
Sbjct: 590 FDLLHIDVWGPFSEPTQEGYHYFLTIVDDHTRVTWVYLMKYKSDVLTIFPDFITMVETQY 649
Query: 203 NKRVKEIRSDNGTEFVSGECQSLFHTHGVIHQKACTYTPQQNGIVERKHRHLFDIARALM 382
+ +VK +RSDN E + + L+ G++ +C TP+QN +VERKH+H+ ++ARAL+
Sbjct: 650 DTKVKAVRSDNAPEL---KFEELYRRKGIVAYHSCPETPEQNSVVERKHQHILNVARALL 706
Query: 383 FQSHLPSHFWVFSVLTAAYIINRLPSKLLHWKSPCEVLYGTKPDYSRMKPFGCLSFASNL 562
FQS +P +W +LTA +IINR PS ++ K+ E+L PDY+ +K FGCL +AS
Sbjct: 707 FQSQIPLSYWGDCILTAVFIINRTPSPVISNKTLFEMLTKKVPDYTHLKSFGCLCYASTS 766
Query: 563 TPHKDKFAPRAHKCVFLGYESGTKGYRLYNLDTNKIQISRDVHFVETQFPYQXXXXXXXX 742
+ KF RA C FLGY SG KGY+L +L+++ I ISR+V F E FP++
Sbjct: 767 PKQRHKFEDRARTCAFLGYPSGYKGYKLLDLESHTIFISRNVVFYEDLFPFKTKPAENEE 826
Query: 743 XXXX-PLFNIPITES--SHPDPVSPTLPSPQPVPSVPILRRSSRITKTPLWLNDFVTNAV 913
P + +S S P PV T S +VP +++SR+++ P +L D+ N+V
Sbjct: 827 SSVFFPHIYVDRNDSHPSQPLPVQETSAS-----NVPAEKQNSRVSRPPAYLKDYHCNSV 881
Query: 914 TIGXXXXXXXXXXXXXXXXXYPVHTFPFHVSPLFHPTYIAFLANVSILQEPHSYAEACKS 1093
T +P+ S L P Y+ F+ V+ + EPH+YA+A +
Sbjct: 882 TSSTD---------------HPISEV-LSYSSLSDP-YMIFINAVNKIPEPHTYAQARQI 924
Query: 1094 VEWREAMGKELEALEENHTWELTSLPPGKKAIGCRWVFKVKMNSDGSVERYKARLVAKGY 1273
EW +AMG E+ ALE+N TW + SLP GKKA+GC+WV+K+K+N+DGS+ERYKARLVAKGY
Sbjct: 925 KEWCDAMGMEITALEDNGTWVVCSLPVGKKAVGCKWVYKIKLNADGSLERYKARLVAKGY 984
Query: 1274 DQVYGDSYLDSFSPVAKQVTVRMLIALATKKHWMLDQLDINNAFLHGYLDEDIYMHPPEG 1453
Q G Y+D+FSPVAK TV++LIA+A K W L QLDI+NAFL+G LDE+IYM P G
Sbjct: 985 TQTEGLDYVDTFSPVAKLTTVKLLIAVAAAKGWSLSQLDISNAFLNGSLDEEIYMTLPPG 1044
Query: 1454 YTAAL-----PGQVCHLKRSLYGLKQASRQWNVEFCDKLQGFGFHQSEHDHCLFIKATDS 1618
Y+ P VC LK+SLYGLKQASRQW ++F + L+ GF QS DH LF + + +
Sbjct: 1045 YSPRQGDSFPPNAVCRLKKSLYGLKQASRQWYLKFSESLKALGFTQSSGDHTLFTRKSKN 1104
Query: 1619 VFMALIVYVDDVLVTASQPDAIAELKTYLHDMFTIKDLGHAKYFLGLEIARSSAGTYIHQ 1798
+MA++VYVDD+++ +S L+ L ++DLG +YFLGLEIAR++ G I Q
Sbjct: 1105 SYMAVLVYVDDIIIASSCDRETELLRDALQRSSKLRDLGTLRYFLGLEIARNTDGISICQ 1164
Query: 1799 RKYILDILKDVGLLDCKPASTPFPQGLRLRGEEGVALLEPDVYRRLIGRLLYLNMSRPDV 1978
RKY L++L + GLL CK +S P +L E+G + + + YR+L+G+L+YL +RPD+
Sbjct: 1165 RKYTLELLAETGLLGCKSSSVPMEPNQKLSQEDGELIDDAEHYRKLVGKLMYLTFTRPDI 1224
Query: 1979 TYCVQQLSQFINKPYSSHWDAAIHLLRYLKGCPSKGLFYSSADSFHFEAYCDADWATCLD 2158
TY V +L QF + P H A ++ YLKG +GLFYS+ + D+D+++C D
Sbjct: 1225 TYAVHRLCQFTSAPRVPHLKAVYKIIYYLKGTVGQGLFYSANVDLKLSGFADSDFSSCSD 1284
Query: 2159 TRKSLTGYCIFFGGSLVSWKTKKQLTVSKSSAEAEYRSMSQAVCELLWLSYIATDLQVSF 2338
+RK TGYC+F G SLV+WK+KKQ +S SSAEAEY++MS AV E++WL ++ DL +
Sbjct: 1285 SRKLTTGYCMFLGTSLVAWKSKKQEVISMSSAEAEYKAMSMAVREMMWLRFLLEDLWIDV 1344
Query: 2339 DLPIPLWCDNQAALYIVANPVFHERTKHVEIDCHVVRNQYKSGFVLPQKISTKLQLADM 2515
L+CDN AA++I NPVFHERTKH+E D H +R + G + + T+ QLAD+
Sbjct: 1345 SEASVLYCDNTAAIHIANNPVFHERTKHIERDYHHIREKIILGLIRTLHVRTENQLADI 1403
Score = 161 bits (408), Expect(2) = 1e-47
Identities = 122/445 (27%), Positives = 206/445 (46%), Gaps = 37/445 (8%)
Frame = +1
Query: 3232 VLNTISRDIVDAFLYADSARALWEDIVQRFGESNGPMIYQIQKDIATAAQGNLSVVAYFT 3411
+LN+++R+I + L D A +W D+ RF +N P +Q+ + I QG++++ Y+T
Sbjct: 124 ILNSVNREIYGSILSFDDAAQIWNDLHNRFHMTNLPRTFQLVQQIQDLRQGSMNLSTYYT 183
Query: 3412 KLKRLWDEYS---CLVPKSIC---TCGNGKVVADNEMNTRLMQFLMGLNDSYEHVRSQIL 3573
LK L D VP C TC + N R+++FL GLN+ Y +R QI+
Sbjct: 184 TLKTLRDNLDGAEASVPCHCCKKSTCESQIFAKSNVNRGRIIKFLAGLNEKYSIIRGQII 243
Query: 3574 IMEPLPSVNRAYSMILRIERQR-----TVQVAYPSAQEDV-----AMVAKIPSGGMRGRG 3723
+ +PLP + Y+++ + + QR A+ ++DV A + +P GM G
Sbjct: 244 MKKPLPDLAEVYNILDQDDSQRQFSNNVASAAFQVTKDDVQPGALASSSNMPQPGMLGA- 302
Query: 3724 YSPXXXXXXXXXXXXTREEKAQLMCDHCKIPGHEMNECFKLHGYP-------DWYKTYKE 3882
+++ + +C H GH C+KLHGYP +Y+ +
Sbjct: 303 ---------------VQKKDKKSICSHYGYTGHTSERCYKLHGYPVGWKKGKSFYEKIAQ 347
Query: 3883 QRNRSMANMVESMSTSNAKVVLEEKP---KEIVGSDMSGIIQKEIAKYLAAQIPLGNTTA 4053
S A S T+ + P + ++G+ IQ IA + ++Q+ +
Sbjct: 348 ASQSSQAPKPNSAVTAQVTGNSQNTPAGLESLIGNMSKDQIQNLIALF-SSQLQPASPVL 406
Query: 4054 AEAGIDYAHFVSHAGTSLREYYALSSFDGV--------RDGSWILDTGASRHMC-ANELS 4206
A + +H +G + + SF G+ G+WI+D+GA+ H+C ++
Sbjct: 407 NTAPMSTSHNNDPSGITFSS--STFSFIGILTVSETEMTHGTWIVDSGATHHVCHVKDMF 464
Query: 4207 MSHIQVLPSSVS--VFLPDGSVKHVTHTGNVTISPSLILTDVLLVPSFKYNLLSVSQLIQ 4380
++ L +SV V LP G+ V GN+ ++ LIL +VL +P F+ NLLSVS L
Sbjct: 465 LN----LDTSVQHHVNLPTGTTIRVGGVGNIAVNADLILKNVLYIPEFRLNLLSVSALTT 520
Query: 4381 TSNLKCVFYPTHCLLQDLQTDKVVG 4455
+ VF PT C++ DL +G
Sbjct: 521 DIGARVVFDPTCCVVHDLTKGSTIG 545
Score = 60.5 bits (145), Expect(2) = 1e-47
Identities = 30/70 (42%), Positives = 41/70 (58%)
Frame = +3
Query: 3024 PYQLHGSDHPGLILVSNILTGNNFLSWSRSMVIALSAKAKLGFINGKIEAPKEDSPKYEN 3203
P LH +DHPG+ +VS L G N+ WS +M IAL AK K+ FI+G P+E +
Sbjct: 53 PLFLHNADHPGISIVSVQLDGANYNQWSSAMKIALDAKNKIAFIDGSCPRPEEGNHLLRI 112
Query: 3204 WRKVDCMVVS 3233
W + + MV S
Sbjct: 113 WSRCNSMVKS 122