BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia27_contig00028122
         (959 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP48058.1| Retrovirus-related Pol polyprotein from transposo...   290   4e-91
gb|KYP64927.1| Retrovirus-related Pol polyprotein from transposo...   287   6e-91
gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subc...   298   1e-90
gb|KYP62479.1| Retrovirus-related Pol polyprotein from transposo...   278   2e-89
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]   300   4e-89
emb|CAN83839.1| hypothetical protein VITISV_023230 [Vitis vinifera]   290   4e-89
gb|KYP50444.1| Retrovirus-related Pol polyprotein from transposo...   298   4e-89
dbj|BAH94406.1| Os08g0544300 [Oryza sativa Japonica Group]            292   4e-89
gb|ACY72569.1| unknown [Oryza sativa Japonica Group]                  298   1e-88
dbj|BAA78425.1| polyprotein [Arabidopsis thaliana] gi|338746551|...   298   1e-88
dbj|BAK41507.1| polyprotein [Arabidopsis thaliana]                    298   1e-88
gb|KYP32697.1| Retrovirus-related Pol polyprotein from transposo...   275   2e-88
gb|AAK62788.1|AC027036_9 polyprotein, putative [Arabidopsis thal...   298   2e-88
gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-...   298   2e-88
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc...   297   3e-88
gb|KYP70746.1| Retrovirus-related Pol polyprotein from transposo...   275   3e-88
gb|KYP34165.1| Copia protein [Cajanus cajan]                          282   5e-88
dbj|BAA78423.1| polyprotein [Arabidopsis thaliana]                    296   6e-88
dbj|BAK41511.1| polyprotein [Arabidopsis thaliana]                    296   6e-88
gb|AAK62793.1|AC027036_14 polyprotein, putative [Arabidopsis tha...   296   6e-88

>gb|KYP48058.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 539

 Score =  290 bits (742), Expect = 4e-91
 Identities = 149/300 (49%), Positives = 200/300 (66%), Gaps = 2/300 (0%)
 Frame = +3

Query: 57  MITRARAGIHKPKIFTALTSVSEPKSISEALSDPQWKSAMQAEFNALISNHTWDLVP-PP 233
           M TR+++GIHKPK  + L + SEPK++ +AL DP+W  AM+ E++AL+ N+TW LV  PP
Sbjct: 1   MQTRSKSGIHKPKYPSVLLAQSEPKNVKQALKDPKWLEAMKQEYSALLKNNTWTLVQLPP 60

Query: 234 HMQIVDHKWVFRVKYHSDGTVDRLKARLVAKGFQQLPGIDYFETFSPVVKPITIRLMFSL 413
               +  KWVFR+K +SDG+V+R KARLVAKGF Q PG D+ ETFSP++KP+TIRL+ +L
Sbjct: 61  DRNAIGCKWVFRIKENSDGSVNRYKARLVAKGFLQQPGFDFNETFSPIIKPVTIRLILTL 120

Query: 414 AAARGWKIEQVDINNAFLNGDINETVYMSQPVGFVYSLRPQHVCKLTKALYGLKQAPKAW 593
           A +  W I Q+D+NNAFLNG +NETVYM QP GF        VCKL KALYGLKQAP+ W
Sbjct: 121 AISNHWDIHQLDVNNAFLNGSLNETVYMQQPPGFEVP-DSTLVCKLNKALYGLKQAPRQW 179

Query: 594 NDKLKAFLMSIGFKSSMSDPSLFFLKTGPHXXXXXXXXXXXXXTGDDHSSVLSIIQQLNK 773
            ++L+  L+  GFK+S  DPSLF      +             TG+       +I QLN 
Sbjct: 180 FERLQYTLLQFGFKASKCDPSLFTYHMQSNIVYLLVYVDDIIITGNSFQFTQQLIDQLNS 239

Query: 774 TFALKHLGEVHYFLGIETHKLPAG-ILLNQTKYATDILKKTNMVDSKPCDSPYNAAQKLS 950
            F+LK LG++ YFLGIE   L  G +LL Q+KY  D+L++TNM+++    SP  ++ KLS
Sbjct: 240 IFSLKQLGKLDYFLGIEVRHLQNGSVLLTQSKYIRDLLQRTNMLEANAISSPMVSSCKLS 299


>gb|KYP64927.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 470

 Score =  287 bits (735), Expect = 6e-91
 Identities = 148/300 (49%), Positives = 199/300 (66%), Gaps = 2/300 (0%)
 Frame = +3

Query: 57  MITRARAGIHKPKIFTALTSVSEPKSISEALSDPQWKSAMQAEFNALISNHTWDLVP-PP 233
           M TR+++GIHKPK  + L + SEPK++ +AL DP+W  AM+ E++AL+ N+TW LV  PP
Sbjct: 1   MQTRSKSGIHKPKYPSVLLAQSEPKNVKQALKDPKWLEAMKKEYSALLKNNTWTLVQLPP 60

Query: 234 HMQIVDHKWVFRVKYHSDGTVDRLKARLVAKGFQQLPGIDYFETFSPVVKPITIRLMFSL 413
               +  KWVFR+K +SDG+V+R KARLVAKGF Q PG D+ ETFSPV+KP+TIRL+ +L
Sbjct: 61  DRNAIGCKWVFRIKENSDGSVNRYKARLVAKGFLQQPGFDFNETFSPVIKPVTIRLILTL 120

Query: 414 AAARGWKIEQVDINNAFLNGDINETVYMSQPVGFVYSLRPQHVCKLTKALYGLKQAPKAW 593
           A +  W I Q+D+NNAFLNG +NETVYM QP GF        VCK  KALYGLKQAP+ W
Sbjct: 121 AISNHWDIHQLDVNNAFLNGSLNETVYMQQPPGFEVP-DSTLVCKSNKALYGLKQAPRQW 179

Query: 594 NDKLKAFLMSIGFKSSMSDPSLFFLKTGPHXXXXXXXXXXXXXTGDDHSSVLSIIQQLNK 773
            ++L+  L+  GFK++  DPSLF      +             TG+       +I QLN 
Sbjct: 180 FERLQYTLLQFGFKANKCDPSLFTYHVQSNIVYLLVYVDDIIITGNSSQFTQQLIDQLNS 239

Query: 774 TFALKHLGEVHYFLGIETHKLPAG-ILLNQTKYATDILKKTNMVDSKPCDSPYNAAQKLS 950
            F+LK LG++ YFLGIE   L  G +LL Q+KY  D+L++TNM+++    SP  ++ KLS
Sbjct: 240 IFSLKQLGKLDYFLGIEVRHLQNGSVLLTQSKYIRDLLQRTNMLEANAISSPMVSSCKLS 299


>gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 900

 Score =  298 bits (762), Expect = 1e-90
 Identities = 147/306 (48%), Positives = 200/306 (65%), Gaps = 8/306 (2%)
 Frame = +3

Query: 60   ITRARAGIHKPKIFT-------ALTSVSEPKSISEALSDPQWKSAMQAEFNALISNHTWD 218
            +TR++ G+H+PK +T        LT   EP S+ EALS   WK AM  EF+AL+ N TW 
Sbjct: 355  VTRSQHGVHRPKKYTDGTVRYGCLTETGEPSSLQEALSSANWKQAMDKEFSALLHNKTWH 414

Query: 219  LVPPPH-MQIVDHKWVFRVKYHSDGTVDRLKARLVAKGFQQLPGIDYFETFSPVVKPITI 395
            LVPP     I+D KWV+++K  +DGT+DR KARLVAKGF+Q  GIDY +TFSPVVK  TI
Sbjct: 415  LVPPVKGKNIIDSKWVYKIKKKADGTIDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATI 474

Query: 396  RLMFSLAAARGWKIEQVDINNAFLNGDINETVYMSQPVGFVYSLRPQHVCKLTKALYGLK 575
            RL+ S+A ++GW + Q+D+ NAFL+G ++E VYM QP GF  + +P  +CKL KALYGLK
Sbjct: 475  RLVLSIAMSQGWSLRQLDVQNAFLHGYLDEEVYMRQPPGFEDARQPHFLCKLDKALYGLK 534

Query: 576  QAPKAWNDKLKAFLMSIGFKSSMSDPSLFFLKTGPHXXXXXXXXXXXXXTGDDHSSVLSI 755
            QAP+AW  +L   L  +GF SS +D SLFF   G H                   +V ++
Sbjct: 535  QAPRAWYSRLSKKLQELGFSSSKADTSLFFYNKGHHKMFVLVYVDDIIVASSSSPAVNAL 594

Query: 756  IQQLNKTFALKHLGEVHYFLGIETHKLPAGILLNQTKYATDILKKTNMVDSKPCDSPYNA 935
            ++ L K FALK LG++HYFLGIE  + P  +LL+Q +Y T++L++ NM   KP  +P + 
Sbjct: 595  LKDLEKDFALKDLGDLHYFLGIEVKRTPQTLLLSQERYTTELLERVNMTSCKPVSTPLST 654

Query: 936  AQKLSL 953
            A+KLS+
Sbjct: 655  AEKLSV 660


>gb|KYP62479.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 293

 Score =  278 bits (710), Expect = 2e-89
 Identities = 147/293 (50%), Positives = 193/293 (65%), Gaps = 3/293 (1%)
 Frame = +3

Query: 57  MITRARAGIHKPKIF-TALTSVSEPKSISEALSDPQWKSAMQAEFNALISNHTWDLVP-P 230
           M TR+++GI +PK+  T L + +EP S+ +ALS P WK+AM  E++ALI N TW LVP P
Sbjct: 1   MQTRSKSGIVRPKLHPTLLLTTTEPTSLKQALSSPSWKTAMSLEYDALIKNQTWTLVPLP 60

Query: 231 PHMQIVDHKWVFRVKYHSDGTVDRLKARLVAKGFQQLPGIDYFETFSPVVKPITIRLMFS 410
            +  +V  KWV+R+K + DGT+++ KARLVAKGF Q  G DY ETFSPV+KPITIR++ +
Sbjct: 61  SNRTVVGCKWVYRIKENQDGTINKYKARLVAKGFHQKFGCDYSETFSPVIKPITIRVILT 120

Query: 411 LAAARGWKIEQVDINNAFLNGDINETVYMSQPVGFVYSLRPQHVCKLTKALYGLKQAPKA 590
           L     W I+QVDINNAFLNG + E VYM QP GF  S +   VCKL KA+YGLKQAP+A
Sbjct: 121 LDVTYHWPIKQVDINNAFLNGFLEEDVYMMQPPGFEVSDKTL-VCKLNKAIYGLKQAPRA 179

Query: 591 WNDKLKAFLMSIGFKSSMSDPSLFFLKTGPHXXXXXXXXXXXXXTGDDHSSVLSIIQQLN 770
           W D+L   L+  GF  S  DPSL   K                 TG+ HS V S I +LN
Sbjct: 180 WYDRLTKTLLGFGFVQSRCDPSLLIYKQSQVCIYMLIYVDDIIVTGNSHSLVQSFISKLN 239

Query: 771 KTFALKHLGEVHYFLGIETHKLPAG-ILLNQTKYATDILKKTNMVDSKPCDSP 926
             FALK LG++ YFLGIE  +  +G ++LNQ KY  D+L++T+M ++K   +P
Sbjct: 240 GVFALKQLGDLDYFLGIEVKRTNSGSVILNQAKYIRDLLQRTDMYNAKGISTP 292


>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
          Length = 1455

 Score =  300 bits (768), Expect = 4e-89
 Identities = 155/302 (51%), Positives = 200/302 (66%), Gaps = 1/302 (0%)
 Frame = +3

Query: 57   MITRARAGIHKPKIFTALTSVSEPKSISEALSDPQWKSAMQAEFNALISNHTWDLVP-PP 233
            MITRA++GI KPKIF A  ++ EP S+S AL   +WK AM AE++AL  N+TW LVP P 
Sbjct: 916  MITRAKSGIVKPKIFIA--AIREPSSVSAALQQDEWKKAMVAEYDALQRNNTWSLVPLPA 973

Query: 234  HMQIVDHKWVFRVKYHSDGTVDRLKARLVAKGFQQLPGIDYFETFSPVVKPITIRLMFSL 413
              Q +  KWV++ K + DGTV + KARLVAKGF Q  G D+ ETFSPVVKP T+R++F++
Sbjct: 974  GRQAIGCKWVYKTKENPDGTVQKYKARLVAKGFHQQAGFDFTETFSPVVKPSTVRVVFTI 1033

Query: 414  AAARGWKIEQVDINNAFLNGDINETVYMSQPVGFVYSLRPQHVCKLTKALYGLKQAPKAW 593
            A +R W I+Q+D+NNAFLNGD+ E V+M QP GF+    P  VC+L KALYGLKQAP+AW
Sbjct: 1034 ALSRNWAIKQLDVNNAFLNGDLQEEVFMQQPQGFIDEQNPNLVCRLHKALYGLKQAPRAW 1093

Query: 594  NDKLKAFLMSIGFKSSMSDPSLFFLKTGPHXXXXXXXXXXXXXTGDDHSSVLSIIQQLNK 773
             +KL   L+S GF S+ SD SLF   T  H              G D +++ S+I QLN 
Sbjct: 1094 FEKLHRALLSFGFVSAKSDQSLFLRFTPNHITYVLVYVDDILVIGSDTAAITSLIAQLNS 1153

Query: 774  TFALKHLGEVHYFLGIETHKLPAGILLNQTKYATDILKKTNMVDSKPCDSPYNAAQKLSL 953
             F+LK LGEVHYFLGI+      G+ L+QTKY  D+L+KT MV  KP  +P     KL +
Sbjct: 1154 EFSLKDLGEVHYFLGIQVSHTNNGLHLSQTKYIRDLLQKTKMVHCKPARTPLPTGLKLRV 1213

Query: 954  AN 959
             +
Sbjct: 1214 GD 1215


>emb|CAN83839.1| hypothetical protein VITISV_023230 [Vitis vinifera]
          Length = 731

 Score =  290 bits (742), Expect = 4e-89
 Identities = 144/306 (47%), Positives = 203/306 (66%), Gaps = 8/306 (2%)
 Frame = +3

Query: 57   MITRARAGIHKPKIFTALT-------SVSEPKSISEALSDPQWKSAMQAEFNALISNHTW 215
            MITRA+AGI KPK++ AL           EP  + + L+DP WK AM+ E+ AL+ N TW
Sbjct: 247  MITRAKAGIFKPKVYAALKHPLSFSLGSIEPMCVKQVLADPNWKIAMKEEYKALMRNDTW 306

Query: 216  DLVP-PPHMQIVDHKWVFRVKYHSDGTVDRLKARLVAKGFQQLPGIDYFETFSPVVKPIT 392
            DLVP  P   +V +KWVF++K+H D T+++ KA LVAKGF Q PG+D+ ET+SP +K  T
Sbjct: 307  DLVPYQPQYNVVGNKWVFKLKFHLDDTLNKHKASLVAKGFHQTPGVDFSETYSPAIKLAT 366

Query: 393  IRLMFSLAAARGWKIEQVDINNAFLNGDINETVYMSQPVGFVYSLRPQHVCKLTKALYGL 572
            IR++ +LA A+GW+I Q+DINNAFLNG + E V+MS+P  F++  +P H+CKL KALYGL
Sbjct: 367  IRVVLTLAIAQGWEIRQLDINNAFLNGYLQENVFMSEPKDFIHPTKPHHICKLRKALYGL 426

Query: 573  KQAPKAWNDKLKAFLMSIGFKSSMSDPSLFFLKTGPHXXXXXXXXXXXXXTGDDHSSVLS 752
            KQAP+AW D+LK  L+  GF+ S S+ SLF  K                 TG++ +++L 
Sbjct: 427  KQAPRAWFDRLKDALLQWGFQDSKSNASLFLYKIKGIKLMPLVYVDNILITGNNSTTILD 486

Query: 753  IIQQLNKTFALKHLGEVHYFLGIETHKLPAGILLNQTKYATDILKKTNMVDSKPCDSPYN 932
            ++  LNK+F LK LG +HYFLGI+  +    + L Q+KY  ++L+KTNM  +KP  +P  
Sbjct: 487  LVHDLNKSFLLKDLGSLHYFLGIKAFQDETCLNLTQSKYIANLLQKTNMAVAKPLPTPTI 546

Query: 933  AAQKLS 950
            + + LS
Sbjct: 547  SRKVLS 552


>gb|KYP50444.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1165

 Score =  298 bits (762), Expect = 4e-89
 Identities = 153/304 (50%), Positives = 198/304 (65%), Gaps = 6/304 (1%)
 Frame = +3

Query: 57   MITRARAGIHKPK-----IFTALTSVSEPKSISEALSDPQWKSAMQAEFNALISNHTWDL 221
            M TR++ GI KPK              EP++  EAL +P+WK AM AEF AL+ N TW L
Sbjct: 739  MTTRSKMGIIKPKKPYVGAVEKTLEEQEPETTYEALENPEWKKAMIAEFKALMMNKTWTL 798

Query: 222  VP-PPHMQIVDHKWVFRVKYHSDGTVDRLKARLVAKGFQQLPGIDYFETFSPVVKPITIR 398
            VP      I+D KWVF+ KY +DGT++R KARLVAKGFQQ  G+DY ETFSPV+K IT+R
Sbjct: 799  VPYQGQKNIIDCKWVFKTKYKADGTIERRKARLVAKGFQQTLGLDYDETFSPVIKAITVR 858

Query: 399  LMFSLAAARGWKIEQVDINNAFLNGDINETVYMSQPVGFVYSLRPQHVCKLTKALYGLKQ 578
            ++ S+A    W+I Q+DINNAFLNG++ ETV+M QP GF+   RPQH+CKLTKA+YGLKQ
Sbjct: 859  IILSIAVHFNWEIRQMDINNAFLNGELKETVFMRQPEGFLDKSRPQHICKLTKAIYGLKQ 918

Query: 579  APKAWNDKLKAFLMSIGFKSSMSDPSLFFLKTGPHXXXXXXXXXXXXXTGDDHSSVLSII 758
            AP++W D+L+  L+  GFK++ SD SLF L +  H             TG   S + S I
Sbjct: 919  APRSWYDRLRNALLKWGFKNTRSDSSLFVLMSKAHITFLLIYVDDIIITGSSSSFLSSFI 978

Query: 759  QQLNKTFALKHLGEVHYFLGIETHKLPAGILLNQTKYATDILKKTNMVDSKPCDSPYNAA 938
            +QLN  FALK LG +HYFLG+E  +  +G+ L QTKY  D+LKK N+     C +P    
Sbjct: 979  KQLNIMFALKDLGSLHYFLGVEACRDASGLYLKQTKYVLDLLKKFNLEHVSSCPTPMVTG 1038

Query: 939  QKLS 950
            + LS
Sbjct: 1039 RSLS 1042


>dbj|BAH94406.1| Os08g0544300 [Oryza sativa Japonica Group]
          Length = 821

 Score =  292 bits (747), Expect = 4e-89
 Identities = 146/305 (47%), Positives = 201/305 (65%), Gaps = 8/305 (2%)
 Frame = +3

Query: 63   TRARAGIHKPKIFTA-------LTSVSEPKSISEALSDPQWKSAMQAEFNALISNHTWDL 221
            TR ++GI K K++T         TS  EP+S+ EA+++  WK AM AE+ ALI N TW L
Sbjct: 279  TRLQSGIRKEKVYTDGTVKWLNFTSSGEPQSLEEAVNNKHWKEAMDAEYMALIENKTWHL 338

Query: 222  VPPPH-MQIVDHKWVFRVKYHSDGTVDRLKARLVAKGFQQLPGIDYFETFSPVVKPITIR 398
            VPP     ++D KWV++VK  +DG++DR KARLVAKGF+Q  GIDY +TFSPVVK  TIR
Sbjct: 339  VPPQKGRNVIDCKWVYKVKRKADGSLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIR 398

Query: 399  LMFSLAAARGWKIEQVDINNAFLNGDINETVYMSQPVGFVYSLRPQHVCKLTKALYGLKQ 578
            ++ SLA +RGW + Q+D+ NAFL+G + E VYM QP G+     P +VCKL KALYGLKQ
Sbjct: 399  IVLSLAVSRGWSLRQLDVKNAFLHGVLEEEVYMEQPPGYEKKSMPNYVCKLDKALYGLKQ 458

Query: 579  APKAWNDKLKAFLMSIGFKSSMSDPSLFFLKTGPHXXXXXXXXXXXXXTGDDHSSVLSII 758
            AP+AW  +L   L  +GF  S +D SLFF K G                     +  +++
Sbjct: 459  APRAWYSRLSTKLSELGFVPSKADTSLFFYKKGQVSIFLLIYVDDIIMASSVPDATSTLL 518

Query: 759  QQLNKTFALKHLGEVHYFLGIETHKLPAGILLNQTKYATDILKKTNMVDSKPCDSPYNAA 938
            Q+L+K FALK LG++HYFLGIE HK+  G++L+Q KYA+D+L++  M + KP  +P + +
Sbjct: 519  QELSKDFALKDLGDLHYFLGIEVHKVKDGLMLSQEKYASDLLRRVGMYECKPVSTPLSTS 578

Query: 939  QKLSL 953
            +KLS+
Sbjct: 579  EKLSV 583


>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
          Length = 1436

 Score =  298 bits (764), Expect = 1e-88
 Identities = 150/305 (49%), Positives = 203/305 (66%), Gaps = 8/305 (2%)
 Frame = +3

Query: 63   TRARAGIHKPKIFT-------ALTSVSEPKSISEALSDPQWKSAMQAEFNALISNHTWDL 221
            TR R+GI K K++T         TS  EP++  EAL D  WK+AM+AE++ALI N TW L
Sbjct: 900  TRLRSGIRKEKVYTDGTVKYGCFTSTGEPQNDKEALGDKNWKAAMEAEYDALIKNDTWHL 959

Query: 222  VPPPHMQ-IVDHKWVFRVKYHSDGTVDRLKARLVAKGFQQLPGIDYFETFSPVVKPITIR 398
            VP    Q ++  KWV+++K  +DGT+DR KARLVAKGF+Q  GIDY +TFSPVVK  TIR
Sbjct: 960  VPYEKGQNVIGCKWVYKIKRKADGTLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIR 1019

Query: 399  LMFSLAAARGWKIEQVDINNAFLNGDINETVYMSQPVGFVYSLRPQHVCKLTKALYGLKQ 578
            ++ S+A +RGW + Q+D+ NAFL+G + E VYM QP GF    +P +VCKL KALYGLKQ
Sbjct: 1020 IILSIAVSRGWSLRQLDVQNAFLHGFLEEEVYMQQPPGFESFSKPNYVCKLDKALYGLKQ 1079

Query: 579  APKAWNDKLKAFLMSIGFKSSMSDPSLFFLKTGPHXXXXXXXXXXXXXTGDDHSSVLSII 758
            AP+AW  +L   L+ +GF++S +D SLFFL  G                     +  +++
Sbjct: 1080 APRAWYSRLSKKLVELGFEASKADTSLFFLNKGGIIMFVLVYVDDIIIASSTEKATTALL 1139

Query: 759  QQLNKTFALKHLGEVHYFLGIETHKLPAGILLNQTKYATDILKKTNMVDSKPCDSPYNAA 938
            + LNK FALK LG++HYFLGIE  K+P GI+L Q KYA D+LK+ NM + KP  +P + +
Sbjct: 1140 KDLNKEFALKDLGDLHYFLGIEVTKVPNGIVLTQEKYANDLLKRVNMSNCKPVSTPLSVS 1199

Query: 939  QKLSL 953
            +KL+L
Sbjct: 1200 EKLTL 1204


>dbj|BAA78425.1| polyprotein [Arabidopsis thaliana] gi|338746551|dbj|BAK41505.1|
            polyprotein [Arabidopsis thaliana]
            gi|338746553|dbj|BAK41506.1| polyprotein [Arabidopsis
            thaliana] gi|338746557|dbj|BAK41508.1| polyprotein
            [Arabidopsis thaliana] gi|338746559|dbj|BAK41509.1|
            polyprotein [Arabidopsis thaliana]
          Length = 1447

 Score =  298 bits (764), Expect = 1e-88
 Identities = 148/305 (48%), Positives = 209/305 (68%), Gaps = 6/305 (1%)
 Frame = +3

Query: 57   MITRARAGIHKPKI----FTALTSVSEPKSISEALSDPQWKSAMQAEFNALISNHTWDLV 224
            M TRA+AGI KP +      +L + SEP++  +AL D +W++AM +E NA I NHTWDLV
Sbjct: 910  MGTRAKAGIIKPNLKYSLAVSLAAESEPRTAIQALKDERWRNAMGSEINAQIGNHTWDLV 969

Query: 225  PPP--HMQIVDHKWVFRVKYHSDGTVDRLKARLVAKGFQQLPGIDYFETFSPVVKPITIR 398
            PPP  H+ IV  +W+F  KY+SDG+++R KARLVAKG+ Q PG+DY ETFSPV+K  +IR
Sbjct: 970  PPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYVETFSPVIKSTSIR 1029

Query: 399  LMFSLAAARGWKIEQVDINNAFLNGDINETVYMSQPVGFVYSLRPQHVCKLTKALYGLKQ 578
            ++  +A  R W I Q+D+NNAFL G + + VYMSQP GF+   RP +VCKL KALYGLKQ
Sbjct: 1030 IVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQ 1089

Query: 579  APKAWNDKLKAFLMSIGFKSSMSDPSLFFLKTGPHXXXXXXXXXXXXXTGDDHSSVLSII 758
            AP+AW  +L+ +L++IGF +S+SD SLF L+ G               TG+D + + + +
Sbjct: 1090 APRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTL 1149

Query: 759  QQLNKTFALKHLGEVHYFLGIETHKLPAGILLNQTKYATDILKKTNMVDSKPCDSPYNAA 938
              L++ F++K   E+HYFLGIE  ++P G+ L+Q +Y  D+L +TNM+ +KP  +P   +
Sbjct: 1150 DNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPS 1209

Query: 939  QKLSL 953
             KLSL
Sbjct: 1210 PKLSL 1214


>dbj|BAK41507.1| polyprotein [Arabidopsis thaliana]
          Length = 1447

 Score =  298 bits (764), Expect = 1e-88
 Identities = 148/305 (48%), Positives = 209/305 (68%), Gaps = 6/305 (1%)
 Frame = +3

Query: 57   MITRARAGIHKPKI----FTALTSVSEPKSISEALSDPQWKSAMQAEFNALISNHTWDLV 224
            M TRA+AGI KP +      +L + SEP++  +AL D +W++AM +E NA I NHTWDLV
Sbjct: 910  MGTRAKAGIIKPNLKYSLAVSLAAESEPRTAIQALKDERWRNAMGSEINAQIGNHTWDLV 969

Query: 225  PPP--HMQIVDHKWVFRVKYHSDGTVDRLKARLVAKGFQQLPGIDYFETFSPVVKPITIR 398
            PPP  H+ IV  +W+F  KY+SDG+++R KARLVAKG+ Q PG+DY ETFSPV+K  +IR
Sbjct: 970  PPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYVETFSPVIKSTSIR 1029

Query: 399  LMFSLAAARGWKIEQVDINNAFLNGDINETVYMSQPVGFVYSLRPQHVCKLTKALYGLKQ 578
            ++  +A  R W I Q+D+NNAFL G + + VYMSQP GF+   RP +VCKL KALYGLKQ
Sbjct: 1030 IVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQ 1089

Query: 579  APKAWNDKLKAFLMSIGFKSSMSDPSLFFLKTGPHXXXXXXXXXXXXXTGDDHSSVLSII 758
            AP+AW  +L+ +L++IGF +S+SD SLF L+ G               TG+D + + + +
Sbjct: 1090 APRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTL 1149

Query: 759  QQLNKTFALKHLGEVHYFLGIETHKLPAGILLNQTKYATDILKKTNMVDSKPCDSPYNAA 938
              L++ F++K   E+HYFLGIE  ++P G+ L+Q +Y  D+L +TNM+ +KP  +P   +
Sbjct: 1150 DNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPS 1209

Query: 939  QKLSL 953
             KLSL
Sbjct: 1210 PKLSL 1214


>gb|KYP32697.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 303

 Score =  275 bits (704), Expect = 2e-88
 Identities = 145/300 (48%), Positives = 198/300 (66%), Gaps = 2/300 (0%)
 Frame = +3

Query: 57  MITRARAGIHKPKIFTALTSVSEPKSISEALSDPQWKSAMQAEFNALISNHTWDLVP-PP 233
           MITRA+AG+ KPK+F A    SEP ++ +AL    WK AMQ E+NAL+ N+TWDLV  PP
Sbjct: 1   MITRAKAGVFKPKVFLA---TSEPTTVVQALETKHWKQAMQDEYNALMKNYTWDLVSLPP 57

Query: 234 HMQIVDHKWVFRVKYHSDGTVDRLKARLVAKGFQQLPGIDYFETFSPVVKPITIRLMFSL 413
             + +  KW+F+ KY  DG++ R KARLVA+GF Q  GIDY +TFSPVV+P++IR++ +L
Sbjct: 58  GRKAITCKWIFKNKYKQDGSILRHKARLVARGFNQQQGIDYTDTFSPVVRPVSIRVVLAL 117

Query: 414 AAARGWKIEQVDINNAFLNGDINETVYMSQPVGFVYSLRPQHVCKLTKALYGLKQAPKAW 593
           A ++GW I Q+D++NAFLNG++ E +YM QP GF +      VCKL KA+YGLKQAP+AW
Sbjct: 118 AVSQGWPIHQIDMDNAFLNGELQEEIYMLQPQGF-HKGNSNTVCKLRKAIYGLKQAPRAW 176

Query: 594 NDKLKAFLMSIGFKSSMSDPSLFFLKTGPHXXXXXXXXXXXXXTGDDHSSVLSIIQQLNK 773
             KL   L+ +GFK + SD SLF   +                T +  +++ S+IQ L++
Sbjct: 177 FQKLTLTLIQLGFKQAKSDNSLFISTSRTTSIYILIYVDDIIITSNSSTTIQSLIQNLHQ 236

Query: 774 TFALKHLGEVHYFLGIETHKLPA-GILLNQTKYATDILKKTNMVDSKPCDSPYNAAQKLS 950
            F LK LG +H+FLGIE +   A GI L+QTKY  DIL K NM ++K   +P   A KL+
Sbjct: 237 FFPLKDLGRLHHFLGIEVNSDGAGGIHLSQTKYLMDILDKLNMSNAKSVKTPMAPASKLT 296


>gb|AAK62788.1|AC027036_9 polyprotein, putative [Arabidopsis thaliana]
            gi|18265373|dbj|BAB84015.1| polyprotein [Arabidopsis
            thaliana]
          Length = 1466

 Score =  298 bits (763), Expect = 2e-88
 Identities = 148/305 (48%), Positives = 209/305 (68%), Gaps = 6/305 (1%)
 Frame = +3

Query: 57   MITRARAGIHKPK----IFTALTSVSEPKSISEALSDPQWKSAMQAEFNALISNHTWDLV 224
            M TRA+AGI KP     +  +L + SEP++  +AL D +W++AM +E NA I NHTWDLV
Sbjct: 929  MGTRAKAGIIKPNPKYSLAVSLAAESEPRTAIQALKDERWRNAMGSEINAQIGNHTWDLV 988

Query: 225  PPP--HMQIVDHKWVFRVKYHSDGTVDRLKARLVAKGFQQLPGIDYFETFSPVVKPITIR 398
            PPP  H+ IV  +W+F  KY+SDG+++R KARLVAKG+ Q PG+DY ETFSPV+K  +IR
Sbjct: 989  PPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIR 1048

Query: 399  LMFSLAAARGWKIEQVDINNAFLNGDINETVYMSQPVGFVYSLRPQHVCKLTKALYGLKQ 578
            ++  +A  R W I Q+D+NNAFL G + + VYMSQP GF+   RP +VCKL KALYGLKQ
Sbjct: 1049 IVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQ 1108

Query: 579  APKAWNDKLKAFLMSIGFKSSMSDPSLFFLKTGPHXXXXXXXXXXXXXTGDDHSSVLSII 758
            AP+AW  +L+ +L++IGF +S+SD SLF L+ G               TG+D + + + +
Sbjct: 1109 APRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTL 1168

Query: 759  QQLNKTFALKHLGEVHYFLGIETHKLPAGILLNQTKYATDILKKTNMVDSKPCDSPYNAA 938
              L++ F++K   E+HYFLGIE  ++P G+ L+Q +Y  D+L +TNM+ +KP  +P   +
Sbjct: 1169 DNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPS 1228

Query: 939  QKLSL 953
             KLSL
Sbjct: 1229 PKLSL 1233


>gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
          Length = 1621

 Score =  298 bits (763), Expect = 2e-88
 Identities = 151/307 (49%), Positives = 198/307 (64%), Gaps = 10/307 (3%)
 Frame = +3

Query: 63   TRARAGIHKPKIFTA---------LTSVSEPKSISEALSDPQWKSAMQAEFNALISNHTW 215
            TR ++G+ K K++T           T+  EP +  EAL D  WK AM +E++AL+ N TW
Sbjct: 637  TRLQSGVRKEKVYTDGTIKYKHSWFTASGEPTNDLEALKDKNWKLAMDSEYDALVKNKTW 696

Query: 216  DLVPPPH-MQIVDHKWVFRVKYHSDGTVDRLKARLVAKGFQQLPGIDYFETFSPVVKPIT 392
             LVPP     I+  KWV+++K  +DGT+DR KARLVAKGF+Q  GIDY +TFSPVVK  T
Sbjct: 697  HLVPPQRGRNIIGCKWVYKIKRKADGTLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAAT 756

Query: 393  IRLMFSLAAARGWKIEQVDINNAFLNGDINETVYMSQPVGFVYSLRPQHVCKLTKALYGL 572
            IR++ SLA ++GW + Q+D+ NAFL+G + E VYM QP GF    +P HVCKL KALYGL
Sbjct: 757  IRIILSLAVSKGWSLRQLDVQNAFLHGYLEEEVYMLQPPGFEDPTKPHHVCKLDKALYGL 816

Query: 573  KQAPKAWNDKLKAFLMSIGFKSSMSDPSLFFLKTGPHXXXXXXXXXXXXXTGDDHSSVLS 752
            KQAP+AW  +L   LM +GFK S +D SLFFL  G                     +  +
Sbjct: 817  KQAPRAWFSRLSKKLMDLGFKGSKADTSLFFLNKGDITMFVLVYVDDIIVASSSEKATAA 876

Query: 753  IIQQLNKTFALKHLGEVHYFLGIETHKLPAGILLNQTKYATDILKKTNMVDSKPCDSPYN 932
            ++Q L   FALK LGE+HYFLGIE  K+  GI+LNQ KYA D+LKK  M+D KP ++P +
Sbjct: 877  LLQNLKGEFALKDLGELHYFLGIEVSKVQNGIVLNQDKYANDLLKKVGMIDCKPANTPLS 936

Query: 933  AAQKLSL 953
             ++KLSL
Sbjct: 937  VSEKLSL 943


>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1460

 Score =  297 bits (761), Expect = 3e-88
 Identities = 151/307 (49%), Positives = 197/307 (64%), Gaps = 10/307 (3%)
 Frame = +3

Query: 63   TRARAGIHKPKIFTA---------LTSVSEPKSISEALSDPQWKSAMQAEFNALISNHTW 215
            TR ++G+ K K++T           T+  EP +  EAL D  WK AM +E++AL+ N TW
Sbjct: 915  TRLQSGVRKEKVYTDGTIKYKHSWFTASGEPTNDLEALKDKNWKLAMDSEYDALVKNKTW 974

Query: 216  DLVPPPH-MQIVDHKWVFRVKYHSDGTVDRLKARLVAKGFQQLPGIDYFETFSPVVKPIT 392
             LVPP     I+  KWV+++K  +DGT+DR KARLVAKGF+Q  GIDY +TFSPVVK  T
Sbjct: 975  HLVPPQRGRNIIGCKWVYKIKRKADGTLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAAT 1034

Query: 393  IRLMFSLAAARGWKIEQVDINNAFLNGDINETVYMSQPVGFVYSLRPQHVCKLTKALYGL 572
            IR++ SLA ++GW + Q+D+ NAFL+G + E VYM QP GF    +P HVCKL KALYGL
Sbjct: 1035 IRIILSLAVSKGWSLRQLDVQNAFLHGYLEEEVYMLQPPGFEDPTKPHHVCKLDKALYGL 1094

Query: 573  KQAPKAWNDKLKAFLMSIGFKSSMSDPSLFFLKTGPHXXXXXXXXXXXXXTGDDHSSVLS 752
            KQAP+AW  +L   LM +GFK S  D SLFFL  G                     +  +
Sbjct: 1095 KQAPRAWFSRLSKKLMDLGFKGSKPDTSLFFLNKGDITMFVLVYVDDIIVASSSEKATAA 1154

Query: 753  IIQQLNKTFALKHLGEVHYFLGIETHKLPAGILLNQTKYATDILKKTNMVDSKPCDSPYN 932
            ++Q L   FALK LGE+HYFLGIE  K+  GI+LNQ KYA D+LKK  M+D KP ++P +
Sbjct: 1155 LLQDLKGEFALKDLGELHYFLGIEVSKVQNGIVLNQDKYANDLLKKVGMIDCKPANTPLS 1214

Query: 933  AAQKLSL 953
             ++KLSL
Sbjct: 1215 VSEKLSL 1221


>gb|KYP70746.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 324

 Score =  275 bits (704), Expect = 3e-88
 Identities = 149/303 (49%), Positives = 196/303 (64%), Gaps = 5/303 (1%)
 Frame = +3

Query: 57  MITRARAGIHKPKIFTAL-TSVSEPKSISEALSDPQWKSAMQAEFNALISNHTWDLVP-P 230
           M TR+++G H P+I  +L  + SEPK++ +AL+DP W SAMQ E+NAL+ NHTWDLV  P
Sbjct: 1   MQTRSKSGFHNPRIHPSLFLAHSEPKTVKQALADPNWFSAMQQEYNALMLNHTWDLVSLP 60

Query: 231 PHMQIVDHKWVFRVKYHSDGTVDRLKARLVAKGFQQLPGIDYFETFSPVVKPITIRLMFS 410
              + V  KWVFRVK ++DG++D+LKARLVAKGF Q+ G D+ ETFSPV+KPITIR++ +
Sbjct: 61  SDRKAVGCKWVFRVKENADGSIDKLKARLVAKGFHQVHGFDFHETFSPVIKPITIRIILT 120

Query: 411 LAAARGWKIEQVDINNAFLNGDINETVYMSQPVGFVYSLRPQHVCKLTKALYGLKQA--P 584
           LA    W + Q+D+NNAFLNG + ET+YM QP GF    +   VCKL KALYGLKQA  P
Sbjct: 121 LALTNNWNLFQLDVNNAFLNGTLEETIYMVQPPGFEAGDK-SLVCKLNKALYGLKQAPPP 179

Query: 585 KAWNDKLKAFLMSIGFKSSMSDPSLFFLKTGPHXXXXXXXXXXXXXTGDDHSSVLSIIQQ 764
           + W +KLK  L   GF++S  DPSLF  +   H             TG     +  I  Q
Sbjct: 180 RQWFNKLKLTLTRFGFQASKCDPSLFQYQHQTHTIFILVYVDDIIITGSSSLLIQQITNQ 239

Query: 765 LNKTFALKHLGEVHYFLGIETHKLP-AGILLNQTKYATDILKKTNMVDSKPCDSPYNAAQ 941
           L+  F+LK LG + YFLGIE   LP   ++L Q+KY  D+L KTN+ ++    SP  +  
Sbjct: 240 LDSIFSLKQLGSLDYFLGIEVKHLPDKSLVLTQSKYIRDLLFKTNLAEAHGAPSPMFSNC 299

Query: 942 KLS 950
           KLS
Sbjct: 300 KLS 302


>gb|KYP34165.1| Copia protein [Cajanus cajan]
          Length = 542

 Score =  282 bits (721), Expect = 5e-88
 Identities = 143/300 (47%), Positives = 201/300 (67%), Gaps = 2/300 (0%)
 Frame = +3

Query: 57  MITRARAGIHKPKIFTALTSVSEPKSISEALSDPQWKSAMQAEFNALISNHTWDLVP-PP 233
           M+TRA+AGI KPK++ A T   EP ++++AL   QWK AMQAE++AL+ N TWDLV  PP
Sbjct: 1   MVTRAKAGIFKPKVYLATT---EPTNVAQALEHKQWKQAMQAEYDALLKNCTWDLVSLPP 57

Query: 234 HMQIVDHKWVFRVKYHSDGTVDRLKARLVAKGFQQLPGIDYFETFSPVVKPITIRLMFSL 413
             + +  KW+F+ KY  DG++ R KARLVA+GF Q PG+DY +TFSPVV+P++IR++ ++
Sbjct: 58  DRKAITCKWIFKNKYSQDGSILRHKARLVARGFNQQPGLDYTDTFSPVVRPVSIRVVLAI 117

Query: 414 AAARGWKIEQVDINNAFLNGDINETVYMSQPVGFVYSLRPQHVCKLTKALYGLKQAPKAW 593
           A ++GW I Q+D++NAFLNGD+ E +YM QP GF +   P  VCKL KA+YGLKQAP+AW
Sbjct: 118 AVSKGWPIHQIDVDNAFLNGDLKEEIYMLQPQGF-HQGSPNTVCKLRKAIYGLKQAPRAW 176

Query: 594 NDKLKAFLMSIGFKSSMSDPSLFFLKTGPHXXXXXXXXXXXXXTGDDHSSVLSIIQQLNK 773
             KL   L  +GF  + SD SLF   +                T +  +++  +IQ L++
Sbjct: 177 FQKLTLTLFRLGFIQAKSDNSLFISTSRTTSIYILVYVDDVIITSNSATAIRGLIQALHQ 236

Query: 774 TFALKHLGEVHYFLGIETHKLPA-GILLNQTKYATDILKKTNMVDSKPCDSPYNAAQKLS 950
            F LK LG +H+FLGIE H   A G+ L+QT+Y TDIL + NM +++P  +P   A KL+
Sbjct: 237 YFPLKDLGRLHHFLGIEVHSDNAGGVHLSQTRYVTDILDRLNMSNARPVKTPMAPASKLT 296


>dbj|BAA78423.1| polyprotein [Arabidopsis thaliana]
          Length = 1431

 Score =  296 bits (759), Expect = 6e-88
 Identities = 147/305 (48%), Positives = 208/305 (68%), Gaps = 6/305 (1%)
 Frame = +3

Query: 57   MITRARAGIHKPK----IFTALTSVSEPKSISEALSDPQWKSAMQAEFNALISNHTWDLV 224
            M TRA+AGI KP     +  +L + SEP++  +AL D +W++AM +E NA I NHTWDLV
Sbjct: 894  MGTRAKAGIIKPNPKYSLAVSLAAESEPRTAIQALKDERWRNAMGSEINAQIGNHTWDLV 953

Query: 225  PPP--HMQIVDHKWVFRVKYHSDGTVDRLKARLVAKGFQQLPGIDYFETFSPVVKPITIR 398
            PPP  H+ IV  +W+F  KY+SDG+++R KAR VAKG+ Q PG+DY ETFSPV+K  +IR
Sbjct: 954  PPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARFVAKGYNQRPGLDYAETFSPVIKSTSIR 1013

Query: 399  LMFSLAAARGWKIEQVDINNAFLNGDINETVYMSQPVGFVYSLRPQHVCKLTKALYGLKQ 578
            ++  +A  R W I Q+D+NNAFL G + + VYMSQP GF+   RP +VCKL KALYGLKQ
Sbjct: 1014 IVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQ 1073

Query: 579  APKAWNDKLKAFLMSIGFKSSMSDPSLFFLKTGPHXXXXXXXXXXXXXTGDDHSSVLSII 758
            AP+AW  +L+ +L++IGF +S+SD SLF L+ G               TG+D + + + +
Sbjct: 1074 APRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTL 1133

Query: 759  QQLNKTFALKHLGEVHYFLGIETHKLPAGILLNQTKYATDILKKTNMVDSKPCDSPYNAA 938
              L++ F++K   E+HYFLGIE  ++P G+ L+Q +Y  D+L +TNM+ +KP  +P   +
Sbjct: 1134 DNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPS 1193

Query: 939  QKLSL 953
             KLSL
Sbjct: 1194 PKLSL 1198


>dbj|BAK41511.1| polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score =  296 bits (759), Expect = 6e-88
 Identities = 147/305 (48%), Positives = 208/305 (68%), Gaps = 6/305 (1%)
 Frame = +3

Query: 57   MITRARAGIHKPK----IFTALTSVSEPKSISEALSDPQWKSAMQAEFNALISNHTWDLV 224
            M TRA+AGI KP     +  +L + SEP++  +AL D +W++AM +E NA I NHTWDLV
Sbjct: 929  MGTRAKAGIIKPNPKYSLAVSLAAESEPRTAIQALKDERWRNAMGSEINAQIGNHTWDLV 988

Query: 225  PPP--HMQIVDHKWVFRVKYHSDGTVDRLKARLVAKGFQQLPGIDYFETFSPVVKPITIR 398
            PPP  H+ IV  +W+F  KY+SDG+++R K RLVAKG+ Q PG+DY ETFSPV+K  +IR
Sbjct: 989  PPPPSHVTIVGCRWIFTKKYNSDGSLNRYKVRLVAKGYNQRPGLDYAETFSPVIKSTSIR 1048

Query: 399  LMFSLAAARGWKIEQVDINNAFLNGDINETVYMSQPVGFVYSLRPQHVCKLTKALYGLKQ 578
            ++  +A  R W I Q+D+NNAFL G + + VYMSQP GF+   RP +VCKL KALYGLKQ
Sbjct: 1049 IVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQ 1108

Query: 579  APKAWNDKLKAFLMSIGFKSSMSDPSLFFLKTGPHXXXXXXXXXXXXXTGDDHSSVLSII 758
            AP+AW  +L+ +L++IGF +S+SD SLF L+ G               TG+D + + + +
Sbjct: 1109 APRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTL 1168

Query: 759  QQLNKTFALKHLGEVHYFLGIETHKLPAGILLNQTKYATDILKKTNMVDSKPCDSPYNAA 938
              L++ F++K   E+HYFLGIE  ++P G+ L+Q +Y  D+L +TNM+ +KP  +P   +
Sbjct: 1169 DNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPS 1228

Query: 939  QKLSL 953
             KLSL
Sbjct: 1229 PKLSL 1233


>gb|AAK62793.1|AC027036_14 polyprotein, putative [Arabidopsis thaliana]
            gi|338746561|dbj|BAK41510.1| polyprotein [Arabidopsis
            thaliana]
          Length = 1466

 Score =  296 bits (759), Expect = 6e-88
 Identities = 147/305 (48%), Positives = 208/305 (68%), Gaps = 6/305 (1%)
 Frame = +3

Query: 57   MITRARAGIHKPK----IFTALTSVSEPKSISEALSDPQWKSAMQAEFNALISNHTWDLV 224
            M TRA+AGI KP     +  +L + SEP++  +AL D +W++AM +E NA I NHTWDLV
Sbjct: 929  MGTRAKAGIIKPNPKYSLAVSLAAESEPRTAIQALKDERWRNAMGSEINAQIGNHTWDLV 988

Query: 225  PPP--HMQIVDHKWVFRVKYHSDGTVDRLKARLVAKGFQQLPGIDYFETFSPVVKPITIR 398
            PPP  H+ IV  +W+F  KY+SDG+++R KAR VAKG+ Q PG+DY ETFSPV+K  +IR
Sbjct: 989  PPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARFVAKGYNQRPGLDYAETFSPVIKSTSIR 1048

Query: 399  LMFSLAAARGWKIEQVDINNAFLNGDINETVYMSQPVGFVYSLRPQHVCKLTKALYGLKQ 578
            ++  +A  R W I Q+D+NNAFL G + + VYMSQP GF+   RP +VCKL KALYGLKQ
Sbjct: 1049 IVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQ 1108

Query: 579  APKAWNDKLKAFLMSIGFKSSMSDPSLFFLKTGPHXXXXXXXXXXXXXTGDDHSSVLSII 758
            AP+AW  +L+ +L++IGF +S+SD SLF L+ G               TG+D + + + +
Sbjct: 1109 APRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTL 1168

Query: 759  QQLNKTFALKHLGEVHYFLGIETHKLPAGILLNQTKYATDILKKTNMVDSKPCDSPYNAA 938
              L++ F++K   E+HYFLGIE  ++P G+ L+Q +Y  D+L +TNM+ +KP  +P   +
Sbjct: 1169 DNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPS 1228

Query: 939  QKLSL 953
             KLSL
Sbjct: 1229 PKLSL 1233