BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia27_contig00025362
         (1929 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN76546.1| hypothetical protein VITISV_010420 [Vitis vinifera]   440   e-137
emb|CAA72989.1| unnamed protein product [Brassica oleracea var. ...   430   e-134
gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsi...   430   e-131
dbj|BAB10503.1| retroelement pol polyprotein-like [Arabidopsis t...   428   e-131
gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsi...   421   e-128
gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hop...   417   e-128
ref|XP_010526682.1| PREDICTED: retrovirus-related Pol polyprotei...   403   e-126
ref|XP_009128559.1| PREDICTED: uncharacterized protein LOC103853...   396   e-125
gb|AAD41979.1| putative retroelement pol polyprotein [Arabidopsi...   408   e-125
ref|XP_010526681.1| PREDICTED: retrovirus-related Pol polyprotei...   403   e-123
ref|XP_010526680.1| PREDICTED: retrovirus-related Pol polyprotei...   403   e-123
ref|XP_010526678.1| PREDICTED: retrovirus-related Pol polyprotei...   403   e-123
gb|AAG10817.1|AC011808_5 Putative retroelement polyprotein [Arab...   383   e-117
ref|XP_010526684.1| PREDICTED: retrovirus-related Pol polyprotei...   376   e-117
ref|XP_010495376.1| PREDICTED: uncharacterized protein LOC104772...   382   e-117
gb|KYP69518.1| Retrovirus-related Pol polyprotein from transposo...   374   e-117
ref|XP_010526683.1| PREDICTED: retrovirus-related Pol polyprotei...   376   e-116
ref|XP_009109940.1| PREDICTED: uncharacterized protein LOC103835...   375   e-115
ref|XP_013594438.1| PREDICTED: uncharacterized protein LOC106302...   374   e-114
gb|AAF79879.1|AC000348_32 T7N9.5 [Arabidopsis thaliana]               379   e-113

>emb|CAN76546.1| hypothetical protein VITISV_010420 [Vitis vinifera]
          Length = 1288

 Score =  440 bits (1132), Expect = e-137
 Identities = 231/485 (47%), Positives = 304/485 (62%), Gaps = 18/485 (3%)
 Frame = -2

Query: 1403 LRNVLLIHSFHFNLLSISSLTQDHDYAVTFRANVCFIQDNSQGKMIGMGKRCDKLYVMDL 1224
            L NVL + +F +NLLS+S+ T     ++ F  + C IQ+ S+GKMIG G R  +LY +D 
Sbjct: 333  LLNVLFVPTFRYNLLSVSAFTDTLSLSMVFTPDACIIQEPSRGKMIGKGSRKGQLYQLDF 392

Query: 1223 SSPFSS-AIGHASGHHKSATANLWHCRLGHPSFSRMELLKSVLSLDSVETNTPCNVCPLA 1047
             S  +  A   AS    S   +LWH RLGHPSFSR++ L+SVL  DS    TPCNVCPLA
Sbjct: 393  DSFVADKAFVAASRIPTSNILSLWHSRLGHPSFSRLKGLQSVLDFDSSFDLTPCNVCPLA 452

Query: 1046 KQRKLPYPXXXXXXXSPFDMIHCDVWGPFSPETVDGFRYFLTIVDDNSRFTWVYLLKQKS 867
            KQR LPY        S FD++H D+WGPFS  +V+G+++FLTIVDD SR TWVY+LK KS
Sbjct: 453  KQRCLPYISLNKRCSSTFDLLHLDIWGPFSVGSVEGYKFFLTIVDDYSRVTWVYMLKNKS 512

Query: 866  DVCKVFTAFYNLVSTQFGIKIKCIRCDNAPEFGLNNFYDEHGIMVQHSCVENPQQNGRVE 687
            +V K    F+  V  QFG ++K IR DNAPE  L+NFY   G++   SCVE PQQN  VE
Sbjct: 513  EVQKYIPDFFAFVKKQFGKEVKAIRSDNAPELFLSNFYHSLGVIHYRSCVETPQQNSVVE 572

Query: 686  RKHQHLLNVARSLLFQSKIPIQYWGDCVLTSTYLINRIPTPLLNHKTPFEILFKKQPNYK 507
            RKHQH+LNVAR+LLF S +P+ YW DC+LT+ YLINR P+P LN+KTPFEIL  K P+Y 
Sbjct: 573  RKHQHILNVARALLFXSSLPVCYWSDCILTAVYLINRTPSPFLNNKTPFEILHDKLPDYS 632

Query: 506  HLKVFGCLCYGSTLDRTRHKFSPRASKSVFLGYPSGYKGYKLLELESNRVYISRNVVXXX 327
            HL+VFGCLCY STL   R KFSPRA  +VFLGYP G+KGYKLL++E+  + ISRN     
Sbjct: 633  HLRVFGCLCYVSTLKANRTKFSPRAKAAVFLGYPFGFKGYKLLDIETRSISISRNT---- 688

Query: 326  XXXXXXXXXXXXXXXXXXXFVLPHSAPDVSNIPS---------PASTAPHRRSQRLIRPP 174
                                VLP  A D     S         P   AP  R  R+ + P
Sbjct: 689  ----NPCSSPDISSDLFHDRVLPCIAADNDQSSSVLPRVVSQPPLQVAPSSRPTRVSKQP 744

Query: 173  SHLSDYVCT--------SSTNACYPVSAIINYTRLSPSHRSYISALNKIVEPATYSQASA 18
            S+L DY C+         + +  +P+   ++Y +LSPS++ +  +++ I EP+++++A+ 
Sbjct: 745  SYLKDYHCSLINSVAHVETHSTSHPIQHFLSYDKLSPSYKLFSLSVSIISEPSSFAKAAE 804

Query: 17   LPEWR 3
            +PEWR
Sbjct: 805  IPEWR 809


>emb|CAA72989.1| unnamed protein product [Brassica oleracea var. viridis]
          Length = 1131

 Score =  430 bits (1105), Expect = e-134
 Identities = 221/477 (46%), Positives = 296/477 (62%), Gaps = 5/477 (1%)
 Frame = -2

Query: 1421 IGEWSDLRNVLLIHSFHFNLLSISSLTQDHDYAVTFRANVCFIQDNSQGKMIGMGKRCDK 1242
            + E   L NVL I  F  NLLSISSLT D    V F  + C IQD ++G  IG G+R   
Sbjct: 437  LNEHITLHNVLYIPEFRLNLLSISSLTSDIGSQVIFDVSSCAIQDPTKGWTIGQGRRVAN 496

Query: 1241 LYVMDL-SSPFSSAIGHASGHHKSATANLWHCRLGHPSFSRMELLKSVLSLDSVET--NT 1071
            LYV+D+ SSP           +     +LWH RLGHPS++R++ +   L     +   + 
Sbjct: 497  LYVLDVKSSPMKI--------NAVVDISLWHKRLGHPSYTRLDKISEALGTTKHKNKGDA 548

Query: 1070 PCNVCPLAKQRKLPYPXXXXXXXSPFDMIHCDVWGPFSPETVDGFRYFLTIVDDNSRFTW 891
             C+VC LAKQ+KL Y        + F ++H DVWGPFS ET++G++YFLTIVDD+SR TW
Sbjct: 549  HCHVCHLAKQKKLSYSSQNHICTASFQLLHVDVWGPFSVETLEGYKYFLTIVDDHSRATW 608

Query: 890  VYLLKQKSDVCKVFTAFYNLVSTQFGIKIKCIRCDNAPEFGLNNFYDEHGIMVQHSCVEN 711
            +YLL+ KSDV  +F  F N + TQ+  KIK +R DNAPE      + E GI+  HSC E 
Sbjct: 609  IYLLQSKSDVLHIFPTFVNQIETQYNTKIKSVRRDNAPELSFTELFKEKGIVSYHSCPET 668

Query: 710  PQQNGRVERKHQHLLNVARSLLFQSKIPIQYWGDCVLTSTYLINRIPTPLLNHKTPFEIL 531
             +QN  +ERKHQHLLNVAR+L+FQS++P+QYWGDCVLT+ +LINR P+PLL +K+P+E+L
Sbjct: 669  LEQNSVLERKHQHLLNVARALMFQSQVPLQYWGDCVLTAAFLINRTPSPLLANKSPYEVL 728

Query: 530  FKKQPNYKHLKVFGCLCYGSTLDRTRHKFSPRASKSVFLGYPSGYKGYKLLELESNRVYI 351
              K P Y  L+ FGCLCYGST  + RHKF PR+   VFLGYPSGYKGYKLL+LESN++YI
Sbjct: 729  MGKAPQYDQLRTFGCLCYGSTSPKQRHKFMPRSRACVFLGYPSGYKGYKLLDLESNKIYI 788

Query: 350  SRNVV--XXXXXXXXXXXXXXXXXXXXXXFVLPHSAPDVSNIPSPASTAPHRRSQRLIRP 177
            SRNV                          V   SAP  +   SP ST   + S+R    
Sbjct: 789  SRNVTFHEDIFPMAKHQKMDESSLHFFPPKVTVPSAPSPNISSSPFSTLSPQISKRQRTV 848

Query: 176  PSHLSDYVCTSSTNACYPVSAIINYTRLSPSHRSYISALNKIVEPATYSQASALPEW 6
            P+HL D+ C S  ++ YP+S+ ++Y+++S  H +YI+++  I  P +Y++     EW
Sbjct: 849  PAHLKDFHCYSVHDSAYPISSTLSYSQISSHHLAYINSITNIPIPQSYAEVRQSKEW 905



 Score = 70.1 bits (170), Expect = 7e-09
 Identities = 48/178 (26%), Positives = 72/178 (40%), Gaps = 9/178 (5%)
 Frame = -3

Query: 1924 CSHCGRNNHTVETCYKLHGYPPGYGKNRSNGQSKNYGQAKPRGHVNQIXXXXXXXXXXXX 1745
            CS C R  H  E CYK HG+PPG+  ++   QS      KP+    Q+            
Sbjct: 261  CSFCNRVGHIAERCYKKHGFPPGF-VSKYKSQSSGDRLQKPKQVAAQVSFSPPNSGQSPM 319

Query: 1744 XXXLTM-----EQCQQLLTFLNSQMQQHT----SLHTNPQPXXXXXXXXXXXXSHLVCSA 1592
                 +     EQ QQ +   +SQ+   T       ++ QP               +   
Sbjct: 320  TMDHLVGNHSKEQLQQFIALFSSQLPNVTMGSNEASSSKQPMDNSGISFNPTTLVFIGLL 379

Query: 1591 SFIPNKIVKSSWVIDTGATHHVACSLDTLHSSKLVTDVCVTLPNGHNIQVDRVGEVRL 1418
            +   + +   +W+ID+GATHHV        S  + T   V LPNG  +++  VG V+L
Sbjct: 380  TVSRHTLANETWIIDSGATHHVCHDRSMYTSIDITTTSNVNLPNGMIVKISGVGIVQL 437


>gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1454

 Score =  430 bits (1105), Expect = e-131
 Identities = 223/477 (46%), Positives = 298/477 (62%), Gaps = 11/477 (2%)
 Frame = -2

Query: 1403 LRNVLLIHSFHFNLLSISSLTQDHDYAVTFRANVCFIQDNSQGKMIGMGKRCDKLYVMDL 1224
            L+NVL I  F  NL+SISSLT D    V F  N C IQD  +G+M+G G+R   LY++D+
Sbjct: 483  LKNVLFIPEFRLNLISISSLTDDIGSRVIFDKNSCEIQDLIKGRMLGQGRRVANLYLLDV 542

Query: 1223 SSPFSSAIGHASGHHKSATANLWHCRLGHPSFSRMELLKSVLSLDSVETNTP--CNVCPL 1050
                 S        +     ++WH RLGH S  R++ +   L     +      C+VC L
Sbjct: 543  GDQSISV-------NAVVDISMWHRRLGHASLQRLDAISDSLGTTRHKNKGSDFCHVCHL 595

Query: 1049 AKQRKLPYPXXXXXXXSPFDMIHCDVWGPFSPETVDGFRYFLTIVDDNSRFTWVYLLKQK 870
            AKQRKL +P         FD++H DVWGPFS ETV+G++YFLTIVDD+SR TW+YLLK K
Sbjct: 596  AKQRKLSFPTSNKVCKEIFDLLHIDVWGPFSVETVEGYKYFLTIVDDHSRATWMYLLKTK 655

Query: 869  SDVCKVFTAFYNLVSTQFGIKIKCIRCDNAPEFGLNNFYDEHGIMVQHSCVENPQQNGRV 690
            S+V  VF AF   V  Q+ +K+K +R DNAPE    +FY E GI+  HSC E P+QN  V
Sbjct: 656  SEVLTVFPAFIQQVENQYKVKVKAVRSDNAPELKFTSFYAEKGIVSFHSCPETPEQNSVV 715

Query: 689  ERKHQHLLNVARSLLFQSKIPIQYWGDCVLTSTYLINRIPTPLLNHKTPFEILFKKQPNY 510
            ERKHQH+LNVAR+L+FQS++P+  WGDCVLT+ +LINR P+ LL +KTP+EIL    P Y
Sbjct: 716  ERKHQHILNVARALMFQSQVPLSLWGDCVLTAVFLINRTPSQLLMNKTPYEILTGTAPVY 775

Query: 509  KHLKVFGCLCYGSTLDRTRHKFSPRASKSVFLGYPSGYKGYKLLELESNRVYISRNVVXX 330
            + L+ FGCLCY ST  + RHKF PR+   +FLGYPSGYKGYKL++LESN V+ISRNV   
Sbjct: 776  EQLRTFGCLCYSSTSPKQRHKFQPRSRACLFLGYPSGYKGYKLMDLESNTVFISRNVQFH 835

Query: 329  XXXXXXXXXXXXXXXXXXXXFVLPHSAPDV-------SNIPSPASTAPHR-RSQRLIRPP 174
                                 ++P S+  +       S++PS  S  P +  SQR+ +PP
Sbjct: 836  EEVFPLAKNPGSESSLKLFTPMVPVSSGIISDTTHSPSSLPSQISDLPPQISSQRVRKPP 895

Query: 173  SHLSDYVC-TSSTNACYPVSAIINYTRLSPSHRSYISALNKIVEPATYSQASALPEW 6
            +HL+DY C T  ++  YP+S+ I+Y+++SPSH  YI+ + KI  P  Y++A    EW
Sbjct: 896  AHLNDYHCNTMQSDHKYPISSTISYSKISPSHMCYINNITKIPIPTNYAEAQDTKEW 952



 Score = 62.0 bits (149), Expect = 2e-06
 Identities = 49/179 (27%), Positives = 73/179 (40%), Gaps = 5/179 (2%)
 Frame = -3

Query: 1924 CSHCGRNNHTVETCYKLHGYPPGYGKNRSNGQSKNYGQAKPRGHVNQIXXXXXXXXXXXX 1745
            CS   R  H  E CYK HG+PPG+      G+     + KP    N              
Sbjct: 309  CSFYNRVGHIAERCYKKHGFPPGFTPKGKAGEKLQ--KPKPLA-ANVAESSEVNTSLESM 365

Query: 1744 XXXLTMEQCQQLLTFLNSQMQQ---HTSLHTNPQPXXXXXXXXXXXXSHLVCSASFIPNK 1574
               L+ EQ QQ +   +SQ+Q     T    +                  +   +   + 
Sbjct: 366  VGNLSKEQLQQFIAMFSSQLQNTPPSTYATASTSQSDNLGICFSPSTYSFIGILTVARHT 425

Query: 1573 IVKSSWVIDTGATHHVACSLDTLHSSKLVTDV--CVTLPNGHNIQVDRVGEVRLGNGLI 1403
            +  ++WVID+GATHHV  S D    S L T V   V LP G  +++  VG ++L + ++
Sbjct: 426  LSSATWVIDSGATHHV--SHDRSLFSSLDTSVLSAVNLPTGPTVKISGVGTLKLNDDIL 482


>dbj|BAB10503.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1475

 Score =  428 bits (1101), Expect = e-131
 Identities = 218/478 (45%), Positives = 299/478 (62%), Gaps = 12/478 (2%)
 Frame = -2

Query: 1403 LRNVLLIHSFHFNLLSISSLTQDHDYAVTFRANVCFIQDNSQGKMIGMGKRCDKLYVMDL 1224
            L+NVL I  F  NLLS+S  T+D    + F  + C IQD  + + IG G +   LYV+D 
Sbjct: 498  LKNVLYIPEFRLNLLSVSQQTKDMKCKIYFDEDCCVIQDPIKEQKIGRGNQIGGLYVLDT 557

Query: 1223 SSPFSSAIGHASGHHKSATAN------LWHCRLGHPSFSRMELLKSVLSLD--SVETNTP 1068
            SS   +++   S   +    N      LWH RLGHPS+ + ++L  VL L   + E    
Sbjct: 558  SSVECTSVDINSSVTEKQYCNAVVDSALWHSRLGHPSYEKNDVLHDVLGLPKRNKEDLVH 617

Query: 1067 CNVCPLAKQRKLPYPXXXXXXXSPFDMIHCDVWGPFSPETVDGFRYFLTIVDDNSRFTWV 888
            C++C  AKQ+ L +P       + FD+IH D WGPF+  T +G++YFLTIVDD SR TWV
Sbjct: 618  CSICQKAKQKHLSFPSKNNMSENKFDLIHIDTWGPFATPTTEGYKYFLTIVDDYSRATWV 677

Query: 887  YLLKQKSDVCKVFTAFYNLVSTQFGIKIKCIRCDNAPEFGLNNFYDEHGIMVQHSCVENP 708
            YL+K K+DV ++F  F  +V TQ+G  +K +R DNAPE      Y   GI+  HSC E P
Sbjct: 678  YLMKAKNDVLQIFPDFLKMVETQYGTLVKAVRSDNAPELRFEALYQAKGIISYHSCPETP 737

Query: 707  QQNGRVERKHQHLLNVARSLLFQSKIPIQYWGDCVLTSTYLINRIPTPLLNHKTPFEILF 528
            QQN  VERKHQH+LNVAR+L+F++ +P+++WGDC+L++ +LINR+PTPLL++K+PFE+L 
Sbjct: 738  QQNSVVERKHQHILNVARALMFEANMPLEFWGDCILSAVFLINRLPTPLLSNKSPFELLH 797

Query: 527  KKQPNYKHLKVFGCLCYGSTLDRTRHKFSPRASKSVFLGYPSGYKGYKLLELESNRVYIS 348
             K P+Y  LKVFGCLCY ST  + RHKF+PRA   VFLGYPSGYKGYKLL+LE+N ++IS
Sbjct: 798  LKVPDYTSLKVFGCLCYESTSPQQRHKFAPRARACVFLGYPSGYKGYKLLDLETNTIHIS 857

Query: 347  RNVVXXXXXXXXXXXXXXXXXXXXXXFVLPHSAPDVSNIPSPASTAPHRRSQRLIRPPSH 168
            R+VV                       ++     ++ N PS + +AP   S+R  RPP +
Sbjct: 858  RHVV---FYETVFPFTDKTIIPRDVFDLVDPVHENIENPPSTSESAPKVSSKRESRPPGY 914

Query: 167  LSDYVCTS----STNACYPVSAIINYTRLSPSHRSYISALNKIVEPATYSQASALPEW 6
            L DY C +    + +  YP++A INYT+LS    +YI A+NK  EP TY+QA  + EW
Sbjct: 915  LQDYFCNAVPDVTKDVRYPLNAYINYTQLSEEFTAYICAVNKYPEPCTYAQAKKIKEW 972


>gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1461

 Score =  421 bits (1082), Expect = e-128
 Identities = 224/473 (47%), Positives = 297/473 (62%), Gaps = 7/473 (1%)
 Frame = -2

Query: 1403 LRNVLLIHSFHFNLLSISSLTQDHDYAVTFRANVCFIQDNSQGKMIGMGKRCDKLYVMDL 1224
            L+NVL I  F  NL+SISSLT D    V F  + C IQD ++G  +G GKR   LYV+D 
Sbjct: 494  LQNVLFIPEFRLNLISISSLTTDLGTRVIFDPSCCQIQDLTKGLTLGEGKRIGNLYVLDT 553

Query: 1223 SSPFSSAIGHASGHHKSATANLWHCRLGHPSFSRMELLKSVLSLDSVETNTP--CNVCPL 1050
             SP  S        +     ++WH RLGHPSFSR++ L  VL     +      C+VC L
Sbjct: 554  QSPAISV-------NAVVDVSVWHKRLGHPSFSRLDSLSEVLGTTRHKNKKSAYCHVCHL 606

Query: 1049 AKQRKLPYPXXXXXXXSPFDMIHCDVWGPFSPETVDGFRYFLTIVDDNSRFTWVYLLKQK 870
            AKQ+KL +P       S F+++H DVWGPFS ETV+G++YFLTIVDD+SR TW+YLLK K
Sbjct: 607  AKQKKLSFPSANNICNSTFELLHIDVWGPFSVETVEGYKYFLTIVDDHSRATWIYLLKSK 666

Query: 869  SDVCKVFTAFYNLVSTQFGIKIKCIRCDNAPEFGLNNFYDEHGIMVQHSCVENPQQNGRV 690
            SDV  VF AF +LV  Q+  ++K +R DNA E     FY   GI+  HSC E P+QN  V
Sbjct: 667  SDVLTVFPAFIDLVENQYDTRVKSVRSDNAKELAFTEFYKAKGIVSFHSCPETPEQNSVV 726

Query: 689  ERKHQHLLNVARSLLFQSKIPIQYWGDCVLTSTYLINRIPTPLLNHKTPFEILFKKQPNY 510
            ERKHQH+LNVAR+L+FQS + + YWGDCVLT+ +LINR P+ LL++KTPFE+L  K P+Y
Sbjct: 727  ERKHQHILNVARALMFQSNMSLPYWGDCVLTAVFLINRTPSALLSNKTPFEVLTGKLPDY 786

Query: 509  KHLKVFGCLCYGSTLDRTRHKFSPRASKSVFLGYPSGYKGYKLLELESNRVYISRNVVXX 330
              LK FGCLCY ST  + RHKF PR+   VFLGYP G+KGYKLL+LESN V+ISRNV   
Sbjct: 787  SQLKTFGCLCYSSTSSKQRHKFLPRSRACVFLGYPFGFKGYKLLDLESNVVHISRNVEFH 846

Query: 329  XXXXXXXXXXXXXXXXXXXXFVL-PHSAPD--VSNIPSP-ASTAPHRRSQRLIRPPSHLS 162
                                  + P S+ +   S++PSP  S +     +R+ + P+HL 
Sbjct: 847  EELFPLASSQQSATTASDVFTPMDPLSSGNSITSHLPSPQISPSTQISKRRITKFPAHLQ 906

Query: 161  DYVC-TSSTNACYPVSAIINYTRLSPSHRSYISALNKIVEPATYSQASALPEW 6
            DY C   + +  +P+S+ ++Y+++SPSH  YI+ ++KI  P +Y +A    EW
Sbjct: 907  DYHCYFVNKDDSHPISSSLSYSQISPSHMLYINNISKIPIPQSYHEAKDSKEW 959


>gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hopscotch polyprotein
            (gb|U12626) [Arabidopsis thaliana]
          Length = 1315

 Score =  417 bits (1072), Expect = e-128
 Identities = 215/500 (43%), Positives = 290/500 (58%), Gaps = 27/500 (5%)
 Frame = -2

Query: 1421 IGEWSDLRNVLLIHSFHFNLLSISSLTQDHDYAVTFRANVCFIQDNSQGKMIGMGKRCDK 1242
            +G    L +VL I  F FNLLS+SSLT+     + F    C +QD ++  M+GMGK+   
Sbjct: 319  LGRHLILNDVLFIPQFKFNLLSVSSLTKSMGCRIWFDETSCVLQDATRELMVGMGKQVAN 378

Query: 1241 LYVMDLSSPFSSAIGHASGHHKSATANLWHCRLGHPSFSRMELLKSVLSLDSVETNTP-- 1068
            LY++DL S        +       + +LWH RLGHPS  +++ + S+LS    + NT   
Sbjct: 379  LYIVDLDSLSHPGTDSSITVASVTSHDLWHKRLGHPSVQKLQPMSSLLSFPKQKNNTDFH 438

Query: 1067 CNVCPLAKQRKLPYPXXXXXXXSPFDMIHCDVWGPFSPETVDGFRYFLTIVDDNSRFTWV 888
            C VC ++KQ+ LP+         PFD+IH D WGPFS +T DG+RYFLTIVDD SR TWV
Sbjct: 439  CRVCHISKQKHLPFVSHNNKSSRPFDLIHIDTWGPFSVQTHDGYRYFLTIVDDYSRATWV 498

Query: 887  YLLKQKSDVCKVFTAFYNLVSTQFGIKIKCIRCDNAPEFGLNNFYDEHGIMVQHSCVENP 708
            YLL+ KSDV  V   F  +V  QF   IK +R DNAPE     FY   GI+  HSC E P
Sbjct: 499  YLLRNKSDVLTVIPTFVTMVENQFETTIKGVRSDNAPELNFTQFYHSKGIVPYHSCPETP 558

Query: 707  QQNGRVERKHQHLLNVARSLLFQSKIPIQYWGDCVLTSTYLINRIPTPLLNHKTPFEILF 528
            QQN  VERKHQH+LNVARSL FQS IPI YWGDC+LT+ YLINR+P P+L  K PFE+L 
Sbjct: 559  QQNSVVERKHQHILNVARSLFFQSHIPISYWGDCILTAVYLINRLPAPILEDKCPFEVLT 618

Query: 527  KKQPNYKHLKVFGCLCYGSTLDRTRHKFSPRASKSVFLGYPSGYKGYKLLELESNRVYIS 348
            K  P Y H+KVFGCLCY ST  + RHKFSPRA    F+GYPSG+KGYKLL+LE++ + +S
Sbjct: 619  KTVPTYDHIKVFGCLCYASTSPKDRHKFSPRAKACAFIGYPSGFKGYKLLDLETHSIIVS 678

Query: 347  RNVVXXXXXXXXXXXXXXXXXXXXXXFVLP------------------------HSAPDV 240
            R+VV                       + P                         SA   
Sbjct: 679  RHVVFHEELFPFLGSDLSQEEQNFFPDLNPTPPMQRQSSDHVNPSDSSSSVEILPSANPT 738

Query: 239  SNIPSPASTAPHRRSQRLIRPPSHLSDYVCTSSTNAC-YPVSAIINYTRLSPSHRSYISA 63
            +N+P P+    HR++++    P++L DY C S  ++  + +   ++Y R++  + ++++ 
Sbjct: 739  NNVPEPSVQTSHRKAKK----PAYLQDYYCHSVVSSTPHEIRKFLSYDRINDPYLTFLAC 794

Query: 62   LNKIVEPATYSQASALPEWR 3
            L+K  EP+ Y++A  L  WR
Sbjct: 795  LDKTKEPSNYTEAEKLQVWR 814


>ref|XP_010526682.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
            1-94 isoform X4 [Tarenaya hassleriana]
          Length = 940

 Score =  403 bits (1036), Expect = e-126
 Identities = 228/515 (44%), Positives = 298/515 (57%), Gaps = 48/515 (9%)
 Frame = -2

Query: 1403 LRNVLLIHSFHFNLLSISSLTQDHDYAVTFRANVCFIQDNSQGKMIGMGKRCDKLYVMDL 1224
            L +VL I +FH+NLLS+S LTQ    +V F  +   IQD ++G MIG GK+   LY++++
Sbjct: 157  LSSVLFIPTFHYNLLSVSCLTQQTSCSVHFFRDSFIIQDLTRGLMIGKGKQLHNLYILEM 216

Query: 1223 SSPFSSAIGHASGHHKSATA---NLWHCRLGHPSFSRMELL--KSVLSLDSVETNT-PCN 1062
                S+ I   S    + +A   +LWH RLGHPS  R+  +   S L   + ET++  C 
Sbjct: 217  LHTSSTTISLPSKFCTTLSATTFDLWHHRLGHPSDIRVHSIDKSSELKFSTSETSSISCP 276

Query: 1061 VCPLAKQRKLPYPXXXXXXXSPFDMIHCDVWGPFSPETVDGFRYFLTIVDDNSRFTWVYL 882
            VCPLAKQR+L +P        PF+++H DVWGP S  + DG R+FL+IVDD SR TWVYL
Sbjct: 277  VCPLAKQRRLSFPVSSHVSKFPFELLHVDVWGPCSEISTDGHRFFLSIVDDYSRCTWVYL 336

Query: 881  LKQKSDVCKVFTAFYNLVSTQFGIKIKCIRCDNAPEFGLNNFYDEHGIMVQHSCVENPQQ 702
            LK KSDV + F  F + V  QF   IKC+R DNAPE G  + + + GI+ Q SC   PQQ
Sbjct: 337  LKSKSDVLQKFPEFVSFVENQFNASIKCVRSDNAPELGFKSLFAKKGILHQFSCPYTPQQ 396

Query: 701  NGRVERKHQHLLNVARSLLFQSKIPIQYWGDCVLTSTYLINRIPTPLLNHKTPFEILFKK 522
            N  VERKHQH+LNVAR+LLFQS +P+ +WGDC+LTS YLINR P+PLL +KTPFE+L   
Sbjct: 397  NSIVERKHQHILNVARALLFQSNVPLAFWGDCILTSVYLINRTPSPLLQNKTPFELLTGC 456

Query: 521  QPNYKHLKVFGCLCYGSTLDRTRHKFSPRASKSVFLGYPSGYKGYKLLELESNRVYISRN 342
             P+Y HL+VFGCLCY STL + RHKF+PRA  +VFLGYP G KGYK+L+L SN V ISRN
Sbjct: 457  SPSYSHLRVFGCLCYVSTLTKDRHKFNPRAMSAVFLGYPHGVKGYKVLDLHSNAVLISRN 516

Query: 341  VV-XXXXXXXXXXXXXXXXXXXXXXFVLPHSAPDVS--NIPSPASTAP------------ 207
            VV                        V P     +S  N+ S ++ +P            
Sbjct: 517  VVFHETTFPFKSFPQSQPALDPFPQSVSPFFYESISPQNLSSSSALSPVSQEFPTDPISS 576

Query: 206  ------------------HRRSQRLIRPPSHLSDYVC-------TSSTNAC--YPVSAII 108
                                R QR  + P++LSDY C       T   N    YP+SA +
Sbjct: 577  LGSSETDSSGFVTSSSAHVTRPQRQSKTPAYLSDYHCYLISHNSTPHPNPVTPYPLSACL 636

Query: 107  NYTRLSPSHRSYISALNKIVEPATYSQASALPEWR 3
             Y  LSPS+R++   +    EP +Y+QA+    WR
Sbjct: 637  TYDLLSPSYRTFALNITTAPEPQSYTQAAKFESWR 671


>ref|XP_009128559.1| PREDICTED: uncharacterized protein LOC103853393 [Brassica rapa]
          Length = 964

 Score =  396 bits (1018), Expect(2) = e-125
 Identities = 206/480 (42%), Positives = 288/480 (60%), Gaps = 21/480 (4%)
 Frame = -2

Query: 1403 LRNVLLIHSFHFNLLSISSLTQDHDYAVTFRANVCFIQDNSQGKMIGMGKRCDKLYVMD- 1227
            LRNVL +  F  NLLS+S LT+D  Y V F    CFIQD ++G MIG G++   LYV+D 
Sbjct: 480  LRNVLYLSDFRLNLLSVSQLTKDLGYRVMFDPGACFIQDPTKGLMIGRGEQICNLYVLDA 539

Query: 1226 LSSPFSSAIGHASGHHKSATAN--LWHCRLGHPSFSRMELLKSVLSLDSVETNT-PCNVC 1056
            +    SS I   S    S   +  LWH RLGHPS S+ E +  V     +      C +C
Sbjct: 540  VDITGSSFIQQQSASCSSVVVDVSLWHNRLGHPSMSKTENIVDVFGFKHINKEPFHCAIC 599

Query: 1055 PLAKQRKLPYPXXXXXXXSPFDMIHCDVWGPFSPETVDGFRYFLTIVDDNSRFTWVYLLK 876
            PLAKQ++LPY        + FD++H D+WGPFS  T +G+++FLTIVDD++R  W+YLL+
Sbjct: 600  PLAKQKRLPYNPQNNMSQNVFDLLHIDIWGPFSVSTAEGYKHFLTIVDDHTRVIWIYLLR 659

Query: 875  QKSDVCKVFTAFYNLVSTQFGIKIKCIRCDNAPEFGLNNFYDEHGIMVQHSCVENPQQNG 696
             K++V  VF  F  ++ T++  K+K +R DNAPE    +FY + GI+  HSC E P+QN 
Sbjct: 660  TKNEVLTVFPDFIQMIETKYKSKVKAVRSDNAPELKFVDFYKKKGIVSYHSCPETPKQNS 719

Query: 695  RVERKHQHLLNVARSLLFQSKIPIQYWGDCVLTSTYLINRIPTPLLNHKTPFEILFKKQP 516
             VERKHQ +LNVAR+L+FQS +P++ WGDCVLT+ ++INR+PTPLL  K+PFE+L  K+ 
Sbjct: 720  VVERKHQLILNVARALMFQSHVPLELWGDCVLTAVFIINRLPTPLLKDKSPFEVLTSKRV 779

Query: 515  NYKHLKVFGCLCYGSTLDRTRHKFSPRASKSVFLGYPSGYKGYKLLELESNRVYISRNVV 336
            +Y   KVFGCL Y ST  + RHKF PR+   +FLGYP+GYKGYKLL+L++N ++ISRNV 
Sbjct: 780  DYGGFKVFGCLAYYSTSTKNRHKFQPRSKPCIFLGYPAGYKGYKLLDLDTNSIHISRNVT 839

Query: 335  XXXXXXXXXXXXXXXXXXXXXXFVLPH--SAPD------------VSNIPSPASTAPHRR 198
                                    +P   SAP+            V+  P          
Sbjct: 840  FHEAIFPYAKDHTEPYEDIFSSAPIPEPTSAPNSDLHVEEPVAVPVTETPLADVGLSKAE 899

Query: 197  SQRLIRPPSHLSDYVCT---SSTNACYPVSAIINYTRLSPSHRSYISALNKIVEPATYSQ 27
             +R+ + P+HL DY C    S TN  YP+SA  ++  LS  +++YI ++    EP++++Q
Sbjct: 900  GKRISKLPAHLQDYYCNIAESDTNIPYPLSAYTSFASLSEDYKAYICSVALYPEPSSFTQ 959



 Score = 84.3 bits (207), Expect(2) = e-125
 Identities = 55/186 (29%), Positives = 84/186 (45%), Gaps = 11/186 (5%)
 Frame = -3

Query: 1927 SCSHCGRNNHTVETCYKLHGYPPGY---GKNRSNGQSK--NYGQAKPRGHVNQIXXXXXX 1763
            +C+HCG N HTV+TCYK+HGYP G+   GK +++  S    Y  AKP      +      
Sbjct: 299  TCAHCGYNGHTVDTCYKIHGYPVGFKHKGKKQTDKSSSTPKYNNAKP-----VVAQVGFV 353

Query: 1762 XXXXXXXXXLTMEQCQQLLTFLNSQMQQ---HTSLHTNPQPXXXXXXXXXXXXSHLVCSA 1592
                     LT +Q + ++ + NSQ++      +   +               S  +C  
Sbjct: 354  DSVSNIVNNLTKDQIEGVIAYFNSQLKMQPIQANCVASTSGGMITALPGMAFSSSTLCFV 413

Query: 1591 SFI---PNKIVKSSWVIDTGATHHVACSLDTLHSSKLVTDVCVTLPNGHNIQVDRVGEVR 1421
              +    N +   +W+ID+GATHHVA   D            VTLP G  I++  +G +R
Sbjct: 414  GMLKATSNALCTKTWIIDSGATHHVAHDRDLFLDLTDSISTSVTLPTGLGIKIAGIGSIR 473

Query: 1420 LGNGLI 1403
            L + LI
Sbjct: 474  LTDSLI 479


>gb|AAD41979.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1264

 Score =  408 bits (1048), Expect = e-125
 Identities = 213/473 (45%), Positives = 285/473 (60%), Gaps = 9/473 (1%)
 Frame = -2

Query: 1397 NVLLIHSFHFNLLSISSLTQDHDYAVTFRANVCFIQDNSQGKMIGMGKRCDKLYVMDLSS 1218
            NVL I  F  NL+SISSLT D    V F  +   IQD  +G+M+G G+R   LYVMD+  
Sbjct: 344  NVLFIPEFRLNLISISSLTDDIGSRVIFDQHAFEIQDLIKGRMLGHGRRVANLYVMDVED 403

Query: 1217 PFSSAIGHASGHHKSATANLWHCRLGHPSFSRMELLKSVLSLDSVETNTP--CNVCPLAK 1044
               S        +     + WH RL H S  R++++   L     +      C+VC LAK
Sbjct: 404  TNVSV-------NAVVDISTWHNRLRHASLQRLDVISESLGTTKHKNKGSDYCHVCHLAK 456

Query: 1043 QRKLPYPXXXXXXXSPFDMIHCDVWGPFSPETVDGFRYFLTIVDDNSRFTWVYLLKQKSD 864
             RKL +P         F+M+H D+WGPFS ETVDG++YFLTIVDD+SR TW+YLLK KS+
Sbjct: 457  HRKLSFPSQNNVCNEIFEMLHIDIWGPFSVETVDGYQYFLTIVDDHSRATWIYLLKTKSE 516

Query: 863  VCKVFTAFYNLVSTQFGIKIKCIRCDNAPEFGLNNFYDEHGIMVQHSCVENPQQNGRVER 684
            V  +F  F   V  Q+ +K+K +R DNAPE    + Y   GIM  HSC E P+QN  VER
Sbjct: 517  VLTIFHDFIQQVENQYKVKVKAVRSDNAPELRFTSLYQRKGIMAFHSCPETPEQNSVVER 576

Query: 683  KHQHLLNVARSLLFQSKIPIQYWGDCVLTSTYLINRIPTPLLNHKTPFEILFKKQPNYKH 504
            KHQH+LNVAR+L+FQS++P+  WG+CVLT+ +LINR P+ LL++KTP+EIL    P Y  
Sbjct: 577  KHQHILNVARALMFQSQVPLFLWGECVLTAVFLINRTPSQLLSNKTPYEILSGTAPQYGQ 636

Query: 503  LKVFGCLCYGSTLDRTRHKFSPRASKSVFLGYPSGYKGYKLLELESNRVYISRNVV--XX 330
            L+ FGCLCY ST  + RHKF PR+   +FLGY SGYKGYKL++LESN ++ISRNVV    
Sbjct: 637  LRTFGCLCYSSTSPKQRHKFQPRSKACIFLGYSSGYKGYKLMDLESNAIFISRNVVFLEE 696

Query: 329  XXXXXXXXXXXXXXXXXXXXFVLPHSAPDVSNIPSPAS----TAPHRRSQRLIRPPSHLS 162
                                 ++P      S+  S +S      P   SQR  +PP+HLS
Sbjct: 697  VFPLAGTKKSADSLKLCTPLVLVPSGIQQQSSFSSLSSQISDLPPQISSQRDRKPPTHLS 756

Query: 161  DYVCTS-STNACYPVSAIINYTRLSPSHRSYISALNKIVEPATYSQASALPEW 6
            DYVC +  ++  YP+S+ I+Y+++SPSH  YI+ + KI  P  +++A    EW
Sbjct: 757  DYVCNNMQSDQKYPISSTISYSQISPSHMCYINNITKIPIPTNFAEAQGTKEW 809


>ref|XP_010526681.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
            1-94 isoform X3 [Tarenaya hassleriana]
          Length = 1238

 Score =  403 bits (1036), Expect = e-123
 Identities = 228/515 (44%), Positives = 298/515 (57%), Gaps = 48/515 (9%)
 Frame = -2

Query: 1403 LRNVLLIHSFHFNLLSISSLTQDHDYAVTFRANVCFIQDNSQGKMIGMGKRCDKLYVMDL 1224
            L +VL I +FH+NLLS+S LTQ    +V F  +   IQD ++G MIG GK+   LY++++
Sbjct: 492  LSSVLFIPTFHYNLLSVSCLTQQTSCSVHFFRDSFIIQDLTRGLMIGKGKQLHNLYILEM 551

Query: 1223 SSPFSSAIGHASGHHKSATA---NLWHCRLGHPSFSRMELL--KSVLSLDSVETNT-PCN 1062
                S+ I   S    + +A   +LWH RLGHPS  R+  +   S L   + ET++  C 
Sbjct: 552  LHTSSTTISLPSKFCTTLSATTFDLWHHRLGHPSDIRVHSIDKSSELKFSTSETSSISCP 611

Query: 1061 VCPLAKQRKLPYPXXXXXXXSPFDMIHCDVWGPFSPETVDGFRYFLTIVDDNSRFTWVYL 882
            VCPLAKQR+L +P        PF+++H DVWGP S  + DG R+FL+IVDD SR TWVYL
Sbjct: 612  VCPLAKQRRLSFPVSSHVSKFPFELLHVDVWGPCSEISTDGHRFFLSIVDDYSRCTWVYL 671

Query: 881  LKQKSDVCKVFTAFYNLVSTQFGIKIKCIRCDNAPEFGLNNFYDEHGIMVQHSCVENPQQ 702
            LK KSDV + F  F + V  QF   IKC+R DNAPE G  + + + GI+ Q SC   PQQ
Sbjct: 672  LKSKSDVLQKFPEFVSFVENQFNASIKCVRSDNAPELGFKSLFAKKGILHQFSCPYTPQQ 731

Query: 701  NGRVERKHQHLLNVARSLLFQSKIPIQYWGDCVLTSTYLINRIPTPLLNHKTPFEILFKK 522
            N  VERKHQH+LNVAR+LLFQS +P+ +WGDC+LTS YLINR P+PLL +KTPFE+L   
Sbjct: 732  NSIVERKHQHILNVARALLFQSNVPLAFWGDCILTSVYLINRTPSPLLQNKTPFELLTGC 791

Query: 521  QPNYKHLKVFGCLCYGSTLDRTRHKFSPRASKSVFLGYPSGYKGYKLLELESNRVYISRN 342
             P+Y HL+VFGCLCY STL + RHKF+PRA  +VFLGYP G KGYK+L+L SN V ISRN
Sbjct: 792  SPSYSHLRVFGCLCYVSTLTKDRHKFNPRAMSAVFLGYPHGVKGYKVLDLHSNAVLISRN 851

Query: 341  VV-XXXXXXXXXXXXXXXXXXXXXXFVLPHSAPDVS--NIPSPASTAP------------ 207
            VV                        V P     +S  N+ S ++ +P            
Sbjct: 852  VVFHETTFPFKSFPQSQPALDPFPQSVSPFFYESISPQNLSSSSALSPVSQEFPTDPISS 911

Query: 206  ------------------HRRSQRLIRPPSHLSDYVC-------TSSTNAC--YPVSAII 108
                                R QR  + P++LSDY C       T   N    YP+SA +
Sbjct: 912  LGSSETDSSGFVTSSSAHVTRPQRQSKTPAYLSDYHCYLISHNSTPHPNPVTPYPLSACL 971

Query: 107  NYTRLSPSHRSYISALNKIVEPATYSQASALPEWR 3
             Y  LSPS+R++   +    EP +Y+QA+    WR
Sbjct: 972  TYDLLSPSYRTFALNITTAPEPQSYTQAAKFESWR 1006



 Score = 73.6 bits (179), Expect = 6e-10
 Identities = 59/208 (28%), Positives = 88/208 (42%), Gaps = 19/208 (9%)
 Frame = -3

Query: 1924 CSHCGRNNHTVETCYKLHGYPPGYGKNRSNGQS-------KNYGQAKPRGHVNQIXXXXX 1766
            C+HCG   H V  C++LHGYPPG+ K+  N  S       K+    K +  VN +     
Sbjct: 304  CTHCGMTGHVVSRCFRLHGYPPGH-KSHPNWNSRSGPPRPKSQSLEKAQNQVNLVDVGSA 362

Query: 1765 XXXXXXXXXXL-------TMEQCQQLLTFLNSQM--QQHTSLHTN---PQPXXXXXXXXX 1622
                      +       T+ Q   LL+ L SQ   Q   SL +N   P P         
Sbjct: 363  SNAALAVAQSVDGNTGQNTLAQVHSLLSQLLSQHKGQGSVSLDSNFAVPSPPSPGISLVT 422

Query: 1621 XXXSHLVCSASFIPNKIVKSSWVIDTGATHHVACSLDTLHSSKLVTDVCVTLPNGHNIQV 1442
                    S    P  +    W++DTGA+ HV C+L        +  V V+LPNG +++V
Sbjct: 423  YPLLTTSPSNITFPTAV----WILDTGASTHVCCNLGLFSEVHDIPVVSVSLPNGSSLKV 478

Query: 1441 DRVGEVRLGNGLI*GTSY*FIVFISTFY 1358
             + G V L + +   +    ++FI TF+
Sbjct: 479  TQAGTVLLSSSITLSS----VLFIPTFH 502


>ref|XP_010526680.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
            1-94 isoform X2 [Tarenaya hassleriana]
          Length = 1244

 Score =  403 bits (1036), Expect = e-123
 Identities = 228/515 (44%), Positives = 298/515 (57%), Gaps = 48/515 (9%)
 Frame = -2

Query: 1403 LRNVLLIHSFHFNLLSISSLTQDHDYAVTFRANVCFIQDNSQGKMIGMGKRCDKLYVMDL 1224
            L +VL I +FH+NLLS+S LTQ    +V F  +   IQD ++G MIG GK+   LY++++
Sbjct: 461  LSSVLFIPTFHYNLLSVSCLTQQTSCSVHFFRDSFIIQDLTRGLMIGKGKQLHNLYILEM 520

Query: 1223 SSPFSSAIGHASGHHKSATA---NLWHCRLGHPSFSRMELL--KSVLSLDSVETNT-PCN 1062
                S+ I   S    + +A   +LWH RLGHPS  R+  +   S L   + ET++  C 
Sbjct: 521  LHTSSTTISLPSKFCTTLSATTFDLWHHRLGHPSDIRVHSIDKSSELKFSTSETSSISCP 580

Query: 1061 VCPLAKQRKLPYPXXXXXXXSPFDMIHCDVWGPFSPETVDGFRYFLTIVDDNSRFTWVYL 882
            VCPLAKQR+L +P        PF+++H DVWGP S  + DG R+FL+IVDD SR TWVYL
Sbjct: 581  VCPLAKQRRLSFPVSSHVSKFPFELLHVDVWGPCSEISTDGHRFFLSIVDDYSRCTWVYL 640

Query: 881  LKQKSDVCKVFTAFYNLVSTQFGIKIKCIRCDNAPEFGLNNFYDEHGIMVQHSCVENPQQ 702
            LK KSDV + F  F + V  QF   IKC+R DNAPE G  + + + GI+ Q SC   PQQ
Sbjct: 641  LKSKSDVLQKFPEFVSFVENQFNASIKCVRSDNAPELGFKSLFAKKGILHQFSCPYTPQQ 700

Query: 701  NGRVERKHQHLLNVARSLLFQSKIPIQYWGDCVLTSTYLINRIPTPLLNHKTPFEILFKK 522
            N  VERKHQH+LNVAR+LLFQS +P+ +WGDC+LTS YLINR P+PLL +KTPFE+L   
Sbjct: 701  NSIVERKHQHILNVARALLFQSNVPLAFWGDCILTSVYLINRTPSPLLQNKTPFELLTGC 760

Query: 521  QPNYKHLKVFGCLCYGSTLDRTRHKFSPRASKSVFLGYPSGYKGYKLLELESNRVYISRN 342
             P+Y HL+VFGCLCY STL + RHKF+PRA  +VFLGYP G KGYK+L+L SN V ISRN
Sbjct: 761  SPSYSHLRVFGCLCYVSTLTKDRHKFNPRAMSAVFLGYPHGVKGYKVLDLHSNAVLISRN 820

Query: 341  VV-XXXXXXXXXXXXXXXXXXXXXXFVLPHSAPDVS--NIPSPASTAP------------ 207
            VV                        V P     +S  N+ S ++ +P            
Sbjct: 821  VVFHETTFPFKSFPQSQPALDPFPQSVSPFFYESISPQNLSSSSALSPVSQEFPTDPISS 880

Query: 206  ------------------HRRSQRLIRPPSHLSDYVC-------TSSTNAC--YPVSAII 108
                                R QR  + P++LSDY C       T   N    YP+SA +
Sbjct: 881  LGSSETDSSGFVTSSSAHVTRPQRQSKTPAYLSDYHCYLISHNSTPHPNPVTPYPLSACL 940

Query: 107  NYTRLSPSHRSYISALNKIVEPATYSQASALPEWR 3
             Y  LSPS+R++   +    EP +Y+QA+    WR
Sbjct: 941  TYDLLSPSYRTFALNITTAPEPQSYTQAAKFESWR 975



 Score = 75.1 bits (183), Expect = 2e-10
 Identities = 55/198 (27%), Positives = 89/198 (44%), Gaps = 9/198 (4%)
 Frame = -3

Query: 1924 CSHCGRNNHTVETCYKLHGYPPGYGKNRSNGQSKNYGQAKPRGHVNQIXXXXXXXXXXXX 1745
            C+HCG   H V  C++LHGYPPG+ K+  N  S++ G  +P+                  
Sbjct: 304  CTHCGMTGHVVSRCFRLHGYPPGH-KSHPNWNSRS-GPPRPKSQ---------------- 345

Query: 1744 XXXLTMEQCQ-QLLTFLNSQMQQH-----TSLHTN---PQPXXXXXXXXXXXXSHLVCSA 1592
                ++E+ Q Q+ + L+  + QH      SL +N   P P                 S 
Sbjct: 346  ----SLEKAQNQVHSLLSQLLSQHKGQGSVSLDSNFAVPSPPSPGISLVTYPLLTTSPSN 401

Query: 1591 SFIPNKIVKSSWVIDTGATHHVACSLDTLHSSKLVTDVCVTLPNGHNIQVDRVGEVRLGN 1412
               P  +    W++DTGA+ HV C+L        +  V V+LPNG +++V + G V L +
Sbjct: 402  ITFPTAV----WILDTGASTHVCCNLGLFSEVHDIPVVSVSLPNGSSLKVTQAGTVLLSS 457

Query: 1411 GLI*GTSY*FIVFISTFY 1358
             +   +    ++FI TF+
Sbjct: 458  SITLSS----VLFIPTFH 471


>ref|XP_010526678.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
            1-94 isoform X1 [Tarenaya hassleriana]
          Length = 1275

 Score =  403 bits (1036), Expect = e-123
 Identities = 228/515 (44%), Positives = 298/515 (57%), Gaps = 48/515 (9%)
 Frame = -2

Query: 1403 LRNVLLIHSFHFNLLSISSLTQDHDYAVTFRANVCFIQDNSQGKMIGMGKRCDKLYVMDL 1224
            L +VL I +FH+NLLS+S LTQ    +V F  +   IQD ++G MIG GK+   LY++++
Sbjct: 492  LSSVLFIPTFHYNLLSVSCLTQQTSCSVHFFRDSFIIQDLTRGLMIGKGKQLHNLYILEM 551

Query: 1223 SSPFSSAIGHASGHHKSATA---NLWHCRLGHPSFSRMELL--KSVLSLDSVETNT-PCN 1062
                S+ I   S    + +A   +LWH RLGHPS  R+  +   S L   + ET++  C 
Sbjct: 552  LHTSSTTISLPSKFCTTLSATTFDLWHHRLGHPSDIRVHSIDKSSELKFSTSETSSISCP 611

Query: 1061 VCPLAKQRKLPYPXXXXXXXSPFDMIHCDVWGPFSPETVDGFRYFLTIVDDNSRFTWVYL 882
            VCPLAKQR+L +P        PF+++H DVWGP S  + DG R+FL+IVDD SR TWVYL
Sbjct: 612  VCPLAKQRRLSFPVSSHVSKFPFELLHVDVWGPCSEISTDGHRFFLSIVDDYSRCTWVYL 671

Query: 881  LKQKSDVCKVFTAFYNLVSTQFGIKIKCIRCDNAPEFGLNNFYDEHGIMVQHSCVENPQQ 702
            LK KSDV + F  F + V  QF   IKC+R DNAPE G  + + + GI+ Q SC   PQQ
Sbjct: 672  LKSKSDVLQKFPEFVSFVENQFNASIKCVRSDNAPELGFKSLFAKKGILHQFSCPYTPQQ 731

Query: 701  NGRVERKHQHLLNVARSLLFQSKIPIQYWGDCVLTSTYLINRIPTPLLNHKTPFEILFKK 522
            N  VERKHQH+LNVAR+LLFQS +P+ +WGDC+LTS YLINR P+PLL +KTPFE+L   
Sbjct: 732  NSIVERKHQHILNVARALLFQSNVPLAFWGDCILTSVYLINRTPSPLLQNKTPFELLTGC 791

Query: 521  QPNYKHLKVFGCLCYGSTLDRTRHKFSPRASKSVFLGYPSGYKGYKLLELESNRVYISRN 342
             P+Y HL+VFGCLCY STL + RHKF+PRA  +VFLGYP G KGYK+L+L SN V ISRN
Sbjct: 792  SPSYSHLRVFGCLCYVSTLTKDRHKFNPRAMSAVFLGYPHGVKGYKVLDLHSNAVLISRN 851

Query: 341  VV-XXXXXXXXXXXXXXXXXXXXXXFVLPHSAPDVS--NIPSPASTAP------------ 207
            VV                        V P     +S  N+ S ++ +P            
Sbjct: 852  VVFHETTFPFKSFPQSQPALDPFPQSVSPFFYESISPQNLSSSSALSPVSQEFPTDPISS 911

Query: 206  ------------------HRRSQRLIRPPSHLSDYVC-------TSSTNAC--YPVSAII 108
                                R QR  + P++LSDY C       T   N    YP+SA +
Sbjct: 912  LGSSETDSSGFVTSSSAHVTRPQRQSKTPAYLSDYHCYLISHNSTPHPNPVTPYPLSACL 971

Query: 107  NYTRLSPSHRSYISALNKIVEPATYSQASALPEWR 3
             Y  LSPS+R++   +    EP +Y+QA+    WR
Sbjct: 972  TYDLLSPSYRTFALNITTAPEPQSYTQAAKFESWR 1006



 Score = 73.6 bits (179), Expect = 6e-10
 Identities = 59/208 (28%), Positives = 88/208 (42%), Gaps = 19/208 (9%)
 Frame = -3

Query: 1924 CSHCGRNNHTVETCYKLHGYPPGYGKNRSNGQS-------KNYGQAKPRGHVNQIXXXXX 1766
            C+HCG   H V  C++LHGYPPG+ K+  N  S       K+    K +  VN +     
Sbjct: 304  CTHCGMTGHVVSRCFRLHGYPPGH-KSHPNWNSRSGPPRPKSQSLEKAQNQVNLVDVGSA 362

Query: 1765 XXXXXXXXXXL-------TMEQCQQLLTFLNSQM--QQHTSLHTN---PQPXXXXXXXXX 1622
                      +       T+ Q   LL+ L SQ   Q   SL +N   P P         
Sbjct: 363  SNAALAVAQSVDGNTGQNTLAQVHSLLSQLLSQHKGQGSVSLDSNFAVPSPPSPGISLVT 422

Query: 1621 XXXSHLVCSASFIPNKIVKSSWVIDTGATHHVACSLDTLHSSKLVTDVCVTLPNGHNIQV 1442
                    S    P  +    W++DTGA+ HV C+L        +  V V+LPNG +++V
Sbjct: 423  YPLLTTSPSNITFPTAV----WILDTGASTHVCCNLGLFSEVHDIPVVSVSLPNGSSLKV 478

Query: 1441 DRVGEVRLGNGLI*GTSY*FIVFISTFY 1358
             + G V L + +   +    ++FI TF+
Sbjct: 479  TQAGTVLLSSSITLSS----VLFIPTFH 502


>gb|AAG10817.1|AC011808_5 Putative retroelement polyprotein [Arabidopsis thaliana]
          Length = 1413

 Score =  383 bits (984), Expect(2) = e-117
 Identities = 204/480 (42%), Positives = 271/480 (56%), Gaps = 14/480 (2%)
 Frame = -2

Query: 1403 LRNVLLIHSFHFNLLSISSLTQDHDYAVTFRANVCFIQDNSQGKMIGMGKRCDKLYVMDL 1224
            L+NVL I  F  NLLS+S+LT D    V F    C + D ++G  IG     D L     
Sbjct: 499  LKNVLYIPEFRLNLLSVSALTTDIGARVVFDPTCCVVHDLTKGSTIGSDLLTDVL----- 553

Query: 1223 SSPFSSAIGHASGHHKSATANLWHCRLGHPSFSRMELLKSVLSLDSVETNTPCNVCPLAK 1044
                        G  K+    L HC                            ++C  AK
Sbjct: 554  ------------GIFKTKNKGLLHC----------------------------DICQRAK 573

Query: 1043 QRKLPYPXXXXXXXSPFDMIHCDVWGPFSPETVDGFRYFLTIVDDNSRFTWVYLLKQKSD 864
            Q+KL YP       +PFD++H DVWGPFS  T +G+ YFLTIVDD++R TWVYL+K KSD
Sbjct: 574  QKKLTYPSRHNICLAPFDLLHIDVWGPFSEPTQEGYHYFLTIVDDHTRVTWVYLMKYKSD 633

Query: 863  VCKVFTAFYNLVSTQFGIKIKCIRCDNAPEFGLNNFYDEHGIMVQHSCVENPQQNGRVER 684
            V  +F  F  +V TQ+  K+K +R DNAPE      Y   GI+  HSC E P+QN  VER
Sbjct: 634  VLTIFPDFITMVETQYDTKVKAVRSDNAPELKFEELYRRKGIVAYHSCPETPEQNSVVER 693

Query: 683  KHQHLLNVARSLLFQSKIPIQYWGDCVLTSTYLINRIPTPLLNHKTPFEILFKKQPNYKH 504
            KHQH+LNVAR+LLFQS+IP+ YWGDC+LT+ ++INR P+P++++KT FE+L KK P+Y H
Sbjct: 694  KHQHILNVARALLFQSQIPLSYWGDCILTAVFIINRTPSPVISNKTLFEMLTKKVPDYTH 753

Query: 503  LKVFGCLCYGSTLDRTRHKFSPRASKSVFLGYPSGYKGYKLLELESNRVYISRNVV---- 336
            LK FGCLCY ST  + RHKF  RA    FLGYPSGYKGYKLL+LES+ ++ISRNVV    
Sbjct: 754  LKSFGCLCYASTSPKQRHKFEDRARTCAFLGYPSGYKGYKLLDLESHTIFISRNVVFYED 813

Query: 335  ---------XXXXXXXXXXXXXXXXXXXXXXFVLPHSAPDVSNIPSPASTAPHRRSQRLI 183
                                             LP      SN+P+       +++ R+ 
Sbjct: 814  LFPFKTKPAENEESSVFFPHIYVDRNDSHPSQPLPVQETSASNVPA------EKQNSRVS 867

Query: 182  RPPSHLSDYVCTSSTNAC-YPVSAIINYTRLSPSHRSYISALNKIVEPATYSQASALPEW 6
            RPP++L DY C S T++  +P+S +++Y+ LS  +  +I+A+NKI EP TY+QA  + EW
Sbjct: 868  RPPAYLKDYHCNSVTSSTDHPISEVLSYSSLSDPYMIFINAVNKIPEPHTYAQARQIKEW 927



 Score = 69.7 bits (169), Expect(2) = e-117
 Identities = 56/188 (29%), Positives = 78/188 (41%), Gaps = 14/188 (7%)
 Frame = -3

Query: 1924 CSHCGRNNHTVETCYKLHGYPPGYGKNRS----NGQSKNYGQA-KPRGHVN-QIXXXXXX 1763
            CSH G   HT E CYKLHGYP G+ K +S      Q+    QA KP   V  Q+      
Sbjct: 312  CSHYGYTGHTSERCYKLHGYPVGWKKGKSFYEKIAQASQSSQAPKPNSAVTAQVTGNSQN 371

Query: 1762 XXXXXXXXXLTM--EQCQQLLTFLNSQMQQHTSLHTNPQPXXXXXXXXXXXXSHLVCSAS 1589
                       M  +Q Q L+   +SQ+Q  + +  N  P            +    + S
Sbjct: 372  TPAGLESLIGNMSKDQIQNLIALFSSQLQPASPV-LNTAPMSTSHNNDPSGITFSSSTFS 430

Query: 1588 FI------PNKIVKSSWVIDTGATHHVACSLDTLHSSKLVTDVCVTLPNGHNIQVDRVGE 1427
            FI        ++   +W++D+GATHHV    D   +        V LP G  I+V  VG 
Sbjct: 431  FIGILTVSETEMTHGTWIVDSGATHHVCHVKDMFLNLDTSVQHHVNLPTGTTIRVGGVGN 490

Query: 1426 VRLGNGLI 1403
            + +   LI
Sbjct: 491  IAVNADLI 498


>ref|XP_010526684.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
            1-94 isoform X6 [Tarenaya hassleriana]
          Length = 789

 Score =  376 bits (966), Expect = e-117
 Identities = 211/479 (44%), Positives = 276/479 (57%), Gaps = 48/479 (10%)
 Frame = -2

Query: 1295 IQDNSQGKMIGMGKRCDKLYVMDLSSPFSSAIGHASGHHKSATA---NLWHCRLGHPSFS 1125
            +QD ++G MIG GK+   LY++++    S+ I   S    + +A   +LWH RLGHPS  
Sbjct: 42   LQDLTRGLMIGKGKQLHNLYILEMLHTSSTTISLPSKFCTTLSATTFDLWHHRLGHPSDI 101

Query: 1124 RMELL--KSVLSLDSVETNT-PCNVCPLAKQRKLPYPXXXXXXXSPFDMIHCDVWGPFSP 954
            R+  +   S L   + ET++  C VCPLAKQR+L +P        PF+++H DVWGP S 
Sbjct: 102  RVHSIDKSSELKFSTSETSSISCPVCPLAKQRRLSFPVSSHVSKFPFELLHVDVWGPCSE 161

Query: 953  ETVDGFRYFLTIVDDNSRFTWVYLLKQKSDVCKVFTAFYNLVSTQFGIKIKCIRCDNAPE 774
             + DG R+FL+IVDD SR TWVYLLK KSDV + F  F + V  QF   IKC+R DNAPE
Sbjct: 162  ISTDGHRFFLSIVDDYSRCTWVYLLKSKSDVLQKFPEFVSFVENQFNASIKCVRSDNAPE 221

Query: 773  FGLNNFYDEHGIMVQHSCVENPQQNGRVERKHQHLLNVARSLLFQSKIPIQYWGDCVLTS 594
             G  + + + GI+ Q SC   PQQN  VERKHQH+LNVAR+LLFQS +P+ +WGDC+LTS
Sbjct: 222  LGFKSLFAKKGILHQFSCPYTPQQNSIVERKHQHILNVARALLFQSNVPLAFWGDCILTS 281

Query: 593  TYLINRIPTPLLNHKTPFEILFKKQPNYKHLKVFGCLCYGSTLDRTRHKFSPRASKSVFL 414
             YLINR P+PLL +KTPFE+L    P+Y HL+VFGCLCY STL + RHKF+PRA  +VFL
Sbjct: 282  VYLINRTPSPLLQNKTPFELLTGCSPSYSHLRVFGCLCYVSTLTKDRHKFNPRAMSAVFL 341

Query: 413  GYPSGYKGYKLLELESNRVYISRNVV-XXXXXXXXXXXXXXXXXXXXXXFVLPHSAPDVS 237
            GYP G KGYK+L+L SN V ISRNVV                        V P     +S
Sbjct: 342  GYPHGVKGYKVLDLHSNAVLISRNVVFHETTFPFKSFPQSQPALDPFPQSVSPFFYESIS 401

Query: 236  --NIPSPASTAP------------------------------HRRSQRLIRPPSHLSDYV 153
              N+ S ++ +P                                R QR  + P++LSDY 
Sbjct: 402  PQNLSSSSALSPVSQEFPTDPISSLGSSETDSSGFVTSSSAHVTRPQRQSKTPAYLSDYH 461

Query: 152  C-------TSSTNAC--YPVSAIINYTRLSPSHRSYISALNKIVEPATYSQASALPEWR 3
            C       T   N    YP+SA + Y  LSPS+R++   +    EP +Y+QA+    WR
Sbjct: 462  CYLISHNSTPHPNPVTPYPLSACLTYDLLSPSYRTFALNITTAPEPQSYTQAAKFESWR 520


>ref|XP_010495376.1| PREDICTED: uncharacterized protein LOC104772464 [Camelina sativa]
          Length = 1032

 Score =  382 bits (982), Expect = e-117
 Identities = 186/357 (52%), Positives = 248/357 (69%), Gaps = 1/357 (0%)
 Frame = -2

Query: 1403 LRNVLLIHSFHFNLLSISSLTQDHDYAVTFRANVCFIQDNSQGKMIGMGKRCDKLYVMDL 1224
            L NVL + SF FN++S+SSL     Y+  F    C+IQ++ QG MIG G     LY+   
Sbjct: 527  LHNVLHVPSFKFNIISVSSLLNHDQYSAHFFPFYCYIQESIQGLMIGRGNLMHNLYIYSN 586

Query: 1223 SSPFSSAIGHASGHHKSATANLWHCRLGHPSFSRMELLKSVLSLDS-VETNTPCNVCPLA 1047
              PFS++  H +G  K     LWH RLGHPS  +++ +  + SL S + + +PC+VCPLA
Sbjct: 587  DRPFSASQSHFTGSLK-VDGLLWHQRLGHPSSDKLKHIPGISSLSSSLLSESPCSVCPLA 645

Query: 1046 KQRKLPYPXXXXXXXSPFDMIHCDVWGPFSPETVDGFRYFLTIVDDNSRFTWVYLLKQKS 867
            KQ++L +        +PFD++H D+WGPF+ E+V+G++YFLTIVDD SR TWVYLL  KS
Sbjct: 646  KQKRLSFESNGHRSTTPFDLVHLDIWGPFAVESVEGYKYFLTIVDDYSRVTWVYLLHNKS 705

Query: 866  DVCKVFTAFYNLVSTQFGIKIKCIRCDNAPEFGLNNFYDEHGIMVQHSCVENPQQNGRVE 687
            +V   F  F  LV TQ+  K+K IR DNAPE    +  ++HGI+ Q+SC   PQQN  VE
Sbjct: 706  EVSVKFPLFLKLVETQYHTKVKKIRTDNAPELAFTDLVNKHGIIHQYSCAYTPQQNSVVE 765

Query: 686  RKHQHLLNVARSLLFQSKIPIQYWGDCVLTSTYLINRIPTPLLNHKTPFEILFKKQPNYK 507
            RKHQHLLNVARSLLFQS +P+ YW DC+LT+ +LINR P+ +LN+ T +E+L KK+P+Y 
Sbjct: 766  RKHQHLLNVARSLLFQSNVPLIYWTDCLLTAVFLINRTPSTVLNNLTSYELLTKKKPDYS 825

Query: 506  HLKVFGCLCYGSTLDRTRHKFSPRASKSVFLGYPSGYKGYKLLELESNRVYISRNVV 336
             LK FGCLC+ STL + RHKFSPRA++ VFLGY  GYKGYK+L L++N V +SRNV+
Sbjct: 826  FLKSFGCLCFVSTLQKDRHKFSPRATECVFLGYSFGYKGYKVLHLDTNVVSVSRNVI 882


>gb|KYP69518.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 731

 Score =  374 bits (960), Expect = e-117
 Identities = 199/492 (40%), Positives = 272/492 (55%), Gaps = 25/492 (5%)
 Frame = -2

Query: 1403 LRNVLLIHSFHFNLLSISSLTQDHDYAVTFRANVCFIQDNSQGKMIGMGKRCDKLYVMDL 1224
            L NVL I  F FNLLS+ +L  ++ +  T  +N   +QD    + IG  K+   L V + 
Sbjct: 64   LHNVLYIPMFRFNLLSLLTLINNNPFRFTMESNSFLLQDLKTLRTIGTTKQQQGLLVFEF 123

Query: 1223 SSPFSSAIGHASGHHKSATANLWHCRLGHPSFSRMELLKSVLSLDSVETNTPCNVCPLAK 1044
              P  +       +  S T   WH RLGH   S  +L+ + + L S+++   C+ C +AK
Sbjct: 124  --PKRNFNSDCISNCNSVTYETWHKRLGHIPISVYKLIANKIKLSSIDSTYHCSTCNIAK 181

Query: 1043 QRKLPYPXXXXXXXSPFDMIHCDVWGPFSPETVDGFRYFLTIVDDNSRFTWVYLLKQKSD 864
            Q +LP+P       S FD+IH D+WGPF   T DGFRYFLT+VDD SRFTW+Y+L+ KSD
Sbjct: 182  QNRLPFPNPNKFSPSCFDLIHADIWGPFKQPTYDGFRYFLTLVDDKSRFTWIYMLQNKSD 241

Query: 863  VCKVFTAFYNLVSTQFGIKIKCIRCDNAPEFGLNNFYDEHGIMVQHSCVENPQQNGRVER 684
              K     +  V  QF  KIK  R DN  E    +F+ E G++ Q  CVE P+QN  VER
Sbjct: 242  CIKNIPQIFAYVENQFQTKIKSFRSDNVRELHFKDFFLEKGVLHQFLCVERPKQNSVVER 301

Query: 683  KHQHLLNVARSLLFQSKIPIQYWGDCVLTSTYLINRIPTPLLNHKTPFEILFKKQPNYKH 504
            KH H+LN+AR+L+FQS +PI+ WGD V T  +++NR P+P+LNH +P+EIL+ K PNY  
Sbjct: 302  KHLHILNIARTLMFQSNVPIKIWGDYVKTVVFIMNRTPSPILNHISPYEILYNKVPNYSD 361

Query: 503  LKVFGCLCYGSTLDRTRHKFSPRASKSVFLGYPSGYKGYKLLELESNRVYISRNVVXXXX 324
             + FG LCY STL   RHKFSPRA  +VF+GYP GYKGYKL +L +++ +IS++V     
Sbjct: 362  FRTFGTLCYASTLLSGRHKFSPRAIAAVFIGYPHGYKGYKLFDLTTHQTFISKDVKFYEH 421

Query: 323  XXXXXXXXXXXXXXXXXXFVL------PHSAPDVSNI----------------PSPASTA 210
                                +      P +  D   I                P+    A
Sbjct: 422  IFPFQNSNSSDRGHGVFNDQITPNLNHPATFDDSDPIQPTHTQNQFTIQQLSPPNEPDQA 481

Query: 209  PHRRSQRLIRPPSHLSDYVC---TSSTNACYPVSAIINYTRLSPSHRSYISALNKIVEPA 39
            P RRS R + PP +LSDY C   T++T   YP+   I+Y++LS +H  YI  +    EP 
Sbjct: 482  PIRRSNRAVNPPGYLSDYHCYNVTTNTQTLYPIQKFIDYSKLSKTHNHYICQIFANHEPQ 541

Query: 38   TYSQASALPEWR 3
            TY QA   P W+
Sbjct: 542  TYKQAIKFPHWK 553


>ref|XP_010526683.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
            1-94 isoform X5 [Tarenaya hassleriana]
          Length = 886

 Score =  376 bits (966), Expect = e-116
 Identities = 211/479 (44%), Positives = 276/479 (57%), Gaps = 48/479 (10%)
 Frame = -2

Query: 1295 IQDNSQGKMIGMGKRCDKLYVMDLSSPFSSAIGHASGHHKSATA---NLWHCRLGHPSFS 1125
            +QD ++G MIG GK+   LY++++    S+ I   S    + +A   +LWH RLGHPS  
Sbjct: 139  LQDLTRGLMIGKGKQLHNLYILEMLHTSSTTISLPSKFCTTLSATTFDLWHHRLGHPSDI 198

Query: 1124 RMELL--KSVLSLDSVETNT-PCNVCPLAKQRKLPYPXXXXXXXSPFDMIHCDVWGPFSP 954
            R+  +   S L   + ET++  C VCPLAKQR+L +P        PF+++H DVWGP S 
Sbjct: 199  RVHSIDKSSELKFSTSETSSISCPVCPLAKQRRLSFPVSSHVSKFPFELLHVDVWGPCSE 258

Query: 953  ETVDGFRYFLTIVDDNSRFTWVYLLKQKSDVCKVFTAFYNLVSTQFGIKIKCIRCDNAPE 774
             + DG R+FL+IVDD SR TWVYLLK KSDV + F  F + V  QF   IKC+R DNAPE
Sbjct: 259  ISTDGHRFFLSIVDDYSRCTWVYLLKSKSDVLQKFPEFVSFVENQFNASIKCVRSDNAPE 318

Query: 773  FGLNNFYDEHGIMVQHSCVENPQQNGRVERKHQHLLNVARSLLFQSKIPIQYWGDCVLTS 594
             G  + + + GI+ Q SC   PQQN  VERKHQH+LNVAR+LLFQS +P+ +WGDC+LTS
Sbjct: 319  LGFKSLFAKKGILHQFSCPYTPQQNSIVERKHQHILNVARALLFQSNVPLAFWGDCILTS 378

Query: 593  TYLINRIPTPLLNHKTPFEILFKKQPNYKHLKVFGCLCYGSTLDRTRHKFSPRASKSVFL 414
             YLINR P+PLL +KTPFE+L    P+Y HL+VFGCLCY STL + RHKF+PRA  +VFL
Sbjct: 379  VYLINRTPSPLLQNKTPFELLTGCSPSYSHLRVFGCLCYVSTLTKDRHKFNPRAMSAVFL 438

Query: 413  GYPSGYKGYKLLELESNRVYISRNVV-XXXXXXXXXXXXXXXXXXXXXXFVLPHSAPDVS 237
            GYP G KGYK+L+L SN V ISRNVV                        V P     +S
Sbjct: 439  GYPHGVKGYKVLDLHSNAVLISRNVVFHETTFPFKSFPQSQPALDPFPQSVSPFFYESIS 498

Query: 236  --NIPSPASTAP------------------------------HRRSQRLIRPPSHLSDYV 153
              N+ S ++ +P                                R QR  + P++LSDY 
Sbjct: 499  PQNLSSSSALSPVSQEFPTDPISSLGSSETDSSGFVTSSSAHVTRPQRQSKTPAYLSDYH 558

Query: 152  C-------TSSTNAC--YPVSAIINYTRLSPSHRSYISALNKIVEPATYSQASALPEWR 3
            C       T   N    YP+SA + Y  LSPS+R++   +    EP +Y+QA+    WR
Sbjct: 559  CYLISHNSTPHPNPVTPYPLSACLTYDLLSPSYRTFALNITTAPEPQSYTQAAKFESWR 617


>ref|XP_009109940.1| PREDICTED: uncharacterized protein LOC103835509 [Brassica rapa]
          Length = 944

 Score =  375 bits (962), Expect = e-115
 Identities = 195/428 (45%), Positives = 269/428 (62%), Gaps = 11/428 (2%)
 Frame = -2

Query: 1403 LRNVLLIHSFHFNLLSISSLTQDHDYAVTFRANVCFIQDNSQGKMIGMGKRCDKLYVMDL 1224
            L +VL + SF FNL+S+S+L +    +  F    C+IQ+ SQG  IG G     LY++DL
Sbjct: 509  LYDVLHVPSFFFNLVSVSALLRSSQCSAHFFPTSCYIQEFSQGLTIGKGSLKHNLYILDL 568

Query: 1223 SSPFSSAIGHASGHHKSATANLWHCRLGHPSFSRMELLKSVLSLDS--VETNTPCNVCPL 1050
                 SA    S    SA   LWH RLGHPS +++++L + LS+    + +++ C VCPL
Sbjct: 569  IPQDISAAFTGS---LSADGMLWHQRLGHPSPAKLQVLSTELSIPRCIIPSHSTCTVCPL 625

Query: 1049 AKQRKLPYPXXXXXXXSPFDMIHCDVWGPFSPETVDGFRYFLTIVDDNSRFTWVYLLKQK 870
            AKQ++L +P        PFD+ H D+WGPF+ E+++G++YFLTIVDD SR TW++LLK+K
Sbjct: 626  AKQKRLSFPFNNNLSLKPFDLHHLDIWGPFAQESIEGYKYFLTIVDDCSRVTWIHLLKRK 685

Query: 869  SDVCKVFTAFYNLVSTQFGIKIKCIRCDNAPEFGLNNFYDEHGIMVQHSCVENPQQNGRV 690
            SDV  +F  F   V TQ+ +++K IR DNAPE         HG++   SC   P+QN  V
Sbjct: 686  SDVITLFPEFLQRVYTQYNVRVKAIRSDNAPELRFAELIKTHGMIHYFSCAYTPEQNSVV 745

Query: 689  ERKHQHLLNVARSLLFQSKIPIQYWGDCVLTSTYLINRIPTPLLNHKTPFEILFKKQPNY 510
            ERKHQHLLNVAR+LLFQS +P+ YW DC+ TS +LINR P+PLL+H+TP+E+L K++P+Y
Sbjct: 746  ERKHQHLLNVARALLFQSNVPLLYWSDCITTSVFLINRTPSPLLDHRTPYEVLLKRKPDY 805

Query: 509  KHLKVFGCLCYGSTLDRTRHKFSPRASKSVFLGYPSGYKGYKLLELESNRVYISRNVVXX 330
              L+ FGCLCY STL + R+KFSPRA   +FLGYPSGYKGYKLL+L++N V ISR+VV  
Sbjct: 806  SLLRSFGCLCYVSTLQKDRNKFSPRARPCLFLGYPSGYKGYKLLDLDNNSVSISRHVV-F 864

Query: 329  XXXXXXXXXXXXXXXXXXXXFVLPHSAP---------DVSNIPSPASTAPHRRSQRLIRP 177
                                ++LP+S P         D +   S +S+ PH     ++ P
Sbjct: 865  HESVYPLKSSTSIIPDFFSHYILPNSVPYTADLDASIDHNTSSSTSSSHPHAPDPIVLVP 924

Query: 176  PSHLSDYV 153
             +  S YV
Sbjct: 925  HASHSRYV 932


>ref|XP_013594438.1| PREDICTED: uncharacterized protein LOC106302482 [Brassica oleracea
            var. oleracea]
          Length = 977

 Score =  374 bits (961), Expect = e-114
 Identities = 181/358 (50%), Positives = 250/358 (69%), Gaps = 2/358 (0%)
 Frame = -2

Query: 1403 LRNVLLIHSFHFNLLSISSLTQDHDYAVTFRANVCFIQDNSQGKMIGMGKRCDKLYVMDL 1224
            L +VL + SF FNL+S+S+L + +  +  F    C+IQ+ SQG  IG G     LY++DL
Sbjct: 509  LYDVLHVPSFFFNLVSVSALLRSNQCSAHFFPTSCYIQEFSQGLTIGKGSLKHNLYILDL 568

Query: 1223 SSPFSSAIGHASGHHKSATANLWHCRLGHPSFSRMELLKSVLSLDS--VETNTPCNVCPL 1050
                 SA    S    SA   LWH RLGHPS +++++L + LS+    + +++ C VCPL
Sbjct: 569  IPQDISAAFTGS---LSADGMLWHQRLGHPSPAKLQVLSTELSIPRCIIPSHSTCTVCPL 625

Query: 1049 AKQRKLPYPXXXXXXXSPFDMIHCDVWGPFSPETVDGFRYFLTIVDDNSRFTWVYLLKQK 870
            AKQ++L +P        PFD++H D+WGPF+ E+++G++YFLTIVDD SR TW++LLK+K
Sbjct: 626  AKQKRLSFPFNNNLSLKPFDLLHLDIWGPFAQESIEGYKYFLTIVDDCSRVTWIHLLKRK 685

Query: 869  SDVCKVFTAFYNLVSTQFGIKIKCIRCDNAPEFGLNNFYDEHGIMVQHSCVENPQQNGRV 690
            SDV  +F  F   V TQ+ +++K IR DNAPE         +G++   SC   P+QN  V
Sbjct: 686  SDVITLFPEFLQRVYTQYNVRVKAIRSDNAPELRFAKLIKTNGMIHYFSCAYTPEQNSVV 745

Query: 689  ERKHQHLLNVARSLLFQSKIPIQYWGDCVLTSTYLINRIPTPLLNHKTPFEILFKKQPNY 510
            ERKHQHLLNVAR+LLFQS +P+ YW DC+ T+ +LINRIP+PLL+H+TP+E+L K++P+Y
Sbjct: 746  ERKHQHLLNVARALLFQSNVPLLYWSDCITTAVFLINRIPSPLLDHRTPYEVLLKRKPDY 805

Query: 509  KHLKVFGCLCYGSTLDRTRHKFSPRASKSVFLGYPSGYKGYKLLELESNRVYISRNVV 336
              L+ FGCLCY STL + R+KFSPRA   +FLGYPSGYKGYKLL+L++N V ISR+VV
Sbjct: 806  SLLRSFGCLCYVSTLQKDRNKFSPRARPCLFLGYPSGYKGYKLLDLDNNSVSISRHVV 863


>gb|AAF79879.1|AC000348_32 T7N9.5 [Arabidopsis thaliana]
          Length = 1436

 Score =  379 bits (972), Expect = e-113
 Identities = 205/493 (41%), Positives = 287/493 (58%), Gaps = 27/493 (5%)
 Frame = -2

Query: 1403 LRNVLLIHSFHFNLLSISSLTQDHDYAVTFRANVCFIQDNSQGKMIGMGKRCDKLYVMDL 1224
            L NVL I  F FNLLS+S LT+     V+F ++ C IQ  ++  M+G G +   LY+++L
Sbjct: 473  LHNVLFIPEFKFNLLSVSVLTKTLQSKVSFTSDECMIQALTKELMLGKGSQVGNLYILNL 532

Query: 1223 SSPF---SSAIGHASGHHKSATANLWHCRLGHPSFSRMELLKSVLSLDSVETN---TPCN 1062
                   SS  G +        + +WH RLGHPSF++++ L  VL L   + N   + C+
Sbjct: 533  DKSLVDVSSFPGKSVCSSVKNESEMWHKRLGHPSFAKIDTLSDVLMLPKQKINKDSSHCH 592

Query: 1061 VCPLAKQRKLPYPXXXXXXXSPFDMIHCDVWGPFSPETVDGFRYFLTIVDDNSRFTWVYL 882
            VC L+KQ+ LP+          F+++H D WGPFS  TVD +RYFLTIVDD SR TW+YL
Sbjct: 593  VCHLSKQKHLPFKSVNHIREKAFELVHIDTWGPFSVPTVDSYRYFLTIVDDFSRATWIYL 652

Query: 881  LKQKSDVCKVFTAFYNLVSTQFGIKIKCIRCDNAPEFGLNNFYDEHGIMVQHSCVENPQQ 702
            LKQKSDV  VF +F  +V TQ+  K+  +R DNA E   N  + + GI   H C E P+Q
Sbjct: 653  LKQKSDVLTVFPSFLKMVETQYHTKVCSVRSDNAHELKFNELFAKEGIKADHPCPETPEQ 712

Query: 701  NGRVERKHQHLLNVARSLLFQSKIPIQYWGDCVLTSTYLINRIPTPLLNHKTPFEILFKK 522
            N  VERKHQHLLNVAR+L+FQS IP++YWGDCVLT+ +LINR+ +P++N++TP+E L K 
Sbjct: 713  NFVVERKHQHLLNVARALMFQSGIPLEYWGDCVLTAVFLINRLLSPVINNETPYERLTKG 772

Query: 521  QPNYKHLKVFGCLCYGSTLDRTRHKFSPRASKSVFLGYPSGYKGYKLLELESNRVYISRN 342
            +P+Y  LK FGCLCY ST  ++R KF PRA   +FLGYP GYKGYKLL++E+  V ISR+
Sbjct: 773  KPDYSSLKAFGCLCYCSTSPKSRTKFDPRAKACIFLGYPMGYKGYKLLDIETYSVSISRH 832

Query: 341  VVXXXXXXXXXXXXXXXXXXXXXXFVLPHSAPDVSNIP--SPASTAPHR----------- 201
            V+                       +   +  +  ++P    +S APH            
Sbjct: 833  VIFYEDIFPFASSNITDAAKDFFPHIYLPAPNNDEHLPLVQSSSDAPHNHDESSSMIFVP 892

Query: 200  ---RSQRLIRPPSHLSDYVC-----TSSTNACYPVSAIINYTRLSPSHRSYISALNKIVE 45
               +S R  + PSHL D+ C     T++  + YP++  I+Y+ LS    ++I+ +     
Sbjct: 893  SEPKSTRQRKLPSHLQDFHCYNNTPTTTKTSPYPLTNYISYSYLSEPFGAFINIITATKL 952

Query: 44   PATYSQASALPEW 6
            P  YS+A     W
Sbjct: 953  PQKYSEARLDKVW 965