BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia27_contig00025015
         (3303 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP54650.1| Retrovirus-related Pol polyprotein from transposo...   118   3e-41
gb|KYP64290.1| Retrovirus-related Pol polyprotein from transposo...   128   2e-39
gb|KYP64289.1| Retrovirus-related Pol polyprotein from transposo...   128   5e-38
gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris]               124   1e-37
gb|KYP54652.1| Retrovirus-related Pol polyprotein from transposo...   126   2e-37
gb|KYP36589.1| Retrovirus-related Pol polyprotein from transposo...   124   1e-36
gb|KYP65229.1| Retrovirus-related Pol polyprotein from transposo...   126   3e-36
emb|CAN73119.1| hypothetical protein VITISV_020442 [Vitis vinifera]   118   1e-34
gb|AAP94586.1| putative retrotransposon RIRE1 poly protein [Zea ...    99   1e-33
emb|CAN76535.1| hypothetical protein VITISV_034845 [Vitis vinifera]   116   1e-33
gb|KYP59837.1| Retrovirus-related Pol polyprotein from transposo...   119   1e-32
emb|CAN72171.1| hypothetical protein VITISV_036207 [Vitis vinifera]   107   2e-31
gb|KYP73716.1| Retrovirus-related Pol polyprotein from transposo...   107   5e-31
ref|XP_008363252.1| PREDICTED: LOW QUALITY PROTEIN: uncharacteri...   112   8e-31
emb|CAN68532.1| hypothetical protein VITISV_032270 [Vitis vinifera]   102   6e-30
emb|CAN72674.1| hypothetical protein VITISV_020404 [Vitis vinifera]   109   6e-30
gb|KYP46750.1| Retrovirus-related Pol polyprotein from transposo...   103   1e-29
ref|XP_008387315.1| PREDICTED: uncharacterized protein LOC103449...   108   2e-29
gb|AAK73108.1|AF391808_10 Fourf gag/pol protein [Zea mays] gi|16...   105   5e-29
emb|CAN83343.1| hypothetical protein VITISV_042274 [Vitis vinifera]   100   7e-29

>gb|KYP54650.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 236

 Score =  118 bits (295), Expect(4) = 3e-41
 Identities = 60/114 (52%), Positives = 77/114 (67%)
 Frame = +3

Query: 2937 YIYNPNCDHWTVLVRLMKYLRSTMNYGILYSGFSLCIRVIGDDN*ISDSDEIKSTSGYIF 3116
            Y ++PN +HW  L RLM+YLR TM+YGI YSGF + +    D N IS+ DE KS+SGY+F
Sbjct: 96   YTHSPNQNHWEALARLMRYLRGTMDYGIEYSGFLVVLEGHSDANWISNLDETKSSSGYVF 155

Query: 3117 TFGGGEIIWKSTKQTSIAKSTMEFVFVGLDSWS*TGNVAEWLRNFLA*CYVGFK 3278
            T GGG I W+S +++ IA+STME  FV L+    T   AEWLRNFL    +G K
Sbjct: 156  TLGGGAIAWRSVRKSIIARSTMESEFVALEM---TRTEAEWLRNFLVNIPLGMK 206



 Score = 52.8 bits (125), Expect(4) = 3e-41
 Identities = 29/56 (51%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
 Frame = +2

Query: 2759 KKFGHFNVKPVSA-YDGNTQLKKNLGDHVAQFECAQIVGSMLHLMNIS*LDIVYFV 2923
            KKF +++ K V+  Y+ N+QLK+N GD+ AQ   AQI+GS+LHLMN S   I Y V
Sbjct: 35   KKFDYYDCKFVTTPYNVNSQLKQNKGDYFAQSRYAQIIGSLLHLMNFSRPHIGYVV 90



 Score = 48.9 bits (115), Expect(4) = 3e-41
 Identities = 23/43 (53%), Positives = 33/43 (76%)
 Frame = +1

Query: 2620 VRDMGEASVILSVKIIRKDDIIMLS*ELYAEKLF*KFGHFNVK 2748
            ++DMGEASVIL VK+++K D I+LS   Y E+LF KF +++ K
Sbjct: 1    MKDMGEASVILGVKVVKKGDSILLSQGHYVERLFKKFDYYDCK 43



 Score = 21.2 bits (43), Expect(4) = 3e-41
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 3259 DVMLDSKPTPSVFMH 3303
            ++ L  KPTPSV +H
Sbjct: 200  NIPLGMKPTPSVSIH 214


>gb|KYP64290.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1215

 Score =  128 bits (322), Expect(3) = 2e-39
 Identities = 66/114 (57%), Positives = 77/114 (67%)
 Frame = +3

Query: 2937 YIYNPNCDHWTVLVRLMKYLRSTMNYGILYSGFSLCIRVIGDDN*ISDSDEIKSTSGYIF 3116
            Y + PN DHW  L RLM+YLR TM+YGI YSGF   +    D N ISDSDE KSTSGY+F
Sbjct: 1012 YTHCPNQDHWEALARLMRYLRGTMDYGIEYSGFPAVLEGYSDANWISDSDETKSTSGYVF 1071

Query: 3117 TFGGGEIIWKSTKQTSIAKSTMEFVFVGLDSWS*TGNVAEWLRNFLA*CYVGFK 3278
            T GGG I W+S +Q+ IA+STME  FV L+    T   AEWLRNFLA   +G K
Sbjct: 1072 TLGGGAIAWRSVRQSIIARSTMESEFVALEM---TSTEAEWLRNFLANIPLGMK 1122



 Score = 64.7 bits (156), Expect(3) = 2e-39
 Identities = 37/78 (47%), Positives = 54/78 (69%), Gaps = 2/78 (2%)
 Frame = +2

Query: 2696 KNFMLRNF-FRSLGISMSKLRVKKFGHFNVKPVSA-YDGNTQLKKNLGDHVAQFECAQIV 2869
            K+F+  NF  + +G  + +L +KKF +++ K V+  YD N+QLK+N GD +AQ + AQI+
Sbjct: 930  KSFLASNFDMKDMGHYVERL-LKKFDYYDCKSVTTPYDVNSQLKQNKGDSLAQSQYAQII 988

Query: 2870 GSMLHLMNIS*LDIVYFV 2923
            GS+LHLMN S  DI Y V
Sbjct: 989  GSLLHLMNFSRPDIAYAV 1006



 Score = 21.2 bits (43), Expect(3) = 2e-39
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 3259 DVMLDSKPTPSVFMH 3303
            ++ L  KPTPSV +H
Sbjct: 1116 NIPLGMKPTPSVSIH 1130


>gb|KYP64289.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1012

 Score =  128 bits (322), Expect(3) = 5e-38
 Identities = 66/114 (57%), Positives = 77/114 (67%)
 Frame = +3

Query: 2937 YIYNPNCDHWTVLVRLMKYLRSTMNYGILYSGFSLCIRVIGDDN*ISDSDEIKSTSGYIF 3116
            Y + PN DHW  L RLM+YLR TM+YGI YSGF   +    D N ISDSDE KSTSGY+F
Sbjct: 809  YTHCPNQDHWEALARLMRYLRGTMDYGIEYSGFPAVLEGYSDANWISDSDETKSTSGYVF 868

Query: 3117 TFGGGEIIWKSTKQTSIAKSTMEFVFVGLDSWS*TGNVAEWLRNFLA*CYVGFK 3278
            T GGG I W+S +Q+ IA+STME  FV L+    T   AEWLRNFLA   +G K
Sbjct: 869  TLGGGAIAWRSVRQSIIARSTMESEFVALEM---TSTEAEWLRNFLANIPLGMK 919



 Score = 60.1 bits (144), Expect(3) = 5e-38
 Identities = 31/57 (54%), Positives = 42/57 (73%), Gaps = 1/57 (1%)
 Frame = +2

Query: 2756 VKKFGHFNVKPVSA-YDGNTQLKKNLGDHVAQFECAQIVGSMLHLMNIS*LDIVYFV 2923
            +KKF +++ K V+  YD N+QLK+N GD +AQ + AQI+GS+LHLMN S  DI Y V
Sbjct: 747  LKKFDYYDCKSVTTPYDVNSQLKQNKGDSLAQSQYAQIIGSLLHLMNFSRPDIAYAV 803



 Score = 21.2 bits (43), Expect(3) = 5e-38
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 3259 DVMLDSKPTPSVFMH 3303
            ++ L  KPTPSV +H
Sbjct: 913  NIPLGMKPTPSVSIH 927



 Score = 71.2 bits (173), Expect = 7e-09
 Identities = 41/96 (42%), Positives = 60/96 (62%), Gaps = 6/96 (6%)
 Frame = +1

Query: 2488 DRCAYTKL---DDL*VC---NKFFMWITCSHLVLKFI*YKTKELLASKFDVRDMGEASVI 2649
            D+C YTK    D + +C   +   ++ TC  +V     +KTK  LAS FD++DMGEASVI
Sbjct: 669  DKCVYTKSMNDDCVIICLYVDDMLIFGTCDDIV-----FKTKSFLASNFDMKDMGEASVI 723

Query: 2650 LSVKIIRKDDIIMLS*ELYAEKLF*KFGHFNVKTAS 2757
            L VK++RK D I+LS   Y E+L  KF +++ K+ +
Sbjct: 724  LGVKVVRKGDSILLSQGHYVERLLKKFDYYDCKSVT 759


>gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris]
          Length = 1290

 Score =  124 bits (311), Expect(3) = 1e-37
 Identities = 63/110 (57%), Positives = 75/110 (68%)
 Frame = +3

Query: 2949 PNCDHWTVLVRLMKYLRSTMNYGILYSGFSLCIRVIGDDN*ISDSDEIKSTSGYIFTFGG 3128
            P+ DHW  L RLMKYLR TM+Y I YSGF   +    D N ISDSDE KSTSGY+FT GG
Sbjct: 1091 PSQDHWEALARLMKYLRGTMDYAIEYSGFPAVLEGYSDANWISDSDETKSTSGYVFTLGG 1150

Query: 3129 GEIIWKSTKQTSIAKSTMEFVFVGLDSWS*TGNVAEWLRNFLA*CYVGFK 3278
            G + W+S +QT IA+STME  FV L+     G+ AEWL+NFLA   +G K
Sbjct: 1151 GAVTWRSARQTIIARSTMESEFVALEM---AGSEAEWLKNFLANIPLGMK 1197



 Score = 61.2 bits (147), Expect(3) = 1e-37
 Identities = 30/57 (52%), Positives = 43/57 (75%), Gaps = 1/57 (1%)
 Frame = +2

Query: 2756 VKKFGHFNVKPVSA-YDGNTQLKKNLGDHVAQFECAQIVGSMLHLMNIS*LDIVYFV 2923
            +KKFG+++ K VS  YD N++LKKN G+ ++Q + AQI+GS+LHLM+ S  DI Y V
Sbjct: 1025 LKKFGYYDFKSVSTPYDANSKLKKNRGESISQTQYAQIIGSLLHLMSFSRPDIAYAV 1081



 Score = 22.7 bits (47), Expect(3) = 1e-37
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 3259 DVMLDSKPTPSVFMH 3303
            ++ L  KPTPSV MH
Sbjct: 1191 NIPLGMKPTPSVSMH 1205



 Score = 75.5 bits (184), Expect = 4e-10
 Identities = 43/96 (44%), Positives = 64/96 (66%), Gaps = 6/96 (6%)
 Frame = +1

Query: 2488 DRCAYTKLDD---L*VC---NKFFMWITCSHLVLKFI*YKTKELLASKFDVRDMGEASVI 2649
            D+C Y++ ++   + +C   +   ++ TC+ +V     +KTK  L SKF+++DMGEASVI
Sbjct: 947  DKCVYSRSENGEYVIICLYVDDMLIFGTCNDIV-----FKTKLFLGSKFEMKDMGEASVI 1001

Query: 2650 LSVKIIRKDDIIMLS*ELYAEKLF*KFGHFNVKTAS 2757
            L VKIIRK D I+LS E Y EKL  KFG+++ K+ S
Sbjct: 1002 LGVKIIRKGDSILLSQEKYTEKLLKKFGYYDFKSVS 1037


>gb|KYP54652.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 900

 Score =  126 bits (317), Expect(3) = 2e-37
 Identities = 65/114 (57%), Positives = 76/114 (66%)
 Frame = +3

Query: 2937 YIYNPNCDHWTVLVRLMKYLRSTMNYGILYSGFSLCIRVIGDDN*ISDSDEIKSTSGYIF 3116
            Y + PN DHW  L RLM+YLR TM+YGI YSGF   +    D N ISDSDE KSTSGY+F
Sbjct: 697  YTHCPNQDHWEALARLMRYLRGTMDYGIEYSGFPAVLEGYSDANWISDSDETKSTSGYVF 756

Query: 3117 TFGGGEIIWKSTKQTSIAKSTMEFVFVGLDSWS*TGNVAEWLRNFLA*CYVGFK 3278
            T GGG I W+S +Q+ IA+STME  FV L+    T   AEWLRNFL    +G K
Sbjct: 757  TLGGGAIAWRSVRQSIIARSTMESEFVALEM---TSTEAEWLRNFLENIPLGMK 807



 Score = 60.1 bits (144), Expect(3) = 2e-37
 Identities = 31/57 (54%), Positives = 42/57 (73%), Gaps = 1/57 (1%)
 Frame = +2

Query: 2756 VKKFGHFNVKPVSA-YDGNTQLKKNLGDHVAQFECAQIVGSMLHLMNIS*LDIVYFV 2923
            +KKF +++ K V+  YD N+QLK+N GD +AQ + AQI+GS+LHLMN S  DI Y V
Sbjct: 635  LKKFDYYDCKSVTTPYDVNSQLKQNKGDSLAQSQYAQIIGSLLHLMNFSRPDIAYAV 691



 Score = 21.2 bits (43), Expect(3) = 2e-37
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 3259 DVMLDSKPTPSVFMH 3303
            ++ L  KPTPSV +H
Sbjct: 801  NIPLGMKPTPSVSIH 815



 Score = 72.4 bits (176), Expect = 3e-09
 Identities = 42/96 (43%), Positives = 60/96 (62%), Gaps = 6/96 (6%)
 Frame = +1

Query: 2488 DRCAYTKL---DDL*VC---NKFFMWITCSHLVLKFI*YKTKELLASKFDVRDMGEASVI 2649
            DRC YTK    D + +C   +   ++ TC  +V     +KTK  LAS FD++DMGEASVI
Sbjct: 557  DRCVYTKSMNDDCVIICLYVDDMLIFGTCDDIV-----FKTKSFLASNFDMKDMGEASVI 611

Query: 2650 LSVKIIRKDDIIMLS*ELYAEKLF*KFGHFNVKTAS 2757
            L VK++RK D I+LS   Y E+L  KF +++ K+ +
Sbjct: 612  LGVKVVRKGDSILLSQGHYVERLLKKFDYYDCKSVT 647


>gb|KYP36589.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 655

 Score =  124 bits (312), Expect(3) = 1e-36
 Identities = 65/114 (57%), Positives = 76/114 (66%)
 Frame = +3

Query: 2937 YIYNPNCDHWTVLVRLMKYLRSTMNYGILYSGFSLCIRVIGDDN*ISDSDEIKSTSGYIF 3116
            Y + PN DHW  L RLM+YLR TM+YGI YSGF   +    D N ISDSDE KSTS Y+F
Sbjct: 455  YTHCPNQDHWEALARLMRYLRGTMDYGIEYSGFPAVLEGYSDANWISDSDETKSTSYYVF 514

Query: 3117 TFGGGEIIWKSTKQTSIAKSTMEFVFVGLDSWS*TGNVAEWLRNFLA*CYVGFK 3278
            T GGG I W+S +Q+ IA+STME  FV L+    T   AEWLRNFLA   +G K
Sbjct: 515  TLGGGAISWRSVRQSIIARSTMESEFVALEM---TSTEAEWLRNFLANIPLGMK 565



 Score = 59.3 bits (142), Expect(3) = 1e-36
 Identities = 31/57 (54%), Positives = 42/57 (73%), Gaps = 1/57 (1%)
 Frame = +2

Query: 2756 VKKFGHFNVKPVSA-YDGNTQLKKNLGDHVAQFECAQIVGSMLHLMNIS*LDIVYFV 2923
            +KKF +++ K V+  YD N+QLK+N GD +AQ + AQI+GS+LHLMN S  DI Y V
Sbjct: 393  LKKFDYYDCKYVTTPYDVNSQLKQNKGDSLAQSQYAQIIGSLLHLMNFSRPDIAYAV 449



 Score = 21.2 bits (43), Expect(3) = 1e-36
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 3259 DVMLDSKPTPSVFMH 3303
            ++ L  KPTPSV +H
Sbjct: 559  NIPLGMKPTPSVSIH 573


>gb|KYP65229.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 322

 Score =  126 bits (317), Expect(3) = 3e-36
 Identities = 65/114 (57%), Positives = 77/114 (67%)
 Frame = +3

Query: 2937 YIYNPNCDHWTVLVRLMKYLRSTMNYGILYSGFSLCIRVIGDDN*ISDSDEIKSTSGYIF 3116
            Y + PN DHW  L RLM+YLR TM+YGI YSGF   +    D N IS+SDE KSTSGY+F
Sbjct: 119  YTHCPNQDHWEALARLMRYLRGTMDYGIEYSGFPAVLEGYSDANWISNSDETKSTSGYVF 178

Query: 3117 TFGGGEIIWKSTKQTSIAKSTMEFVFVGLDSWS*TGNVAEWLRNFLA*CYVGFK 3278
            T GGG I W+S +Q+ IA+STME  FV L+    T   AEWLRNFLA   +G K
Sbjct: 179  TLGGGAIAWRSVRQSIIARSTMESEFVALEM---TSTEAEWLRNFLANIPLGMK 229



 Score = 56.2 bits (134), Expect(3) = 3e-36
 Identities = 29/57 (50%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
 Frame = +2

Query: 2756 VKKFGHFNVKPVSA-YDGNTQLKKNLGDHVAQFECAQIVGSMLHLMNIS*LDIVYFV 2923
            +KKF +++ K V+  YD N+ LK+N G+ +AQ + AQI+GS+LHLMN S  DI Y V
Sbjct: 57   LKKFDYYDCKSVTTPYDVNSPLKQNKGESLAQSQYAQIIGSLLHLMNFSRPDIAYAV 113



 Score = 21.2 bits (43), Expect(3) = 3e-36
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 3259 DVMLDSKPTPSVFMH 3303
            ++ L  KPTPSV +H
Sbjct: 223  NIPLGMKPTPSVSIH 237



 Score = 64.7 bits (156), Expect = 2e-07
 Identities = 33/69 (47%), Positives = 46/69 (66%)
 Frame = +1

Query: 2551 TCSHLVLKFI*YKTKELLASKFDVRDMGEASVILSVKIIRKDDIIMLS*ELYAEKLF*KF 2730
            TC  +V     +KTK  LAS FD++DMGEASVIL VK++RK D I+LS   Y E+   KF
Sbjct: 6    TCDEIV-----FKTKSFLASNFDMKDMGEASVILGVKVVRKGDSILLSQGHYVERFLKKF 60

Query: 2731 GHFNVKTAS 2757
             +++ K+ +
Sbjct: 61   DYYDCKSVT 69


>emb|CAN73119.1| hypothetical protein VITISV_020442 [Vitis vinifera]
          Length = 588

 Score =  118 bits (295), Expect(2) = 1e-34
 Identities = 58/104 (55%), Positives = 74/104 (71%)
 Frame = +3

Query: 2946 NPNCDHWTVLVRLMKYLRSTMNYGILYSGFSLCIRVIGDDN*ISDSDEIKSTSGYIFTFG 3125
            +PN DHWTV+ R++KYLR T+NYG+ +SGF   +    D N ISDSDE++STSGY+F  G
Sbjct: 388  SPNQDHWTVVRRVLKYLRGTINYGLCFSGFPSVLEGFSDANWISDSDEMESTSGYVFILG 447

Query: 3126 GGEIIWKSTKQTSIAKSTMEFVFVGLDSWS*TGNVAEWLRNFLA 3257
            G  + WKS KQT IA+STME  F+ L+  S   + AEWLRN LA
Sbjct: 448  GSLVSWKSAKQTYIARSTMEAEFIALEKIS---SEAEWLRNLLA 488



 Score = 59.7 bits (143), Expect(2) = 1e-34
 Identities = 30/56 (53%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
 Frame = +2

Query: 2759 KKFGHFNVKPVSA-YDGNTQLKKNLGDHVAQFECAQIVGSMLHLMNIS*LDIVYFV 2923
            KKF HF+ KP+S  YD N+QLKKN+    AQ E AQI+GS+++LMN +  DI Y +
Sbjct: 324  KKFEHFDCKPMSTPYDPNSQLKKNMEHSXAQIEYAQIIGSLMYLMNCTKPDIAYAI 379


>gb|AAP94586.1| putative retrotransposon RIRE1 poly protein [Zea mays]
          Length = 1309

 Score = 98.6 bits (244), Expect(3) = 1e-33
 Identities = 49/107 (45%), Positives = 66/107 (61%)
 Frame = +3

Query: 2937 YIYNPNCDHWTVLVRLMKYLRSTMNYGILYSGFSLCIRVIGDDN*ISDSDEIKSTSGYIF 3116
            Y  +P   HW  L R+++YL+  MN GI Y+GF   +    D N ISDSD++KSTSGY+F
Sbjct: 1116 YSASPGDRHWVALYRVLRYLKGAMNLGIKYTGFPSVLEGFSDANWISDSDQMKSTSGYVF 1175

Query: 3117 TFGGGEIIWKSTKQTSIAKSTMEFVFVGLDSWS*TGNVAEWLRNFLA 3257
            T  GG + W+S+KQ+   +ST E   V LDS       AEWLR+ L+
Sbjct: 1176 TLAGGAVSWRSSKQSVSTRSTKEAELVALDS---AALEAEWLRDLLS 1219



 Score = 53.5 bits (127), Expect(3) = 1e-33
 Identities = 25/54 (46%), Positives = 38/54 (70%)
 Frame = +1

Query: 2587 KTKELLASKFDVRDMGEASVILSVKIIRKDDIIMLS*ELYAEKLF*KFGHFNVK 2748
            +TK  L+  FD++D+GEA VIL++K+I+ +D I LS   Y EK+  +FGH + K
Sbjct: 1010 ETKLFLSKNFDMKDLGEADVILNIKLIKGEDGITLSQSHYVEKVMTRFGHMDCK 1063



 Score = 43.1 bits (100), Expect(3) = 1e-33
 Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
 Frame = +2

Query: 2762 KFGHFNVKPVSA-YDGNTQLKKNLGDHVAQFECAQIVGSMLHLMNIS*LDIVYFVC 2926
            +FGH + KPV+  YD +  L K  G+ V Q   +QI+GS+++L + +  DI Y VC
Sbjct: 1056 RFGHMDCKPVTTPYDPSYTLSKYEGEPVNQLLYSQIIGSLMYLSSATRPDISYAVC 1111


>emb|CAN76535.1| hypothetical protein VITISV_034845 [Vitis vinifera]
          Length = 558

 Score =  116 bits (290), Expect(2) = 1e-33
 Identities = 57/106 (53%), Positives = 72/106 (67%)
 Frame = +3

Query: 2937 YIYNPNCDHWTVLVRLMKYLRSTMNYGILYSGFSLCIRVIGDDN*ISDSDEIKSTSGYIF 3116
            Y  NPN DHWTV+ R++KYLR T++YG+ ++GF   +    D N ISDSDEIKS SGY+F
Sbjct: 411  YTQNPNQDHWTVVRRVLKYLRGTIDYGLCFNGFPSVLEGFSDANWISDSDEIKSISGYVF 470

Query: 3117 TFGGGEIIWKSTKQTSIAKSTMEFVFVGLDSWS*TGNVAEWLRNFL 3254
             F G  + WKSTKQT I +STME   + L++ S     AEWLRN L
Sbjct: 471  IFNGSAVSWKSTKQTCITRSTMEVELIALENVS---FEAEWLRNLL 513



 Score = 58.5 bits (140), Expect(2) = 1e-33
 Identities = 30/57 (52%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
 Frame = +2

Query: 2756 VKKFGHFNVKPVSA-YDGNTQLKKNLGDHVAQFECAQIVGSMLHLMNIS*LDIVYFV 2923
            ++KF HF+ KPVS  YD ++QLKKN    VAQ E A I+GS+++LMN +  DI+Y V
Sbjct: 349  LRKFEHFDCKPVSTLYDPSSQLKKNREHSVAQIEYAHIIGSLMYLMNCTRPDIIYVV 405


>gb|KYP59837.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 258

 Score =  119 bits (298), Expect(3) = 1e-32
 Identities = 63/114 (55%), Positives = 74/114 (64%)
 Frame = +3

Query: 2937 YIYNPNCDHWTVLVRLMKYLRSTMNYGILYSGFSLCIRVIGDDN*ISDSDEIKSTSGYIF 3116
            Y + PN DHW  L RLM+YLR TM+YGI YSGF   +    D N ISDSDE K TSGY+F
Sbjct: 55   YTHCPNQDHWEALARLMRYLRGTMDYGIEYSGFPAVLEGYSDANWISDSDETKYTSGYVF 114

Query: 3117 TFGGGEIIWKSTKQTSIAKSTMEFVFVGLDSWS*TGNVAEWLRNFLA*CYVGFK 3278
            T GGG I  +S +Q+ IA+STME  FV L+    T    EWLRNFLA   +G K
Sbjct: 115  TLGGGAIARRSVRQSIIARSTMESEFVALEM---TSTEVEWLRNFLANIPLGMK 165



 Score = 51.2 bits (121), Expect(3) = 1e-32
 Identities = 26/42 (61%), Positives = 31/42 (73%)
 Frame = +2

Query: 2798 YDGNTQLKKNLGDHVAQFECAQIVGSMLHLMNIS*LDIVYFV 2923
            YD N+QLK+N GD +AQ + AQI GS+LHLMN S  DI Y V
Sbjct: 8    YDVNSQLKQNKGDSLAQPQYAQITGSLLHLMNFSRPDIAYAV 49



 Score = 21.2 bits (43), Expect(3) = 1e-32
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 3259 DVMLDSKPTPSVFMH 3303
            ++ L  KPTPSV +H
Sbjct: 159  NIPLGMKPTPSVSIH 173


>emb|CAN72171.1| hypothetical protein VITISV_036207 [Vitis vinifera]
          Length = 1096

 Score =  107 bits (267), Expect(2) = 2e-31
 Identities = 52/99 (52%), Positives = 67/99 (67%)
 Frame = +3

Query: 2958 DHWTVLVRLMKYLRSTMNYGILYSGFSLCIRVIGDDN*ISDSDEIKSTSGYIFTFGGGEI 3137
            DHWTV+ R++KYLR T+NYG+ +SGF   +    D N I DSDE+KSTSGY+F  GG  +
Sbjct: 900  DHWTVVRRVLKYLRGTINYGLCFSGFPSVLEGFSDANWILDSDEMKSTSGYVFILGGSAV 959

Query: 3138 IWKSTKQTSIAKSTMEFVFVGLDSWS*TGNVAEWLRNFL 3254
             WKS KQT I +S ME  F+ L++ S   +  EWLRN L
Sbjct: 960  SWKSAKQTCITQSIMEAKFIALENAS---SEVEWLRNLL 995



 Score = 60.1 bits (144), Expect(2) = 2e-31
 Identities = 31/55 (56%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
 Frame = +2

Query: 2756 VKKFGHFNVKPVSA-YDGNTQLKKNLGDHVAQFECAQIVGSMLHLMNIS*LDIVY 2917
            ++KF HF+ KPVS  YD N+QLKKN    VAQ E AQI+GS+++LMN +  DI Y
Sbjct: 844  LRKFEHFDCKPVSTPYDPNSQLKKNREHSVAQIEYAQIIGSLMYLMNYTRPDIAY 898


>gb|KYP73716.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 304

 Score =  107 bits (267), Expect(2) = 5e-31
 Identities = 54/106 (50%), Positives = 71/106 (66%)
 Frame = +3

Query: 2937 YIYNPNCDHWTVLVRLMKYLRSTMNYGILYSGFSLCIRVIGDDN*ISDSDEIKSTSGYIF 3116
            Y +NP+  HW  L RL +YL+ T+NYGI Y+ + + I    D N ISDSDE KSTSGY+F
Sbjct: 126  YTHNPDHSHWLALERLFRYLKGTVNYGIHYACYPVVIEGFCDANWISDSDETKSTSGYVF 185

Query: 3117 TFGGGEIIWKSTKQTSIAKSTMEFVFVGLDSWS*TGNVAEWLRNFL 3254
            T  GG + WKS KQT I++STME   + LD+ S   + AE+L+N L
Sbjct: 186  TLAGGAVAWKSAKQTIISRSTMEAEIIALDTAS---SEAEFLKNLL 228



 Score = 58.5 bits (140), Expect(2) = 5e-31
 Identities = 29/57 (50%), Positives = 42/57 (73%), Gaps = 1/57 (1%)
 Frame = +2

Query: 2756 VKKFGHFNVKPVSA-YDGNTQLKKNLGDHVAQFECAQIVGSMLHLMNIS*LDIVYFV 2923
            +KKF +F+VKPVS  +D + +LKKN+G+ V+  + +QI+GS+LHL N S  DI Y V
Sbjct: 64   LKKFNYFDVKPVSTPFDPSIKLKKNIGESVSPLKYSQIIGSLLHLSNFSRPDIAYAV 120


>ref|XP_008363252.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103426950
            [Malus domestica]
          Length = 724

 Score =  112 bits (280), Expect(2) = 8e-31
 Identities = 56/106 (52%), Positives = 69/106 (65%)
 Frame = +3

Query: 2937 YIYNPNCDHWTVLVRLMKYLRSTMNYGILYSGFSLCIRVIGDDN*ISDSDEIKSTSGYIF 3116
            Y  NP  DHW  L+R+M+YL+ TMNYG+ Y+ +   +    D N ISDS + KSTSGY+F
Sbjct: 251  YTCNPGHDHWEALIRVMRYLKHTMNYGLHYTRYPPVLEGFTDANWISDSTDTKSTSGYVF 310

Query: 3117 TFGGGEIIWKSTKQTSIAKSTMEFVFVGLDSWS*TGNVAEWLRNFL 3254
            T GG  I WKS+ QT IA STME  F+ LD     G  AEWLR+FL
Sbjct: 311  TLGGAAISWKSSXQTCIAXSTMESEFIALDM---AGGEAEWLRDFL 353



 Score = 52.8 bits (125), Expect(2) = 8e-31
 Identities = 23/57 (40%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
 Frame = +2

Query: 2756 VKKFGHFNVKP-VSAYDGNTQLKKNLGDHVAQFECAQIVGSMLHLMNIS*LDIVYFV 2923
            ++K+GH   K  ++ +D N++LKKN GD ++Q E +Q++GS++++MN +  DI Y V
Sbjct: 189  LRKYGHLESKDAITPFDANSKLKKNKGDAISQREYSQVIGSLMYIMNCTRPDIAYSV 245


>emb|CAN68532.1| hypothetical protein VITISV_032270 [Vitis vinifera]
          Length = 572

 Score =  102 bits (255), Expect(2) = 6e-30
 Identities = 47/93 (50%), Positives = 63/93 (67%)
 Frame = +3

Query: 2937 YIYNPNCDHWTVLVRLMKYLRSTMNYGILYSGFSLCIRVIGDDN*ISDSDEIKSTSGYIF 3116
            Y  +PN DHWT++ R++KYLR T+NYG+ +SGF   +    D N IS+SDE+KSTSGY+F
Sbjct: 436  YTQSPNQDHWTIVRRILKYLRGTINYGLCFSGFPSVLEGYSDANWISNSDEMKSTSGYVF 495

Query: 3117 TFGGGEIIWKSTKQTSIAKSTMEFVFVGLDSWS 3215
              G   + WKS KQ  I +STME  F+ L+  S
Sbjct: 496  ILGESAVSWKSAKQICITRSTMEAEFIALEKAS 528



 Score = 59.3 bits (142), Expect(2) = 6e-30
 Identities = 31/56 (55%), Positives = 41/56 (73%), Gaps = 1/56 (1%)
 Frame = +2

Query: 2759 KKFGHFNVKPVSA-YDGNTQLKKNLGDHVAQFECAQIVGSMLHLMNIS*LDIVYFV 2923
            +KF HF+ KPVS  YD ++QLKK+    VAQ E AQI+GS+++LMN + LDI Y V
Sbjct: 375  RKFEHFDCKPVSTPYDPSSQLKKSREHSVAQIEYAQIIGSLMYLMNCTILDIAYAV 430


>emb|CAN72674.1| hypothetical protein VITISV_020404 [Vitis vinifera]
          Length = 366

 Score =  109 bits (273), Expect(2) = 6e-30
 Identities = 57/122 (46%), Positives = 76/122 (62%)
 Frame = +3

Query: 2937 YIYNPNCDHWTVLVRLMKYLRSTMNYGILYSGFSLCIRVIGDDN*ISDSDEIKSTSGYIF 3116
            Y  +PN DHWT++ R++KYLR T+NYG+ +SGF   +    D N IS+SDE+KST  Y+F
Sbjct: 247  YTQSPNQDHWTIVRRVLKYLRGTINYGLCFSGFPSVLEGFSDANWISNSDEMKSTKEYVF 306

Query: 3117 TFGGGEIIWKSTKQTSIAKSTMEFVFVGLDSWS*TGNVAEWLRNFLA*CYVGFKTNTFSV 3296
              GG  + WK  KQT I +STME  F+ L+  S   +  E LRN LA  +   +TN   V
Sbjct: 307  ILGGSAVSWKYAKQTCITRSTMEVDFITLEKPS---SELECLRNLLADIHFMDETNPICV 363

Query: 3297 YA 3302
            YA
Sbjct: 364  YA 365



 Score = 52.4 bits (124), Expect(2) = 6e-30
 Identities = 28/55 (50%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
 Frame = +2

Query: 2762 KFGHFNVKPVSA-YDGNTQLKKNLGDHVAQFECAQIVGSMLHLMNIS*LDIVYFV 2923
            K  HF+ KP+S  YD ++QLKKN    VAQ E AQI+G++++LMN +  DI Y V
Sbjct: 187  KCEHFDCKPMSTPYDPSSQLKKNREHSVAQIEYAQIIGNLMYLMNYTKPDIAYAV 241


>gb|KYP46750.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 219

 Score =  103 bits (258), Expect(2) = 1e-29
 Identities = 50/93 (53%), Positives = 62/93 (66%)
 Frame = +3

Query: 2937 YIYNPNCDHWTVLVRLMKYLRSTMNYGILYSGFSLCIRVIGDDN*ISDSDEIKSTSGYIF 3116
            Y +NP+  HW  L RL KYL+ T+NYGI Y+ + + I    D N ISDSDE KSTSGY+F
Sbjct: 61   YTHNPDHSHWLTLERLFKYLKGTINYGIHYACYPIVIEGFSDANWISDSDETKSTSGYVF 120

Query: 3117 TFGGGEIIWKSTKQTSIAKSTMEFVFVGLDSWS 3215
            T  GG I WK  KQT I++STME   + LD+ S
Sbjct: 121  TLAGGAITWKFAKQTIISRSTMEAKIIALDTAS 153



 Score = 57.0 bits (136), Expect(2) = 1e-29
 Identities = 29/54 (53%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
 Frame = +2

Query: 2765 FGHFNVKPVSA-YDGNTQLKKNLGDHVAQFECAQIVGSMLHLMNIS*LDIVYFV 2923
            F +F+VKPVS  +D N +LKKN+G+ V  F+ +QI+GS+LHL N S  DI Y V
Sbjct: 2    FNYFDVKPVSTLFDFNIKLKKNIGESVFPFKYSQIIGSLLHLSNYSRPDIAYVV 55


>ref|XP_008387315.1| PREDICTED: uncharacterized protein LOC103449768 [Malus domestica]
          Length = 2699

 Score =  108 bits (271), Expect(2) = 2e-29
 Identities = 52/106 (49%), Positives = 72/106 (67%)
 Frame = +3

Query: 2937 YIYNPNCDHWTVLVRLMKYLRSTMNYGILYSGFSLCIRVIGDDN*ISDSDEIKSTSGYIF 3116
            Y  NP  +HW  LV++++YL++T++YG+ Y+ +   +    D N ISD+ E KSTSGY+F
Sbjct: 2561 YTSNPAQEHWDALVQVLRYLKNTLDYGLHYTKYPPIVEGFSDANWISDTTESKSTSGYVF 2620

Query: 3117 TFGGGEIIWKSTKQTSIAKSTMEFVFVGLDSWS*TGNVAEWLRNFL 3254
            T GG  I WKS+KQ  IA+STMEF F+ LD     G  AEWL+NF+
Sbjct: 2621 TLGGAAISWKSSKQKCIARSTMEFEFITLDL---AGEEAEWLKNFV 2663



 Score = 51.6 bits (122), Expect(2) = 2e-29
 Identities = 22/57 (38%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
 Frame = +2

Query: 2756 VKKFGHFNVKPVS-AYDGNTQLKKNLGDHVAQFECAQIVGSMLHLMNIS*LDIVYFV 2923
            +++FG F+ KP + ++D   +L+KN GD ++Q E +Q++GS+++LMN +  D+ Y V
Sbjct: 2499 LRRFGQFDCKPAATSFDAGCKLEKNKGDAISQLEYSQVIGSLMYLMNSTRPDLAYAV 2555


>gb|AAK73108.1|AF391808_10 Fourf gag/pol protein [Zea mays] gi|168251067|gb|ACA21850.1| Fourf
            gag/pol protein [Zea mays]
          Length = 1279

 Score =  105 bits (263), Expect(3) = 5e-29
 Identities = 52/106 (49%), Positives = 68/106 (64%)
 Frame = +3

Query: 2937 YIYNPNCDHWTVLVRLMKYLRSTMNYGILYSGFSLCIRVIGDDN*ISDSDEIKSTSGYIF 3116
            ++  P  DHW  L R+++YL+ TM YGI Y+G    +    D N ISD+DE+ +TSGY+F
Sbjct: 1086 FVSKPGDDHWCALERVLRYLKGTMTYGIHYTGNPKVLEGYCDANWISDADELYATSGYVF 1145

Query: 3117 TFGGGEIIWKSTKQTSIAKSTMEFVFVGLDSWS*TGNVAEWLRNFL 3254
             FGGG + WKS KQT + KSTME     LD+    G  AEWLR+FL
Sbjct: 1146 LFGGGAVSWKSCKQTILTKSTMEAELAALDT---AGAEAEWLRDFL 1188



 Score = 44.3 bits (103), Expect(3) = 5e-29
 Identities = 22/50 (44%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
 Frame = +1

Query: 2587 KTKELLASKFDVRDMGEASVILSVKIIRK-DDIIMLS*ELYAEKLF*KFG 2733
            + K LL+S F+++D+GEA VIL++K++RK D  + L    Y EK+  +FG
Sbjct: 979  EVKNLLSSNFEMKDLGEADVILNIKLVRKADGGVTLLQSHYVEKVLSRFG 1028



 Score = 29.3 bits (64), Expect(3) = 5e-29
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +2

Query: 2756 VKKFGHFNVKPV-SAYDGNTQLKKNLGDHVAQFECAQIVGSMLHLMNIS*LDIVYFV 2923
            + +FG  +  P  + YD +  L+KN      Q   +QI+GS+++L + +  DI Y V
Sbjct: 1024 LSRFGFSDCDPAPTPYDPSVLLRKNRRIARDQLTYSQIIGSLMYLASATRPDISYAV 1080


>emb|CAN83343.1| hypothetical protein VITISV_042274 [Vitis vinifera]
          Length = 229

 Score =  100 bits (250), Expect(2) = 7e-29
 Identities = 47/93 (50%), Positives = 61/93 (65%)
 Frame = +3

Query: 2937 YIYNPNCDHWTVLVRLMKYLRSTMNYGILYSGFSLCIRVIGDDN*ISDSDEIKSTSGYIF 3116
            Y  + N DHWTV+ R++KYLR T+NYG+ YSGF   +    D N ISD DE+KSTSGY+F
Sbjct: 133  YTQSSNQDHWTVVRRVLKYLRDTINYGLYYSGFPSVLEGFSDANWISDLDEMKSTSGYVF 192

Query: 3117 TFGGGEIIWKSTKQTSIAKSTMEFVFVGLDSWS 3215
               G  + WKS KQT + +STM   F+ L+  S
Sbjct: 193  ILSGSVVSWKSAKQTCVTRSTMVTEFIALEKAS 225



 Score = 57.8 bits (138), Expect(2) = 7e-29
 Identities = 31/57 (54%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
 Frame = +2

Query: 2756 VKKFGHFNVKPVSA-YDGNTQLKKNLGDHVAQFECAQIVGSMLHLMNIS*LDIVYFV 2923
            ++KF HF+ KPVS  Y+ N+QLKKN    VAQ E AQI+GS+++LMN    DI Y V
Sbjct: 71   LRKFEHFDCKPVSTPYNPNSQLKKNREHSVAQIEYAQIIGSLMYLMNCIRPDIAYAV 127