BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia27_contig00024397
         (3714 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AKN59248.1| polyprotein [Lychnis mottle virus]                    1842   0.0  
ref|YP_227368.1| 109 kDa polyprotein [Strawberry latent ringspot...  1396   0.0  
gb|AKN59244.1| polyprotein [Cnidium vein yellowing virus 1]          1229   0.0  
gb|AKN59246.1| polyprotein [Cnidium vein yellowing virus 2]          1224   0.0  
emb|CAA54615.1| 98.8kD polyprotein [Strawberry latent ringspot v...  1086   0.0  
gb|ADN88403.1| polyprotein, partial [Strawberry latent ringspot ...   934   0.0  
gb|ADN88405.1| polyprotein, partial [Strawberry latent ringspot ...   933   0.0  
gb|ADN88406.1| polyprotein, partial [Strawberry latent ringspot ...   932   0.0  
gb|ADN88404.1| polyprotein, partial [Strawberry latent ringspot ...   929   0.0  
gb|ADN88402.1| polyprotein, partial [Strawberry latent ringspot ...   926   0.0  
ref|YP_227374.1| putative 40 kDa movement protein [Strawberry la...   610   0.0  
ref|YP_227375.1| large coat protein [Strawberry latent ringspot ...   521   e-171
ref|YP_227376.1| small coat protein [Strawberry latent ringspot ...   280   4e-83
gb|ABC58719.1| coat protein, partial [Strawberry latent ringspot...   264   2e-78
gb|ABC58721.2| coat protein, partial [Strawberry latent ringspot...   263   4e-78
gb|AAR99477.1| coat protein, partial [Strawberry latent ringspot...   261   3e-77
gb|AHB30925.1| coat protein, partial [Strawberry latent ringspot...   245   7e-72
gb|AHB30924.1| coat protein, partial [Strawberry latent ringspot...   243   3e-71
gb|AHB30923.1| coat protein, partial [Strawberry latent ringspot...   241   2e-70
gb|AEF97400.1| coat protein, partial [Strawberry latent ringspot...   231   5e-67

>gb|AKN59248.1| polyprotein [Lychnis mottle virus]
          Length = 994

 Score = 1842 bits (4772), Expect = 0.0
 Identities = 896/994 (90%), Positives = 933/994 (93%)
 Frame = +3

Query: 339  MTSFFRKRSTQEMPNVPSYSAKELEVLKAAITECGINYADVVRAAQTESGKMAILTAANT 518
            M+SFF +RSTQEMPNVPSYS KE+EVLKAAITECGINYADVVRAAQTESGKMAILTAANT
Sbjct: 1    MSSFFGRRSTQEMPNVPSYSPKEMEVLKAAITECGINYADVVRAAQTESGKMAILTAANT 60

Query: 519  SQLKSLIATTSTSNALARLKEKPKAVVHVSEGVGRQVLCDDKLTHQTTVVHTPEPLFXXX 698
            SQLKSL+ATT+TSN+L RL+EKPKA+VHVSEGVGRQVLCDDKLTHQTTVVHTPEPL+   
Sbjct: 61   SQLKSLVATTATSNSLMRLREKPKAIVHVSEGVGRQVLCDDKLTHQTTVVHTPEPLYKKM 120

Query: 699  XXXXXXXXXDTGEEEPKYRSADVCTIQLGVTSHLSGHSNQIAGVVLLDGNRSTQEQAVLG 878
                     DTG EEPKYRSADVCTIQLGVTSHLSGHSNQIAGVVLLDGNRSTQEQAVLG
Sbjct: 121  KEKKLKSGKDTGGEEPKYRSADVCTIQLGVTSHLSGHSNQIAGVVLLDGNRSTQEQAVLG 180

Query: 879  IGVLPLYEAHSHALFAPRLNIHYDDPNFVDRLQLLTTFSDDVLGGGSPAMSYSTISVVRH 1058
            IGVLPLYEAHSHALFAPRLNIHYDDPNFV+RLQLLTTFSDDVLGGGSPAMSYSTISVVRH
Sbjct: 181  IGVLPLYEAHSHALFAPRLNIHYDDPNFVNRLQLLTTFSDDVLGGGSPAMSYSTISVVRH 240

Query: 1059 NIVDAHYLPEPLPYSKLKEKYPCGVRGLSNFQAAEVAPLQPARLTRSASYVPIQRAGTKT 1238
            NI DAHYLPEPLPYSKLKEKYPCGVRGLSNFQAAE+APLQPARLTRSASY+PIQRAGTKT
Sbjct: 241  NIADAHYLPEPLPYSKLKEKYPCGVRGLSNFQAAEIAPLQPARLTRSASYMPIQRAGTKT 300

Query: 1239 VLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAALPSPPPQKCQFHNKVGCPCAQHT 1418
            VLTFEDN+AQ+KEQQPVQARA+FSF NISYGQQDRAALPSPPPQKCQFHNKVGCPCAQH 
Sbjct: 301  VLTFEDNVAQVKEQQPVQARAAFSFANISYGQQDRAALPSPPPQKCQFHNKVGCPCAQHA 360

Query: 1419 GSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHPFSFPVNSNVGTVVYTL 1598
            G+ EASGNHHEELVPAS+GGTEGQFFSPQPVVHPPDSKFVGSHPFSFP+NSNVGTVVYTL
Sbjct: 361  GNAEASGNHHEELVPASEGGTEGQFFSPQPVVHPPDSKFVGSHPFSFPINSNVGTVVYTL 420

Query: 1599 PIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLAKYPSRER 1778
            PI++ SL+DTEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETL+KYPSRER
Sbjct: 421  PIMRASLRDTEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLSKYPSRER 480

Query: 1779 ALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSTDVNGAFKVVIIKDLANFDVSDYGME 1958
            ALALQGTWFMPGRHDSTSLTVQELATPAGFCDM TDVNGAFKVVIIKDL NFDVSDYGME
Sbjct: 481  ALALQGTWFMPGRHDSTSLTVQELATPAGFCDMDTDVNGAFKVVIIKDLVNFDVSDYGME 540

Query: 1959 LSLYLEVEKIGLGDVIGGGELTTFYPLRQVVLDYELSTTTSKGKAXXXXXXXXXXAHDEA 2138
            LS+YLEVEK+GLGDV  GGELTTFYPLRQVVLDYELSTTTSKGKA          AHDEA
Sbjct: 541  LSMYLEVEKVGLGDVTVGGELTTFYPLRQVVLDYELSTTTSKGKALVLPLNPLLPAHDEA 600

Query: 2139 QFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAGGIAEFAFAYDTQDATEGDAYRRFGSS 2318
            QFYPSCSSSILENHRYWKG LSLEVVFNLPAMAGGIAE AFAYDT +  +GD YRRFGSS
Sbjct: 601  QFYPSCSSSILENHRYWKGVLSLEVVFNLPAMAGGIAELAFAYDTYNNADGDTYRRFGSS 660

Query: 2319 VVDLRAHRILRARVPXXXXXXXXXXXXXXXFEVKPQTSFGDVLKLVILFTAPLHISDTSR 2498
            VVDLRAHRILRARVP               FEVKPQT FGDVLKLVILFTAPLHISDTS+
Sbjct: 661  VVDLRAHRILRARVPLSGYGGYLAGGAGSLFEVKPQTGFGDVLKLVILFTAPLHISDTSK 720

Query: 2499 KGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVPNVVASGGPVIKVGTLEWEEPFISRVP 2678
            +G+VLVRYLGLEDLDYLEPATSIGRLNPKTTLVPNV ASGGPVIK+GT++WEEPFI+RVP
Sbjct: 721  RGAVLVRYLGLEDLDYLEPATSIGRLNPKTTLVPNVAASGGPVIKIGTVDWEEPFIARVP 780

Query: 2679 LGLRQKTFRLMTINKWSPSGFLYFPVTPSVHLPRTAGGFEASLEQQCPLMHRSQENCQWR 2858
            +GLRQKTFRLMTINKW+PSGFLYFPV+PSVHLPRTAGGFEASLEQQ PLMHRSQENCQWR
Sbjct: 781  MGLRQKTFRLMTINKWAPSGFLYFPVSPSVHLPRTAGGFEASLEQQRPLMHRSQENCQWR 840

Query: 2859 GTLRYHLTARLEGATEQFVLPHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDTF 3038
            GTLRYHLTARLEGATEQ VLPHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDTF
Sbjct: 841  GTLRYHLTARLEGATEQLVLPHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDTF 900

Query: 3039 SLGQDHPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVE 3218
            SLGQDHPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVE
Sbjct: 901  SLGQDHPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVE 960

Query: 3219 PDIEYRHPMGGFPLTIPDPSPAPKYYFENTFVVG 3320
            PDIEYRHPMGGFPLTIPDPSPAPKY+FENTF VG
Sbjct: 961  PDIEYRHPMGGFPLTIPDPSPAPKYFFENTFTVG 994


>ref|YP_227368.1| 109 kDa polyprotein [Strawberry latent ringspot virus]
            gi|58040999|gb|AAW63129.1| 109 kDa polyprotein
            [Strawberry latent ringspot virus]
          Length = 989

 Score = 1396 bits (3613), Expect = 0.0
 Identities = 683/994 (68%), Positives = 790/994 (79%)
 Frame = +3

Query: 339  MTSFFRKRSTQEMPNVPSYSAKELEVLKAAITECGINYADVVRAAQTESGKMAILTAANT 518
            M SFF +RST EMP+VPSYS +E+EVLK+AITECGINYADVVRAAQTESGK+AILTAANT
Sbjct: 1    MASFFSRRSTPEMPSVPSYSPREMEVLKSAITECGINYADVVRAAQTESGKLAILTAANT 60

Query: 519  SQLKSLIATTSTSNALARLKEKPKAVVHVSEGVGRQVLCDDKLTHQTTVVHTPEPLFXXX 698
            + LKSL+ATT+T +A  RL E PKA+VHV+EGVG+QVLCDDKLTHQTTVVHTP+ ++   
Sbjct: 61   NSLKSLVATTTTQSAFRRLSESPKAIVHVAEGVGKQVLCDDKLTHQTTVVHTPKKVYDHM 120

Query: 699  XXXXXXXXXDTGEEEPKYRSADVCTIQLGVTSHLSGHSNQIAGVVLLDGNRSTQEQAVLG 878
                     DT EEEPKYRSAD+CTIQLGVTSHLSGHSNQIAG+VLLDGNR+TQEQAVLG
Sbjct: 121  RSKRLKKTKDTDEEEPKYRSADICTIQLGVTSHLSGHSNQIAGIVLLDGNRATQEQAVLG 180

Query: 879  IGVLPLYEAHSHALFAPRLNIHYDDPNFVDRLQLLTTFSDDVLGGGSPAMSYSTISVVRH 1058
            IGVLPLYEAHSHALFAPRLNIHYDDPNFVDRLQLLTTFSDDVLGGGSPAMSYSTISVVRH
Sbjct: 181  IGVLPLYEAHSHALFAPRLNIHYDDPNFVDRLQLLTTFSDDVLGGGSPAMSYSTISVVRH 240

Query: 1059 NIVDAHYLPEPLPYSKLKEKYPCGVRGLSNFQAAEVAPLQPARLTRSASYVPIQRAGTKT 1238
            NI DAH+LPEPLPYSKLKEKYP G++GLSNFQAAE+APLQPARLTRSASY+PI+R+G KT
Sbjct: 241  NIADAHFLPEPLPYSKLKEKYPSGLKGLSNFQAAEIAPLQPARLTRSASYMPIRRSGAKT 300

Query: 1239 VLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAALPSPPPQKCQFHNKVGCPCAQHT 1418
            VLTFEDN A ++EQQP+QARASFSF+ ISYGQQDRAALP  P  KC FHN+VGCPC QHT
Sbjct: 301  VLTFEDNQASLREQQPLQARASFSFSGISYGQQDRAALPFAPSPKCSFHNRVGCPCKQHT 360

Query: 1419 GSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHPFSFPVNSNVGTVVYTL 1598
            G  EASG  HEELVPA+ GGTE  FFSP+ +  P  +KFVGSHPFSFP+NSNVGT VYTL
Sbjct: 361  GEAEASG-LHEELVPAASGGTEAIFFSPRSIPLPGSAKFVGSHPFSFPINSNVGTTVYTL 419

Query: 1599 PIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLAKYPSRER 1778
            P+I+TSLKDTEWGR+YK Y ++R KPTVRL+ S PIQAKGLLWLCYDP ETLAKYPSRER
Sbjct: 420  PLIRTSLKDTEWGRYYKSYTFMRFKPTVRLVSSAPIQAKGLLWLCYDPCETLAKYPSRER 479

Query: 1779 ALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSTDVNGAFKVVIIKDLANFDVSDYGME 1958
            AL LQGTWFMPGRHDS +LT+ ELATP+G+  M++D NGAFKVVIIKDL NF+V+D GME
Sbjct: 480  ALMLQGTWFMPGRHDSVTLTIDELATPSGYSIMTSDHNGAFKVVIIKDLENFEVADLGME 539

Query: 1959 LSLYLEVEKIGLGDVIGGGELTTFYPLRQVVLDYELSTTTSKGKAXXXXXXXXXXAHDEA 2138
            LSL+L+V+ IG+G         +F PLRQVV+D++LSTTT KGKA            D A
Sbjct: 540  LSLFLDVQDIGMGMGPEMPLTDSFLPLRQVVVDFDLSTTTPKGKALVVPLNPLLPGFDGA 599

Query: 2139 QFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAGGIAEFAFAYDTQDATEGDAYRRFGSS 2318
            Q+YPSCSSSILENHRYWKGTL LEV+FNLPAM GG  E  FA D+    E DAYR FGS+
Sbjct: 600  QWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGGGTVEMGFANDSCSGRESDAYRYFGST 659

Query: 2319 VVDLRAHRILRARVPXXXXXXXXXXXXXXXFEVKPQTSFGDVLKLVILFTAPLHISDTSR 2498
            VVDLRAHR+LRARVP               F V P T +G  L+ V+LFTAPLHISDT++
Sbjct: 660  VVDLRAHRLLRARVPLHGYGGYLMGGSGSLFAVPPLTDYGQSLRFVLLFTAPLHISDTTK 719

Query: 2499 KGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVPNVVASGGPVIKVGTLEWEEPFISRVP 2678
            KGSV+VRYLGLED +Y++P TS+GRLNP TTL    VASG PV++VGT +W EP + R+P
Sbjct: 720  KGSVMVRYLGLEDCEYIQPTTSLGRLNPATTL----VASGAPVVQVGTSDWVEPPLFRLP 775

Query: 2679 LGLRQKTFRLMTINKWSPSGFLYFPVTPSVHLPRTAGGFEASLEQQCPLMHRSQENCQWR 2858
            LGL Q+ FRL+TI+KW  SGFL+FP TPS H+P+  G FE  +EQ  PLMHRSQEN QW 
Sbjct: 776  LGLLQRRFRLLTISKWPKSGFLFFPTTPSSHIPKLVGTFEGEVEQHSPLMHRSQENAQWS 835

Query: 2859 GTLRYHLTARLEGATEQFVLPHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDTF 3038
            G+L Y+L+ R  GAT Q VLP R +   A +L  I+  PCF++  TF  ++P+   R+T 
Sbjct: 836  GSLTYYLSIRYSGATPQGVLPLRPVCLGATILDNIMGKPCFIEKDTFVQVMPMADPRETI 895

Query: 3039 SLGQDHPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVE 3218
             L        + TPP RW NTHFGATE Y  RTCP WVLLQFP +  + L VRD+SLWVE
Sbjct: 896  YLPTTDSVASYVTPPRRWVNTHFGATEMYGVRTCPAWVLLQFPNEEASHLGVRDISLWVE 955

Query: 3219 PDIEYRHPMGGFPLTIPDPSPAPKYYFENTFVVG 3320
            P + +RH +GGFP+  P P+PA  YY+ENTF VG
Sbjct: 956  PKVTFRHAVGGFPILKPTPAPAIDYYYENTFPVG 989


>gb|AKN59244.1| polyprotein [Cnidium vein yellowing virus 1]
          Length = 789

 Score = 1229 bits (3180), Expect = 0.0
 Identities = 593/694 (85%), Positives = 624/694 (89%)
 Frame = +3

Query: 1239 VLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAALPSPPPQKCQFHNKVGCPCAQHT 1418
            V  FE++ AQ  E     ARASFS  N SYGQQDR ALPS PPQ+CQFHNKVGC C QHT
Sbjct: 101  VPAFEEDQAQSGE-----ARASFSSANASYGQQDRVALPSLPPQECQFHNKVGCLCTQHT 155

Query: 1419 GSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHPFSFPVNSNVGTVVYTL 1598
              +EASG+HHEELVPAS+GGTEGQFFSPQP+ HP DS+FVGSHPFSFP+NSNVGTVVYTL
Sbjct: 156  SGSEASGHHHEELVPASEGGTEGQFFSPQPIAHPQDSRFVGSHPFSFPINSNVGTVVYTL 215

Query: 1599 PIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLAKYPSRER 1778
            PI++TSL+DTEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETL+KYPSRER
Sbjct: 216  PIMRTSLRDTEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLSKYPSRER 275

Query: 1779 ALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSTDVNGAFKVVIIKDLANFDVSDYGME 1958
            ALALQGTWFMPGRHDS SLTVQELATPAGFCDM TDVNGAFKVVIIKDLANFDVSDYGME
Sbjct: 276  ALALQGTWFMPGRHDSASLTVQELATPAGFCDMDTDVNGAFKVVIIKDLANFDVSDYGME 335

Query: 1959 LSLYLEVEKIGLGDVIGGGELTTFYPLRQVVLDYELSTTTSKGKAXXXXXXXXXXAHDEA 2138
            LSLYLEVEKIGLG V+    LTTFYPLRQVVLDYELSTTTSKGKA          AHDEA
Sbjct: 336  LSLYLEVEKIGLGSVVTNEALTTFYPLRQVVLDYELSTTTSKGKALVLPLNPLLPAHDEA 395

Query: 2139 QFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAGGIAEFAFAYDTQDATEGDAYRRFGSS 2318
            QFYPSCSSSILENHRYWKG LSLEVVFNLPAMAGGI E AFAY+T D  +GD YRRFGSS
Sbjct: 396  QFYPSCSSSILENHRYWKGVLSLEVVFNLPAMAGGIVELAFAYNTYDNVDGDIYRRFGSS 455

Query: 2319 VVDLRAHRILRARVPXXXXXXXXXXXXXXXFEVKPQTSFGDVLKLVILFTAPLHISDTSR 2498
            VVDLRAHRILRARVP               FEVKPQ   GD LKLV+LFTAPLHISDTS+
Sbjct: 456  VVDLRAHRILRARVPLSGYGGYLAGGSGSLFEVKPQVGSGDTLKLVVLFTAPLHISDTSK 515

Query: 2499 KGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVPNVVASGGPVIKVGTLEWEEPFISRVP 2678
            KGSVLVRYLGLEDLDYLEPATSIGRLNP+TTLVPNV ASGGP++KVGT+EWEEPFIS+VP
Sbjct: 516  KGSVLVRYLGLEDLDYLEPATSIGRLNPETTLVPNVAASGGPIVKVGTVEWEEPFISKVP 575

Query: 2679 LGLRQKTFRLMTINKWSPSGFLYFPVTPSVHLPRTAGGFEASLEQQCPLMHRSQENCQWR 2858
            LGLRQKTFRLMTINKW+PSGFLYFPVTPSVHLPRTAG F A LEQQCPLMHRSQENCQWR
Sbjct: 576  LGLRQKTFRLMTINKWAPSGFLYFPVTPSVHLPRTAGNFVADLEQQCPLMHRSQENCQWR 635

Query: 2859 GTLRYHLTARLEGATEQFVLPHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDTF 3038
            GTL+YHLTARLEGAT+Q +LPHRSLTFSAVLLSKILPAPCF+DNSTFKPLLPLLSV+DTF
Sbjct: 636  GTLKYHLTARLEGATDQLILPHRSLTFSAVLLSKILPAPCFIDNSTFKPLLPLLSVKDTF 695

Query: 3039 SLGQDHPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVE 3218
            SL QDHPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVE
Sbjct: 696  SLEQDHPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVE 755

Query: 3219 PDIEYRHPMGGFPLTIPDPSPAPKYYFENTFVVG 3320
            PDIEYRHPMGGFPLTIPDPSPAP+Y+FENTFVVG
Sbjct: 756  PDIEYRHPMGGFPLTIPDPSPAPRYFFENTFVVG 789



 Score =  150 bits (378), Expect = 2e-33
 Identities = 76/99 (76%), Positives = 89/99 (89%)
 Frame = +3

Query: 345 SFFRKRSTQEMPNVPSYSAKELEVLKAAITECGINYADVVRAAQTESGKMAILTAANTSQ 524
           S F +RSTQEMPNVPSYS +E+EVLKAAITE GI+Y DVVRAAQTESGKMAILTA +T+Q
Sbjct: 2   SSFGRRSTQEMPNVPSYSPEEMEVLKAAITEYGISYVDVVRAAQTESGKMAILTAVSTNQ 61

Query: 525 LKSLIATTSTSNALARLKEKPKAVVHVSEGVGRQVLCDD 641
           L+SL+ATT+TSN+L  L++KP+A VHVSEGV RQVLCDD
Sbjct: 62  LESLVATTATSNSLVCLRKKPEATVHVSEGVRRQVLCDD 100


>gb|AKN59246.1| polyprotein [Cnidium vein yellowing virus 2]
          Length = 789

 Score = 1224 bits (3167), Expect = 0.0
 Identities = 592/693 (85%), Positives = 627/693 (90%), Gaps = 2/693 (0%)
 Frame = +3

Query: 1248 FEDNIAQIKEQQPV--QARASFSFTNISYGQQDRAALPSPPPQKCQFHNKVGCPCAQHTG 1421
            F D++   +E Q    +ARASFSF N  YGQQDR ALPS PPQ+CQFHNKV C CAQHT 
Sbjct: 97   FCDDVPAFEEDQAQSGEARASFSFANAFYGQQDRVALPSLPPQECQFHNKVDCLCAQHTS 156

Query: 1422 STEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHPFSFPVNSNVGTVVYTLP 1601
             +EASG+HHEELVPASDGGTEGQFFSPQPVVHPPDS+FVGSHPFSFPVNSNVGTVVYTLP
Sbjct: 157  GSEASGHHHEELVPASDGGTEGQFFSPQPVVHPPDSRFVGSHPFSFPVNSNVGTVVYTLP 216

Query: 1602 IIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLAKYPSRERA 1781
            I+++SLKDTE+GRFY+GYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETL+KYPSRERA
Sbjct: 217  IMRSSLKDTEYGRFYRGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLSKYPSRERA 276

Query: 1782 LALQGTWFMPGRHDSTSLTVQELATPAGFCDMSTDVNGAFKVVIIKDLANFDVSDYGMEL 1961
            LALQGTWFMPGRHDSTSLTVQELATPAGFCDM  DVNGAFKVV+IKDLANFDVSDYGMEL
Sbjct: 277  LALQGTWFMPGRHDSTSLTVQELATPAGFCDMDMDVNGAFKVVVIKDLANFDVSDYGMEL 336

Query: 1962 SLYLEVEKIGLGDVIGGGELTTFYPLRQVVLDYELSTTTSKGKAXXXXXXXXXXAHDEAQ 2141
            S+YLEVEKIGLGD+     LTTFYPLRQVVLDYEL+TTT+KGKA          AHD AQ
Sbjct: 337  SMYLEVEKIGLGDITVDERLTTFYPLRQVVLDYELTTTTAKGKALVLPLNPLLPAHDGAQ 396

Query: 2142 FYPSCSSSILENHRYWKGTLSLEVVFNLPAMAGGIAEFAFAYDTQDATEGDAYRRFGSSV 2321
            FYPSCSSSILENHRYWKGTLSLEVVFNLPAMAGGIAE AFAYDT D  +GD YRRFGSSV
Sbjct: 397  FYPSCSSSILENHRYWKGTLSLEVVFNLPAMAGGIAELAFAYDTYDNADGDTYRRFGSSV 456

Query: 2322 VDLRAHRILRARVPXXXXXXXXXXXXXXXFEVKPQTSFGDVLKLVILFTAPLHISDTSRK 2501
            VDLRAHRILRARVP               FEVK QT FGDVLKLVILFTAPLHISDTS++
Sbjct: 457  VDLRAHRILRARVPLSGYGGYLAGGSGSLFEVKSQTGFGDVLKLVILFTAPLHISDTSKR 516

Query: 2502 GSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVPNVVASGGPVIKVGTLEWEEPFISRVPL 2681
            GSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVP+V ASGGPVIKVGT EWEEPFI++VP+
Sbjct: 517  GSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVPSVAASGGPVIKVGTAEWEEPFIAKVPM 576

Query: 2682 GLRQKTFRLMTINKWSPSGFLYFPVTPSVHLPRTAGGFEASLEQQCPLMHRSQENCQWRG 2861
            GLRQKTFRLMTI+KWSPSGFLYFPV+PSVHLPRTAGGF+ASLEQQCPLMHRSQENCQWRG
Sbjct: 577  GLRQKTFRLMTISKWSPSGFLYFPVSPSVHLPRTAGGFKASLEQQCPLMHRSQENCQWRG 636

Query: 2862 TLRYHLTARLEGATEQFVLPHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDTFS 3041
            TL+YHLTARLEGATEQ VLPHRSLTFSAVLLS+ILPAPCFVD STF+PLLPLLSV+DTFS
Sbjct: 637  TLKYHLTARLEGATEQLVLPHRSLTFSAVLLSRILPAPCFVDKSTFQPLLPLLSVKDTFS 696

Query: 3042 LGQDHPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVEP 3221
            L QDHPFVEFTTPPGRW NTHFGATEQYTWRTCPVWVLLQFPPKTM QLHVRDVSLWVEP
Sbjct: 697  LSQDHPFVEFTTPPGRWINTHFGATEQYTWRTCPVWVLLQFPPKTMTQLHVRDVSLWVEP 756

Query: 3222 DIEYRHPMGGFPLTIPDPSPAPKYYFENTFVVG 3320
            +IEYRHPMGGFPL IPDPSPAPKY+FENTFVVG
Sbjct: 757  NIEYRHPMGGFPLIIPDPSPAPKYFFENTFVVG 789



 Score =  155 bits (391), Expect = 5e-35
 Identities = 77/99 (77%), Positives = 90/99 (90%)
 Frame = +3

Query: 345 SFFRKRSTQEMPNVPSYSAKELEVLKAAITECGINYADVVRAAQTESGKMAILTAANTSQ 524
           SFF +RSTQEMPNVPSYS +E+EVLKAAITE GI+Y DVVRAAQTESGKMAILTA NT+Q
Sbjct: 2   SFFGRRSTQEMPNVPSYSPEEMEVLKAAITEYGISYVDVVRAAQTESGKMAILTAVNTNQ 61

Query: 525 LKSLIATTSTSNALARLKEKPKAVVHVSEGVGRQVLCDD 641
           L+SL+ATT+TSN+L  L++KP+A VHVSEGVG+QV CDD
Sbjct: 62  LESLVATTATSNSLVCLRKKPEATVHVSEGVGQQVFCDD 100


>emb|CAA54615.1| 98.8kD polyprotein [Strawberry latent ringspot virus]
          Length = 890

 Score = 1086 bits (2809), Expect = 0.0
 Identities = 549/832 (65%), Positives = 633/832 (76%)
 Frame = +3

Query: 726  DTGEEEPKYRSADVCTIQLGVTSHLSGHSNQIAGVVLLDGNRSTQEQAVLGIGVLPLYEA 905
            DT EEEPKY    V +    V S  S  SNQIAGVVLLDGNR+TQE AVLGIGVLPLYEA
Sbjct: 11   DTDEEEPKYALMFVLSTWSHVPSFWS--SNQIAGVVLLDGNRATQETAVLGIGVLPLYEA 68

Query: 906  HSHALFAPRLNIHYDDPNFVDRLQLLTTFSDDVLGGGSPAMSYSTISVVRHNIVDAHYLP 1085
            HSHALFAPRL I      F DRLQLLTTFSD VLGGGSPAMSYSTISVVRHN+ DAH+LP
Sbjct: 69   HSHALFAPRL-ISTMMIEFCDRLQLLTTFSDVVLGGGSPAMSYSTISVVRHNVRDAHFLP 127

Query: 1086 EPLPYSKLKEKYPCGVRGLSNFQAAEVAPLQPARLTRSASYVPIQRAGTKTVLTFEDNIA 1265
            EPLPYSK KEK   GV+GLSNFQAAE+APLQPARLTRSASY+PIQR+G KTVLTFEDN A
Sbjct: 128  EPLPYSKSKEK-TSGVKGLSNFQAAEIAPLQPARLTRSASYMPIQRSGEKTVLTFEDNQA 186

Query: 1266 QIKEQQPVQARASFSFTNISYGQQDRAALPSPPPQKCQFHNKVGCPCAQHTGSTEASGNH 1445
             ++EQQP +ARASFSF+ +SYGQQDRAALPS P  KC FHN+VGCPC QHTG  EASG H
Sbjct: 187  SLREQQPFEARASFSFSGVSYGQQDRAALPSAPSPKCAFHNRVGCPCKQHTGEAEASGLH 246

Query: 1446 HEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHPFSFPVNSNVGTVVYTLPIIKTSLKD 1625
             EELVPAS GGTE  FFSP+ +  P  +KFVGSHPFSFP+NSNVGT VYTLP+I+TSLKD
Sbjct: 247  -EELVPASSGGTEAIFFSPKSIPLPGSAKFVGSHPFSFPINSNVGTTVYTLPLIRTSLKD 305

Query: 1626 TEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLAKYPSRERALALQGTWF 1805
            TEWGR+Y+ Y ++R KPTVRL+ S PIQAKGLLWLCYDP ETLAKYPSRERAL LQGTWF
Sbjct: 306  TEWGRYYRSYTFMRFKPTVRLVSSAPIQAKGLLWLCYDPCETLAKYPSRERALMLQGTWF 365

Query: 1806 MPGRHDSTSLTVQELATPAGFCDMSTDVNGAFKVVIIKDLANFDVSDYGMELSLYLEVEK 1985
            MPGRHDS +LT+ ELATP+G+  M++D NGAFKVVIIKDL NF+V+D GMELSL+L+V+ 
Sbjct: 366  MPGRHDSVTLTIDELATPSGYSIMTSDHNGAFKVVIIKDLENFEVADLGMELSLFLDVQD 425

Query: 1986 IGLGDVIGGGELTTFYPLRQVVLDYELSTTTSKGKAXXXXXXXXXXAHDEAQFYPSCSSS 2165
            IG+G         +F PLRQVV+D++LSTTT KGKA            D AQ+YPSCSSS
Sbjct: 426  IGMGMGPEMPLTDSFLPLRQVVVDFDLSTTTPKGKALVVPLNPLLPGFDGAQWYPSCSSS 485

Query: 2166 ILENHRYWKGTLSLEVVFNLPAMAGGIAEFAFAYDTQDATEGDAYRRFGSSVVDLRAHRI 2345
            ILENHRYWKGTL LEV+FNLPAM GG  E  FA D+    E DAYR FGS+VVDLRAHR+
Sbjct: 486  ILENHRYWKGTLVLEVIFNLPAMGGGTVEMGFANDSYSGWESDAYRYFGSTVVDLRAHRL 545

Query: 2346 LRARVPXXXXXXXXXXXXXXXFEVKPQTSFGDVLKLVILFTAPLHISDTSRKGSVLVRYL 2525
            LRA+VP               F V P T +G  L+ V+LFTAPLHISDT++ GSV+VRYL
Sbjct: 546  LRAKVPLHGYGGYLMGGSGSLFAVPPLTDYGQSLRFVLLFTAPLHISDTTKTGSVMVRYL 605

Query: 2526 GLEDLDYLEPATSIGRLNPKTTLVPNVVASGGPVIKVGTLEWEEPFISRVPLGLRQKTFR 2705
            GLED +Y++P TS+GRLNP TTL    VASG PV++VGT +W EP + R+PLGL QK FR
Sbjct: 606  GLEDCEYIQPTTSLGRLNPATTL----VASGAPVVQVGTSDWVEPLLFRLPLGLLQKRFR 661

Query: 2706 LMTINKWSPSGFLYFPVTPSVHLPRTAGGFEASLEQQCPLMHRSQENCQWRGTLRYHLTA 2885
            L+TI+KW  SGFL+FP TPS H+P+ AG FE  +EQ  PLMHRSQEN QW G+L Y+L+ 
Sbjct: 662  LLTISKWPKSGFLFFPTTPSSHIPKLAGTFEGEVEQHSPLMHRSQENAQWSGSLTYYLSI 721

Query: 2886 RLEGATEQFVLPHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDHPFV 3065
            R  GAT Q VLP R +   A +L  I+  PCF++  TF  ++P+   R+T  L       
Sbjct: 722  RYSGATPQGVLPLRPVCLGATILDNIMGKPCFIEKDTFVQVMPMADPRETIYLPTTDSIA 781

Query: 3066 EFTTPPGRWTNTHFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVEP 3221
             + TPP RW NTHFGATE Y  RTCP WVLLQFP +  + L VRD+SLWVEP
Sbjct: 782  SYETPPRRWVNTHFGATETYGVRTCPAWVLLQFPNEEASHLGVRDISLWVEP 833


>gb|ADN88403.1| polyprotein, partial [Strawberry latent ringspot virus]
          Length = 712

 Score =  934 bits (2413), Expect = 0.0
 Identities = 460/720 (63%), Positives = 541/720 (75%), Gaps = 3/720 (0%)
 Frame = +3

Query: 1170 PLQPARLTRSASYVPIQRAGTKTVLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAA 1349
            PLQPARLTRSASY+PIQR+G KTVLTFEDN A +KEQQP+QARASFSF+ +SYGQ DRAA
Sbjct: 1    PLQPARLTRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQHDRAA 60

Query: 1350 LPSPPPQKCQFHNKVGCPCAQHTGSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDS 1529
            LPS PPQKC FHN+VGCPC QHTG  E SG H EELVPAS GGTE  FFSP+ +  P  +
Sbjct: 61   LPSAPPQKCSFHNRVGCPCTQHTGEAEPSGLH-EELVPASSGGTEAIFFSPKSIPVPGSA 119

Query: 1530 KFVGSHPFSFPVNSNVGTVVYTLPIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQ 1709
            KFVGSHPFSFP+NSNVGT VY+LP+I TSLKDTEWGR+Y+ Y ++R KPTVRL+ S PIQ
Sbjct: 120  KFVGSHPFSFPINSNVGTTVYSLPLISTSLKDTEWGRYYRSYTFMRFKPTVRLVSSAPIQ 179

Query: 1710 AKGLLWLCYDPSETLAKYPSRERALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSTDV 1889
            AKGLLWLCYDP ETLAKYPSRERAL LQG WFMPGRHDS +LT+ ELATP+G+  M++D 
Sbjct: 180  AKGLLWLCYDPCETLAKYPSRERALMLQGVWFMPGRHDSVTLTIDELATPSGYSIMNSDH 239

Query: 1890 NGAFKVVIIKDLANFDVSDYGMELSLYLEVEKIGLGDVIGGGEL---TTFYPLRQVVLDY 2060
            NGAFKVVIIKDL NF+V+D GMELSL+L+V+ IG+G    G EL    +F PLRQVV+D+
Sbjct: 240  NGAFKVVIIKDLENFEVADLGMELSLFLDVQDIGMGI---GPELPLTDSFLPLRQVVVDF 296

Query: 2061 ELSTTTSKGKAXXXXXXXXXXAHDEAQFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAG 2240
            +LSTTT KGKA            D AQ+YPSCSSSILENHRYWKGTL LEV+FNLPAM G
Sbjct: 297  DLSTTTPKGKALVVPLNPLLPGFDGAQWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGG 356

Query: 2241 GIAEFAFAYDTQDATEGDAYRRFGSSVVDLRAHRILRARVPXXXXXXXXXXXXXXXFEVK 2420
            G  E  FA ++    E DAYR FGS+VVDLRAHR+LRA+VP               F V 
Sbjct: 357  GTVEMGFANNSYSGWESDAYRYFGSTVVDLRAHRLLRAKVPLYGYGGYLMGGSGSLFAVP 416

Query: 2421 PQTSFGDVLKLVILFTAPLHISDTSRKGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVP 2600
            P T +G  L+ V+LFTAPLHISD ++KGSV++RYLGLED +Y++P TS+GRLNP TTL  
Sbjct: 417  PLTDYGQSLRFVLLFTAPLHISDATKKGSVMIRYLGLEDCEYIQPTTSLGRLNPATTL-- 474

Query: 2601 NVVASGGPVIKVGTLEWEEPFISRVPLGLRQKTFRLMTINKWSPSGFLYFPVTPSVHLPR 2780
              VASG PV++VGT +W EP + R+PLGL QK FRL+TI+KW  SGFL+ P+TPS H+P+
Sbjct: 475  --VASGAPVVQVGTSDWVEPPLLRLPLGLLQKKFRLLTISKWPKSGFLFLPMTPSSHIPK 532

Query: 2781 TAGGFEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATEQFVLPHRSLTFSAVLLSK 2960
             AG FE  +EQ  PLMHRSQEN QW G+L Y+L+ R  GAT Q VLP R + F A +L  
Sbjct: 533  LAGTFEGEVEQHSPLMHRSQENAQWCGSLTYYLSIRYSGATPQGVLPLRPVCFGATVLDN 592

Query: 2961 ILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDHPFVEFTTPPGRWTNTHFGATEQYTWRTC 3140
            IL  PCFV+  TF  ++P+    +T  L        + TPP RW NTHFGATE Y  RTC
Sbjct: 593  ILGKPCFVEKDTFIQVMPMADPGETVYLPTTESIAFYETPPRRWVNTHFGATESYGVRTC 652

Query: 3141 PVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFVVG 3320
            P WVLLQFP +  + L VRDVSLWVEP+I YRH +GGFP+  P P PA  YY+ENTF VG
Sbjct: 653  PAWVLLQFPNEEASHLGVRDVSLWVEPNISYRHAVGGFPILKPTPPPAIDYYYENTFPVG 712


>gb|ADN88405.1| polyprotein, partial [Strawberry latent ringspot virus]
          Length = 712

 Score =  933 bits (2411), Expect = 0.0
 Identities = 460/720 (63%), Positives = 540/720 (75%), Gaps = 3/720 (0%)
 Frame = +3

Query: 1170 PLQPARLTRSASYVPIQRAGTKTVLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAA 1349
            PLQPARLTRSASY+PIQR+G KTVLTFEDN A +KEQQP+QARASFSF+ +SYGQ DRAA
Sbjct: 1    PLQPARLTRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQHDRAA 60

Query: 1350 LPSPPPQKCQFHNKVGCPCAQHTGSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDS 1529
            LPS PPQKC FHN+VGCPC QHTG  E SG H EELVPAS GGTE  FFSP+ +  P  +
Sbjct: 61   LPSAPPQKCSFHNRVGCPCTQHTGEAEPSGLH-EELVPASSGGTEAIFFSPKSIPVPGSA 119

Query: 1530 KFVGSHPFSFPVNSNVGTVVYTLPIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQ 1709
            KFVGSHPFSFP+NSNVGT VY+LP+I TSLKDTEWGR+Y+ Y ++R KPTVRL+ S PIQ
Sbjct: 120  KFVGSHPFSFPINSNVGTTVYSLPLISTSLKDTEWGRYYRSYTFMRFKPTVRLVSSAPIQ 179

Query: 1710 AKGLLWLCYDPSETLAKYPSRERALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSTDV 1889
            AKGLLWLCYDP ETLAKYPSRERAL LQG WFMPGRHDS +LT+ ELATP+G+  M++D 
Sbjct: 180  AKGLLWLCYDPCETLAKYPSRERALMLQGVWFMPGRHDSVTLTIDELATPSGYSIMNSDH 239

Query: 1890 NGAFKVVIIKDLANFDVSDYGMELSLYLEVEKIGLGDVIGGGEL---TTFYPLRQVVLDY 2060
            NGAFKVVIIKDL NF+V+D GMELSL+L+V+ IG+G    G EL    +F PLRQVV+D+
Sbjct: 240  NGAFKVVIIKDLENFEVADLGMELSLFLDVQDIGMGI---GPELPLTDSFLPLRQVVVDF 296

Query: 2061 ELSTTTSKGKAXXXXXXXXXXAHDEAQFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAG 2240
            +LSTTT KGKA            D AQ+YPSCSSSILENHRYWKGTL LEV+FNLPAM G
Sbjct: 297  DLSTTTPKGKALVVPLNPLLPGFDGAQWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGG 356

Query: 2241 GIAEFAFAYDTQDATEGDAYRRFGSSVVDLRAHRILRARVPXXXXXXXXXXXXXXXFEVK 2420
            G  E  FA ++    E DAYR FGS+VVDLRAHR+LRA+VP               F V 
Sbjct: 357  GTVEMGFANNSYSGWESDAYRYFGSTVVDLRAHRLLRAKVPLYGYGGYLMGGSGSLFAVP 416

Query: 2421 PQTSFGDVLKLVILFTAPLHISDTSRKGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVP 2600
            P T +G  L+ V+LFTAPLHISD ++KGSV++RYLGLED +Y++P TS+GRLNP TTL  
Sbjct: 417  PLTDYGQSLRFVLLFTAPLHISDATKKGSVMIRYLGLEDCEYIQPTTSLGRLNPATTL-- 474

Query: 2601 NVVASGGPVIKVGTLEWEEPFISRVPLGLRQKTFRLMTINKWSPSGFLYFPVTPSVHLPR 2780
              VASG PV++VGT +W EP   R+PLGL QK FRL+TI+KW  SGFL+ P+TPS H+P+
Sbjct: 475  --VASGAPVVQVGTFDWVEPPSLRLPLGLLQKKFRLLTISKWPKSGFLFLPMTPSSHIPK 532

Query: 2781 TAGGFEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATEQFVLPHRSLTFSAVLLSK 2960
             AG FE  +EQ  PLMHRSQEN QW G+L Y+L+ R  GAT Q VLP R + F A +L  
Sbjct: 533  LAGTFEGEVEQHSPLMHRSQENAQWCGSLTYYLSIRYSGATPQGVLPLRPVCFGATVLDN 592

Query: 2961 ILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDHPFVEFTTPPGRWTNTHFGATEQYTWRTC 3140
            IL  PCFV+  TF  ++P+    +T  L        + TPP RW NTHFGATE Y  RTC
Sbjct: 593  ILGKPCFVEKDTFIQVMPMADPGETVYLPTTESIAFYETPPRRWVNTHFGATESYGVRTC 652

Query: 3141 PVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFVVG 3320
            P WVLLQFP +  + L VRDVSLWVEP+I YRH +GGFP+  P P PA  YY+ENTF VG
Sbjct: 653  PAWVLLQFPNEEASHLGVRDVSLWVEPNISYRHAVGGFPILKPTPPPAIDYYYENTFPVG 712


>gb|ADN88406.1| polyprotein, partial [Strawberry latent ringspot virus]
          Length = 712

 Score =  932 bits (2410), Expect = 0.0
 Identities = 458/720 (63%), Positives = 543/720 (75%), Gaps = 3/720 (0%)
 Frame = +3

Query: 1170 PLQPARLTRSASYVPIQRAGTKTVLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAA 1349
            PLQPARLTRSASY+PIQR+G KTVLTFEDN A +KEQQP+QARASFSF+ +SYGQQDRAA
Sbjct: 1    PLQPARLTRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQQDRAA 60

Query: 1350 LPSPPPQKCQFHNKVGCPCAQHTGSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDS 1529
            LPS P  KC FHN+VGCPC QHTG  E SG H E+LVPA+ GGTE  FFSP+ V  P  +
Sbjct: 61   LPSAPSPKCSFHNRVGCPCKQHTGEAEPSGLH-EDLVPAASGGTEAIFFSPKSVPVPGSA 119

Query: 1530 KFVGSHPFSFPVNSNVGTVVYTLPIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQ 1709
            KFVGSHPFSFP+NSNVGT VY+LP+I TSLKDTEWGR+Y+ Y ++R KPTVRLI S PIQ
Sbjct: 120  KFVGSHPFSFPINSNVGTTVYSLPLISTSLKDTEWGRYYRSYTFMRFKPTVRLISSAPIQ 179

Query: 1710 AKGLLWLCYDPSETLAKYPSRERALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSTDV 1889
            AKGLLWLCYDP ETLAKYPSRERAL LQG WFMPGRHDS +LT+ ELATP+G+  M++D 
Sbjct: 180  AKGLLWLCYDPCETLAKYPSRERALMLQGVWFMPGRHDSVTLTIDELATPSGYSIMNSDH 239

Query: 1890 NGAFKVVIIKDLANFDVSDYGMELSLYLEVEKIGLGDVIGGGEL---TTFYPLRQVVLDY 2060
            NGAFKVVIIKDL NF+V+D GMELSL+L+V+ IG+G    G EL    +F PLRQVV+D+
Sbjct: 240  NGAFKVVIIKDLENFEVADLGMELSLFLDVQDIGMGI---GPELPLTDSFLPLRQVVVDF 296

Query: 2061 ELSTTTSKGKAXXXXXXXXXXAHDEAQFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAG 2240
            +LSTTT KGKA            D AQ+YPSCSSSILENHRYWKGTL LEV+FNLPAM G
Sbjct: 297  DLSTTTPKGKALVVPLNPLLPGFDGAQWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGG 356

Query: 2241 GIAEFAFAYDTQDATEGDAYRRFGSSVVDLRAHRILRARVPXXXXXXXXXXXXXXXFEVK 2420
            G  E  FA ++    E DAYR FGS+VVDLRAHR+LRA+VP               F V 
Sbjct: 357  GTVEMGFANNSYSGWESDAYRHFGSTVVDLRAHRLLRAKVPLYGYGGYLMGGSGSLFAVP 416

Query: 2421 PQTSFGDVLKLVILFTAPLHISDTSRKGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVP 2600
            P T +G  L+ V+LFTAPLHISDT++KGSV++RYLGLED +Y++P TS+GRLNP TTL  
Sbjct: 417  PLTDYGQSLRFVLLFTAPLHISDTTKKGSVMIRYLGLEDCEYIQPTTSLGRLNPATTL-- 474

Query: 2601 NVVASGGPVIKVGTLEWEEPFISRVPLGLRQKTFRLMTINKWSPSGFLYFPVTPSVHLPR 2780
              VASG PV++VGT +W EP + R+PLGL QK FRL+TI+KW  SGFL+FP+TPS H+P+
Sbjct: 475  --VASGAPVVQVGTSDWMEPPLLRLPLGLLQKKFRLLTISKWPKSGFLFFPMTPSSHMPK 532

Query: 2781 TAGGFEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATEQFVLPHRSLTFSAVLLSK 2960
              G FE  +EQ  PLMHRSQEN QW G+L Y+L+ R  GAT Q VLP R + F A +L  
Sbjct: 533  LVGTFEGEVEQHSPLMHRSQENAQWCGSLTYYLSIRYSGATPQGVLPMRPVCFGATVLDN 592

Query: 2961 ILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDHPFVEFTTPPGRWTNTHFGATEQYTWRTC 3140
            IL  PCFV+  TF  ++P+   R+T  L        + TPP RW NTHFGATE Y  RTC
Sbjct: 593  ILGKPCFVEKDTFIQVMPMADPRETIYLPTTESVAFYETPPRRWVNTHFGATESYGVRTC 652

Query: 3141 PVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFVVG 3320
            P WVLLQFP +  + L VRD+SLWVEP+I +RH +GGFP+  P P+P+  YY+ENTF VG
Sbjct: 653  PAWVLLQFPNEEASHLGVRDISLWVEPNISFRHAVGGFPILKPTPAPSIDYYYENTFPVG 712


>gb|ADN88404.1| polyprotein, partial [Strawberry latent ringspot virus]
          Length = 712

 Score =  929 bits (2401), Expect = 0.0
 Identities = 456/720 (63%), Positives = 543/720 (75%), Gaps = 3/720 (0%)
 Frame = +3

Query: 1170 PLQPARLTRSASYVPIQRAGTKTVLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAA 1349
            PLQPARLTRSASY+P+QR+G KTVLTFEDN A +KEQQP+QARASFSF+ +SYGQQDRAA
Sbjct: 1    PLQPARLTRSASYMPVQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQQDRAA 60

Query: 1350 LPSPPPQKCQFHNKVGCPCAQHTGSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDS 1529
            LPS P  KC FHN+VGCPC QHTG  E SG H E+LVPA+ GGTE  FFSP+ +  P  +
Sbjct: 61   LPSAPSPKCPFHNRVGCPCKQHTGEAEPSGLH-EDLVPAASGGTEAIFFSPKSIPVPGSA 119

Query: 1530 KFVGSHPFSFPVNSNVGTVVYTLPIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQ 1709
            KFVGSHPFSFP+NSNVGT VY+LP+I TSLKDTEWGR+Y+ Y ++R KPTVRL+ S PIQ
Sbjct: 120  KFVGSHPFSFPINSNVGTTVYSLPLISTSLKDTEWGRYYRSYTFMRFKPTVRLVSSAPIQ 179

Query: 1710 AKGLLWLCYDPSETLAKYPSRERALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSTDV 1889
            AKGLLWLCYDP ETLAKYPSRERAL LQG WFMPGRHDS +LT+ ELAT +G+  M++D 
Sbjct: 180  AKGLLWLCYDPCETLAKYPSRERALMLQGVWFMPGRHDSVTLTIDELATLSGYSIMNSDH 239

Query: 1890 NGAFKVVIIKDLANFDVSDYGMELSLYLEVEKIGLGDVIGGGELT---TFYPLRQVVLDY 2060
            NGAFKVVIIKDL NF+V+D GMELSL+L+V+ IG+G    G EL    +F PLRQVV+D+
Sbjct: 240  NGAFKVVIIKDLENFEVADLGMELSLFLDVQDIGMGI---GPELPLTDSFLPLRQVVVDF 296

Query: 2061 ELSTTTSKGKAXXXXXXXXXXAHDEAQFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAG 2240
            +LSTTT KGKA            D AQ+YPSCSSSILENHRYWKGTL LEV+FNLPAM G
Sbjct: 297  DLSTTTPKGKALVIPLNPLLPGFDGAQWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGG 356

Query: 2241 GIAEFAFAYDTQDATEGDAYRRFGSSVVDLRAHRILRARVPXXXXXXXXXXXXXXXFEVK 2420
            G  E  FA ++    E DAYR FGS+VVDLRAHR+LRA+VP               F V 
Sbjct: 357  GTVEMGFANNSYSGWESDAYRYFGSTVVDLRAHRLLRAKVPLYGYGGYLMGGSGSLFAVP 416

Query: 2421 PQTSFGDVLKLVILFTAPLHISDTSRKGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVP 2600
            P T +G  L+ V+LFTAPLHISDT++KGSV++RYLGLED +Y++P TS+GRLNP TTLV 
Sbjct: 417  PLTDYGQSLRFVLLFTAPLHISDTTKKGSVMIRYLGLEDCEYIQPTTSLGRLNPATTLV- 475

Query: 2601 NVVASGGPVIKVGTLEWEEPFISRVPLGLRQKTFRLMTINKWSPSGFLYFPVTPSVHLPR 2780
               ASG PV++VGT +W EP + R+PLGL QK FRL+TI+KW  SGFL+FP+TPS H+P+
Sbjct: 476  ---ASGAPVVQVGTSDWTEPPLLRLPLGLLQKKFRLLTISKWPKSGFLFFPMTPSSHMPK 532

Query: 2781 TAGGFEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATEQFVLPHRSLTFSAVLLSK 2960
             AG FE  +EQ  PLMHRSQEN QW G+L Y+L+ R  GAT Q VLP R + F A +L  
Sbjct: 533  LAGTFEGEVEQHSPLMHRSQENAQWCGSLTYYLSIRYSGATPQGVLPMRPVCFGATVLDN 592

Query: 2961 ILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDHPFVEFTTPPGRWTNTHFGATEQYTWRTC 3140
            IL  PCFV+  TF  ++P+   R+T  L        + TPP RW NTHFGATE Y  RTC
Sbjct: 593  ILDKPCFVEKDTFIQVMPMADPRETIYLPTTESVAFYETPPRRWVNTHFGATESYGVRTC 652

Query: 3141 PVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFVVG 3320
            P WVLLQFP +  + L VRDVSLWVEP+I +RH +GGFP+  P P+P+  YY+ENTF VG
Sbjct: 653  PAWVLLQFPNEEASHLGVRDVSLWVEPNISFRHAVGGFPILKPTPAPSIDYYYENTFPVG 712


>gb|ADN88402.1| polyprotein, partial [Strawberry latent ringspot virus]
          Length = 712

 Score =  926 bits (2394), Expect = 0.0
 Identities = 454/720 (63%), Positives = 543/720 (75%), Gaps = 3/720 (0%)
 Frame = +3

Query: 1170 PLQPARLTRSASYVPIQRAGTKTVLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAA 1349
            PLQPARLTRSASY+PIQR+G KTVLTFEDN A +KEQQP+QARASFSF+ +SYGQQDRAA
Sbjct: 1    PLQPARLTRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQQDRAA 60

Query: 1350 LPSPPPQKCQFHNKVGCPCAQHTGSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDS 1529
            LPS P  KC FHN+VGCPC QHTG  E SG H E+LVPA+ GGTE  FFSP+ +  P  +
Sbjct: 61   LPSAPSPKCPFHNRVGCPCKQHTGEAEPSGLH-EDLVPAASGGTEAIFFSPKSIPVPGGA 119

Query: 1530 KFVGSHPFSFPVNSNVGTVVYTLPIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQ 1709
            KFVGSHPFSFP+NSNVGT VY+LP+I TSLKDTEWGR+Y+ Y ++R KPTVRL+ S PIQ
Sbjct: 120  KFVGSHPFSFPINSNVGTTVYSLPLISTSLKDTEWGRYYRSYTFMRFKPTVRLVSSAPIQ 179

Query: 1710 AKGLLWLCYDPSETLAKYPSRERALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSTDV 1889
            AKGLLWLCYDP ETLAKYPSRERAL LQG WFMPGRHDS +LT+ ELATP+G+  M++D 
Sbjct: 180  AKGLLWLCYDPCETLAKYPSRERALMLQGVWFMPGRHDSVTLTIDELATPSGYSIMNSDH 239

Query: 1890 NGAFKVVIIKDLANFDVSDYGMELSLYLEVEKIGLGDVIGGGELT---TFYPLRQVVLDY 2060
            NGAFKVVIIK L NF+V+D GMELSL+L+V+ IG+G    G EL    +F PLRQVV+D+
Sbjct: 240  NGAFKVVIIKALENFEVADLGMELSLFLDVQDIGMGI---GPELPLTDSFLPLRQVVVDF 296

Query: 2061 ELSTTTSKGKAXXXXXXXXXXAHDEAQFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAG 2240
            +LSTTT KGKA            D AQ+YPSCSSSILENHRYWKGTL LEV+FNLPAM G
Sbjct: 297  DLSTTTPKGKALVVPLNPLLPGFDGAQWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGG 356

Query: 2241 GIAEFAFAYDTQDATEGDAYRRFGSSVVDLRAHRILRARVPXXXXXXXXXXXXXXXFEVK 2420
            G  E  FA ++    E DAYR FGS+VVDLRAHR+LRA+VP               F V 
Sbjct: 357  GTVEMGFANNSYSGWESDAYRYFGSTVVDLRAHRLLRAKVPLYGYGGYLMGGSGSLFAVP 416

Query: 2421 PQTSFGDVLKLVILFTAPLHISDTSRKGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVP 2600
            P T +G  L+ V+LFTAPLHISDT++KGSV++R+LGLED +Y++P TS+GRLNP TTLV 
Sbjct: 417  PLTDYGQSLRFVLLFTAPLHISDTTKKGSVMIRFLGLEDCEYIQPTTSLGRLNPATTLV- 475

Query: 2601 NVVASGGPVIKVGTLEWEEPFISRVPLGLRQKTFRLMTINKWSPSGFLYFPVTPSVHLPR 2780
               ASG PV++VGT +W EP + R+PLGL QK FRL+TI+KW  SGFL+FP+TPS H+P+
Sbjct: 476  ---ASGAPVVQVGTSDWTEPPLLRLPLGLLQKKFRLLTISKWPKSGFLFFPMTPSSHMPK 532

Query: 2781 TAGGFEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATEQFVLPHRSLTFSAVLLSK 2960
             AG FE  +EQ  PLMHRSQEN QW G+L Y+L+ R  GAT + VLP R + F A +L  
Sbjct: 533  LAGTFEGEVEQHSPLMHRSQENAQWCGSLTYYLSIRYSGATPRGVLPMRPVCFGATVLDN 592

Query: 2961 ILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDHPFVEFTTPPGRWTNTHFGATEQYTWRTC 3140
            IL  PCFV+  TF  ++P+   R+T  L        + TPP RW NTHFGATE Y  RTC
Sbjct: 593  ILDKPCFVEKDTFIQVMPMADPRETIYLPTTESVAFYETPPRRWVNTHFGATESYGVRTC 652

Query: 3141 PVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFVVG 3320
            P WVLLQFP +  + L +RDVSLWVEP+I +RH +GGFP+  P P+P+  YY+ENTF VG
Sbjct: 653  PAWVLLQFPNEEASHLGIRDVSLWVEPNISFRHAVGGFPILKPTPAPSIDYYYENTFPVG 712


>ref|YP_227374.1| putative 40 kDa movement protein [Strawberry latent ringspot virus]
          Length = 366

 Score =  610 bits (1572), Expect = 0.0
 Identities = 297/366 (81%), Positives = 328/366 (89%)
 Frame = +3

Query: 339  MTSFFRKRSTQEMPNVPSYSAKELEVLKAAITECGINYADVVRAAQTESGKMAILTAANT 518
            M SFF +RST EMP+VPSYS +E+EVLK+AITECGINYADVVRAAQTESGK+AILTAANT
Sbjct: 1    MASFFSRRSTPEMPSVPSYSPREMEVLKSAITECGINYADVVRAAQTESGKLAILTAANT 60

Query: 519  SQLKSLIATTSTSNALARLKEKPKAVVHVSEGVGRQVLCDDKLTHQTTVVHTPEPLFXXX 698
            + LKSL+ATT+T +A  RL E PKA+VHV+EGVG+QVLCDDKLTHQTTVVHTP+ ++   
Sbjct: 61   NSLKSLVATTTTQSAFRRLSESPKAIVHVAEGVGKQVLCDDKLTHQTTVVHTPKKVYDHM 120

Query: 699  XXXXXXXXXDTGEEEPKYRSADVCTIQLGVTSHLSGHSNQIAGVVLLDGNRSTQEQAVLG 878
                     DT EEEPKYRSAD+CTIQLGVTSHLSGHSNQIAG+VLLDGNR+TQEQAVLG
Sbjct: 121  RSKRLKKTKDTDEEEPKYRSADICTIQLGVTSHLSGHSNQIAGIVLLDGNRATQEQAVLG 180

Query: 879  IGVLPLYEAHSHALFAPRLNIHYDDPNFVDRLQLLTTFSDDVLGGGSPAMSYSTISVVRH 1058
            IGVLPLYEAHSHALFAPRLNIHYDDPNFVDRLQLLTTFSDDVLGGGSPAMSYSTISVVRH
Sbjct: 181  IGVLPLYEAHSHALFAPRLNIHYDDPNFVDRLQLLTTFSDDVLGGGSPAMSYSTISVVRH 240

Query: 1059 NIVDAHYLPEPLPYSKLKEKYPCGVRGLSNFQAAEVAPLQPARLTRSASYVPIQRAGTKT 1238
            NI DAH+LPEPLPYSKLKEKYP G++GLSNFQAAE+APLQPARLTRSASY+PI+R+G KT
Sbjct: 241  NIADAHFLPEPLPYSKLKEKYPSGLKGLSNFQAAEIAPLQPARLTRSASYMPIRRSGAKT 300

Query: 1239 VLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAALPSPPPQKCQFHNKVGCPCAQHT 1418
            VLTFEDN A ++EQQP+QARASFSF+ ISYGQQDRAALP  P  KC FHN+VGCPC QHT
Sbjct: 301  VLTFEDNQASLREQQPLQARASFSFSGISYGQQDRAALPFAPSPKCSFHNRVGCPCKQHT 360

Query: 1419 GSTEAS 1436
            G  EAS
Sbjct: 361  GEAEAS 366


>ref|YP_227375.1| large coat protein [Strawberry latent ringspot virus]
          Length = 388

 Score =  521 bits (1341), Expect = e-171
 Identities = 256/384 (66%), Positives = 298/384 (77%)
 Frame = +3

Query: 1446 HEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHPFSFPVNSNVGTVVYTLPIIKTSLKD 1625
            HEELVPA+ GGTE  FFSP+ +  P  +KFVGSHPFSFP+NSNVGT VYTLP+I+TSLKD
Sbjct: 3    HEELVPAASGGTEAIFFSPRSIPLPGSAKFVGSHPFSFPINSNVGTTVYTLPLIRTSLKD 62

Query: 1626 TEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLAKYPSRERALALQGTWF 1805
            TEWGR+YK Y ++R KPTVRL+ S PIQAKGLLWLCYDP ETLAKYPSRERAL LQGTWF
Sbjct: 63   TEWGRYYKSYTFMRFKPTVRLVSSAPIQAKGLLWLCYDPCETLAKYPSRERALMLQGTWF 122

Query: 1806 MPGRHDSTSLTVQELATPAGFCDMSTDVNGAFKVVIIKDLANFDVSDYGMELSLYLEVEK 1985
            MPGRHDS +LT+ ELATP+G+  M++D NGAFKVVIIKDL NF+V+D GMELSL+L+V+ 
Sbjct: 123  MPGRHDSVTLTIDELATPSGYSIMTSDHNGAFKVVIIKDLENFEVADLGMELSLFLDVQD 182

Query: 1986 IGLGDVIGGGELTTFYPLRQVVLDYELSTTTSKGKAXXXXXXXXXXAHDEAQFYPSCSSS 2165
            IG+G         +F PLRQVV+D++LSTTT KGKA            D AQ+YPSCSSS
Sbjct: 183  IGMGMGPEMPLTDSFLPLRQVVVDFDLSTTTPKGKALVVPLNPLLPGFDGAQWYPSCSSS 242

Query: 2166 ILENHRYWKGTLSLEVVFNLPAMAGGIAEFAFAYDTQDATEGDAYRRFGSSVVDLRAHRI 2345
            ILENHRYWKGTL LEV+FNLPAM GG  E  FA D+    E DAYR FGS+VVDLRAHR+
Sbjct: 243  ILENHRYWKGTLVLEVIFNLPAMGGGTVEMGFANDSCSGRESDAYRYFGSTVVDLRAHRL 302

Query: 2346 LRARVPXXXXXXXXXXXXXXXFEVKPQTSFGDVLKLVILFTAPLHISDTSRKGSVLVRYL 2525
            LRARVP               F V P T +G  L+ V+LFTAPLHISDT++KGSV+VRYL
Sbjct: 303  LRARVPLHGYGGYLMGGSGSLFAVPPLTDYGQSLRFVLLFTAPLHISDTTKKGSVMVRYL 362

Query: 2526 GLEDLDYLEPATSIGRLNPKTTLV 2597
            GLED +Y++P TS+GRLNP TTLV
Sbjct: 363  GLEDCEYIQPTTSLGRLNPATTLV 386


>ref|YP_227376.1| small coat protein [Strawberry latent ringspot virus]
          Length = 235

 Score =  280 bits (716), Expect = 4e-83
 Identities = 127/235 (54%), Positives = 161/235 (68%)
 Frame = +3

Query: 2616 GGPVIKVGTLEWEEPFISRVPLGLRQKTFRLMTINKWSPSGFLYFPVTPSVHLPRTAGGF 2795
            G PV++VGT +W EP + R+PLGL Q+ FRL+TI+KW  SGFL+FP TPS H+P+  G F
Sbjct: 1    GAPVVQVGTSDWVEPPLFRLPLGLLQRRFRLLTISKWPKSGFLFFPTTPSSHIPKLVGTF 60

Query: 2796 EASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATEQFVLPHRSLTFSAVLLSKILPAP 2975
            E  +EQ  PLMHRSQEN QW G+L Y+L+ R  GAT Q VLP R +   A +L  I+  P
Sbjct: 61   EGEVEQHSPLMHRSQENAQWSGSLTYYLSIRYSGATPQGVLPLRPVCLGATILDNIMGKP 120

Query: 2976 CFVDNSTFKPLLPLLSVRDTFSLGQDHPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWVL 3155
            CF++  TF  ++P+   R+T  L        + TPP RW NTHFGATE Y  RTCP WVL
Sbjct: 121  CFIEKDTFVQVMPMADPRETIYLPTTDSVASYVTPPRRWVNTHFGATEMYGVRTCPAWVL 180

Query: 3156 LQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFVVG 3320
            LQFP +  + L VRD+SLWVEP + +RH +GGFP+  P P+PA  YY+ENTF VG
Sbjct: 181  LQFPNEEASHLGVRDISLWVEPKVTFRHAVGGFPILKPTPAPAIDYYYENTFPVG 235


>gb|ABC58719.1| coat protein, partial [Strawberry latent ringspot virus]
            gi|84380737|gb|ABC58720.1| coat protein, partial
            [Strawberry latent ringspot virus]
          Length = 165

 Score =  264 bits (675), Expect = 2e-78
 Identities = 123/166 (74%), Positives = 142/166 (85%)
 Frame = +3

Query: 1170 PLQPARLTRSASYVPIQRAGTKTVLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAA 1349
            PLQPARLTRSASY+PIQR+G KTVLTFEDN A +KEQQP+QARASFSF+ +SYGQQDRA+
Sbjct: 1    PLQPARLTRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQQDRAS 60

Query: 1350 LPSPPPQKCQFHNKVGCPCAQHTGSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDS 1529
            LPS P  KC FHN+VGCPC QHTG  EASG  HEEL+PA+ GGTE  FFSP+ +  P  +
Sbjct: 61   LPSAPSPKCSFHNRVGCPCKQHTGEAEASG-LHEELIPAASGGTEAIFFSPKSIPLPGSA 119

Query: 1530 KFVGSHPFSFPVNSNVGTVVYTLPIIKTSLKDTEWGRFYKGYRYLR 1667
            KFVGSHPFSFP+NSNVGT VYTLP+I+TSLKDTEWGR+YK Y ++R
Sbjct: 120  KFVGSHPFSFPINSNVGTTVYTLPLIRTSLKDTEWGRYYKSYTFMR 165


>gb|ABC58721.2| coat protein, partial [Strawberry latent ringspot virus]
          Length = 165

 Score =  263 bits (673), Expect = 4e-78
 Identities = 123/166 (74%), Positives = 142/166 (85%)
 Frame = +3

Query: 1170 PLQPARLTRSASYVPIQRAGTKTVLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAA 1349
            PLQPARLTRSASY+PIQR+G KTVLTFEDN A +KEQQP+QARASFSF+ +SYGQ DRAA
Sbjct: 1    PLQPARLTRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQHDRAA 60

Query: 1350 LPSPPPQKCQFHNKVGCPCAQHTGSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDS 1529
            LPS PP KC FHN+VGCPC QHTG TE+SG  HEELVPAS GGTE  FFSP+ +  P  +
Sbjct: 61   LPSAPPSKCSFHNRVGCPCKQHTGETESSG-LHEELVPASSGGTEAIFFSPKSIPVPGSA 119

Query: 1530 KFVGSHPFSFPVNSNVGTVVYTLPIIKTSLKDTEWGRFYKGYRYLR 1667
            KFVGS+PFSFP+NSNVGT VY+LP+I TSLKDTEWGR+Y+ Y ++R
Sbjct: 120  KFVGSYPFSFPINSNVGTTVYSLPLISTSLKDTEWGRYYRSYTFMR 165


>gb|AAR99477.1| coat protein, partial [Strawberry latent ringspot virus]
            gi|41745996|gb|AAS10194.1| coat protein, partial
            [Strawberry latent ringspot virus]
          Length = 165

 Score =  261 bits (667), Expect = 3e-77
 Identities = 123/166 (74%), Positives = 141/166 (84%)
 Frame = +3

Query: 1170 PLQPARLTRSASYVPIQRAGTKTVLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAA 1349
            PLQPARLTRSASY+PI+R+G KTVLTFEDN A ++EQQP+QARASFSF+ ISYGQQDRAA
Sbjct: 1    PLQPARLTRSASYMPIRRSGAKTVLTFEDNQASLREQQPLQARASFSFSGISYGQQDRAA 60

Query: 1350 LPSPPPQKCQFHNKVGCPCAQHTGSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDS 1529
            LP  P  KC FHN+VGCPC QHTG  EASG  HEELVPA+ GGTE  FFSP+ +  P  +
Sbjct: 61   LPFAPSPKCSFHNRVGCPCKQHTGEAEASG-LHEELVPAASGGTEAIFFSPKSIPLPGSA 119

Query: 1530 KFVGSHPFSFPVNSNVGTVVYTLPIIKTSLKDTEWGRFYKGYRYLR 1667
            KFVGSHPFSFP+NSNVGT VYTLP+I+TSLKDTEWGR+YK Y ++R
Sbjct: 120  KFVGSHPFSFPINSNVGTTVYTLPLIRTSLKDTEWGRYYKSYTFMR 165


>gb|AHB30925.1| coat protein, partial [Strawberry latent ringspot virus]
          Length = 152

 Score =  245 bits (626), Expect = 7e-72
 Identities = 115/153 (75%), Positives = 130/153 (84%)
 Frame = +3

Query: 1191 TRSASYVPIQRAGTKTVLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAALPSPPPQ 1370
            TRSASY+PIQR+G KTVLTFEDN A +KEQQP+QARASFSF+ +SYGQ DRAALPS PPQ
Sbjct: 1    TRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQHDRAALPSAPPQ 60

Query: 1371 KCQFHNKVGCPCAQHTGSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHP 1550
            KC FHN+VGCPC QHTG  E SG  HEELVPAS GGTE  FFSP+ +  P  +KFVGSHP
Sbjct: 61   KCSFHNRVGCPCTQHTGEAEPSG-LHEELVPASSGGTEAIFFSPKSIPVPGSAKFVGSHP 119

Query: 1551 FSFPVNSNVGTVVYTLPIIKTSLKDTEWGRFYK 1649
            FSFP+NSNVGT VY+LP+I TSLKDTEWGR+Y+
Sbjct: 120  FSFPINSNVGTTVYSLPLISTSLKDTEWGRYYR 152


>gb|AHB30924.1| coat protein, partial [Strawberry latent ringspot virus]
            gi|560369183|gb|AHB30926.1| coat protein, partial
            [Strawberry latent ringspot virus]
          Length = 152

 Score =  243 bits (621), Expect = 3e-71
 Identities = 114/153 (74%), Positives = 131/153 (85%)
 Frame = +3

Query: 1191 TRSASYVPIQRAGTKTVLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAALPSPPPQ 1370
            TRSASY+PIQR+G KTVLTFEDN A ++EQQP+QARASFSF+ +SYGQQDRAALPS P  
Sbjct: 1    TRSASYMPIQRSGAKTVLTFEDNQASLREQQPLQARASFSFSGVSYGQQDRAALPSAPSP 60

Query: 1371 KCQFHNKVGCPCAQHTGSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHP 1550
            KC FHN+VGCPC QHTG  EASG  HEELVPA+ GGTE  FFSP+ +  P  +KFVGSHP
Sbjct: 61   KCSFHNRVGCPCKQHTGEAEASG-LHEELVPAASGGTEAIFFSPKSIPLPGSAKFVGSHP 119

Query: 1551 FSFPVNSNVGTVVYTLPIIKTSLKDTEWGRFYK 1649
            FSFP+NSNVGT VYTLP+I+TSLKDTEWGR+Y+
Sbjct: 120  FSFPINSNVGTTVYTLPLIRTSLKDTEWGRYYR 152


>gb|AHB30923.1| coat protein, partial [Strawberry latent ringspot virus]
          Length = 152

 Score =  241 bits (616), Expect = 2e-70
 Identities = 114/153 (74%), Positives = 130/153 (84%)
 Frame = +3

Query: 1191 TRSASYVPIQRAGTKTVLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAALPSPPPQ 1370
            TRSASY+PIQR+G KTVLTFEDN A ++EQQP+QARASFSF+ +SYGQQDRAALPS P  
Sbjct: 1    TRSASYMPIQRSGAKTVLTFEDNQASLREQQPLQARASFSFSGVSYGQQDRAALPSAPSP 60

Query: 1371 KCQFHNKVGCPCAQHTGSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHP 1550
            KC FHN+VGCPC QHTG  EASG  HEELVPA+ GGTE  FFSP+ +  P  +K VGSHP
Sbjct: 61   KCSFHNRVGCPCKQHTGEAEASG-LHEELVPAASGGTEAIFFSPKSIPLPGSAKSVGSHP 119

Query: 1551 FSFPVNSNVGTVVYTLPIIKTSLKDTEWGRFYK 1649
            FSFP+NSNVGT VYTLP+I+TSLKDTEWGR+YK
Sbjct: 120  FSFPINSNVGTTVYTLPLIRTSLKDTEWGRYYK 152


>gb|AEF97400.1| coat protein, partial [Strawberry latent ringspot virus]
          Length = 148

 Score =  231 bits (590), Expect = 5e-67
 Identities = 107/147 (72%), Positives = 123/147 (83%)
 Frame = +3

Query: 1215 IQRAGTKTVLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAALPSPPPQKCQFHNKV 1394
            IQR+G KTVLTFEDN A +KEQQP+QARASFSF+ +SYGQ DRAALPS PP KC FHN+V
Sbjct: 2    IQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQHDRAALPSAPPSKCSFHNRV 61

Query: 1395 GCPCAQHTGSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHPFSFPVNSN 1574
            GCPC QHTG TE SG  HEEL+PA+ GGTE  FFSP+ +  P  +KFVGSHPFSFP+NSN
Sbjct: 62   GCPCKQHTGETEPSG-LHEELIPAASGGTEAIFFSPKSIPVPGGAKFVGSHPFSFPINSN 120

Query: 1575 VGTVVYTLPIIKTSLKDTEWGRFYKGY 1655
            VGT VY+LP+I TSLKDTEWGR+Y+ Y
Sbjct: 121  VGTTVYSLPLISTSLKDTEWGRYYRSY 147