BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia27_contig00024285
         (1458 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]   229   5e-62
emb|CAN82769.1| hypothetical protein VITISV_037882 [Vitis vinifera]   220   7e-59
emb|CAN59952.1| hypothetical protein VITISV_006720 [Vitis vinifera]   219   1e-58
gb|KYP44960.1| Retrovirus-related Pol polyprotein from transposo...   206   8e-57
emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera]   207   1e-54
gb|EEC80484.1| hypothetical protein OsI_22718 [Oryza sativa Indi...   199   2e-54
emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]   206   2e-54
emb|CDH30699.1| putative Ty1-copia-like retrotransposon [Cercis ...   201   6e-54
ref|XP_010241784.1| PREDICTED: uncharacterized protein LOC104586...   195   8e-54
ref|XP_015696936.1| PREDICTED: uncharacterized protein LOC107305...   198   9e-54
ref|XP_010656394.1| PREDICTED: uncharacterized protein LOC104880...   192   1e-52
gb|KYP75940.1| Retrovirus-related Pol polyprotein from transposo...   201   2e-52
emb|CAH67640.1| H0102C09.1 [Oryza sativa Indica Group]                200   3e-52
gb|ABF95616.1| retrotransposon protein, putative, Ty1-copia subc...   197   2e-51
ref|XP_012840817.1| PREDICTED: uncharacterized protein LOC105961...   187   3e-51
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group...   196   9e-51
ref|XP_008653324.1| PREDICTED: uncharacterized protein LOC103633...   186   1e-50
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...   195   2e-50
gb|ACL54615.1| unknown [Zea mays]                                     184   4e-50
gb|AAK09230.1|AC084320_17 putative copia-like retrotransposon Ho...   192   2e-49

>emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]
          Length = 1432

 Score =  229 bits (583), Expect = 5e-62
 Identities = 143/428 (33%), Positives = 222/428 (51%), Gaps = 8/428 (1%)
 Frame = +1

Query: 199  QPQSQLLTIKLGDNNYLIWKQQVWAAVNGYGLEGFLTGESTKPEKYTESTSGNKTRVINP 378
            Q  +  L +KL   NY++W+ Q+   +   G E F+ G S  PEK  + + G    V+NP
Sbjct: 30   QMLNHTLPVKLDRTNYILWRSQIDNVIFANGFEDFIDGTSICPEK--DLSPG----VMNP 83

Query: 379  AYVLWNRQDQXXXXXXXXXXXENVLISTVGLTTAKDIWDGLQIEFATRNTAKVMQFRLQL 558
            A+V W RQD+             ++   +G  T+   W+ L+  F++ + A++MQ RL+L
Sbjct: 84   AFVAWRRQDRTILSWIYSSLTPGIMAQIIGHNTSHSAWNALESIFSSSSRARIMQLRLEL 143

Query: 559  QTMKKGNTPMKDYLNKIKS*CDILNSAGEEIPERVQILYILGGLGPEYDSVMVSITARAE 738
            Q+ KKG+  M DY+ KIK   D L + GE + E+ Q++ +LGGLG +Y++V+ +I  R +
Sbjct: 144  QSTKKGSMSMIDYIMKIKGAADNLAAIGEPVSEQDQVMNLLGGLGSDYNAVVTAINIRDD 203

Query: 739  PCSLREVHAILLSFENRLESYE-------NHGNADNSQFYVNLTTQSQAHSYRRGGFNQA 897
              SL  +H++LL+FE+RLE          N+ ++ N++         +   Y     N  
Sbjct: 204  KISLEAIHSMLLAFEHRLEQQSSIEQMSANYASSSNNRGGGRKFNGGRGQGYSPNNNNYT 263

Query: 898  TRGRGVTQNTRGGRS-QGRTGNYXXXXXXXXXXXXXXCQICHYNNHTADM*FYRTDLNFV 1074
             RGRG     RGGR+ QG   N               CQ+C    HTA + ++R D++F 
Sbjct: 264  YRGRG-----RGGRNGQGGRQN-------SSPSEKPQCQLCGKFGHTAQICYHRFDISF- 310

Query: 1075 PXXXXXXXXXXXXXTQQTGNSLNPSVHVTNIGNSGNEIQQDMNWYPDSGATNHVTYDLGN 1254
                          +   GN  N    V +  N+      D +WY DSGA++H+T +LGN
Sbjct: 311  -----QGGQTTISHSLNNGNQNNIPAMVASASNN----PADESWYLDSGASHHLTQNLGN 361

Query: 1255 LNIASEYQGGDKVQLGNGSGLAISHLGSSTVKPSSCVNSHVFHLKNLLHVPHITKNLISV 1434
            L   S Y G DKV +GNG  L+IS++GS  +      ++H F LK + HVP I+ NLISV
Sbjct: 362  LTSTSPYTGTDKVTIGNGKHLSISNIGSKQLHS----HTHSFRLKKVFHVPFISANLISV 417

Query: 1435 SQFAFDNH 1458
            ++F  +N+
Sbjct: 418  AKFCSENN 425


>emb|CAN82769.1| hypothetical protein VITISV_037882 [Vitis vinifera]
          Length = 2220

 Score =  220 bits (560), Expect = 7e-59
 Identities = 138/425 (32%), Positives = 218/425 (51%), Gaps = 5/425 (1%)
 Frame = +1

Query: 199  QPQSQLLTIKLGDNNYLIWKQQVWAAVNGYGLEGFLTGESTKPEKYTESTSGNKTRVINP 378
            Q  +  L +KL   NY++WK Q+   V   G E F+ G S  P+K  E +SG    +INP
Sbjct: 872  QMLNHTLLVKLDRTNYILWKSQIDNVVFANGFEDFIDGFSICPDK--ELSSG----LINP 925

Query: 379  AYVLWNRQDQXXXXXXXXXXXENVLISTVGLTTAKDIWDGLQIEFATRNTAKVMQFRLQL 558
            A+V W RQD+             ++   +G  ++   W+ L+  F++ + A++MQ RL+L
Sbjct: 926  AFVAWRRQDRTILSWLYSSLTPAIMAQIIGHNSSHSAWNALEKTFSSSSRARIMQLRLEL 985

Query: 559  QTMKKGNTPMKDYLNKIKS*CDILNSAGEEIPERVQILYILGGLGPEYDSVMVSITARAE 738
            Q+ KKG+  M DY+ K+K   D L + GE + E+ Q++ +LGGLG +Y++V+ +I  R +
Sbjct: 986  QSTKKGSLSMIDYIMKVKGAADSLAAIGEPVSEQDQVMNLLGGLGSDYNAVVTAINIRDD 1045

Query: 739  PCSLREVHAILLSFENRLESYENHGNADNSQFYVNLTTQSQAHSYRRGGFNQATRGRGVT 918
              S+  VH++LL+FE+RLE         + + +  ++    + S  RGG  +   GRG  
Sbjct: 1046 KISIEAVHSMLLAFEHRLE------QQSSIKQFSPISANYASSSNNRGGGRRYNGGRGQN 1099

Query: 919  QNTRGG----RSQGRTGNY-XXXXXXXXXXXXXXCQICHYNNHTADM*FYRTDLNFVPXX 1083
                      R  GR G Y               CQ+C    HT  + ++R D+++    
Sbjct: 1100 HTPNISNYTYRGCGRGGRYGQNGRHNSNSSEKPQCQLCGKFGHTVQICYHRFDISY---- 1155

Query: 1084 XXXXXXXXXXXTQQTGNSLNPSVHVTNIGNSGNEIQQDMNWYPDSGATNHVTYDLGNLNI 1263
                            N+ NP+     + +S N    D  WY DSGA++H+T  +GNL  
Sbjct: 1156 -----QSSQSSNTSPSNAGNPNSIPAMVASSNN--LADDTWYLDSGASHHLTQSVGNLTS 1208

Query: 1264 ASEYQGGDKVQLGNGSGLAISHLGSSTVKPSSCVNSHVFHLKNLLHVPHITKNLISVSQF 1443
            +S Y G DKV +GNG  L+IS+ GS  +      +S  FH+K + HVP I+ NLISV++F
Sbjct: 1209 SSPYTGIDKVTIGNGKHLSISNTGSHCL----LSDSRYFHVKKVFHVPFISSNLISVAKF 1264

Query: 1444 AFDNH 1458
              +N+
Sbjct: 1265 CSNNN 1269


>emb|CAN59952.1| hypothetical protein VITISV_006720 [Vitis vinifera]
          Length = 1365

 Score =  219 bits (558), Expect = 1e-58
 Identities = 138/417 (33%), Positives = 208/417 (49%), Gaps = 3/417 (0%)
 Frame = +1

Query: 217  LTIKLGDNNYLIWKQQVWAAVNGYGLEGFLTGESTKPEKYTESTSGNKTRVINPAYVLWN 396
            L +KL   NY++W+ Q+   +   G E F+ G S  PEK            INPA+V W 
Sbjct: 33   LPVKLDRTNYILWRSQIDNVIFANGFEDFIDGTSXCPEKELRPXE------INPAFVAWR 86

Query: 397  RQDQXXXXXXXXXXXENVLISTVGLTTAKDIWDGLQIEFATRNTAKVMQFRLQLQTMKKG 576
            RQD+             ++   +G  ++   W+ L+  F++ + A++MQ RL+ Q+ KKG
Sbjct: 87   RQDRTILSWIYSSLTPGIMAQIIGHNSSHSAWNALEKIFSSCSRARIMQLRLEFQSTKKG 146

Query: 577  NTPMKDYLNKIKS*CDILNSAGEEIPERVQILYILGGLGPEYDSVMVSITARAEPCSLRE 756
            +  M DY+ K+K   D L + GE + E+ QI+ +LGGLG +Y++V+ +I  R +  SL  
Sbjct: 147  SMSMIDYIMKVKGAADSLAAIGEPVSEQDQIMNLLGGLGSDYNAVVTAINIREDKISLEA 206

Query: 757  VHAILLSFENRLESYENHGNADNSQFYVNLTTQSQAHSYRRGGFNQATRGRG--VTQNTR 930
            VH++LL+FE RL   E  G+ +       ++    + S  RGG  +   GRG        
Sbjct: 207  VHSMLLAFEQRL---EQQGSIEQ---LPAMSANYASSSNNRGGGRKYNGGRGPNFMMTNS 260

Query: 931  GGRSQGRTGNY-XXXXXXXXXXXXXXCQICHYNNHTADM*FYRTDLNFVPXXXXXXXXXX 1107
              R +GR G Y               CQ+C    HT  + ++R D+ F            
Sbjct: 261  NFRGRGRGGRYGQSGRQNSSSSERPQCQLCGKFGHTVQVCYHRFDITF---------QST 311

Query: 1108 XXXTQQTGNSLNPSVHVTNIGNSGNEIQQDMNWYPDSGATNHVTYDLGNLNIASEYQGGD 1287
               T    NS N +     + +S N    D NWY DSGA++H+T ++ NL  A+ Y G D
Sbjct: 312  QNNTTGVSNSGNSNSMPAMVASSNN--LADDNWYLDSGASHHLTQNVANLTNATPYTGAD 369

Query: 1288 KVQLGNGSGLAISHLGSSTVKPSSCVNSHVFHLKNLLHVPHITKNLISVSQFAFDNH 1458
            KV +GNG  L IS+ G + +      N H F LK + HVP I+ NLISV++F  DN+
Sbjct: 370  KVTIGNGKHLTISNTGFTRL----FSNPHSFQLKKVFHVPFISANLISVAKFCSDNN 422


>gb|KYP44960.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 517

 Score =  206 bits (523), Expect = 8e-57
 Identities = 147/441 (33%), Positives = 221/441 (50%), Gaps = 17/441 (3%)
 Frame = +1

Query: 184  SETVIQPQS--QLLTIKLGDNNYLIWKQQVWAAVNGYGLEGFLTGESTKPEKYTESTSGN 357
            SET   PQ+    ++IKL D N+L+W+QQ+ A V G  L  +L  E   P+K+ ES    
Sbjct: 8    SETSFNPQTFQTPISIKLDDENFLVWQQQILATVRGLKLNKYLHEEHV-PKKF-ESNEHE 65

Query: 358  KTRVINPAYVLWNRQDQXXXXXXXXXXXENVLISTVGLTTAKDIWDGLQIEFATRNTAKV 537
            K   I+ A++ + +QDQ             +L   VGL  +  IW  L++ +A++  AKV
Sbjct: 66   KNGTISKAFLNYEQQDQLLVAWLLASMTAPILTKMVGLQQSWQIWKRLEVYYASQTRAKV 125

Query: 538  MQFRLQLQTMKKGNTPMKDYLNKIKS*CDILNSAGEEIPERVQILYILGGLGPEYDSVMV 717
             + ++QL+ +KK  + + +YL  IK   D L + G  I +   I  IL GL  +YDS + 
Sbjct: 126  KKLKVQLRMIKKDKS-ISEYLLAIKKIVDSLAAIGSAISDDDHIEAILDGLPEDYDSFVT 184

Query: 718  SITARAEPCSLREVHAILLSFENRLESYENHGNADNSQFYVNLTTQSQAHSYR------- 876
            ++T+R +P ++ ++ A+L++ E R   +E H  AD++    N  +     S R       
Sbjct: 185  AVTSRLDPYTVDDIEALLMAQEER---FEKHKKADSNLVLANTVSGPSYPSGRGRGENSN 241

Query: 877  -RGGFNQATRG--RGVTQNTRGGRSQGRTGNYXXXXXXXXXXXXXX-----CQICHYNNH 1032
             RGG+N   +   RG   + RGGR     GN                    CQIC  + H
Sbjct: 242  FRGGYNNRGKSNFRGGYNSNRGGRYNNGRGNGRLNWGQTSTNSWNQNNRPQCQICGKHGH 301

Query: 1033 TADM*FYRTDLNFVPXXXXXXXXXXXXXTQQTGNSLNPSVHVTNIGNSGNEIQQDMNWYP 1212
             A   + R + +F               TQ  G S +    +            D  WYP
Sbjct: 302  LAIDCWQRFNQDF-------QGPPQANQTQYQGFSQSDQAFMAT-----PTTVLDPLWYP 349

Query: 1213 DSGATNHVTYDLGNLNIASEYQGGDKVQLGNGSGLAISHLGSSTVKPSSCVNSHVFHLKN 1392
            DSGA++H+T D  NL++ ++Y G D+V++GNGSGL+I H+G+S    S   N+H F +  
Sbjct: 350  DSGASHHITNDESNLSVKTDYTGNDRVKIGNGSGLSIKHIGNSKFYDSES-NNH-FVMNQ 407

Query: 1393 LLHVPHITKNLISVSQFAFDN 1455
            LLHVP ITKNL+SVSQF  DN
Sbjct: 408  LLHVPSITKNLLSVSQFCRDN 428


>emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera]
          Length = 1402

 Score =  207 bits (528), Expect = 1e-54
 Identities = 137/417 (32%), Positives = 204/417 (48%), Gaps = 3/417 (0%)
 Frame = +1

Query: 217  LTIKLGDNNYLIWKQQVWAAVNGYGLEGFLTGESTKPEKYTESTSGNKTRVINPAYVLWN 396
            L +KL   NY++W+ Q+   +   G E F+ G S  PEK  E   G     INPA+V   
Sbjct: 33   LPVKLDRTNYILWRSQIDNVIFANGFEDFIDGTSVCPEK--ELRPGE----INPAFVAXR 86

Query: 397  RQDQXXXXXXXXXXXENVLISTVGLTTAKDIWDGLQIEFATRNTAKVMQFRLQLQTMKKG 576
            RQD+             ++   +G  ++   W+ L+  F++ + A++MQ  L+ Q+ KKG
Sbjct: 87   RQDRTILSWIYSSLTPGIMAQIIGHNSSHSAWNALEKIFSSCSRARIMQLXLEFQSTKKG 146

Query: 577  NTPMKDYLNKIKS*CDILNSAGEEIPERVQILYILGGLGPEYDSVMVSITARAEPCSLRE 756
            +  M DY+ K+K   D L + GE + E+ QI+ +LGGLG +Y++V+ +I  R +  SL  
Sbjct: 147  SMSMIDYIMKVKGAADSLAAIGEPVSEQDQIMNLLGGLGSDYNAVVTAINIREDKISLEA 206

Query: 757  VHAILLSFENRLESYENHGNADNSQFYVNLTTQSQAHSYRRGGFNQATRGRG--VTQNTR 930
            VH++LL+FE RL   E  G+ +       ++    + S  RGG  +   GRG        
Sbjct: 207  VHSMLLAFEQRL---EQQGSIEQ---LPAMSANYASXSNNRGGGRKYNGGRGPNFMMTNS 260

Query: 931  GGRSQGRTGNY-XXXXXXXXXXXXXXCQICHYNNHTADM*FYRTDLNFVPXXXXXXXXXX 1107
              R +GR   Y               CQ+C    HT  + ++R D+ F            
Sbjct: 261  NFRGRGRGXRYGQSGRQNSSSSERPQCQLCGKFGHTVQVCYHRFDITF---------QST 311

Query: 1108 XXXTQQTGNSLNPSVHVTNIGNSGNEIQQDMNWYPDSGATNHVTYDLGNLNIASEYQGGD 1287
               T    NS N +     +  S N    D NWY DSGA++H+T ++ NL  A+ Y G D
Sbjct: 312  QNNTTGVSNSGNSNXMPAMVAXSNN--XADDNWYLDSGASHHLTQNVANLTNATPYTGAD 369

Query: 1288 KVQLGNGSGLAISHLGSSTVKPSSCVNSHVFHLKNLLHVPHITKNLISVSQFAFDNH 1458
            KV +GNG  L I    S+T       N H F LK + HVP I+ NLISV++F  DN+
Sbjct: 370  KVTIGNGKHLTI----SNTXFTRLFSNPHSFQLKKVFHVPFISANLISVAKFCSDNN 422


>gb|EEC80484.1| hypothetical protein OsI_22718 [Oryza sativa Indica Group]
          Length = 506

 Score =  199 bits (506), Expect = 2e-54
 Identities = 128/419 (30%), Positives = 193/419 (46%), Gaps = 9/419 (2%)
 Frame = +1

Query: 226  KLGDNNYLIWKQQVWAAVNGYGLEGFLTGESTKPEKYTESTSGNKT--RVINPAYVLWNR 399
            KL   NY +W  QV AA+ G  L+G +TG +  P    E T+ +KT  +++NPAY  W  
Sbjct: 22   KLTKGNYALWSAQVLAAIRGARLDGHITGATAAPSMEIEKTASDKTMEKIVNPAYQEWFA 81

Query: 400  QDQXXXXXXXXXXXENVLISTVGLTTAKDIWDGLQIEFATRNTAKVMQFRLQLQTMKKGN 579
             DQ            ++L      +TA   W  +   F  +  A+ +  RL L   +KGN
Sbjct: 82   SDQQVLGFLLSTLSRDILTQVATASTAAQAWQQVCAMFTAQTKARSLNVRLTLTNTQKGN 141

Query: 580  TPMKDYLNKIKS*CDILNSAGEEIPERVQILYILGGLGPEYDSVMVSITARAEPCSLREV 759
              + +Y  K+K+  D + S+G+ + E   + Y+L GL  +++ V+ +I AR E  ++ EV
Sbjct: 142  MSISEYCGKMKALADEIASSGKPLDEEDLVAYVLNGLDDDFEPVVSAIVARNESTTMVEV 201

Query: 760  HAILLSFENRLESYENHGNADNSQFYVNLTTQSQAHSYRRGGFNQATRGRGVTQNTRG-- 933
            ++ L +FENR    + H +A+             A +  RGGF    RGRG  + TRG  
Sbjct: 202  YSQLHNFENRQALRQAHASAN-------------AAARGRGGFQ---RGRGGGRGTRGRS 245

Query: 934  -----GRSQGRTGNYXXXXXXXXXXXXXXCQICHYNNHTADM*FYRTDLNFVPXXXXXXX 1098
                 GR +G  GN               CQ+C    H A   ++R D  +VP       
Sbjct: 246  NPAAPGRGRGTGGN-----QTRGGNDRPICQVCLKRGHVAAECWHRYDETYVPDERSAAA 300

Query: 1099 XXXXXXTQQTGNSLNPSVHVTNIGNSGNEIQQDMNWYPDSGATNHVTYDLGNLNIASEYQ 1278
                                            D NWY D+GAT+H+T +L  L++  +Y+
Sbjct: 301  AAAYGI--------------------------DTNWYLDTGATDHITNELDKLDVWEKYK 334

Query: 1279 GGDKVQLGNGSGLAISHLGSSTVKPSSCVNSHVFHLKNLLHVPHITKNLISVSQFAFDN 1455
            GGDK+   +G+G+ I H+G S +       +   HLKN+LHVP   KNLIS  + A DN
Sbjct: 335  GGDKIHTASGAGMEIKHIGDSVIH----TPTRELHLKNILHVPQAKKNLISAHRLAMDN 389


>emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]
          Length = 1424

 Score =  206 bits (525), Expect = 2e-54
 Identities = 135/421 (32%), Positives = 205/421 (48%), Gaps = 10/421 (2%)
 Frame = +1

Query: 226  KLGDNNYLIWKQQVWAAVNGYGLEGFLTGESTKPEKYTESTSGNKTRVINPAYVLWNRQD 405
            KL ++N+L+ ++Q+   + G+ L+ FL+  S  P ++  S    +  V NP +  W +Q 
Sbjct: 22   KLDNHNFLVXRKQILTTLRGHKLQHFLSETSVLPSEFLSSDDETQNHV-NPKFQDWEQQX 80

Query: 406  QXXXXXXXXXXXENVLISTVGLTTAKDIWDGLQIEFATRNTAKVMQFRLQLQTMKKGNTP 585
            Q           + +L   V   T+  +W  L++ FAT+  AKV QF+ QL   KKG+  
Sbjct: 81   QLIMSXLLASITDALLTRMVNCDTSAQVWKTLELYFATQVRAKVTQFKTQLHNTKKGDLS 140

Query: 586  MKDYLNKIKS*CDILNSAGEEIPERVQILYILGGLGPEYDSVMVSITARAEPCSLREVHA 765
            + DYL KI++  D+L   G +I  +  I  I  GL  +Y++ ++S+ +R +P ++ E+ A
Sbjct: 141  ISDYLLKIRNVVDLLALVGHKISVKDHIBAIFEGLPQDYETFIISVNSRLDPYTVEEIEA 200

Query: 766  ILLSFENRLESYENHGNADNSQFYVNLTTQSQAH-------SYRRGGFNQATRGRGVTQN 924
            +LL+ E+R+E      +         +TT            S R   F   T      Q+
Sbjct: 201  LLLAQESRIEKNIKIADFSTPSLAHLITTNRNGSPHFNYRASTRNSNFRPPTHSGNGMQH 260

Query: 925  TRGGRSQGRTGNYXXXXXXXXXXXXXXCQICHYNNHTADM*FYRTDLNFVPXXXXXXXXX 1104
             RG  +Q   G +              CQ+C    H     +YR D +F           
Sbjct: 261  FRGNFTQQGRGRH--GRGSWKGNNKPQCQLCGRIGHVVMQCYYRFDQSFTGPSQLQGNRP 318

Query: 1105 XXXXT---QQTGNSLNPSVHVTNIGNSGNEIQQDMNWYPDSGATNHVTYDLGNLNIASEY 1275
                    QQ      P     ++  +  EI QD NWYPDSGAT+H+T +L NL   S++
Sbjct: 319  QGNMAHLHQQLSEXFFPG--TPSVKPTTAEIIQDNNWYPDSGATHHLTPNLNNLLTKSQF 376

Query: 1276 QGGDKVQLGNGSGLAISHLGSSTVKPSSCVNSHVFHLKNLLHVPHITKNLISVSQFAFDN 1455
               D+V +GNG GL I H+G ++   SS + S    LK LLHVP ITKNL+SVS+FA DN
Sbjct: 377  PSSDEVFVGNGKGLPIHHIGHTSFS-SSFIPSKTLALKQLLHVPEITKNLLSVSKFAADN 435

Query: 1456 H 1458
            H
Sbjct: 436  H 436


>emb|CDH30699.1| putative Ty1-copia-like retrotransposon [Cercis chinensis]
          Length = 646

 Score =  201 bits (510), Expect = 6e-54
 Identities = 137/434 (31%), Positives = 205/434 (47%), Gaps = 18/434 (4%)
 Frame = +1

Query: 211  QLLTIKLGDNNYLIWKQQVWAAVNGYGLEGFLTGESTKPEKYTESTSGNKTR----VINP 378
            Q LTIKL  NN+LIW+ Q+   V   G E  L G  + P ++   T    T     ++NP
Sbjct: 43   QTLTIKLDRNNFLIWRNQLLNIVVANGYEDILEGTRSCPYQWIAVTDTASTTHGSVILNP 102

Query: 379  AYVLWNRQDQXXXXXXXXXXXENVLISTVGLTTAKDIWDGLQIEFATRNTAKVMQFRLQL 558
             YVLW RQ++           E ++   +   +A +IW  L+  +A+ + A++M+ RLQL
Sbjct: 103  EYVLWQRQNRLVMSWIYSSLTEQMMTQIMAYNSACEIWTALRESYASASRARIMELRLQL 162

Query: 559  QTMKKGNTPMKDYLNKIKS*CDILNSAGEEIPERVQILYILGGLGPEYDSVMVSITARAE 738
            QT +KG   + DY+ +I+  CD L + GE +    Q++ +L GLG EY+ ++ SIT+R +
Sbjct: 163  QTTRKGGLSVMDYMLRIQHICDHLRAIGESVSIDDQVMAVLAGLGSEYNPIVASITSRLD 222

Query: 739  PCSLREVHAILLSFENRLE---SYENH-----------GNADNSQFYVNLTTQSQAHSYR 876
              S++ + + L ++E RLE   S E H            N    + Y      SQ     
Sbjct: 223  SISVQALQSYLETYEKRLEIQNSVEQHIPLQANAAMYNSNRGKRKPYQQNFHHSQTPVTA 282

Query: 877  RGGFNQATRGRGVTQNTRGGRSQGRTGNYXXXXXXXXXXXXXXCQICHYNNHTADM*FYR 1056
               FN     +G     RGG S     N               CQIC    H A   ++R
Sbjct: 283  THNFNHRNSSQG---GFRGGHSNKGRAN---------PGSRPQCQICCKIGHVATECWHR 330

Query: 1057 TDLNFVPXXXXXXXXXXXXXTQQTGNSLNPSVHVTNIGNSGNEIQQDMNWYPDSGATNHV 1236
             D  F P              Q + ++ +P   +   G  G     +  W+ D+GAT+HV
Sbjct: 331  FDNQFQP--------KASHSNQFSSSAQDPQALMAAPGLLG-----ETPWFLDTGATHHV 377

Query: 1237 TYDLGNLNIASEYQGGDKVQLGNGSGLAISHLGSSTVKPSSCVNSHVFHLKNLLHVPHIT 1416
            T DL NL++ + + G DKV +GNG GL + H G S++  S         LKN+LHVP I 
Sbjct: 378  TSDLANLSLHNPFSGDDKVIVGNGKGLYVLHTGHSSIPTS----QGALLLKNVLHVPKIA 433

Query: 1417 KNLISVSQFAFDNH 1458
             NL+SV +   DN+
Sbjct: 434  ANLVSVQKLCHDNN 447


>ref|XP_010241784.1| PREDICTED: uncharacterized protein LOC104586305 [Nelumbo nucifera]
          Length = 426

 Score =  195 bits (496), Expect = 8e-54
 Identities = 134/418 (32%), Positives = 199/418 (47%), Gaps = 2/418 (0%)
 Frame = +1

Query: 208  SQLLTIKLGDNNYLIWKQQVWAAVNGYGLEGFLTGE-STKPEKYTESTSGNKTRVINPAY 384
            S L+ +KL  +N+L+W+ Q    + G  L G+L G     P   T    G  T  IN  Y
Sbjct: 23   SNLILVKLDKHNFLLWRAQYQQLLEGLHLFGYLDGSVPCPPMNVTTKKDGVVTSSINLDY 82

Query: 385  VLWNRQDQXXXXXXXXXXXENVLISTVGLTTAKDIWDGLQIEFATRNTAKVMQFRLQLQT 564
            + W  QD+           E  L + VG +T+ + W  L   +A+ + A++MQ +  L  
Sbjct: 83   LNWRTQDKPLLSWLLTALKEEALATVVGCSTSHEAWSTLCRVYASPSRARLMQIKHDLHH 142

Query: 565  MKKGNTPMKDYLNKIKS*CDILNSAGEEIPERVQILYILGGLGPEYDSVMVSITARAEPC 744
            + KG+  M D  +K+KS  D L + G  +     ILY +GGL  EYDS++ +IT + +  
Sbjct: 143  LNKGSKSMTDNFHKVKSLSDSLATVGHPLHIDDIILYTIGGLSSEYDSLVTAITTKTDEI 202

Query: 745  SLREVHAILLSFENRLESYENHGNADNSQFYVNLTTQSQAHSYRRGGFNQATRGRGVTQN 924
            S+ E+H ILL    RLE   +           ++T Q+    ++    +Q  + R  + N
Sbjct: 203  SIDELHGILLQHGLRLERQSSCS---------DITPQANTAMHK----SQQPQDRPFS-N 248

Query: 925  TRG-GRSQGRTGNYXXXXXXXXXXXXXXCQICHYNNHTADM*FYRTDLNFVPXXXXXXXX 1101
            TRG GR +GR  +               CQ+C    H+A   F+R DL F          
Sbjct: 249  TRGRGRGRGRDRS-PNALGFGSSSPKVTCQVCGKIGHSALSCFHRFDLAF---------- 297

Query: 1102 XXXXXTQQTGNSLNPSVHVTNIGNSGNEIQQDMNWYPDSGATNHVTYDLGNLNIASEYQG 1281
                    T +    + H  +          D +WYPD G T+H+T DL NL+I + Y G
Sbjct: 298  --QASNSPTNSKALSATHTID--------TTDNDWYPDMGGTHHLTSDLSNLSIHNPYHG 347

Query: 1282 GDKVQLGNGSGLAISHLGSSTVKPSSCVNSHVFHLKNLLHVPHITKNLISVSQFAFDN 1455
             DK+ +GN + L I H+G++ +    C     FHLKN+LHVP ITKNL+ V QF  DN
Sbjct: 348  NDKIAVGNDTSLDIYHIGNTVLHTPIC----SFHLKNILHVPAITKNLLFVRQFCHDN 401


>ref|XP_015696936.1| PREDICTED: uncharacterized protein LOC107305040 [Oryza brachyantha]
          Length = 540

 Score =  198 bits (503), Expect = 9e-54
 Identities = 135/429 (31%), Positives = 200/429 (46%), Gaps = 7/429 (1%)
 Frame = +1

Query: 190  TVIQP-QSQLLTIKLGDNNYLIWKQQVWAAVNGYGLEGFLTGESTKPEKYTESTSGNKTR 366
            T I P Q Q ++ KLG  N+ +WK Q+ AAV G  L+G+LTG +  P+   E T   K  
Sbjct: 10   TTINPLQGQTVSEKLGKANHALWKAQISAAVRGAQLQGYLTGVAKAPDAQIEVTKDEKKF 69

Query: 367  VI-NPAYVLWNRQDQXXXXXXXXXXXENVLISTVGLTTAKDIWDGLQIEFATRNTAKVMQ 543
            +  NPA+  W   DQ           + VLI      TA + W  ++  ++TR  A+ + 
Sbjct: 70   MQPNPAFEYWEANDQQFLGYLLPSLSKEVLIQVATCKTAAEAWRAIEEIYSTRTRARSVN 129

Query: 544  FRLQLQTMKKGNTPMKDYLNKIKS*CDILNSAGEEIPERVQILYILGGLGPEYDSVMVSI 723
             RL L   KKG   + +Y+ K+++  D + + G  + E   +  I+ GL  ++  ++ ++
Sbjct: 130  TRLALTNTKKGTMKIAEYVAKMRALGDEMAAGGSPLDEEDLVQNIIAGLDEDFSPIISAL 189

Query: 724  TARAEPCSLREVHAILLSFENRLESYENHGNADNSQFYVNLTTQSQAHSYRRGGFNQATR 903
              + EP ++ E+H+ LL++E  L+ Y N     NSQ    L T        +GG  +  +
Sbjct: 190  CTKTEPITIGELHSQLLNYETLLDLYRN-----NSQGGSVLATHR-----GKGGGGRGGQ 239

Query: 904  GRGVTQNTRGGRSQGR---TGNY--XXXXXXXXXXXXXXCQICHYNNHTADM*FYRTDLN 1068
              G T NT GGR  G     GN                 CQ+C    H A   +YR D +
Sbjct: 240  FLGNTSNTLGGRGGGAPRGRGNAQGRGRGGRTGPDRRPTCQVCFKRGHIASDCWYRFDED 299

Query: 1069 FVPXXXXXXXXXXXXXTQQTGNSLNPSVHVTNIGNSGNEIQQDMNWYPDSGATNHVTYDL 1248
            +V                   NS  PS    N   S N    D NWY D+GAT+H+T +L
Sbjct: 300  YV-------ADEKLVAAATASNSFGPS----NFYGSTNSYGIDQNWYIDTGATDHITGEL 348

Query: 1249 GNLNIASEYQGGDKVQLGNGSGLAISHLGSSTVKPSSCVNSHVFHLKNLLHVPHITKNLI 1428
              L    +Y GGD++   +G+ + ISH+G +TV       +   HL N+L VP   KNLI
Sbjct: 349  EKLTTKEKYTGGDQIHTASGASMGISHIGHATVH----TPNRTIHLNNVLDVPQAKKNLI 404

Query: 1429 SVSQFAFDN 1455
            S SQ   DN
Sbjct: 405  SASQLVADN 413


>ref|XP_010656394.1| PREDICTED: uncharacterized protein LOC104880653 [Vitis vinifera]
          Length = 415

 Score =  192 bits (487), Expect = 1e-52
 Identities = 132/396 (33%), Positives = 191/396 (48%), Gaps = 33/396 (8%)
 Frame = +1

Query: 193  VIQPQSQLLTIKLGDNNYLIWKQQVWAAVNGYGLEGFLTGESTKPEKYTESTSGNKTRVI 372
            VI P SQL+T++L D+N+L+WK Q+   V GYGLEGFL G    P K      G    V 
Sbjct: 35   VISPLSQLITMRLEDDNFLMWKYQIENVVRGYGLEGFLFGTEQVPPKMVTDKIG--VLVP 92

Query: 373  NPAYVLWNRQDQXXXXXXXXXXXENVLISTVGLTTAKDIWDGLQIEFATRNTAKVMQFRL 552
            NP +  + RQD               L   VG ++A ++W+ +   F ++++AKVM ++ 
Sbjct: 93   NPKFRDYQRQDHLLISWLLSSIGSAFLPQVVGCSSAFEVWNTISQNFNSQSSAKVMFYKS 152

Query: 553  QLQTMKKGNTPMKDYLNKIKS*CDILNSAGEEIPERVQILYILGGLGPEYDSVMVSITAR 732
            Q+Q +KK    M+DYL K+K+ CD+L +AG +I +   IL I+ GLG EY+SV+  I+++
Sbjct: 153  QMQMLKKDGLTMRDYLTKMKNYCDLLATAGHKISDTDHILAIMQGLGDEYESVIAVISSK 212

Query: 733  AEPCSLREVHAILLSFENRL--------------ESYENHGNADNSQFYVNLTTQSQAHS 870
                SL+ V + L++ E R+                Y N G   +S +  N    S   +
Sbjct: 213  KSSPSLQYVTSTLIAHEGRIAHKISSNDLSMNYTSQYSNRG--PSSSWNSNGYPSSGFQN 270

Query: 871  YRRGGFNQATRGRGVTQNTRG-GRSQGRTGNYXXXXXXXXXXXXXXCQICHYNNHTADM* 1047
              + G NQ TRG  V    RG GR+QG                   CQ+C+   HT    
Sbjct: 271  RNQFGGNQVTRGSFVHNRGRGRGRAQG--------------GIKPQCQLCNKFGHTVHRC 316

Query: 1048 FYRTDLNF---VPXXXXXXXXXXXXXTQQTGNSLNP--SVHVTNIGNSGNEIQQDMN--- 1203
            FYR D NF   +P                   S++   +V++T      N+   +M    
Sbjct: 317  FYRYDPNFHGNMPANGPTPGVLGSGARNGASGSISSAGNVNLTEYDAQENQDYSEMEAMV 376

Query: 1204 ----------WYPDSGATNHVTYDLGNLNIASEYQG 1281
                      W+PDSGATNHVT+DLGNLN  +EY G
Sbjct: 377  ATPEDLQNCCWFPDSGATNHVTHDLGNLNSGAEYNG 412


>gb|KYP75940.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1403

 Score =  201 bits (510), Expect = 2e-52
 Identities = 140/438 (31%), Positives = 214/438 (48%), Gaps = 18/438 (4%)
 Frame = +1

Query: 199  QPQSQLLTIKLGDNNYLIWKQQVWAAVNGYGLEGFLTGESTKPEKYTESTSGNKTR-VIN 375
            Q  S  ++ KL ++N+L W+QQ  + + GY L+  + G    P ++   T  +K + V++
Sbjct: 14   QAFSNPISSKLSEDNFLTWRQQAESTIRGYRLKKHILGAMHVPAQH--KTDEDKAKGVLS 71

Query: 376  PAYVLWNRQDQXXXXXXXXXXXENVLISTVGLTTAKDIWDGLQIEFATRNTAKVMQFRLQ 555
            P Y  +++QD                +  VG      IW+ L+I FA++  A+V Q ++Q
Sbjct: 72   PEYEDYDQQDNLLKSWLLESMEPQFKVRMVGYEWCHQIWNNLEIYFASQTKARVKQLKIQ 131

Query: 556  LQTMKKGNTPMKDYLNKIKS*CDILNSAGEEIPERVQILYILGGLGPEYDSVMVSITARA 735
            L+ +KK  T +  YL +IK   + L + G  +     I  I  GL  EYD  + S+  R 
Sbjct: 132  LRGIKK-TTAINQYLLEIKKIVNNLAAIGSPLNTAEHIDAIFDGLSEEYDPFITSVLTRT 190

Query: 736  EPCSLREVHAILLSFENRLESYENHGNADNSQFYVNLT-----TQSQAHSYRRGGFNQAT 900
            E  S+ ++ ++L++ E RLE    H  +++     NL      ++ Q  +  RG  N  T
Sbjct: 191  EEYSVEQIESLLMAQEERLEK---HKASESVPLQANLAQGSFNSRKQFTNQGRGSNNNGT 247

Query: 901  RGRGVTQNTRGGRSQGRTGNYXXXXXXXXXXXXXXCQICHYNNHTADM*FYRTDLNFVPX 1080
             GRG  +    GR +GR+  +              CQ+C    H A   ++R D      
Sbjct: 248  HGRGPHR----GRGRGRSAQHFGRGNKQP------CQVCGKIGHIAFHCWHRYD------ 291

Query: 1081 XXXXXXXXXXXXTQQTGNSLNPSVHVTNIGNSGNEIQQ------------DMNWYPDSGA 1224
                         Q T  +LN   H TN+ N GN+ Q             D  WYPDSGA
Sbjct: 292  ------------QQYTEPNLN---HNTNVYNPGNQQQMQAMIAGSQNMVYDDQWYPDSGA 336

Query: 1225 TNHVTYDLGNLNIASEYQGGDKVQLGNGSGLAISHLGSSTVKPSSCVNSHVFHLKNLLHV 1404
            TNH+T DL NL   ++Y G DK+ +GNG  + I+H G+S     + ++S +F LK LLHV
Sbjct: 337  TNHLTSDLNNLGSKTDYTGQDKIHMGNGQAIGINHTGTSFF--HTPMSSKIFTLKELLHV 394

Query: 1405 PHITKNLISVSQFAFDNH 1458
            PHITKNL+SVS+F  DN+
Sbjct: 395  PHITKNLLSVSKFCKDNN 412


>emb|CAH67640.1| H0102C09.1 [Oryza sativa Indica Group]
          Length = 1825

 Score =  200 bits (509), Expect = 3e-52
 Identities = 127/414 (30%), Positives = 194/414 (46%), Gaps = 1/414 (0%)
 Frame = +1

Query: 217  LTIKLGDNNYLIWKQQVWAAVNGYGLEGFLTGES-TKPEKYTESTSGNKTRVINPAYVLW 393
            +T KL   N+ +W  QV  A+ G  LEG + G++   P + T++  G + +  NP Y  W
Sbjct: 156  VTEKLSKANHGLWVAQVLTAIRGARLEGHINGKNPAPPAEITKTVDGKEVKTSNPNYDEW 215

Query: 394  NRQDQXXXXXXXXXXXENVLISTVGLTTAKDIWDGLQIEFATRNTAKVMQFRLQLQTMKK 573
               DQ              L+    + TA + W  L   F +R  A+ +  RL L T++K
Sbjct: 216  FAADQQILGFLFSSLTRETLLQVAAVKTAAEAWKTLDDMFTSRTRARSLNVRLALTTLQK 275

Query: 574  GNTPMKDYLNKIKS*CDILNSAGEEIPERVQILYILGGLGPEYDSVMVSITARAEPCSLR 753
            GN+ + +Y+ K+K+  D + +AG+ + +   I YIL GL  ++DSV+ +I  R EP ++ 
Sbjct: 276  GNSSISEYIGKMKTLADEVAAAGKPLDDEELIAYILNGLDEDFDSVVSTIVGRVEPVTVA 335

Query: 754  EVHAILLSFENRLESYENHGNADNSQFYVNLTTQSQAHSYRRGGFNQATRGRGVTQNTRG 933
            EV++ LLSFENRL   +    A+ +          +     RGG     RGRG T+    
Sbjct: 336  EVYSQLLSFENRLAMRQAQATANMA------NRGGRGGGGSRGGGANPGRGRGATRGRGA 389

Query: 934  GRSQGRTGNYXXXXXXXXXXXXXXCQICHYNNHTADM*FYRTDLNFVPXXXXXXXXXXXX 1113
               +GR  N               CQ+C+   H A   ++R D +FVP            
Sbjct: 390  APGRGRGNN----QQQRSYDNRPLCQVCYKRGHVAADCWHRFDEDFVP------------ 433

Query: 1114 XTQQTGNSLNPSVHVTNIGNSGNEIQQDMNWYPDSGATNHVTYDLGNLNIASEYQGGDKV 1293
                    +  ++H            +D NWY D+GAT+H+T +L  L     Y+G D++
Sbjct: 434  ----DDKLVAAAIHTH---------ARDSNWYVDTGATDHITSELEKLTARDVYKGHDQI 480

Query: 1294 QLGNGSGLAISHLGSSTVKPSSCVNSHVFHLKNLLHVPHITKNLISVSQFAFDN 1455
               +GSG+ I H+G S V       +   HL N+LHVP   KNLIS  + A DN
Sbjct: 481  HTASGSGMEIKHIGHSIVH----TPTRPLHLNNVLHVPQANKNLISAHKLAADN 530


>gb|ABF95616.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1241

 Score =  197 bits (502), Expect = 2e-51
 Identities = 123/412 (29%), Positives = 190/412 (46%), Gaps = 2/412 (0%)
 Frame = +1

Query: 226  KLGDNNYLIWKQQVWAAVNGYGLEGFLTGESTKPEKYTESTSGNKT--RVINPAYVLWNR 399
            KL   NY +W  QV AA+ G  L+G +TG +  P    E T+ +KT  +++NPAY  W  
Sbjct: 22   KLTKGNYALWSAQVLAAIRGARLDGHITGATAAPSMEIEKTASDKTTEKIVNPAYQEWFA 81

Query: 400  QDQXXXXXXXXXXXENVLISTVGLTTAKDIWDGLQIEFATRNTAKVMQFRLQLQTMKKGN 579
             DQ            ++L      +TA   W  +   F  +  A+ +  RL L   +KGN
Sbjct: 82   SDQQVLGFLLSTLSRDILTQVATASTAAQAWQQVCAMFTAQTKARSLNVRLTLTNTQKGN 141

Query: 580  TPMKDYLNKIKS*CDILNSAGEEIPERVQILYILGGLGPEYDSVMVSITARAEPCSLREV 759
              + +Y  K+K+  + + S+G+ + E   + Y+L GL  +++ V+ +I AR E  ++ EV
Sbjct: 142  MSISEYCGKMKALANEIASSGKPLDEEDLVAYVLNGLDDDFEPVVSAIVARNESTTMAEV 201

Query: 760  HAILLSFENRLESYENHGNADNSQFYVNLTTQSQAHSYRRGGFNQATRGRGVTQNTRGGR 939
            ++ LL+FENR    + H +       VN   + +    R  G  + TRGR  +     GR
Sbjct: 202  YSQLLNFENRQALRQAHAS-------VNAAARCRGVFQRGRGGGRGTRGR--SNPAAPGR 252

Query: 940  SQGRTGNYXXXXXXXXXXXXXXCQICHYNNHTADM*FYRTDLNFVPXXXXXXXXXXXXXT 1119
             +G  GN               CQ+C    H A   ++R D  +VP              
Sbjct: 253  GRGTGGN-----QTRGGNDRPICQVCLKRGHVAAECWHRYDETYVPDERSAAAAAAYGI- 306

Query: 1120 QQTGNSLNPSVHVTNIGNSGNEIQQDMNWYPDSGATNHVTYDLGNLNIASEYQGGDKVQL 1299
                                     D NWY D+GAT+H+T +L  L++  +Y+GGDK+  
Sbjct: 307  -------------------------DTNWYLDTGATDHITNELDKLDVREKYKGGDKIHT 341

Query: 1300 GNGSGLAISHLGSSTVKPSSCVNSHVFHLKNLLHVPHITKNLISVSQFAFDN 1455
             +G+G+ I H+G S +       +   HLKN+LHVP   KNLIS  + A DN
Sbjct: 342  ASGAGMEIKHIGDSVIH----TPTRELHLKNILHVPQAKKNLISAHRLAMDN 389


>ref|XP_012840817.1| PREDICTED: uncharacterized protein LOC105961120 [Erythranthe guttata]
          Length = 389

 Score =  187 bits (476), Expect = 3e-51
 Identities = 123/385 (31%), Positives = 193/385 (50%), Gaps = 1/385 (0%)
 Frame = +1

Query: 208  SQLLTIKLGDNNYLIWKQQVWAAVNGYGLEGFLTGESTKPEKYTESTSGNKTRVINPAYV 387
            S L++IKL D+NYL+W+ Q+   + G+ L  F+ G    P      ++ N      P Y 
Sbjct: 29   SSLVSIKLSDDNYLLWRAQLLPYLKGHNLFRFVDGTIHPPPILDPDSNPN------PDYS 82

Query: 388  LWNRQDQXXXXXXXXXXXENVLISTVGLTTAKDIWDGLQIEFATRNTAKVMQFRLQLQTM 567
            +W +QDQ           E+V+   +  TT++++W  L+  FA  + A +MQ   QL T+
Sbjct: 83   IWLQQDQSVMSILISSLSESVIAHILDATTSREVWTILETLFAASSQANIMQTLFQLSTL 142

Query: 568  KKGNTPMKDYLNKIKS*CDILNSAGEEIPERVQILYILGGLGPEYDSVMVSITARAEPCS 747
            KKG+  +  Y  + K   D L  AG+ I     ++++L GLG +YDS++ SIT RA+  S
Sbjct: 143  KKGSDSISVYYRRAKLLMDSLAMAGKVISPSEFVVFLLAGLGQDYDSIVTSITTRADSLS 202

Query: 748  LREVHAILLSFENRLESYENHGNADNSQFYVNLTTQSQAHSYRRGGFNQATRGRGVTQNT 927
              +V+A LL+ E+R+ S++      N++F  N + +      R  GF+   RGR  T   
Sbjct: 203  PAQVYAHLLNHESRI-SHQIRNLTANTEFSANNSIRQSPQFQRGRGFH---RGRH-TPRG 257

Query: 928  RGGRSQGRTGNYXXXXXXXXXXXXXXCQICHYNNHTADM*FYRTDLNFVPXXXXXXXXXX 1107
            RGGR++G   N+              CQ+C    H+A   ++R D N+ P          
Sbjct: 258  RGGRNRGGRSNF--ITPAQFTSDRPTCQVCLKPGHSAATCYHRYDFNYQPPPPPAL---- 311

Query: 1108 XXXTQQTGNSLNPSVHVTNIGNSGNEIQQDMNWYPDSGATNHVTYDLGNLNI-ASEYQGG 1284
                         S H T           D +W+PD+ A++H T D  NL+I  SEY+G 
Sbjct: 312  -------------SAHYT-------AAAADPSWFPDTAASHHFTNDFSNLSINPSEYKGS 351

Query: 1285 DKVQLGNGSGLAISHLGSSTVKPSS 1359
            D+V++G+GSGL I H+GSS +  S+
Sbjct: 352  DQVRIGDGSGLPIHHVGSSNISSST 376


>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108708884|gb|ABF96679.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1437

 Score =  196 bits (498), Expect = 9e-51
 Identities = 129/417 (30%), Positives = 196/417 (47%), Gaps = 2/417 (0%)
 Frame = +1

Query: 211  QLLTIKLGDNNYLIWKQQVWAAVNGYGLEGFLTGESTKPEKYTESTSGNKTRVI-NPAYV 387
            Q ++ KLG +N+ +WK Q+ A + G  LEG LTG+   P        G K  V+ NP Y 
Sbjct: 16   QPVSEKLGKSNHAVWKAQILATIRGARLEGHLTGDDQPPAPILRRKEGEKEVVVSNPEYE 75

Query: 388  LWNRQDQXXXXXXXXXXXENVLISTVGLTTAKDIWDGLQIEFATRNTAKVMQFRLQLQTM 567
             W   DQ           +++L+      TA   W  +Q  F +   A+ +  RL L T+
Sbjct: 76   EWVATDQQVLAYLLSSMTKDLLVQVATCRTAASAWSMIQGMFGSMTRARTINTRLSLSTL 135

Query: 568  KKGNTPMKDYLNKIKS*CDILNSAGEEIPERVQILYILGGLGPEYDSVMVSITARAEPCS 747
            +KG+  +  Y+ K+++  D L + G+ + +   I YI  GL  E++ V+ +I  R +P +
Sbjct: 136  QKGDMNITTYVGKMRALADDLMAVGKPVDDDELIGYIFAGLDDEFEPVISTIVGRPDPVT 195

Query: 748  LREVHAILLSFENRLESYENHGNADNSQFYVNLTTQSQAHSYRRGGFNQATRGRGVTQN- 924
            + E +A L+SFE RL ++   G+  +         Q Q    R GG   + RGRG   N 
Sbjct: 196  IGETYAQLISFEQRL-AHRRSGDQSSVNSASRSRGQPQRGGSRSGG--DSNRGRGAPSNG 252

Query: 925  TRGGRSQGRTGNYXXXXXXXXXXXXXXCQICHYNNHTADM*FYRTDLNFVPXXXXXXXXX 1104
               GR +G                   CQ+C+   HT    +YR D NFVP         
Sbjct: 253  ANRGRGRGNPSG-GRANVGGGTDNRPKCQLCYKRGHTVCDCWYRYDENFVP--------- 302

Query: 1105 XXXXTQQTGNSLNPSVHVTNIGNSGNEIQQDMNWYPDSGATNHVTYDLGNLNIASEYQGG 1284
                 +  G +++  V              D NWY D+GAT+HVT +L  L +  +Y G 
Sbjct: 303  ---DERFAGTAVSYGV--------------DTNWYLDTGATDHVTGELDKLTVRDKYHGN 345

Query: 1285 DKVQLGNGSGLAISHLGSSTVKPSSCVNSHVFHLKNLLHVPHITKNLISVSQFAFDN 1455
            D+V   +G+G+ ISH+G+S VK      S   HLK++L+VP   KNL+S  +   DN
Sbjct: 346  DQVHTASGAGMEISHIGNSVVK----TPSRNLHLKDVLYVPKANKNLVSAYKLTSDN 398


>ref|XP_008653324.1| PREDICTED: uncharacterized protein LOC103633398 [Zea mays]
            gi|223975697|gb|ACN32036.1| unknown [Zea mays]
          Length = 376

 Score =  186 bits (471), Expect = 1e-50
 Identities = 127/386 (32%), Positives = 183/386 (47%), Gaps = 7/386 (1%)
 Frame = +1

Query: 208  SQLLTIKLGDNNYLIWKQQVWAAVNGYGLEGFLTGESTKPEKYTE----STSGNKTRVIN 375
            SQ++++KL   NYL+W  QV   +   GL G + G    P +         SG +T  IN
Sbjct: 23   SQMVSMKLNHENYLLWVAQVLPYLRSQGLSGHIDGSLPAPRQTVAVDPAEGSGGRTIAIN 82

Query: 376  PAYVLWNRQDQXXXXXXXXXXXENVLISTVGLTTAKDIWDGLQIEFATRNTAKVMQFRLQ 555
            P +  W  QDQ           E VL + V  TTA+  W  L+  +A+ + A++MQ R+Q
Sbjct: 83   PEFTSWYHQDQLVLSVINSSLSEEVLATVVDATTARGAWSTLERMYASSSRARIMQIRMQ 142

Query: 556  LQTMKKGNTPMKDYLNKIKS*CDILNSAGEEIPERVQILYILGGLGPEYDSVMVSITARA 735
            L T++KG+    +Y  K+K   D L + G+ + +   I Y+L GL  +YDS++ SIT R 
Sbjct: 143  LATIQKGDLTAAEYFRKVKRLADTLAAVGKRLEDEEFISYLLRGLPADYDSLVTSITTRP 202

Query: 736  EPCSLREVHAILLSFENRLESYENHGNADNSQFYVNLTTQSQAHSYRRGGFNQATR-GRG 912
            +  ++ +V+A LLSFE R E +   G         ++   ++  S   G F Q  R GRG
Sbjct: 203  DTYTISDVYAHLLSFETRQEYHTAVGQIS------SVNNANRVPSRGGGAFGQNGRGGRG 256

Query: 913  VTQNTRGGRSQGRTGNY--XXXXXXXXXXXXXXCQICHYNNHTADM*FYRTDLNFVPXXX 1086
                 RGGRSQ   GN                 CQIC   NH A   ++R D  +     
Sbjct: 257  -----RGGRSQPGRGNNRPPARPPSNNSSSSGTCQICGKGNHNALQCWHRFDQAY----- 306

Query: 1087 XXXXXXXXXXTQQTGNSLNPSVHVTNIGNSGNEIQQDMNWYPDSGATNHVTYDLGNLNIA 1266
                        Q  +++  +   T      +E   D NWY DSGAT+H+T DL  L   
Sbjct: 307  ------------QAESTVKQAAAAT------HEYAVDPNWYMDSGATDHITSDLERLTTR 348

Query: 1267 SEYQGGDKVQLGNGSGLAISHLGSST 1344
              Y GGDK+Q+ NG+G   SH  SS+
Sbjct: 349  ERYTGGDKIQVANGAG--SSHEASSS 372


>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
            gi|531389|gb|AAA57005.1| copia-like retrotransposon
            Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score =  195 bits (495), Expect = 2e-50
 Identities = 124/411 (30%), Positives = 201/411 (48%), Gaps = 1/411 (0%)
 Frame = +1

Query: 226  KLGDNNYLIWKQQVWAAVNGYGLEGFLTGESTKPEKYTESTSGNKTRVINPAYVLWNRQD 405
            KL   NYL+WK QV  A+    L+  LTG    P K     S     V NPAY  W  +D
Sbjct: 23   KLTKGNYLLWKAQVLPAIRAAQLDDILTGVEICPPKTISDASDRTVTVANPAYGRWIARD 82

Query: 406  QXXXXXXXXXXXENVLISTVGLTTAKDIWDGLQIEFATRNTAKVMQFRLQLQTMKKGNTP 585
            Q             VL S V  +T+  +W  L   +++ + A+ +  R+ L T KKG + 
Sbjct: 83   QAVLGYLLSSLSREVLSSVVNCSTSASVWTTLSEMYSSHSRARKVNTRIALATTKKGASS 142

Query: 586  MKDYLNKIKS*CDILNSAGEEIPERVQILYILGGLGPEYDSVMVSITARAEPCSLREVHA 765
            + +Y  K++   D L +AG+ + +   + ++L GL  +++ ++ ++ AR++P +  +++ 
Sbjct: 143  VAEYFAKMRGFADELGAAGKPLDDEEFVSFLLTGLDEDFNPLVTAVVARSDPITPGDLYT 202

Query: 766  ILLSFENRLESYENHGNADNSQFYVNLTTQSQAHSYRRGGFNQATRGRGVTQN-TRGGRS 942
             LLS+ENR+  +   G++   Q   N  +  +  S+ R G    +RGRG  +  +RGG  
Sbjct: 203  QLLSYENRM--HLQTGSSSLMQSSANARSPGRGMSWGRSGGRGFSRGRGRGRGPSRGGFQ 260

Query: 943  QGRTGNYXXXXXXXXXXXXXXCQICHYNNHTADM*FYRTDLNFVPXXXXXXXXXXXXXTQ 1122
                GN               CQ+C    HTA   +YR D N+VP              Q
Sbjct: 261  SFGRGNNYSGATDADTSSRPRCQVCSRVGHTALNCWYRFDENYVP-------------DQ 307

Query: 1123 QTGNSLNPSVHVTNIGNSGNEIQQDMNWYPDSGATNHVTYDLGNLNIASEYQGGDKVQLG 1302
            ++ NS            + ++   ++ WY D+GAT+H+T DL  L +  +Y G D++   
Sbjct: 308  RSANS------------AAHQNGSNVPWYTDTGATDHITGDLDRLTMHDKYTGTDQIIAA 355

Query: 1303 NGSGLAISHLGSSTVKPSSCVNSHVFHLKNLLHVPHITKNLISVSQFAFDN 1455
            NG+G+ IS++G++ V  S    S   HL+++LHVP   KNLISV +   DN
Sbjct: 356  NGTGMTISNIGNAIVPTS----SRSLHLRSVLHVPSTHKNLISVHRLTNDN 402


>gb|ACL54615.1| unknown [Zea mays]
          Length = 376

 Score =  184 bits (467), Expect = 4e-50
 Identities = 126/386 (32%), Positives = 182/386 (47%), Gaps = 7/386 (1%)
 Frame = +1

Query: 208  SQLLTIKLGDNNYLIWKQQVWAAVNGYGLEGFLTGESTKPEKYTE----STSGNKTRVIN 375
            SQ++++KL   NYL+W  QV   +   GL G + G    P +         SG +T  IN
Sbjct: 23   SQMVSMKLNHENYLLWVAQVLPYLRSQGLSGHIDGSLPAPRQTVAVDPAEGSGGRTIAIN 82

Query: 376  PAYVLWNRQDQXXXXXXXXXXXENVLISTVGLTTAKDIWDGLQIEFATRNTAKVMQFRLQ 555
            P +  W  QDQ           E VL + V  TTA+  W  L+  +A+ +  ++MQ R+Q
Sbjct: 83   PEFTSWYHQDQLVLSVINSSLSEEVLATVVDATTARGAWSTLERMYASSSRVRIMQIRMQ 142

Query: 556  LQTMKKGNTPMKDYLNKIKS*CDILNSAGEEIPERVQILYILGGLGPEYDSVMVSITARA 735
            L T++KG+    +Y  K+K   D L + G+ + +   I Y+L GL  +YDS++ SIT R 
Sbjct: 143  LATIQKGDLTAAEYFRKVKRLADTLAAVGKRLEDEEFISYLLRGLPADYDSLVTSITTRP 202

Query: 736  EPCSLREVHAILLSFENRLESYENHGNADNSQFYVNLTTQSQAHSYRRGGFNQATR-GRG 912
            +  ++ +V+A LLSFE R E +   G         ++   ++  S   G F Q  R GRG
Sbjct: 203  DTYTISDVYAHLLSFETRQEYHTAVGQIS------SVNNANRVPSRGGGAFGQNGRGGRG 256

Query: 913  VTQNTRGGRSQGRTGNY--XXXXXXXXXXXXXXCQICHYNNHTADM*FYRTDLNFVPXXX 1086
                 RGGRSQ   GN                 CQIC   NH A   ++R D  +     
Sbjct: 257  -----RGGRSQPGRGNNRPPARPPSNNSSSSGTCQICGKGNHNALQCWHRFDQAY----- 306

Query: 1087 XXXXXXXXXXTQQTGNSLNPSVHVTNIGNSGNEIQQDMNWYPDSGATNHVTYDLGNLNIA 1266
                        Q  +++  +   T      +E   D NWY DSGAT+H+T DL  L   
Sbjct: 307  ------------QAESTVKQAAAAT------HEYAVDPNWYMDSGATDHITSDLERLTTR 348

Query: 1267 SEYQGGDKVQLGNGSGLAISHLGSST 1344
              Y GGDK+Q+ NG+G   SH  SS+
Sbjct: 349  ERYTGGDKIQVANGAG--SSHEASSS 372


>gb|AAK09230.1|AC084320_17 putative copia-like retrotransposon Hopscotch polyprotein [Oryza
            sativa Japonica Group]
            gi|14718304|gb|AAK72882.1|AC091123_1 putative gag-pol
            protein [Oryza sativa Japonica Group]
          Length = 1219

 Score =  192 bits (488), Expect = 2e-49
 Identities = 130/418 (31%), Positives = 188/418 (44%), Gaps = 7/418 (1%)
 Frame = +1

Query: 226  KLGDNNYLIWKQQVWAAVNGYGLEGFLTGESTKPEKYTESTSGNK----TRVINPAYVLW 393
            KL   N+ +W  QV  A+ G  LEG + G S  PE   E   G K     RV NPAY  W
Sbjct: 22   KLTKQNHSLWSAQVLTALRGARLEGHVLGTSVPPEAELEQKEGEKGEKTVRVPNPAYGEW 81

Query: 394  NRQDQXXXXXXXXXXXENVLISTVGLTTAKDIWDGLQIEFATRNTAKVMQFRLQLQTMKK 573
               DQ             +     G  TA   W  ++  F+TR+ A  +  RL L T +K
Sbjct: 82   FATDQQVLGFLFSSLTREIRSQVAGAPTAAAAWKTIENTFSTRSHAGAINVRLALTTTQK 141

Query: 574  GNTPMKDYLNKIKS*CDILNSAGEEIPERVQILYILGGLGPEYDSVMVSITARAEPCSLR 753
            G + + +Y++K+++  D + + G+ I +   + YI+ GL  E+D V+ ++ A+    ++ 
Sbjct: 142  GQSTVTEYVSKMRALGDEIAATGKPIDDEELVAYIINGLDSEFDPVVEALIAKNASVTVA 201

Query: 754  EVHAILLSFENRLESYENHGNADNSQFYVNLTTQSQAHSYRRGGFNQATRG---RGVTQN 924
            EV++ LL FENR                V + T   A S  RG  NQ   G   RG    
Sbjct: 202  EVYSQLLGFENR----------------VKIRTACAATSGNRGSGNQGRGGGNPRGRGTG 245

Query: 925  TRGGRSQGRTGNYXXXXXXXXXXXXXXCQICHYNNHTADM*FYRTDLNFVPXXXXXXXXX 1104
              GG S GR G +              CQ+CH   H     ++R D N+VP         
Sbjct: 246  RGGGGSGGRGGGHGRGNGRGGTDNRPTCQVCHKKGHVVADCWHRYDENYVP--------- 296

Query: 1105 XXXXTQQTGNSLNPSVHVTNIGNSGNEIQQDMNWYPDSGATNHVTYDLGNLNIASEYQGG 1284
                 ++ G +   +  V            D NWY D+ AT+H+T  L  L    +Y+G 
Sbjct: 297  ----DEKLGGAATHAYGV------------DTNWYVDTEATDHITGQLDKLTTREKYKGT 340

Query: 1285 DKVQLGNGSGLAISHLGSSTVKPSSCVNSHVFHLKNLLHVPHITKNLISVSQFAFDNH 1458
            D++   +G G+ I H+G S V  S    S   HLKN+LHVP  +KNLISV +   DN+
Sbjct: 341  DQIHTASGEGMDIQHIGHSYVPTS----SRPLHLKNILHVPKASKNLISVHRLVADNY 394