BLASTX nr result
ID: Rehmannia27_contig00020069
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia27_contig00020069
(681 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|KYP68473.1| Retrovirus-related Pol polyprotein from transposo... 102 2e-23
emb|CAE02400.1| OSJNBa0024J22.4 [Oryza sativa Japonica Group] gi... 104 3e-22
gb|AAO73240.1| putative polyprotein [Oryza sativa Japonica Group... 97 4e-22
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap... 102 1e-21
gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e... 102 1e-21
gb|ADB85430.1| putative retrotransposon protein [Phyllostachys e... 102 1e-21
dbj|BAA22288.1| polyprotein [Oryza australiensis] 102 2e-21
gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subc... 100 7e-21
emb|CAN69397.1| hypothetical protein VITISV_021035 [Vitis vinifera] 100 8e-21
emb|CAN67199.1| hypothetical protein VITISV_017217 [Vitis vinifera] 99 2e-20
emb|CAN65627.1| hypothetical protein VITISV_032735 [Vitis vinifera] 99 2e-20
emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera] 99 3e-20
gb|AAK52163.1|AC084831_17 putative polyprotein [Oryza sativa Jap... 98 5e-20
gb|ABF97078.1| retrotransposon protein, putative, Ty1-copia subc... 98 5e-20
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa... 97 1e-19
gb|AAO37490.1| putative gag-pol polyprotein [Oryza sativa Japoni... 97 1e-19
gb|ABF96975.1| retrotransposon protein, putative, Ty1-copia subc... 97 1e-19
emb|CAN64055.1| hypothetical protein VITISV_044406 [Vitis vinifera] 97 1e-19
ref|XP_010107341.1| hypothetical protein L484_008147 [Morus nota... 91 2e-19
ref|XP_010111323.1| hypothetical protein L484_027980 [Morus nota... 92 2e-19
>gb|KYP68473.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 187
Score = 102 bits (253), Expect = 2e-23
Identities = 52/81 (64%), Positives = 62/81 (76%)
Frame = -2
Query: 386 PLSFLQNGDNNGAIAQAKEPRSHQRSKHIMRRYHLIREIIGRGDVVVDQVASAENVADPL 207
P+S L DNNGAIAQAKEPRSHQ+SKHI+RRYHLIREII RGDV + +V +N ADP
Sbjct: 105 PISLLC--DNNGAIAQAKEPRSHQKSKHILRRYHLIREIIERGDVKILKVDGKKNAADPF 162
Query: 206 TKPLSQRVFDGHLEKMGLKYM 144
TK L + FD H ++G+KYM
Sbjct: 163 TKALGIKEFDKHKWEVGMKYM 183
>emb|CAE02400.1| OSJNBa0024J22.4 [Oryza sativa Japonica Group]
gi|38347202|emb|CAD40526.2| OSJNBa0023J03.14 [Oryza
sativa Japonica Group] gi|116308930|emb|CAH66059.1|
OSIGBa0125J07.8 [Oryza sativa Indica Group]
gi|116309043|emb|CAH66155.1| OSIGBa0113B06.1 [Oryza
sativa Indica Group]
Length = 704
Score = 104 bits (259), Expect = 3e-22
Identities = 48/73 (65%), Positives = 60/73 (82%)
Frame = -2
Query: 362 DNNGAIAQAKEPRSHQRSKHIMRRYHLIREIIGRGDVVVDQVASAENVADPLTKPLSQRV 183
DN+GAIAQAKEPRSHQ+SKHI+RRYHLIREI+GRGDV + ++ + NVADPLTKPL Q
Sbjct: 630 DNSGAIAQAKEPRSHQKSKHILRRYHLIREIVGRGDVKICKIHTDLNVADPLTKPLPQPK 689
Query: 182 FDGHLEKMGLKYM 144
+ H MG++Y+
Sbjct: 690 HEAHTRAMGIRYV 702
>gb|AAO73240.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108709205|gb|ABF97000.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 146
Score = 97.1 bits (240), Expect = 4e-22
Identities = 44/73 (60%), Positives = 59/73 (80%)
Frame = -2
Query: 362 DNNGAIAQAKEPRSHQRSKHIMRRYHLIREIIGRGDVVVDQVASAENVADPLTKPLSQRV 183
DN+GA+AQAK+PRSHQ+SKHI+RRYHLIREI+GRGDV + ++ + NVADPLTKPL Q
Sbjct: 59 DNSGAVAQAKKPRSHQKSKHILRRYHLIREIVGRGDVKICKIHTDLNVADPLTKPLPQPK 118
Query: 182 FDGHLEKMGLKYM 144
+ MG++++
Sbjct: 119 NEAQTRAMGIRFI 131
>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
gi|62701883|gb|AAX92956.1| retrotransposon protein,
putative, Ty1-copia sub-class [Oryza sativa Japonica
Group] gi|108864259|gb|ABA92827.2| retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1184
Score = 102 bits (255), Expect = 1e-21
Identities = 47/73 (64%), Positives = 60/73 (82%)
Frame = -2
Query: 362 DNNGAIAQAKEPRSHQRSKHIMRRYHLIREIIGRGDVVVDQVASAENVADPLTKPLSQRV 183
DN+GAIAQAKEPRSHQ+SKHI+R+YHLIREI+GRGDV + ++ + NVADPLTKPL Q
Sbjct: 1110 DNSGAIAQAKEPRSHQKSKHILRQYHLIREIVGRGDVKICKIHTDLNVADPLTKPLPQPK 1169
Query: 182 FDGHLEKMGLKYM 144
+ H MG++Y+
Sbjct: 1170 HEAHTRAMGIRYI 1182
>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 1313
Score = 102 bits (255), Expect = 1e-21
Identities = 46/75 (61%), Positives = 61/75 (81%)
Frame = -2
Query: 362 DNNGAIAQAKEPRSHQRSKHIMRRYHLIREIIGRGDVVVDQVASAENVADPLTKPLSQRV 183
DNNGAIAQAKEPRSHQ+SKHI+RRYHLIRE++ RGDV + ++ + NVADPLTKPL+Q
Sbjct: 1239 DNNGAIAQAKEPRSHQKSKHILRRYHLIRELVDRGDVKICKIHTDLNVADPLTKPLTQPK 1298
Query: 182 FDGHLEKMGLKYMGN 138
+ H +G++Y+ +
Sbjct: 1299 HEAHTRAIGIRYLND 1313
>gb|ADB85430.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 896
Score = 102 bits (254), Expect = 1e-21
Identities = 46/73 (63%), Positives = 60/73 (82%)
Frame = -2
Query: 362 DNNGAIAQAKEPRSHQRSKHIMRRYHLIREIIGRGDVVVDQVASAENVADPLTKPLSQRV 183
DNNGAIAQAKEPRSHQ+SKHI+RRYHLIRE++ RGDV + +V + N+ADPLTKPL+Q
Sbjct: 823 DNNGAIAQAKEPRSHQKSKHILRRYHLIRELVDRGDVKICKVHTDLNIADPLTKPLTQPK 882
Query: 182 FDGHLEKMGLKYM 144
+ H +G++Y+
Sbjct: 883 HEAHTRAIGIRYL 895
>dbj|BAA22288.1| polyprotein [Oryza australiensis]
Length = 1317
Score = 102 bits (254), Expect = 2e-21
Identities = 53/107 (49%), Positives = 70/107 (65%)
Frame = -2
Query: 464 RDFLEDAGLFAVPTTGNSFTWCSPRTPLSFLQNGDNNGAIAQAKEPRSHQRSKHIMRRYH 285
+ F+ + G+ TTG +C DN+GAIAQAKEPRSHQ+SKHI+RRYH
Sbjct: 1222 KKFVSELGVMT-STTGPMSLYC------------DNSGAIAQAKEPRSHQKSKHILRRYH 1268
Query: 284 LIREIIGRGDVVVDQVASAENVADPLTKPLSQRVFDGHLEKMGLKYM 144
LIREI+ RGDV + +V + N+ADPLTKPL Q + H MG++Y+
Sbjct: 1269 LIREIVDRGDVKICKVHTDLNIADPLTKPLPQPKHEAHTRAMGIRYL 1315
>gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1745
Score = 100 bits (249), Expect = 7e-21
Identities = 58/128 (45%), Positives = 76/128 (59%), Gaps = 2/128 (1%)
Frame = -2
Query: 521 GHHERSGSGILSQASCQDFRDFLEDAGLFAVPTTGNSFTWCSPRTPLSFLQN--GDNNGA 348
G E +G + + D DF +G F G + +W S T S N DN+GA
Sbjct: 1617 GQEELVVNGYIDASFQTDKDDFRLQSG-FVFCLNGRAVSWKSVMTSASSPMNLYCDNSGA 1675
Query: 347 IAQAKEPRSHQRSKHIMRRYHLIREIIGRGDVVVDQVASAENVADPLTKPLSQRVFDGHL 168
I QAKE RSHQ+SKHI+RRYHLI EI+GRGDV + ++ + NVAD LTKPL Q + H
Sbjct: 1676 IVQAKEHRSHQKSKHILRRYHLIHEIVGRGDVKICKIHTDLNVADLLTKPLPQPKHEAHT 1735
Query: 167 EKMGLKYM 144
MG++Y+
Sbjct: 1736 RAMGIRYV 1743
>emb|CAN69397.1| hypothetical protein VITISV_021035 [Vitis vinifera]
Length = 668
Score = 100 bits (248), Expect = 8e-21
Identities = 44/75 (58%), Positives = 60/75 (80%)
Frame = -2
Query: 362 DNNGAIAQAKEPRSHQRSKHIMRRYHLIREIIGRGDVVVDQVASAENVADPLTKPLSQRV 183
DN+GA+A AKEPR+H++ KHI R++HL+REI+ RGDV V+++ASA N+ADP TK L R
Sbjct: 592 DNSGAVANAKEPRNHRKGKHIERKFHLVREIVSRGDVSVEKIASANNIADPFTKTLPARS 651
Query: 182 FDGHLEKMGLKYMGN 138
F+ HLE MGL+ M +
Sbjct: 652 FEQHLEGMGLREMSH 666
>emb|CAN67199.1| hypothetical protein VITISV_017217 [Vitis vinifera]
Length = 961
Score = 99.4 bits (246), Expect = 2e-20
Identities = 43/75 (57%), Positives = 60/75 (80%)
Frame = -2
Query: 362 DNNGAIAQAKEPRSHQRSKHIMRRYHLIREIIGRGDVVVDQVASAENVADPLTKPLSQRV 183
DN+GA+A AKEP++H++ KHI R++HL+REI+ RGDV+V+ +ASA N+ADP TK L R
Sbjct: 885 DNSGAVANAKEPKNHRKGKHIERKFHLVREIVSRGDVLVENIASANNIADPFTKTLPTRS 944
Query: 182 FDGHLEKMGLKYMGN 138
F+ HLE MGL+ M +
Sbjct: 945 FEQHLEGMGLRDMSH 959
>emb|CAN65627.1| hypothetical protein VITISV_032735 [Vitis vinifera]
Length = 1285
Score = 99.0 bits (245), Expect = 2e-20
Identities = 53/106 (50%), Positives = 72/106 (67%), Gaps = 1/106 (0%)
Frame = -2
Query: 464 RDFLEDAGLFAVPTTGNSFT-WCSPRTPLSFLQNGDNNGAIAQAKEPRSHQRSKHIMRRY 288
R+FL D G+ VP+ + T +C DN+GA+A +KEPRSH+R+KHI R+Y
Sbjct: 1188 RNFLLDLGV--VPSVQSPITLYC------------DNSGAVANSKEPRSHKRAKHIXRKY 1233
Query: 287 HLIREIIGRGDVVVDQVASAENVADPLTKPLSQRVFDGHLEKMGLK 150
HLIR+I+ RGDVVV ++AS N+ADP TK LS F+ H+E MG+K
Sbjct: 1234 HLIRDIVQRGDVVVMKIASENNLADPFTKSLSSTTFERHVEGMGVK 1279
>emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera]
Length = 1544
Score = 98.6 bits (244), Expect = 3e-20
Identities = 53/106 (50%), Positives = 72/106 (67%), Gaps = 1/106 (0%)
Frame = -2
Query: 464 RDFLEDAGLFAVPTTGNSFT-WCSPRTPLSFLQNGDNNGAIAQAKEPRSHQRSKHIMRRY 288
R+FL D G+ VP+ + T +C DN+GA+A +KEPRSH+R+KHI R+Y
Sbjct: 1447 RNFLLDLGV--VPSVQSPITLYC------------DNSGAVANSKEPRSHKRAKHIERKY 1492
Query: 287 HLIREIIGRGDVVVDQVASAENVADPLTKPLSQRVFDGHLEKMGLK 150
HLIR+I+ RGDVVV ++AS N+ADP TK LS F+ H+E MG+K
Sbjct: 1493 HLIRDIVQRGDVVVMKIASENNLADPFTKSLSSTTFERHVEGMGVK 1538
>gb|AAK52163.1|AC084831_17 putative polyprotein [Oryza sativa Japonica Group]
Length = 637
Score = 97.8 bits (242), Expect = 5e-20
Identities = 46/73 (63%), Positives = 57/73 (78%)
Frame = -2
Query: 362 DNNGAIAQAKEPRSHQRSKHIMRRYHLIREIIGRGDVVVDQVASAENVADPLTKPLSQRV 183
DN GAIAQAKEPRSHQ+SKHI+ RYHLIREI+GRGDV + ++ + NVADPL KPL Q
Sbjct: 563 DNIGAIAQAKEPRSHQKSKHILLRYHLIREIVGRGDVKICKINTDLNVADPLRKPLPQPK 622
Query: 182 FDGHLEKMGLKYM 144
+ H MG++Y+
Sbjct: 623 HEAHTRAMGIRYI 635
>gb|ABF97078.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 649
Score = 97.8 bits (242), Expect = 5e-20
Identities = 46/73 (63%), Positives = 57/73 (78%)
Frame = -2
Query: 362 DNNGAIAQAKEPRSHQRSKHIMRRYHLIREIIGRGDVVVDQVASAENVADPLTKPLSQRV 183
DN GAIAQAKEPRSHQ+SKHI+ RYHLIREI+GRGDV + ++ + NVADPL KPL Q
Sbjct: 575 DNIGAIAQAKEPRSHQKSKHILLRYHLIREIVGRGDVKICKINTDLNVADPLRKPLPQPK 634
Query: 182 FDGHLEKMGLKYM 144
+ H MG++Y+
Sbjct: 635 HEAHTRAMGIRYI 647
>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
putative retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 97.1 bits (240), Expect = 1e-19
Identities = 45/73 (61%), Positives = 57/73 (78%)
Frame = -2
Query: 362 DNNGAIAQAKEPRSHQRSKHIMRRYHLIREIIGRGDVVVDQVASAENVADPLTKPLSQRV 183
DNNGAIAQAKEP+SHQ+SKHI RRYHLIREII RGDV + +V++ NVAD TKPL Q
Sbjct: 890 DNNGAIAQAKEPKSHQKSKHIQRRYHLIREIIDRGDVKISRVSTDANVADHFTKPLPQPK 949
Query: 182 FDGHLEKMGLKYM 144
+ H +G++++
Sbjct: 950 HESHTTAIGIRFI 962
>gb|AAO37490.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|41393192|gb|AAS01915.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 547
Score = 96.7 bits (239), Expect = 1e-19
Identities = 45/73 (61%), Positives = 58/73 (79%)
Frame = -2
Query: 362 DNNGAIAQAKEPRSHQRSKHIMRRYHLIREIIGRGDVVVDQVASAENVADPLTKPLSQRV 183
DN+GAIAQAKEPRSHQ+SK+I+R YHLIREI+GRGDV + ++ S NVADPL KP+ Q
Sbjct: 473 DNSGAIAQAKEPRSHQKSKYILRWYHLIREIVGRGDVKICKIHSDLNVADPLIKPVPQPK 532
Query: 182 FDGHLEKMGLKYM 144
+ H MG++Y+
Sbjct: 533 HEAHTRAMGIRYI 545
>gb|ABF96975.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 562
Score = 96.7 bits (239), Expect = 1e-19
Identities = 45/73 (61%), Positives = 58/73 (79%)
Frame = -2
Query: 362 DNNGAIAQAKEPRSHQRSKHIMRRYHLIREIIGRGDVVVDQVASAENVADPLTKPLSQRV 183
DN+GAIAQAKEPRSHQ+SK+I+R YHLIREI+GRGDV + ++ S NVADPL KP+ Q
Sbjct: 488 DNSGAIAQAKEPRSHQKSKYILRWYHLIREIVGRGDVKICKIHSDLNVADPLIKPVPQPK 547
Query: 182 FDGHLEKMGLKYM 144
+ H MG++Y+
Sbjct: 548 HEAHTRAMGIRYI 560
>emb|CAN64055.1| hypothetical protein VITISV_044406 [Vitis vinifera]
Length = 633
Score = 96.7 bits (239), Expect = 1e-19
Identities = 52/106 (49%), Positives = 71/106 (66%), Gaps = 1/106 (0%)
Frame = -2
Query: 464 RDFLEDAGLFAVPTTGNSFT-WCSPRTPLSFLQNGDNNGAIAQAKEPRSHQRSKHIMRRY 288
R+FL D G+ VP+ + T +C DN+GA+A +KEPRSH+R+KHI R+Y
Sbjct: 536 RNFLLDLGV--VPSVQSPITLYC------------DNSGAVANSKEPRSHKRAKHIERKY 581
Query: 287 HLIREIIGRGDVVVDQVASAENVADPLTKPLSQRVFDGHLEKMGLK 150
HLIR+I+ RGD VV ++AS N+ADP TK LS F+ H+E MG+K
Sbjct: 582 HLIRDIVQRGDXVVMKIASENNLADPFTKSLSSXTFERHVEGMGVK 627
>ref|XP_010107341.1| hypothetical protein L484_008147 [Morus notabilis]
gi|587927786|gb|EXC14993.1| hypothetical protein
L484_008147 [Morus notabilis]
Length = 175
Score = 91.3 bits (225), Expect = 2e-19
Identities = 42/66 (63%), Positives = 54/66 (81%)
Frame = -2
Query: 362 DNNGAIAQAKEPRSHQRSKHIMRRYHLIREIIGRGDVVVDQVASAENVADPLTKPLSQRV 183
DN+GA+A +KEPRSH+RSKHI R+YHLIREI+ RGDV V +++ +N+ADP TK LS +V
Sbjct: 99 DNSGAVANSKEPRSHKRSKHIERKYHLIREIVQRGDVEVTKISIHDNLADPFTKALSGKV 158
Query: 182 FDGHLE 165
F HLE
Sbjct: 159 FVSHLE 164
>ref|XP_010111323.1| hypothetical protein L484_027980 [Morus notabilis]
gi|587944319|gb|EXC30801.1| hypothetical protein
L484_027980 [Morus notabilis]
Length = 225
Score = 92.4 bits (228), Expect = 2e-19
Identities = 42/73 (57%), Positives = 56/73 (76%)
Frame = -2
Query: 362 DNNGAIAQAKEPRSHQRSKHIMRRYHLIREIIGRGDVVVDQVASAENVADPLTKPLSQRV 183
DN+GA+A AKEPR+H++ KHI R++HL+REI+ RGDV V++VASA N+ADP K L
Sbjct: 149 DNSGAVANAKEPRNHRKGKHIERKFHLVREIVSRGDVSVEKVASANNIADPFIKTLPAGS 208
Query: 182 FDGHLEKMGLKYM 144
F+ HLE M L+ M
Sbjct: 209 FERHLENMRLRDM 221