BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia27_contig00019700
         (1683 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN76546.1| hypothetical protein VITISV_010420 [Vitis vinifera]   545   e-178
ref|XP_010526684.1| PREDICTED: retrovirus-related Pol polyprotei...   506   e-168
emb|CAA72989.1| unnamed protein product [Brassica oleracea var. ...   515   e-168
ref|XP_010526683.1| PREDICTED: retrovirus-related Pol polyprotei...   506   e-167
ref|XP_010526682.1| PREDICTED: retrovirus-related Pol polyprotei...   506   e-166
ref|XP_010526681.1| PREDICTED: retrovirus-related Pol polyprotei...   506   e-163
ref|XP_010526680.1| PREDICTED: retrovirus-related Pol polyprotei...   506   e-163
ref|XP_010526678.1| PREDICTED: retrovirus-related Pol polyprotei...   506   e-163
gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hop...   494   e-158
gb|AAG10817.1|AC011808_5 Putative retroelement polyprotein [Arab...   489   e-155
gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsi...   489   e-155
gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsi...   489   e-155
emb|CAN65820.1| hypothetical protein VITISV_042324 [Vitis vinifera]   481   e-153
emb|CAN63908.1| hypothetical protein VITISV_044218 [Vitis vinifera]   478   e-152
gb|KYP69518.1| Retrovirus-related Pol polyprotein from transposo...   462   e-152
dbj|BAB10503.1| retroelement pol polyprotein-like [Arabidopsis t...   478   e-150
gb|KYP65734.1| Retrovirus-related Pol polyprotein from transposo...   453   e-145
emb|CAN82526.1| hypothetical protein VITISV_028058 [Vitis vinifera]   450   e-143
emb|CAN74229.1| hypothetical protein VITISV_000584 [Vitis vinifera]   446   e-142
gb|KYP34293.1| Retrovirus-related Pol polyprotein from transposo...   449   e-141

>emb|CAN76546.1| hypothetical protein VITISV_010420 [Vitis vinifera]
          Length = 1288

 Score =  545 bits (1403), Expect = e-178
 Identities = 288/574 (50%), Positives = 353/574 (61%), Gaps = 23/574 (4%)
 Frame = +2

Query: 8    SRGKMIGMGRRKDKLYMLDCKXXXXXXXXXXXXXXXXXXLFHLWHARLGXXXXXXXXXXX 187
            SRGKMIG G RK +LY LD                    +  LWH+RLG           
Sbjct: 373  SRGKMIGKGSRKGQLYQLDFDSFVADKAFVAASRIPTSNILSLWHSRLGHPSFSRLKGLQ 432

Query: 188  XXXXXXXNKIDNHCNVCPLAKQKKLPFSISTSAASKSFALIHCDVWGPFTPVSIEGFKYF 367
                   +     CNVCPLAKQ+ LP+       S +F L+H D+WGPF+  S+EG+K+F
Sbjct: 433  SVLDFDSSFDLTPCNVCPLAKQRCLPYISLNKRCSSTFDLLHLDIWGPFSVGSVEGYKFF 492

Query: 368  LTIVDDFSRFTWVYLMKQKSEASHLICTFFNLVRNQFNASIKVIRCDNAPEFMLSDFCKQ 547
            LTIVDD+SR TWVY++K KSE    I  FF  V+ QF   +K IR DNAPE  LS+F   
Sbjct: 493  LTIVDDYSRVTWVYMLKNKSEVQKYIPDFFAFVKKQFGKEVKAIRSDNAPELFLSNFYHS 552

Query: 548  NGIEIQHSCVETPQQNGRVERKHQHLLNVARSLLFQSHVPIDYWSDCVLTSTYLINRTPS 727
             G+    SCVETPQQN  VERKHQH+LNVAR+LLF S +P+ YWSDC+LT+ YLINRTPS
Sbjct: 553  LGVIHYRSCVETPQQNSVVERKHQHILNVARALLFXSSLPVCYWSDCILTAVYLINRTPS 612

Query: 728  PLLGHKTPFQLLFNKTPNYSHLRVFGCLAYGSTLDRTRTKFSPRAIRSVFLGYPAGYKGY 907
            P L +KTPF++L +K P+YSHLRVFGCL Y STL   RTKFSPRA  +VFLGYP G+KGY
Sbjct: 613  PFLNNKTPFEILHDKLPDYSHLRVFGCLCYVSTLKANRTKFSPRAKAAVFLGYPFGFKGY 672

Query: 908  KLLDLTTNKIYISRNVSFHENMFPFREEATHEASIP--HSQIFSDQILP-ISPDPNKSSF 1078
            KLLD+ T  I ISRN              T+  S P   S +F D++LP I+ D ++SS 
Sbjct: 673  KLLDIETRSISISRN--------------TNPCSSPDISSDLFHDRVLPCIAADNDQSSS 718

Query: 1079 --------PQASLSPATRSGRVIKSPSYLQDYVC------------STVYPLSKFLTYDR 1198
                    P   ++P++R  RV K PSYL+DY C            ST +P+  FL+YD+
Sbjct: 719  VLPRVVSQPPLQVAPSSRPTRVSKQPSYLKDYHCSLINSVAHVETHSTSHPIQHFLSYDK 778

Query: 1199 LXXXXXXXXXXXXXXTEPQSYTQAAHIPEWQQAMLVELKALEANNTWELTRLPAGKKSIG 1378
            L              +EP S+ +AA IPEW+ AM  EL+ALE N T  +  LP GK  +G
Sbjct: 779  LSPSYKLFSLSVSIISEPSSFAKAAEIPEWRAAMDCELEALEENKTXSIVSLPVGKHPVG 838

Query: 1379 CKWVYKVKYHADGTIERYKARLVAKGYTQHEGIDYLDTFSPXXXXXXXXXXXXXXXXXGW 1558
            CKWVYK K+  DGTIERYKARLVAKGYTQ EGIDY+DTFSP                 GW
Sbjct: 839  CKWVYKXKHKXDGTIERYKARLVAKGYTQREGIDYVDTFSPVAKLVTVKLLLAIAAVKGW 898

Query: 1559 ILIQLDVNNAFLHGELDQEIYMDLPPGFQRQGES 1660
             L QLDVNNAFLHG+L++E+YM LPPG+ R+GES
Sbjct: 899  HLSQLDVNNAFLHGDLNEEVYMKLPPGYNRKGES 932


>ref|XP_010526684.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
            1-94 isoform X6 [Tarenaya hassleriana]
          Length = 789

 Score =  506 bits (1302), Expect = e-168
 Identities = 278/600 (46%), Positives = 352/600 (58%), Gaps = 48/600 (8%)
 Frame = +2

Query: 2    DLSRGKMIGMGRRKDKLYMLDC--KXXXXXXXXXXXXXXXXXXLFHLWHARLGXXXXXXX 175
            DL+RG MIG G++   LY+L+                       F LWH RLG       
Sbjct: 44   DLTRGLMIGKGKQLHNLYILEMLHTSSTTISLPSKFCTTLSATTFDLWHHRLGHPSDIRV 103

Query: 176  XXXXXXXXXXXNKIDNH---CNVCPLAKQKKLPFSISTSAASKSFALIHCDVWGPFTPVS 346
                       +  +     C VCPLAKQ++L F +S+  +   F L+H DVWGP + +S
Sbjct: 104  HSIDKSSELKFSTSETSSISCPVCPLAKQRRLSFPVSSHVSKFPFELLHVDVWGPCSEIS 163

Query: 347  IEGFKYFLTIVDDFSRFTWVYLMKQKSEASHLICTFFNLVRNQFNASIKVIRCDNAPEFM 526
             +G ++FL+IVDD+SR TWVYL+K KS+       F + V NQFNASIK +R DNAPE  
Sbjct: 164  TDGHRFFLSIVDDYSRCTWVYLLKSKSDVLQKFPEFVSFVENQFNASIKCVRSDNAPELG 223

Query: 527  LSDFCKQNGIEIQHSCVETPQQNGRVERKHQHLLNVARSLLFQSHVPIDYWSDCVLTSTY 706
                  + GI  Q SC  TPQQN  VERKHQH+LNVAR+LLFQS+VP+ +W DC+LTS Y
Sbjct: 224  FKSLFAKKGILHQFSCPYTPQQNSIVERKHQHILNVARALLFQSNVPLAFWGDCILTSVY 283

Query: 707  LINRTPSPLLGHKTPFQLLFNKTPNYSHLRVFGCLAYGSTLDRTRTKFSPRAIRSVFLGY 886
            LINRTPSPLL +KTPF+LL   +P+YSHLRVFGCL Y STL + R KF+PRA+ +VFLGY
Sbjct: 284  LINRTPSPLLQNKTPFELLTGCSPSYSHLRVFGCLCYVSTLTKDRHKFNPRAMSAVFLGY 343

Query: 887  PAGYKGYKLLDLTTNKIYISRNVSFHENMFPFR----------------EEATHEASIPH 1018
            P G KGYK+LDL +N + ISRNV FHE  FPF+                    +E+  P 
Sbjct: 344  PHGVKGYKVLDLHSNAVLISRNVVFHETTFPFKSFPQSQPALDPFPQSVSPFFYESISPQ 403

Query: 1019 SQIFSDQILPIS----PDP---------NKSSFPQASLSPATRSGRVIKSPSYLQDYVC- 1156
            +   S  + P+S     DP         + S F  +S +  TR  R  K+P+YL DY C 
Sbjct: 404  NLSSSSALSPVSQEFPTDPISSLGSSETDSSGFVTSSSAHVTRPQRQSKTPAYLSDYHCY 463

Query: 1157 ------------STVYPLSKFLTYDRLXXXXXXXXXXXXXXTEPQSYTQAAHIPEWQQAM 1300
                         T YPLS  LTYD L               EPQSYTQAA    W+QAM
Sbjct: 464  LISHNSTPHPNPVTPYPLSACLTYDLLSPSYRTFALNITTAPEPQSYTQAAKFESWRQAM 523

Query: 1301 LVELKALEANNTWELTRLPAGKKSIGCKWVYKVKYHADGTIERYKARLVAKGYTQHEGID 1480
             +EL+AL   NTW +  LP GK ++GCKWV+K KY+ADG+IER+KARLVAKGYTQ EG+D
Sbjct: 524  KLELEALIRTNTWSICTLPDGKNAVGCKWVFKTKYNADGSIERHKARLVAKGYTQLEGVD 583

Query: 1481 YLDTFSPXXXXXXXXXXXXXXXXXGWILIQLDVNNAFLHGELDQEIYMDLPPGF-QRQGE 1657
            + +TFSP                  W++ Q+DV+NAFL+G+LD+EIYM LPPG+   QGE
Sbjct: 584  FSETFSPVAKMTTVRVLLALAAKYNWLINQMDVSNAFLNGDLDEEIYMKLPPGYSDLQGE 643


>emb|CAA72989.1| unnamed protein product [Brassica oleracea var. viridis]
          Length = 1131

 Score =  515 bits (1326), Expect = e-168
 Identities = 269/568 (47%), Positives = 354/568 (62%), Gaps = 8/568 (1%)
 Frame = +2

Query: 2    DLSRGKMIGMGRRKDKLYMLDCKXXXXXXXXXXXXXXXXXXLFHLWHARLGXXXXXXXXX 181
            D ++G  IG GRR   LY+LD K                     LWH RLG         
Sbjct: 481  DPTKGWTIGQGRRVANLYVLDVKSSPMKINAVVD--------ISLWHKRLGHPSYTRLDK 532

Query: 182  XXXXXXXXX--NKIDNHCNVCPLAKQKKLPFSISTSAASKSFALIHCDVWGPFTPVSIEG 355
                       NK D HC+VC LAKQKKL +S      + SF L+H DVWGPF+  ++EG
Sbjct: 533  ISEALGTTKHKNKGDAHCHVCHLAKQKKLSYSSQNHICTASFQLLHVDVWGPFSVETLEG 592

Query: 356  FKYFLTIVDDFSRFTWVYLMKQKSEASHLICTFFNLVRNQFNASIKVIRCDNAPEFMLSD 535
            +KYFLTIVDD SR TW+YL++ KS+  H+  TF N +  Q+N  IK +R DNAPE   ++
Sbjct: 593  YKYFLTIVDDHSRATWIYLLQSKSDVLHIFPTFVNQIETQYNTKIKSVRRDNAPELSFTE 652

Query: 536  FCKQNGIEIQHSCVETPQQNGRVERKHQHLLNVARSLLFQSHVPIDYWSDCVLTSTYLIN 715
              K+ GI   HSC ET +QN  +ERKHQHLLNVAR+L+FQS VP+ YW DCVLT+ +LIN
Sbjct: 653  LFKEKGIVSYHSCPETLEQNSVLERKHQHLLNVARALMFQSQVPLQYWGDCVLTAAFLIN 712

Query: 716  RTPSPLLGHKTPFQLLFNKTPNYSHLRVFGCLAYGSTLDRTRTKFSPRAIRSVFLGYPAG 895
            RTPSPLL +K+P+++L  K P Y  LR FGCL YGST  + R KF PR+   VFLGYP+G
Sbjct: 713  RTPSPLLANKSPYEVLMGKAPQYDQLRTFGCLCYGSTSPKQRHKFMPRSRACVFLGYPSG 772

Query: 896  YKGYKLLDLTTNKIYISRNVSFHENMFPFREEATHEASIPHSQIFSDQI-LPISPDPNKS 1072
            YKGYKLLDL +NKIYISRNV+FHE++FP  +    + S  H   F  ++ +P +P PN S
Sbjct: 773  YKGYKLLDLESNKIYISRNVTFHEDIFPMAKHQKMDESSLH--FFPPKVTVPSAPSPNIS 830

Query: 1073 SFPQASLSPATRSGRVIKSPSYLQDYVCSTV----YPLSKFLTYDRLXXXXXXXXXXXXX 1240
            S P ++LSP   S R    P++L+D+ C +V    YP+S  L+Y ++             
Sbjct: 831  SSPFSTLSPQI-SKRQRTVPAHLKDFHCYSVHDSAYPISSTLSYSQISSHHLAYINSITN 889

Query: 1241 XTEPQSYTQAAHIPEWQQAMLVELKALEANNTWELTRLPAGKKSIGCKWVYKVKYHADGT 1420
               PQSY +     EW ++   EL A+E N+TW++  LP GKK+IGC+WV+ +K++ADGT
Sbjct: 890  IPIPQSYAEVRQSKEWTESADKELDAMEENDTWDVVPLPKGKKAIGCRWVHTLKFNADGT 949

Query: 1421 IERYKARLVAKGYTQHEGIDYLDTFSPXXXXXXXXXXXXXXXXXGWILIQLDVNNAFLHG 1600
            +ER K+RLV KGYTQ EG+DY++TFSP                  W L QLD++NAFL+G
Sbjct: 950  LERRKSRLVGKGYTQKEGLDYIETFSPVAKMATVKLLLKVGASKKWFLHQLDISNAFLNG 1009

Query: 1601 ELDQEIYMDLPPGF-QRQGESSVPPGTV 1681
            ELD+EIYM LP G+ +R+G+  +PP  V
Sbjct: 1010 ELDEEIYMKLPEGYAERKGD--LPPNAV 1035


>ref|XP_010526683.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
            1-94 isoform X5 [Tarenaya hassleriana]
          Length = 886

 Score =  506 bits (1302), Expect = e-167
 Identities = 278/600 (46%), Positives = 352/600 (58%), Gaps = 48/600 (8%)
 Frame = +2

Query: 2    DLSRGKMIGMGRRKDKLYMLDC--KXXXXXXXXXXXXXXXXXXLFHLWHARLGXXXXXXX 175
            DL+RG MIG G++   LY+L+                       F LWH RLG       
Sbjct: 141  DLTRGLMIGKGKQLHNLYILEMLHTSSTTISLPSKFCTTLSATTFDLWHHRLGHPSDIRV 200

Query: 176  XXXXXXXXXXXNKIDNH---CNVCPLAKQKKLPFSISTSAASKSFALIHCDVWGPFTPVS 346
                       +  +     C VCPLAKQ++L F +S+  +   F L+H DVWGP + +S
Sbjct: 201  HSIDKSSELKFSTSETSSISCPVCPLAKQRRLSFPVSSHVSKFPFELLHVDVWGPCSEIS 260

Query: 347  IEGFKYFLTIVDDFSRFTWVYLMKQKSEASHLICTFFNLVRNQFNASIKVIRCDNAPEFM 526
             +G ++FL+IVDD+SR TWVYL+K KS+       F + V NQFNASIK +R DNAPE  
Sbjct: 261  TDGHRFFLSIVDDYSRCTWVYLLKSKSDVLQKFPEFVSFVENQFNASIKCVRSDNAPELG 320

Query: 527  LSDFCKQNGIEIQHSCVETPQQNGRVERKHQHLLNVARSLLFQSHVPIDYWSDCVLTSTY 706
                  + GI  Q SC  TPQQN  VERKHQH+LNVAR+LLFQS+VP+ +W DC+LTS Y
Sbjct: 321  FKSLFAKKGILHQFSCPYTPQQNSIVERKHQHILNVARALLFQSNVPLAFWGDCILTSVY 380

Query: 707  LINRTPSPLLGHKTPFQLLFNKTPNYSHLRVFGCLAYGSTLDRTRTKFSPRAIRSVFLGY 886
            LINRTPSPLL +KTPF+LL   +P+YSHLRVFGCL Y STL + R KF+PRA+ +VFLGY
Sbjct: 381  LINRTPSPLLQNKTPFELLTGCSPSYSHLRVFGCLCYVSTLTKDRHKFNPRAMSAVFLGY 440

Query: 887  PAGYKGYKLLDLTTNKIYISRNVSFHENMFPFR----------------EEATHEASIPH 1018
            P G KGYK+LDL +N + ISRNV FHE  FPF+                    +E+  P 
Sbjct: 441  PHGVKGYKVLDLHSNAVLISRNVVFHETTFPFKSFPQSQPALDPFPQSVSPFFYESISPQ 500

Query: 1019 SQIFSDQILPIS----PDP---------NKSSFPQASLSPATRSGRVIKSPSYLQDYVC- 1156
            +   S  + P+S     DP         + S F  +S +  TR  R  K+P+YL DY C 
Sbjct: 501  NLSSSSALSPVSQEFPTDPISSLGSSETDSSGFVTSSSAHVTRPQRQSKTPAYLSDYHCY 560

Query: 1157 ------------STVYPLSKFLTYDRLXXXXXXXXXXXXXXTEPQSYTQAAHIPEWQQAM 1300
                         T YPLS  LTYD L               EPQSYTQAA    W+QAM
Sbjct: 561  LISHNSTPHPNPVTPYPLSACLTYDLLSPSYRTFALNITTAPEPQSYTQAAKFESWRQAM 620

Query: 1301 LVELKALEANNTWELTRLPAGKKSIGCKWVYKVKYHADGTIERYKARLVAKGYTQHEGID 1480
             +EL+AL   NTW +  LP GK ++GCKWV+K KY+ADG+IER+KARLVAKGYTQ EG+D
Sbjct: 621  KLELEALIRTNTWSICTLPDGKNAVGCKWVFKTKYNADGSIERHKARLVAKGYTQLEGVD 680

Query: 1481 YLDTFSPXXXXXXXXXXXXXXXXXGWILIQLDVNNAFLHGELDQEIYMDLPPGF-QRQGE 1657
            + +TFSP                  W++ Q+DV+NAFL+G+LD+EIYM LPPG+   QGE
Sbjct: 681  FSETFSPVAKMTTVRVLLALAAKYNWLINQMDVSNAFLNGDLDEEIYMKLPPGYSDLQGE 740


>ref|XP_010526682.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
            1-94 isoform X4 [Tarenaya hassleriana]
          Length = 940

 Score =  506 bits (1302), Expect = e-166
 Identities = 278/600 (46%), Positives = 352/600 (58%), Gaps = 48/600 (8%)
 Frame = +2

Query: 2    DLSRGKMIGMGRRKDKLYMLDC--KXXXXXXXXXXXXXXXXXXLFHLWHARLGXXXXXXX 175
            DL+RG MIG G++   LY+L+                       F LWH RLG       
Sbjct: 195  DLTRGLMIGKGKQLHNLYILEMLHTSSTTISLPSKFCTTLSATTFDLWHHRLGHPSDIRV 254

Query: 176  XXXXXXXXXXXNKIDNH---CNVCPLAKQKKLPFSISTSAASKSFALIHCDVWGPFTPVS 346
                       +  +     C VCPLAKQ++L F +S+  +   F L+H DVWGP + +S
Sbjct: 255  HSIDKSSELKFSTSETSSISCPVCPLAKQRRLSFPVSSHVSKFPFELLHVDVWGPCSEIS 314

Query: 347  IEGFKYFLTIVDDFSRFTWVYLMKQKSEASHLICTFFNLVRNQFNASIKVIRCDNAPEFM 526
             +G ++FL+IVDD+SR TWVYL+K KS+       F + V NQFNASIK +R DNAPE  
Sbjct: 315  TDGHRFFLSIVDDYSRCTWVYLLKSKSDVLQKFPEFVSFVENQFNASIKCVRSDNAPELG 374

Query: 527  LSDFCKQNGIEIQHSCVETPQQNGRVERKHQHLLNVARSLLFQSHVPIDYWSDCVLTSTY 706
                  + GI  Q SC  TPQQN  VERKHQH+LNVAR+LLFQS+VP+ +W DC+LTS Y
Sbjct: 375  FKSLFAKKGILHQFSCPYTPQQNSIVERKHQHILNVARALLFQSNVPLAFWGDCILTSVY 434

Query: 707  LINRTPSPLLGHKTPFQLLFNKTPNYSHLRVFGCLAYGSTLDRTRTKFSPRAIRSVFLGY 886
            LINRTPSPLL +KTPF+LL   +P+YSHLRVFGCL Y STL + R KF+PRA+ +VFLGY
Sbjct: 435  LINRTPSPLLQNKTPFELLTGCSPSYSHLRVFGCLCYVSTLTKDRHKFNPRAMSAVFLGY 494

Query: 887  PAGYKGYKLLDLTTNKIYISRNVSFHENMFPFR----------------EEATHEASIPH 1018
            P G KGYK+LDL +N + ISRNV FHE  FPF+                    +E+  P 
Sbjct: 495  PHGVKGYKVLDLHSNAVLISRNVVFHETTFPFKSFPQSQPALDPFPQSVSPFFYESISPQ 554

Query: 1019 SQIFSDQILPIS----PDP---------NKSSFPQASLSPATRSGRVIKSPSYLQDYVC- 1156
            +   S  + P+S     DP         + S F  +S +  TR  R  K+P+YL DY C 
Sbjct: 555  NLSSSSALSPVSQEFPTDPISSLGSSETDSSGFVTSSSAHVTRPQRQSKTPAYLSDYHCY 614

Query: 1157 ------------STVYPLSKFLTYDRLXXXXXXXXXXXXXXTEPQSYTQAAHIPEWQQAM 1300
                         T YPLS  LTYD L               EPQSYTQAA    W+QAM
Sbjct: 615  LISHNSTPHPNPVTPYPLSACLTYDLLSPSYRTFALNITTAPEPQSYTQAAKFESWRQAM 674

Query: 1301 LVELKALEANNTWELTRLPAGKKSIGCKWVYKVKYHADGTIERYKARLVAKGYTQHEGID 1480
             +EL+AL   NTW +  LP GK ++GCKWV+K KY+ADG+IER+KARLVAKGYTQ EG+D
Sbjct: 675  KLELEALIRTNTWSICTLPDGKNAVGCKWVFKTKYNADGSIERHKARLVAKGYTQLEGVD 734

Query: 1481 YLDTFSPXXXXXXXXXXXXXXXXXGWILIQLDVNNAFLHGELDQEIYMDLPPGF-QRQGE 1657
            + +TFSP                  W++ Q+DV+NAFL+G+LD+EIYM LPPG+   QGE
Sbjct: 735  FSETFSPVAKMTTVRVLLALAAKYNWLINQMDVSNAFLNGDLDEEIYMKLPPGYSDLQGE 794


>ref|XP_010526681.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
            1-94 isoform X3 [Tarenaya hassleriana]
          Length = 1238

 Score =  506 bits (1302), Expect = e-163
 Identities = 278/600 (46%), Positives = 352/600 (58%), Gaps = 48/600 (8%)
 Frame = +2

Query: 2    DLSRGKMIGMGRRKDKLYMLDC--KXXXXXXXXXXXXXXXXXXLFHLWHARLGXXXXXXX 175
            DL+RG MIG G++   LY+L+                       F LWH RLG       
Sbjct: 530  DLTRGLMIGKGKQLHNLYILEMLHTSSTTISLPSKFCTTLSATTFDLWHHRLGHPSDIRV 589

Query: 176  XXXXXXXXXXXNKIDNH---CNVCPLAKQKKLPFSISTSAASKSFALIHCDVWGPFTPVS 346
                       +  +     C VCPLAKQ++L F +S+  +   F L+H DVWGP + +S
Sbjct: 590  HSIDKSSELKFSTSETSSISCPVCPLAKQRRLSFPVSSHVSKFPFELLHVDVWGPCSEIS 649

Query: 347  IEGFKYFLTIVDDFSRFTWVYLMKQKSEASHLICTFFNLVRNQFNASIKVIRCDNAPEFM 526
             +G ++FL+IVDD+SR TWVYL+K KS+       F + V NQFNASIK +R DNAPE  
Sbjct: 650  TDGHRFFLSIVDDYSRCTWVYLLKSKSDVLQKFPEFVSFVENQFNASIKCVRSDNAPELG 709

Query: 527  LSDFCKQNGIEIQHSCVETPQQNGRVERKHQHLLNVARSLLFQSHVPIDYWSDCVLTSTY 706
                  + GI  Q SC  TPQQN  VERKHQH+LNVAR+LLFQS+VP+ +W DC+LTS Y
Sbjct: 710  FKSLFAKKGILHQFSCPYTPQQNSIVERKHQHILNVARALLFQSNVPLAFWGDCILTSVY 769

Query: 707  LINRTPSPLLGHKTPFQLLFNKTPNYSHLRVFGCLAYGSTLDRTRTKFSPRAIRSVFLGY 886
            LINRTPSPLL +KTPF+LL   +P+YSHLRVFGCL Y STL + R KF+PRA+ +VFLGY
Sbjct: 770  LINRTPSPLLQNKTPFELLTGCSPSYSHLRVFGCLCYVSTLTKDRHKFNPRAMSAVFLGY 829

Query: 887  PAGYKGYKLLDLTTNKIYISRNVSFHENMFPFR----------------EEATHEASIPH 1018
            P G KGYK+LDL +N + ISRNV FHE  FPF+                    +E+  P 
Sbjct: 830  PHGVKGYKVLDLHSNAVLISRNVVFHETTFPFKSFPQSQPALDPFPQSVSPFFYESISPQ 889

Query: 1019 SQIFSDQILPIS----PDP---------NKSSFPQASLSPATRSGRVIKSPSYLQDYVC- 1156
            +   S  + P+S     DP         + S F  +S +  TR  R  K+P+YL DY C 
Sbjct: 890  NLSSSSALSPVSQEFPTDPISSLGSSETDSSGFVTSSSAHVTRPQRQSKTPAYLSDYHCY 949

Query: 1157 ------------STVYPLSKFLTYDRLXXXXXXXXXXXXXXTEPQSYTQAAHIPEWQQAM 1300
                         T YPLS  LTYD L               EPQSYTQAA    W+QAM
Sbjct: 950  LISHNSTPHPNPVTPYPLSACLTYDLLSPSYRTFALNITTAPEPQSYTQAAKFESWRQAM 1009

Query: 1301 LVELKALEANNTWELTRLPAGKKSIGCKWVYKVKYHADGTIERYKARLVAKGYTQHEGID 1480
             +EL+AL   NTW +  LP GK ++GCKWV+K KY+ADG+IER+KARLVAKGYTQ EG+D
Sbjct: 1010 KLELEALIRTNTWSICTLPDGKNAVGCKWVFKTKYNADGSIERHKARLVAKGYTQLEGVD 1069

Query: 1481 YLDTFSPXXXXXXXXXXXXXXXXXGWILIQLDVNNAFLHGELDQEIYMDLPPGF-QRQGE 1657
            + +TFSP                  W++ Q+DV+NAFL+G+LD+EIYM LPPG+   QGE
Sbjct: 1070 FSETFSPVAKMTTVRVLLALAAKYNWLINQMDVSNAFLNGDLDEEIYMKLPPGYSDLQGE 1129


>ref|XP_010526680.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
            1-94 isoform X2 [Tarenaya hassleriana]
          Length = 1244

 Score =  506 bits (1302), Expect = e-163
 Identities = 278/600 (46%), Positives = 352/600 (58%), Gaps = 48/600 (8%)
 Frame = +2

Query: 2    DLSRGKMIGMGRRKDKLYMLDC--KXXXXXXXXXXXXXXXXXXLFHLWHARLGXXXXXXX 175
            DL+RG MIG G++   LY+L+                       F LWH RLG       
Sbjct: 499  DLTRGLMIGKGKQLHNLYILEMLHTSSTTISLPSKFCTTLSATTFDLWHHRLGHPSDIRV 558

Query: 176  XXXXXXXXXXXNKIDNH---CNVCPLAKQKKLPFSISTSAASKSFALIHCDVWGPFTPVS 346
                       +  +     C VCPLAKQ++L F +S+  +   F L+H DVWGP + +S
Sbjct: 559  HSIDKSSELKFSTSETSSISCPVCPLAKQRRLSFPVSSHVSKFPFELLHVDVWGPCSEIS 618

Query: 347  IEGFKYFLTIVDDFSRFTWVYLMKQKSEASHLICTFFNLVRNQFNASIKVIRCDNAPEFM 526
             +G ++FL+IVDD+SR TWVYL+K KS+       F + V NQFNASIK +R DNAPE  
Sbjct: 619  TDGHRFFLSIVDDYSRCTWVYLLKSKSDVLQKFPEFVSFVENQFNASIKCVRSDNAPELG 678

Query: 527  LSDFCKQNGIEIQHSCVETPQQNGRVERKHQHLLNVARSLLFQSHVPIDYWSDCVLTSTY 706
                  + GI  Q SC  TPQQN  VERKHQH+LNVAR+LLFQS+VP+ +W DC+LTS Y
Sbjct: 679  FKSLFAKKGILHQFSCPYTPQQNSIVERKHQHILNVARALLFQSNVPLAFWGDCILTSVY 738

Query: 707  LINRTPSPLLGHKTPFQLLFNKTPNYSHLRVFGCLAYGSTLDRTRTKFSPRAIRSVFLGY 886
            LINRTPSPLL +KTPF+LL   +P+YSHLRVFGCL Y STL + R KF+PRA+ +VFLGY
Sbjct: 739  LINRTPSPLLQNKTPFELLTGCSPSYSHLRVFGCLCYVSTLTKDRHKFNPRAMSAVFLGY 798

Query: 887  PAGYKGYKLLDLTTNKIYISRNVSFHENMFPFR----------------EEATHEASIPH 1018
            P G KGYK+LDL +N + ISRNV FHE  FPF+                    +E+  P 
Sbjct: 799  PHGVKGYKVLDLHSNAVLISRNVVFHETTFPFKSFPQSQPALDPFPQSVSPFFYESISPQ 858

Query: 1019 SQIFSDQILPIS----PDP---------NKSSFPQASLSPATRSGRVIKSPSYLQDYVC- 1156
            +   S  + P+S     DP         + S F  +S +  TR  R  K+P+YL DY C 
Sbjct: 859  NLSSSSALSPVSQEFPTDPISSLGSSETDSSGFVTSSSAHVTRPQRQSKTPAYLSDYHCY 918

Query: 1157 ------------STVYPLSKFLTYDRLXXXXXXXXXXXXXXTEPQSYTQAAHIPEWQQAM 1300
                         T YPLS  LTYD L               EPQSYTQAA    W+QAM
Sbjct: 919  LISHNSTPHPNPVTPYPLSACLTYDLLSPSYRTFALNITTAPEPQSYTQAAKFESWRQAM 978

Query: 1301 LVELKALEANNTWELTRLPAGKKSIGCKWVYKVKYHADGTIERYKARLVAKGYTQHEGID 1480
             +EL+AL   NTW +  LP GK ++GCKWV+K KY+ADG+IER+KARLVAKGYTQ EG+D
Sbjct: 979  KLELEALIRTNTWSICTLPDGKNAVGCKWVFKTKYNADGSIERHKARLVAKGYTQLEGVD 1038

Query: 1481 YLDTFSPXXXXXXXXXXXXXXXXXGWILIQLDVNNAFLHGELDQEIYMDLPPGF-QRQGE 1657
            + +TFSP                  W++ Q+DV+NAFL+G+LD+EIYM LPPG+   QGE
Sbjct: 1039 FSETFSPVAKMTTVRVLLALAAKYNWLINQMDVSNAFLNGDLDEEIYMKLPPGYSDLQGE 1098


>ref|XP_010526678.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
            1-94 isoform X1 [Tarenaya hassleriana]
          Length = 1275

 Score =  506 bits (1302), Expect = e-163
 Identities = 278/600 (46%), Positives = 352/600 (58%), Gaps = 48/600 (8%)
 Frame = +2

Query: 2    DLSRGKMIGMGRRKDKLYMLDC--KXXXXXXXXXXXXXXXXXXLFHLWHARLGXXXXXXX 175
            DL+RG MIG G++   LY+L+                       F LWH RLG       
Sbjct: 530  DLTRGLMIGKGKQLHNLYILEMLHTSSTTISLPSKFCTTLSATTFDLWHHRLGHPSDIRV 589

Query: 176  XXXXXXXXXXXNKIDNH---CNVCPLAKQKKLPFSISTSAASKSFALIHCDVWGPFTPVS 346
                       +  +     C VCPLAKQ++L F +S+  +   F L+H DVWGP + +S
Sbjct: 590  HSIDKSSELKFSTSETSSISCPVCPLAKQRRLSFPVSSHVSKFPFELLHVDVWGPCSEIS 649

Query: 347  IEGFKYFLTIVDDFSRFTWVYLMKQKSEASHLICTFFNLVRNQFNASIKVIRCDNAPEFM 526
             +G ++FL+IVDD+SR TWVYL+K KS+       F + V NQFNASIK +R DNAPE  
Sbjct: 650  TDGHRFFLSIVDDYSRCTWVYLLKSKSDVLQKFPEFVSFVENQFNASIKCVRSDNAPELG 709

Query: 527  LSDFCKQNGIEIQHSCVETPQQNGRVERKHQHLLNVARSLLFQSHVPIDYWSDCVLTSTY 706
                  + GI  Q SC  TPQQN  VERKHQH+LNVAR+LLFQS+VP+ +W DC+LTS Y
Sbjct: 710  FKSLFAKKGILHQFSCPYTPQQNSIVERKHQHILNVARALLFQSNVPLAFWGDCILTSVY 769

Query: 707  LINRTPSPLLGHKTPFQLLFNKTPNYSHLRVFGCLAYGSTLDRTRTKFSPRAIRSVFLGY 886
            LINRTPSPLL +KTPF+LL   +P+YSHLRVFGCL Y STL + R KF+PRA+ +VFLGY
Sbjct: 770  LINRTPSPLLQNKTPFELLTGCSPSYSHLRVFGCLCYVSTLTKDRHKFNPRAMSAVFLGY 829

Query: 887  PAGYKGYKLLDLTTNKIYISRNVSFHENMFPFR----------------EEATHEASIPH 1018
            P G KGYK+LDL +N + ISRNV FHE  FPF+                    +E+  P 
Sbjct: 830  PHGVKGYKVLDLHSNAVLISRNVVFHETTFPFKSFPQSQPALDPFPQSVSPFFYESISPQ 889

Query: 1019 SQIFSDQILPIS----PDP---------NKSSFPQASLSPATRSGRVIKSPSYLQDYVC- 1156
            +   S  + P+S     DP         + S F  +S +  TR  R  K+P+YL DY C 
Sbjct: 890  NLSSSSALSPVSQEFPTDPISSLGSSETDSSGFVTSSSAHVTRPQRQSKTPAYLSDYHCY 949

Query: 1157 ------------STVYPLSKFLTYDRLXXXXXXXXXXXXXXTEPQSYTQAAHIPEWQQAM 1300
                         T YPLS  LTYD L               EPQSYTQAA    W+QAM
Sbjct: 950  LISHNSTPHPNPVTPYPLSACLTYDLLSPSYRTFALNITTAPEPQSYTQAAKFESWRQAM 1009

Query: 1301 LVELKALEANNTWELTRLPAGKKSIGCKWVYKVKYHADGTIERYKARLVAKGYTQHEGID 1480
             +EL+AL   NTW +  LP GK ++GCKWV+K KY+ADG+IER+KARLVAKGYTQ EG+D
Sbjct: 1010 KLELEALIRTNTWSICTLPDGKNAVGCKWVFKTKYNADGSIERHKARLVAKGYTQLEGVD 1069

Query: 1481 YLDTFSPXXXXXXXXXXXXXXXXXGWILIQLDVNNAFLHGELDQEIYMDLPPGF-QRQGE 1657
            + +TFSP                  W++ Q+DV+NAFL+G+LD+EIYM LPPG+   QGE
Sbjct: 1070 FSETFSPVAKMTTVRVLLALAAKYNWLINQMDVSNAFLNGDLDEEIYMKLPPGYSDLQGE 1129


>gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hopscotch polyprotein
            (gb|U12626) [Arabidopsis thaliana]
          Length = 1315

 Score =  494 bits (1271), Expect = e-158
 Identities = 260/583 (44%), Positives = 342/583 (58%), Gaps = 23/583 (3%)
 Frame = +2

Query: 2    DLSRGKMIGMGRRKDKLYMLDCKXXXXXXXXXXXXXXXXXXLFHLWHARLGXXXXXXXXX 181
            D +R  M+GMG++   LY++D                       LWH RLG         
Sbjct: 363  DATRELMVGMGKQVANLYIVDLDSLSHPGTDSSITVASVTS-HDLWHKRLGHPSVQKLQP 421

Query: 182  XXXXXXXXX--NKIDNHCNVCPLAKQKKLPFSISTSAASKSFALIHCDVWGPFTPVSIEG 355
                       N  D HC VC ++KQK LPF    + +S+ F LIH D WGPF+  + +G
Sbjct: 422  MSSLLSFPKQKNNTDFHCRVCHISKQKHLPFVSHNNKSSRPFDLIHIDTWGPFSVQTHDG 481

Query: 356  FKYFLTIVDDFSRFTWVYLMKQKSEASHLICTFFNLVRNQFNASIKVIRCDNAPEFMLSD 535
            ++YFLTIVDD+SR TWVYL++ KS+   +I TF  +V NQF  +IK +R DNAPE   + 
Sbjct: 482  YRYFLTIVDDYSRATWVYLLRNKSDVLTVIPTFVTMVENQFETTIKGVRSDNAPELNFTQ 541

Query: 536  FCKQNGIEIQHSCVETPQQNGRVERKHQHLLNVARSLLFQSHVPIDYWSDCVLTSTYLIN 715
            F    GI   HSC ETPQQN  VERKHQH+LNVARSL FQSH+PI YW DC+LT+ YLIN
Sbjct: 542  FYHSKGIVPYHSCPETPQQNSVVERKHQHILNVARSLFFQSHIPISYWGDCILTAVYLIN 601

Query: 716  RTPSPLLGHKTPFQLLFNKTPNYSHLRVFGCLAYGSTLDRTRTKFSPRAIRSVFLGYPAG 895
            R P+P+L  K PF++L    P Y H++VFGCL Y ST  + R KFSPRA    F+GYP+G
Sbjct: 602  RLPAPILEDKCPFEVLTKTVPTYDHIKVFGCLCYASTSPKDRHKFSPRAKACAFIGYPSG 661

Query: 896  YKGYKLLDLTTNKIYISRNVSFHENMFPF------REEATHEASI----PHSQIFSDQIL 1045
            +KGYKLLDL T+ I +SR+V FHE +FPF      +EE      +    P  +  SD + 
Sbjct: 662  FKGYKLLDLETHSIIVSRHVVFHEELFPFLGSDLSQEEQNFFPDLNPTPPMQRQSSDHVN 721

Query: 1046 PISPDPNKSSFPQASLS-----PATR-SGRVIKSPSYLQDYVC-----STVYPLSKFLTY 1192
            P     +    P A+ +     P+ + S R  K P+YLQDY C     ST + + KFL+Y
Sbjct: 722  PSDSSSSVEILPSANPTNNVPEPSVQTSHRKAKKPAYLQDYYCHSVVSSTPHEIRKFLSY 781

Query: 1193 DRLXXXXXXXXXXXXXXTEPQSYTQAAHIPEWQQAMLVELKALEANNTWELTRLPAGKKS 1372
            DR+               EP +YT+A  +  W+ AM  E   LE  +TWE+  LPA K+ 
Sbjct: 782  DRINDPYLTFLACLDKTKEPSNYTEAEKLQVWRDAMGAEFDFLEGTHTWEVCSLPADKRC 841

Query: 1373 IGCKWVYKVKYHADGTIERYKARLVAKGYTQHEGIDYLDTFSPXXXXXXXXXXXXXXXXX 1552
            IGC+W++K+KY++DG++ERYKARLVA+GYTQ EGIDY +TFSP                 
Sbjct: 842  IGCRWIFKIKYNSDGSVERYKARLVAQGYTQKEGIDYNETFSPVAKLNSVKLLLGVAARF 901

Query: 1553 GWILIQLDVNNAFLHGELDQEIYMDLPPGFQRQGESSVPPGTV 1681
               L QLD++NAFL+G+LD+EIYM LP G+  +   S+PP  V
Sbjct: 902  KLSLTQLDISNAFLNGDLDEEIYMRLPQGYASRQGDSLPPNAV 944


>gb|AAG10817.1|AC011808_5 Putative retroelement polyprotein [Arabidopsis thaliana]
          Length = 1413

 Score =  489 bits (1260), Expect = e-155
 Identities = 244/496 (49%), Positives = 322/496 (64%), Gaps = 10/496 (2%)
 Frame = +2

Query: 224  HCNVCPLAKQKKLPFSISTSAASKSFALIHCDVWGPFTPVSIEGFKYFLTIVDDFSRFTW 403
            HC++C  AKQKKL +    +     F L+H DVWGPF+  + EG+ YFLTIVDD +R TW
Sbjct: 565  HCDICQRAKQKKLTYPSRHNICLAPFDLLHIDVWGPFSEPTQEGYHYFLTIVDDHTRVTW 624

Query: 404  VYLMKQKSEASHLICTFFNLVRNQFNASIKVIRCDNAPEFMLSDFCKQNGIEIQHSCVET 583
            VYLMK KS+   +   F  +V  Q++  +K +R DNAPE    +  ++ GI   HSC ET
Sbjct: 625  VYLMKYKSDVLTIFPDFITMVETQYDTKVKAVRSDNAPELKFEELYRRKGIVAYHSCPET 684

Query: 584  PQQNGRVERKHQHLLNVARSLLFQSHVPIDYWSDCVLTSTYLINRTPSPLLGHKTPFQLL 763
            P+QN  VERKHQH+LNVAR+LLFQS +P+ YW DC+LT+ ++INRTPSP++ +KT F++L
Sbjct: 685  PEQNSVVERKHQHILNVARALLFQSQIPLSYWGDCILTAVFIINRTPSPVISNKTLFEML 744

Query: 764  FNKTPNYSHLRVFGCLAYGSTLDRTRTKFSPRAIRSVFLGYPAGYKGYKLLDLTTNKIYI 943
              K P+Y+HL+ FGCL Y ST  + R KF  RA    FLGYP+GYKGYKLLDL ++ I+I
Sbjct: 745  TKKVPDYTHLKSFGCLCYASTSPKQRHKFEDRARTCAFLGYPSGYKGYKLLDLESHTIFI 804

Query: 944  SRNVSFHENMFPFR-EEATHEAS---IPHSQIFSDQILPISPDPNKSSFPQASLSPATR- 1108
            SRNV F+E++FPF+ + A +E S    PH  +  +   P  P P + +   AS  PA + 
Sbjct: 805  SRNVVFYEDLFPFKTKPAENEESSVFFPHIYVDRNDSHPSQPLPVQET--SASNVPAEKQ 862

Query: 1109 SGRVIKSPSYLQDYVC-----STVYPLSKFLTYDRLXXXXXXXXXXXXXXTEPQSYTQAA 1273
            + RV + P+YL+DY C     ST +P+S+ L+Y  L               EP +Y QA 
Sbjct: 863  NSRVSRPPAYLKDYHCNSVTSSTDHPISEVLSYSSLSDPYMIFINAVNKIPEPHTYAQAR 922

Query: 1274 HIPEWQQAMLVELKALEANNTWELTRLPAGKKSIGCKWVYKVKYHADGTIERYKARLVAK 1453
             I EW  AM +E+ ALE N TW +  LP GKK++GCKWVYK+K +ADG++ERYKARLVAK
Sbjct: 923  QIKEWCDAMGMEITALEDNGTWVVCSLPVGKKAVGCKWVYKIKLNADGSLERYKARLVAK 982

Query: 1454 GYTQHEGIDYLDTFSPXXXXXXXXXXXXXXXXXGWILIQLDVNNAFLHGELDQEIYMDLP 1633
            GYTQ EG+DY+DTFSP                 GW L QLD++NAFL+G LD+EIYM LP
Sbjct: 983  GYTQTEGLDYVDTFSPVAKLTTVKLLIAVAAAKGWSLSQLDISNAFLNGSLDEEIYMTLP 1042

Query: 1634 PGFQRQGESSVPPGTV 1681
            PG+  +   S PP  V
Sbjct: 1043 PGYSPRQGDSFPPNAV 1058


>gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1454

 Score =  489 bits (1259), Expect = e-155
 Identities = 253/571 (44%), Positives = 334/571 (58%), Gaps = 11/571 (1%)
 Frame = +2

Query: 2    DLSRGKMIGMGRRKDKLYMLDCKXXXXXXXXXXXXXXXXXXLFHLWHARLGXXXXXXXXX 181
            DL +G+M+G GRR   LY+LD                       +WH RLG         
Sbjct: 521  DLIKGRMLGQGRRVANLYLLDVGDQSISVNAVVD--------ISMWHRRLGHASLQRLDA 572

Query: 182  XXXXXXXXX--NKIDNHCNVCPLAKQKKLPFSISTSAASKSFALIHCDVWGPFTPVSIEG 355
                       NK  + C+VC LAKQ+KL F  S     + F L+H DVWGPF+  ++EG
Sbjct: 573  ISDSLGTTRHKNKGSDFCHVCHLAKQRKLSFPTSNKVCKEIFDLLHIDVWGPFSVETVEG 632

Query: 356  FKYFLTIVDDFSRFTWVYLMKQKSEASHLICTFFNLVRNQFNASIKVIRCDNAPEFMLSD 535
            +KYFLTIVDD SR TW+YL+K KSE   +   F   V NQ+   +K +R DNAPE   + 
Sbjct: 633  YKYFLTIVDDHSRATWMYLLKTKSEVLTVFPAFIQQVENQYKVKVKAVRSDNAPELKFTS 692

Query: 536  FCKQNGIEIQHSCVETPQQNGRVERKHQHLLNVARSLLFQSHVPIDYWSDCVLTSTYLIN 715
            F  + GI   HSC ETP+QN  VERKHQH+LNVAR+L+FQS VP+  W DCVLT+ +LIN
Sbjct: 693  FYAEKGIVSFHSCPETPEQNSVVERKHQHILNVARALMFQSQVPLSLWGDCVLTAVFLIN 752

Query: 716  RTPSPLLGHKTPFQLLFNKTPNYSHLRVFGCLAYGSTLDRTRTKFSPRAIRSVFLGYPAG 895
            RTPS LL +KTP+++L    P Y  LR FGCL Y ST  + R KF PR+   +FLGYP+G
Sbjct: 753  RTPSQLLMNKTPYEILTGTAPVYEQLRTFGCLCYSSTSPKQRHKFQPRSRACLFLGYPSG 812

Query: 896  YKGYKLLDLTTNKIYISRNVSFHENMFPFREEATHEASI----PHSQIFSDQILPISPDP 1063
            YKGYKL+DL +N ++ISRNV FHE +FP  +    E+S+    P   + S  I   +  P
Sbjct: 813  YKGYKLMDLESNTVFISRNVQFHEEVFPLAKNPGSESSLKLFTPMVPVSSGIISDTTHSP 872

Query: 1064 NKSSFPQASLSPATRSGRVIKSPSYLQDYVCSTV-----YPLSKFLTYDRLXXXXXXXXX 1228
            +      + L P   S RV K P++L DY C+T+     YP+S  ++Y ++         
Sbjct: 873  SSLPSQISDLPPQISSQRVRKPPAHLNDYHCNTMQSDHKYPISSTISYSKISPSHMCYIN 932

Query: 1229 XXXXXTEPQSYTQAAHIPEWQQAMLVELKALEANNTWELTRLPAGKKSIGCKWVYKVKYH 1408
                   P +Y +A    EW +A+  E+ A+E  NTWE+T LP GKK++GCKWV+ +K+ 
Sbjct: 933  NITKIPIPTNYAEAQDTKEWCEAVDAEIGAMEKTNTWEITTLPKGKKAVGCKWVFTLKFL 992

Query: 1409 ADGTIERYKARLVAKGYTQHEGIDYLDTFSPXXXXXXXXXXXXXXXXXGWILIQLDVNNA 1588
            ADG +ERYKARLVAKGYTQ EG+DY DTFSP                  W L QLDV+NA
Sbjct: 993  ADGNLERYKARLVAKGYTQKEGLDYTDTFSPVAKMTTIKLLLKVSASKKWFLKQLDVSNA 1052

Query: 1589 FLHGELDQEIYMDLPPGFQRQGESSVPPGTV 1681
            FL+GEL++EI+M +P G+  +    +P   V
Sbjct: 1053 FLNGELEEEIFMKIPEGYAERKGIVLPSNVV 1083


>gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1461

 Score =  489 bits (1259), Expect = e-155
 Identities = 253/569 (44%), Positives = 347/569 (60%), Gaps = 9/569 (1%)
 Frame = +2

Query: 2    DLSRGKMIGMGRRKDKLYMLDCKXXXXXXXXXXXXXXXXXXLFHLWHARLGXXXXXXXXX 181
            DL++G  +G G+R   LY+LD +                     +WH RLG         
Sbjct: 532  DLTKGLTLGEGKRIGNLYVLDTQSPAISVNAVVDVS--------VWHKRLGHPSFSRLDS 583

Query: 182  XXXXXXXXX--NKIDNHCNVCPLAKQKKLPFSISTSAASKSFALIHCDVWGPFTPVSIEG 355
                       NK   +C+VC LAKQKKL F  + +  + +F L+H DVWGPF+  ++EG
Sbjct: 584  LSEVLGTTRHKNKKSAYCHVCHLAKQKKLSFPSANNICNSTFELLHIDVWGPFSVETVEG 643

Query: 356  FKYFLTIVDDFSRFTWVYLMKQKSEASHLICTFFNLVRNQFNASIKVIRCDNAPEFMLSD 535
            +KYFLTIVDD SR TW+YL+K KS+   +   F +LV NQ++  +K +R DNA E   ++
Sbjct: 644  YKYFLTIVDDHSRATWIYLLKSKSDVLTVFPAFIDLVENQYDTRVKSVRSDNAKELAFTE 703

Query: 536  FCKQNGIEIQHSCVETPQQNGRVERKHQHLLNVARSLLFQSHVPIDYWSDCVLTSTYLIN 715
            F K  GI   HSC ETP+QN  VERKHQH+LNVAR+L+FQS++ + YW DCVLT+ +LIN
Sbjct: 704  FYKAKGIVSFHSCPETPEQNSVVERKHQHILNVARALMFQSNMSLPYWGDCVLTAVFLIN 763

Query: 716  RTPSPLLGHKTPFQLLFNKTPNYSHLRVFGCLAYGSTLDRTRTKFSPRAIRSVFLGYPAG 895
            RTPS LL +KTPF++L  K P+YS L+ FGCL Y ST  + R KF PR+   VFLGYP G
Sbjct: 764  RTPSALLSNKTPFEVLTGKLPDYSQLKTFGCLCYSSTSSKQRHKFLPRSRACVFLGYPFG 823

Query: 896  YKGYKLLDLTTNKIYISRNVSFHENMFPFREEATHEASIPHSQIFSDQILPISPDPNKSS 1075
            +KGYKLLDL +N ++ISRNV FHE +FP    ++ +++   S +F+      S +   S 
Sbjct: 824  FKGYKLLDLESNVVHISRNVEFHEELFPL--ASSQQSATTASDVFTPMDPLSSGNSITSH 881

Query: 1076 FPQASLSPATR--SGRVIKSPSYLQDYVCSTV-----YPLSKFLTYDRLXXXXXXXXXXX 1234
             P   +SP+T+    R+ K P++LQDY C  V     +P+S  L+Y ++           
Sbjct: 882  LPSPQISPSTQISKRRITKFPAHLQDYHCYFVNKDDSHPISSSLSYSQISPSHMLYINNI 941

Query: 1235 XXXTEPQSYTQAAHIPEWQQAMLVELKALEANNTWELTRLPAGKKSIGCKWVYKVKYHAD 1414
                 PQSY +A    EW  A+  E+ A+E  +TWE+T LP GKK++GCKWV+ VK+HAD
Sbjct: 942  SKIPIPQSYHEAKDSKEWCGAIDQEIGAMERTDTWEITSLPPGKKAVGCKWVFTVKFHAD 1001

Query: 1415 GTIERYKARLVAKGYTQHEGIDYLDTFSPXXXXXXXXXXXXXXXXXGWILIQLDVNNAFL 1594
            G++ER+KAR+VAKGYTQ EG+DY +TFSP                  W L QLD++NAFL
Sbjct: 1002 GSLERFKARIVAKGYTQKEGLDYTETFSPVAKMATVKLLLKVSASKKWYLNQLDISNAFL 1061

Query: 1595 HGELDQEIYMDLPPGFQRQGESSVPPGTV 1681
            +G+L++ IYM LP G+     +S+PP  V
Sbjct: 1062 NGDLEETIYMKLPDGYADIKGTSLPPNVV 1090


>emb|CAN65820.1| hypothetical protein VITISV_042324 [Vitis vinifera]
          Length = 1262

 Score =  481 bits (1238), Expect = e-153
 Identities = 248/553 (44%), Positives = 327/553 (59%), Gaps = 42/553 (7%)
 Frame = +2

Query: 134  LWHARLGXXXXXXXXXXXXXXXXXXNKIDNHCNVCPLAKQKKLPFSISTSAASKSFALIH 313
            LWH RLG                     +  C +CPLAKQKKLPF IS S ++K+F L+H
Sbjct: 508  LWHFRLGHIPNAKIQLINSSDSSXKXIHNKVCXICPLAKQKKLPFPISNSQSNKAFQLVH 567

Query: 314  CDVWGPFTPVSIEGFKYFLTIVDDFSRFTWVYLMKQKSEASHLICTFFNLVRNQFNASIK 493
             ++WGPF+  S   + +FLT VDDF+RFTW++LMK K+E   ++  F   V   FN +I+
Sbjct: 568  XBIWGPFSIPSYSXYXFFLTXVDDFTRFTWLFLMKTKTETXAILTNFLAYVHTHFNTNIQ 627

Query: 494  VIRCDNAPEFMLSDFCKQNGIEIQHSCVETPQQNGRVERKHQHLLNVARSLLFQSHVPID 673
             +  DN  EF +  F +++GI  Q SCVETP QNGRVERKHQHLLNVARSL+FQS +P+ 
Sbjct: 628  TLXSDNGQEFNMPTFYQEHGIIHQLSCVETPXQNGRVERKHQHLLNVARSLMFQSKLPLS 687

Query: 674  YWSDCVLTSTYLINRTPSPLLGHKTPFQLLFNKTPNYSHLRVFGCLAYGSTLDRTRTKFS 853
            YW+DCVLT T+LINRTPS +L ++TP+QLLF K PNY++ + FGCL + ST+   R KF 
Sbjct: 688  YWTDCVLTXTHLINRTPSSILNNQTPYQLLFQKPPNYNYFKXFGCLCFASTITNNRGKFQ 747

Query: 854  PRAIRSVFLGYPAGYKGYKLLDLTTNKIYISRNVSFHENMFPFREEATHEASI------- 1012
            PRA + +FLGYP   KGYK+LDLTT K ++SRNV FHE+ FP   +  H+  +       
Sbjct: 748  PRATKCIFLGYPPNIKGYKVLDLTTXKXFVSRNVJFHESTFPSIPDTIHKPFVFXDFPQI 807

Query: 1013 -------PHSQIFSDQILPISPDPN---KSSFPQASL------SPATRSGRVIKSPSYLQ 1144
                   P++ +        S DP    +SS P+ ++      +   RS R    P YLQ
Sbjct: 808  YESKSCKPNNSVSITSGSTNSTDPTSXIESSIPENTIHANNDANSLRRSERTKHLPKYLQ 867

Query: 1145 DYVCSTV-------------------YPLSKFLTYDRLXXXXXXXXXXXXXXTEPQSYTQ 1267
            +Y C  +                   Y +  FL+  +L               EP++Y Q
Sbjct: 868  NYYCGNMTKIDLATQAPSSCSSSGKPYYIFSFLSDSKLSSKHKAFISIISSTFEPKTYKQ 927

Query: 1268 AAHIPEWQQAMLVELKALEANNTWELTRLPAGKKSIGCKWVYKVKYHADGTIERYKARLV 1447
            A  IP W+ AM  E+KALE N TW+L  LP  K +IGCKWVY+VK+ ADG++ERYKARLV
Sbjct: 928  AVSIPHWKTAMTDEIKALEHNKTWDLAILPPNKTTIGCKWVYQVKFKADGSVERYKARLV 987

Query: 1448 AKGYTQHEGIDYLDTFSPXXXXXXXXXXXXXXXXXGWILIQLDVNNAFLHGELDQEIYMD 1627
            AKGYTQ EG+D+ DT+SP                  W L QLDVNNAFLH +L++++YM 
Sbjct: 988  AKGYTQQEGLDFFDTYSPVAKMTTVRVLLAIAATKQWYLHQLDVNNAFLHEDLNEDVYMQ 1047

Query: 1628 LPPGFQRQGESSV 1666
            LPPGF    +  V
Sbjct: 1048 LPPGFSTPNDPRV 1060


>emb|CAN63908.1| hypothetical protein VITISV_044218 [Vitis vinifera]
          Length = 1236

 Score =  478 bits (1229), Expect = e-152
 Identities = 267/596 (44%), Positives = 338/596 (56%), Gaps = 43/596 (7%)
 Frame = +2

Query: 2    DLSRGKMIGMGRRKDKLYML--------DCKXXXXXXXXXXXXXXXXXXLFHLWHARLGX 157
            DL+    IG+G ++D LY L          +                     LWH  LG 
Sbjct: 447  DLTTRTTIGLGEQRDGLYYLVALASKKPKTQTPSAAATSCRSPSSQVTSSTALWHRCLGH 506

Query: 158  XXXXXXXXXXXXXXXXXNKIDNHCNVCPLAKQKKLPFSISTSAASKSFALIHCDVWGPFT 337
                              + +N C+VC LAKQ++LPFS+S+ ++ + F LIHCD+WGP+ 
Sbjct: 507  LSSSRLDFMAKHLLNFPFQSNNACDVCALAKQRRLPFSVSSISSVRPFELIHCDIWGPYK 566

Query: 338  PVSIEGFKYFLTIVDDFSRFTWVYLMKQKSEASHLICTFFNLVRNQFNASIKVIRCDNAP 517
              S+   KYFLTIVDD+SRFTWV+ M  KSE  HL+  FF+ V+ QF+ SI  IR DN  
Sbjct: 567  IASLSSAKYFLTIVDDYSRFTWVFFMHHKSETQHLLVNFFSFVQTQFHVSIANIRVDNGG 626

Query: 518  EFM-LSDFCKQNGIEIQHSCVETPQQNGRVERKHQHLLNVARSLLFQSHVPIDYWSDCVL 694
            EF  + +F KQ G   QHSCV TPQQNG VERKH H+L  AR+  FQ+H+P+ +W++CV 
Sbjct: 627  EFFSMREFFKQKGTTYQHSCVYTPQQNGVVERKHCHILESARAFHFQAHLPLPFWAECVS 686

Query: 695  TSTYLINRTPSPLLGHKTPFQLLFNKTPNYSHLRVFGCLAYGSTLDRTRTKFSPRAIRSV 874
            T  ++INR P+PLL  +TPF+ L+ K P+YSH+RVFGCLAY + +     KF+PRA R +
Sbjct: 687  TVVHIINRLPTPLLSRQTPFERLYGKLPSYSHIRVFGCLAYATNV-HIPHKFAPRAKRCI 745

Query: 875  FLGYPAGYKGYKLLDLTTNKIYISRNVSFHENMFPFREEATHEASIPHSQIFSDQILPIS 1054
            FLGYP G K YKL DL T++++ SR+V FHE +FP+        SIP     SD ++P+S
Sbjct: 746  FLGYPVGQKAYKLYDLDTHQMFTSRDVVFHETIFPYE-------SIPSPSSNSDPVIPLS 798

Query: 1055 -------------PD----------PNKSSFPQASLSP-----ATRSGRVIKSPSYLQDY 1150
                         P+          PN  S   +  SP       RS R    P  L+DY
Sbjct: 799  ISDLSPPVQQPSPPEPISPIQQPSLPNSVSTQPSPTSPPPEPILRRSQRPHHPPMALRDY 858

Query: 1151 VCSTVY------PLSKFLTYDRLXXXXXXXXXXXXXXTEPQSYTQAAHIPEWQQAMLVEL 1312
            VC+ V       PLS     D                 EP SY +AA    WQ+AM  EL
Sbjct: 859  VCNQVTFPNHLPPLSSSPQKD----------------IEPTSYAEAASHSHWQEAMQSEL 902

Query: 1313 KALEANNTWELTRLPAGKKSIGCKWVYKVKYHADGTIERYKARLVAKGYTQHEGIDYLDT 1492
             ALEAN+TW LT LP GKK IGC+WVYK+K H+DGTIER+KARLVAKGYTQ EGIDY DT
Sbjct: 903  AALEANHTWSLTSLPPGKKPIGCRWVYKIKRHSDGTIERFKARLVAKGYTQLEGIDYHDT 962

Query: 1493 FSPXXXXXXXXXXXXXXXXXGWILIQLDVNNAFLHGELDQEIYMDLPPGFQRQGES 1660
            FSP                  W L QLD NNAFLHG+L +EIYM  PPG +RQGE+
Sbjct: 963  FSPTAKMIIVRCLLALAAAQNWSLHQLDANNAFLHGDLHEEIYMSPPPGIRRQGEN 1018


>gb|KYP69518.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 731

 Score =  462 bits (1190), Expect = e-152
 Identities = 236/542 (43%), Positives = 314/542 (57%), Gaps = 28/542 (5%)
 Frame = +2

Query: 128  FHLWHARLGXXXXXXXXXXXXXXXXXXNKIDNHCNVCPLAKQKKLPFSISTSAASKSFAL 307
            +  WH RLG                       HC+ C +AKQ +LPF      +   F L
Sbjct: 141  YETWHKRLGHIPISVYKLIANKIKLSSIDSTYHCSTCNIAKQNRLPFPNPNKFSPSCFDL 200

Query: 308  IHCDVWGPFTPVSIEGFKYFLTIVDDFSRFTWVYLMKQKSEASHLICTFFNLVRNQFNAS 487
            IH D+WGPF   + +GF+YFLT+VDD SRFTW+Y+++ KS+    I   F  V NQF   
Sbjct: 201  IHADIWGPFKQPTYDGFRYFLTLVDDKSRFTWIYMLQNKSDCIKNIPQIFAYVENQFQTK 260

Query: 488  IKVIRCDNAPEFMLSDFCKQNGIEIQHSCVETPQQNGRVERKHQHLLNVARSLLFQSHVP 667
            IK  R DN  E    DF  + G+  Q  CVE P+QN  VERKH H+LN+AR+L+FQS+VP
Sbjct: 261  IKSFRSDNVRELHFKDFFLEKGVLHQFLCVERPKQNSVVERKHLHILNIARTLMFQSNVP 320

Query: 668  IDYWSDCVLTSTYLINRTPSPLLGHKTPFQLLFNKTPNYSHLRVFGCLAYGSTLDRTRTK 847
            I  W D V T  +++NRTPSP+L H +P+++L+NK PNYS  R FG L Y STL   R K
Sbjct: 321  IKIWGDYVKTVVFIMNRTPSPILNHISPYEILYNKVPNYSDFRTFGTLCYASTLLSGRHK 380

Query: 848  FSPRAIRSVFLGYPAGYKGYKLLDLTTNKIYISRNVSFHENMFPFREEATHEASIPHSQI 1027
            FSPRAI +VF+GYP GYKGYKL DLTT++ +IS++V F+E++FPF+   + +       +
Sbjct: 381  FSPRAIAAVFIGYPHGYKGYKLFDLTTHQTFISKDVKFYEHIFPFQNSNSSDRG---HGV 437

Query: 1028 FSDQIL-------------PISPDPNKSSFPQASLSPAT--------RSGRVIKSPSYLQ 1144
            F+DQI              PI P   ++ F    LSP          RS R +  P YL 
Sbjct: 438  FNDQITPNLNHPATFDDSDPIQPTHTQNQFTIQQLSPPNEPDQAPIRRSNRAVNPPGYLS 497

Query: 1145 DYVC-------STVYPLSKFLTYDRLXXXXXXXXXXXXXXTEPQSYTQAAHIPEWQQAML 1303
            DY C        T+YP+ KF+ Y +L               EPQ+Y QA   P W+QA+ 
Sbjct: 498  DYHCYNVTTNTQTLYPIQKFIDYSKLSKTHNHYICQIFANHEPQTYKQAIKFPHWKQAIE 557

Query: 1304 VELKALEANNTWELTRLPAGKKSIGCKWVYKVKYHADGTIERYKARLVAKGYTQHEGIDY 1483
             EL A+E NNTW +T LP  KK I CKW++K+K ++DGTI ++KARLVA+G+TQ  G+D+
Sbjct: 558  DELTAMEINNTWSITHLPNDKKQISCKWLFKLKLNSDGTIAKHKARLVARGFTQQHGLDF 617

Query: 1484 LDTFSPXXXXXXXXXXXXXXXXXGWILIQLDVNNAFLHGELDQEIYMDLPPGFQRQGESS 1663
             +TFSP                  W L QLDVNNAFL+G LD+EI+M +PPG+     S+
Sbjct: 618  QETFSPVAKITTLRLLLSLTASQHWNLAQLDVNNAFLNGNLDEEIFMQIPPGY---SHST 674

Query: 1664 VP 1669
            +P
Sbjct: 675  IP 676


>dbj|BAB10503.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1475

 Score =  478 bits (1229), Expect = e-150
 Identities = 246/527 (46%), Positives = 321/527 (60%), Gaps = 11/527 (2%)
 Frame = +2

Query: 134  LWHARLGXXXXXXXXXXXXXXXXXXNKIDN--HCNVCPLAKQKKLPFSISTSAASKSFAL 307
            LWH+RLG                     ++  HC++C  AKQK L F    + +   F L
Sbjct: 585  LWHSRLGHPSYEKNDVLHDVLGLPKRNKEDLVHCSICQKAKQKHLSFPSKNNMSENKFDL 644

Query: 308  IHCDVWGPFTPVSIEGFKYFLTIVDDFSRFTWVYLMKQKSEASHLICTFFNLVRNQFNAS 487
            IH D WGPF   + EG+KYFLTIVDD+SR TWVYLMK K++   +   F  +V  Q+   
Sbjct: 645  IHIDTWGPFATPTTEGYKYFLTIVDDYSRATWVYLMKAKNDVLQIFPDFLKMVETQYGTL 704

Query: 488  IKVIRCDNAPEFMLSDFCKQNGIEIQHSCVETPQQNGRVERKHQHLLNVARSLLFQSHVP 667
            +K +R DNAPE       +  GI   HSC ETPQQN  VERKHQH+LNVAR+L+F++++P
Sbjct: 705  VKAVRSDNAPELRFEALYQAKGIISYHSCPETPQQNSVVERKHQHILNVARALMFEANMP 764

Query: 668  IDYWSDCVLTSTYLINRTPSPLLGHKTPFQLLFNKTPNYSHLRVFGCLAYGSTLDRTRTK 847
            +++W DC+L++ +LINR P+PLL +K+PF+LL  K P+Y+ L+VFGCL Y ST  + R K
Sbjct: 765  LEFWGDCILSAVFLINRLPTPLLSNKSPFELLHLKVPDYTSLKVFGCLCYESTSPQQRHK 824

Query: 848  FSPRAIRSVFLGYPAGYKGYKLLDLTTNKIYISRNVSFHENMFPFREEATHEASIPHSQI 1027
            F+PRA   VFLGYP+GYKGYKLLDL TN I+ISR+V F+E +FPF    T +  IP    
Sbjct: 825  FAPRARACVFLGYPSGYKGYKLLDLETNTIHISRHVVFYETVFPF----TDKTIIPRDVF 880

Query: 1028 FSDQILPISPDPNKSSFPQASLS-PATRSGRVIKSPSYLQDYVCSTV--------YPLSK 1180
              D + P+    N  + P  S S P   S R  + P YLQDY C+ V        YPL+ 
Sbjct: 881  --DLVDPV--HENIENPPSTSESAPKVSSKRESRPPGYLQDYFCNAVPDVTKDVRYPLNA 936

Query: 1181 FLTYDRLXXXXXXXXXXXXXXTEPQSYTQAAHIPEWQQAMLVELKALEANNTWELTRLPA 1360
            ++ Y +L               EP +Y QA  I EW  AM +E+ ALE+ NTW +  LP 
Sbjct: 937  YINYTQLSEEFTAYICAVNKYPEPCTYAQAKKIKEWLDAMEIEIDALESTNTWSVCSLPQ 996

Query: 1361 GKKSIGCKWVYKVKYHADGTIERYKARLVAKGYTQHEGIDYLDTFSPXXXXXXXXXXXXX 1540
            GKK IGCKWV+KVK +ADG++ER+KARLVAKGYTQ EG+DY DTFSP             
Sbjct: 997  GKKPIGCKWVFKVKLNADGSLERFKARLVAKGYTQREGLDYYDTFSPVAKMTTVKTLLSV 1056

Query: 1541 XXXXGWILIQLDVNNAFLHGELDQEIYMDLPPGFQRQGESSVPPGTV 1681
                 W L QLD++NAFL+G+L +EIYM LPPG+  +    +P   V
Sbjct: 1057 AAIKEWSLHQLDISNAFLNGDLKEEIYMTLPPGYSMKQGGVLPQNPV 1103


>gb|KYP65734.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1013

 Score =  453 bits (1166), Expect = e-145
 Identities = 247/548 (45%), Positives = 313/548 (57%), Gaps = 35/548 (6%)
 Frame = +2

Query: 134  LWHARLGXXXXXXXXXXXXXXXXXXNKI-DNHCNVCPLAKQKKLPFSISTSAASKSFALI 310
            LWH RLG                   +  D  C++C  AKQK+LP  IS + ++    L+
Sbjct: 88   LWHHRLGHLSNSTHRIIASQFPIVSYQHHDVPCDICHFAKQKRLPHFISNTKSASVIELL 147

Query: 311  HCDVWGPFTPVSIEGFKYFLTIVDDFSRFTWVYLMKQKSEASHLICTFFNLVRNQFNASI 490
            H D+WGP++  S+ G KYFLT+VDDFSRFTW+ +MK KSE    +  F + +  QF   +
Sbjct: 148  HADIWGPYSIPSVFGHKYFLTLVDDFSRFTWIVMMKSKSETRQHLTNFISYIETQFQTKL 207

Query: 491  KVIRCDNAPEFMLSDFCKQNGIEIQHSCVETPQQNGRVERKHQHLLNVARSLLFQSHVPI 670
            K +R DN  EF++ D     GI  Q SCVETPQQNG VERKHQH+LN AR+L FQ+ +P 
Sbjct: 208  KCLRTDNGSEFLMHDLFLSKGIIHQGSCVETPQQNGVVERKHQHILNTARALYFQASLPK 267

Query: 671  DYWSDCVLTSTYLINRTPSPLLGHKTPFQLLFNKTPNYSHLRVFGCLAYGSTLDRTRTKF 850
            ++W+  +  + +LINR PSPLL +KTP+Q L  + P   HLR FGCLAY STL   RTKF
Sbjct: 268  NFWNFAIQHAVHLINRIPSPLLDNKTPYQALHQRPPILVHLRSFGCLAYASTLQAHRTKF 327

Query: 851  SPRAIRSVFLGYPAGYKGYKLLDLTTNKIYISRNVSFHENMFPFREEATHEASIPHSQIF 1030
             PRA +SV LGY  G KGY L DL +++ ++SRNV FHE  FPF   +    + P     
Sbjct: 328  QPRAKKSVLLGYKEGVKGYLLYDLHSHEFFMSRNVFFHEFTFPFHTPSQTSLTQPSPTPI 387

Query: 1031 SDQILPIS----------PDPNKSSF-----PQASLSPA----TRSGRVIKSPSYLQDYV 1153
            + Q  PIS          P P  S+      P   LSPA      S R+ + PSYL+DY 
Sbjct: 388  TIQ-TPISSPYDLDNHVPPSPTSSTSIPPEQPHQPLSPAPAPSRHSTRMRQPPSYLKDYH 446

Query: 1154 CSTVYP---------------LSKFLTYDRLXXXXXXXXXXXXXXTEPQSYTQAAHIPEW 1288
            CS + P               +S  LTYD                 EP +YTQA+    W
Sbjct: 447  CSLLAPTGRINSFSGISTPHSISSTLTYDFCSPSYKQFCLSVSTNFEPHTYTQASKYDCW 506

Query: 1289 QQAMLVELKALEANNTWELTRLPAGKKSIGCKWVYKVKYHADGTIERYKARLVAKGYTQH 1468
              AM  EL AL+ N TW +  LP+GK+ IGCKWVYK+KY +DG+IERYKARLVAKGY+Q 
Sbjct: 507  IMAMKTELAALDMNQTWSIVDLPSGKRPIGCKWVYKIKYLSDGSIERYKARLVAKGYSQT 566

Query: 1469 EGIDYLDTFSPXXXXXXXXXXXXXXXXXGWILIQLDVNNAFLHGELDQEIYMDLPPGFQR 1648
            EG+DYLDT+SP                 GW L QLDVNNAFLHG+L +E+YM LPPG   
Sbjct: 567  EGLDYLDTYSPVAKLTTVRVLLALTAIKGWFLEQLDVNNAFLHGDLHEEVYMTLPPGLSV 626

Query: 1649 QGESSVPP 1672
               S+  P
Sbjct: 627  PSSSNTAP 634


>emb|CAN82526.1| hypothetical protein VITISV_028058 [Vitis vinifera]
          Length = 1125

 Score =  450 bits (1158), Expect = e-143
 Identities = 253/582 (43%), Positives = 324/582 (55%), Gaps = 27/582 (4%)
 Frame = +2

Query: 2    DLSRGKMIGMGRRKDKLYML--------DCKXXXXXXXXXXXXXXXXXXLFHLWHARLGX 157
            DL+    IG+G ++D LY L          +                     LWH RLG 
Sbjct: 200  DLTTRTTIGLGEQRDGLYYLVALASEKPKTQTPSAATTSCRSPSSQVTSSTALWHRRLGH 259

Query: 158  XXXXXXXXXXXXXXXXXNKIDNHCNVCPLAKQKKLPFSISTSAASKSFALIHCDVWGPFT 337
                              + +N C+VC LAKQ++LPFS+S+ ++ + F LIHCD+WGP+ 
Sbjct: 260  LSSSRLDFMAKHLLNFHFQSNNACDVCALAKQRQLPFSVSSISSVRPFELIHCDIWGPYK 319

Query: 338  PVSIEGFKYFLTIVDDFSRFTWVYLMKQKSEASHLICTFFNLVRNQFNASIKVIRCDNAP 517
              S+ G KYFLTIVDD+SRFT V+ M  KSE  HL+  FF+ V+ QF+ SI  IR DN  
Sbjct: 320  IASLSGAKYFLTIVDDYSRFTXVFFMHHKSETQHLLVNFFSFVQTQFHVSIANIRVDNGG 379

Query: 518  EFM-LSDFCKQNGIEIQHSCVETPQQNGRVERKHQHLLNVARSLLFQSHVPIDYWSDCVL 694
            EF    +F KQ G   QHSCV TPQQNG VERKH+H+L  AR+  FQ+H+P+ +W++CV 
Sbjct: 380  EFFSXREFFKQKGTTYQHSCVYTPQQNGVVERKHRHILESARAFXFQAHLPLPFWAECVS 439

Query: 695  TSTYLINRTPSPLLGHKTPFQLLFNKTPNYSHLRVFGCLAYGSTLDRTRTKFSPRAIRSV 874
            T+ ++INR P+PLL  +TPF+ L+ K P+YSH+RVFGCLAY + +     KF+PRA R +
Sbjct: 440  TAVHIINRLPTPLLSRQTPFERLYGKLPSYSHIRVFGCLAYATNV-HVPHKFAPRAKRCI 498

Query: 875  FLGYPAGYKGYKLLDLTTNKIYISRNVSFHENMFPFREEATHEASIPHSQIFSDQILPIS 1054
            FLGYP G K YKL DL T++++ SR+V FHE +FP+        SIP     SD   P  
Sbjct: 499  FLGYPVGQKAYKLYDLDTHQMFTSRDVVFHETIFPYE-------SIPSPSSNSD---PFL 548

Query: 1055 PDPNKSSFPQASLSPATRSGRVIKSPSYLQDYVCSTV------------------YPLSK 1180
               + +S P   +    RS R    P  L+DYVC+ V                  YPL  
Sbjct: 549  LSHHLASPPPEPI--LRRSQRPHHPPMALRDYVCNQVTSPNHLPPLSSSPQKGTRYPLCN 606

Query: 1181 FLTYDRLXXXXXXXXXXXXXXTEPQSYTQAAHIPEWQQAMLVELKALEANNTWELTRLPA 1360
            F++Y R                EP SY +A     WQ+AM  EL  LEAN+TW LT LP 
Sbjct: 607  FVSYHRYSPQHRSFTAAVSQDIEPTSYAEATSHSHWQEAMQSELATLEANHTWSLTSLPP 666

Query: 1361 GKKSIGCKWVYKVKYHADGTIERYKARLVAKGYTQHEGIDYLDTFSPXXXXXXXXXXXXX 1540
            GKK IGC+WVYK+K H+DGTIER+KARLVAKGYTQ EGIDY DTFSP             
Sbjct: 667  GKKPIGCRWVYKIKXHSDGTIERFKARLVAKGYTQLEGIDYHDTFSPTAKMIXVRCLLAL 726

Query: 1541 XXXXGWILIQLDVNNAFLHGELDQEIYMDLPPGFQRQGESSV 1666
                 W L QLD              +M  PP  +RQGE+ V
Sbjct: 727  AAAQNWSLHQLDK-------------FMSPPPSLRRQGENLV 755


>emb|CAN74229.1| hypothetical protein VITISV_000584 [Vitis vinifera]
          Length = 1039

 Score =  446 bits (1148), Expect = e-142
 Identities = 241/551 (43%), Positives = 317/551 (57%), Gaps = 42/551 (7%)
 Frame = +2

Query: 134  LWHARLGXXXXXXXXXXXXXXXXXXNKIDNHCNVCPLAKQKKLPFSISTSAASKSFALIH 313
            LWH RLG                      + C++ PLAKQ +L F  S  ++   F LIH
Sbjct: 130  LWHQRLGHPSSGPLQVLAKVNXEIYFDSKHVCDIXPLAKQTRLSFPSSFISSHAPFDLIH 189

Query: 314  CDVWGPFTPVSIEGFKYFLTIVDDFSRFTWVYLMKQKSEASHLICTFFNLVRNQFNASIK 493
            CD+WGP    S  G +YFLTIVDD +R+TW++LM  KSE   ++ +F + V  QFN  IK
Sbjct: 190  CDIWGPHRINSHSGARYFLTIVDDHTRYTWIHLMSFKSETQGILQSFISWVETQFNRCIK 249

Query: 494  VIRCDNAPEFM-LSDFCKQNGIEIQHSCVETPQQNGRVERKHQHLLNVARSLLFQSHVPI 670
             +R DN  E   +  +    GI   HSC  TPQQNG VERKH+HLLNV R+L FQ+++P+
Sbjct: 250  TLRTDNGTEISSMKQYLDTKGINYHHSCAYTPQQNGVVERKHRHLLNVGRALRFQANLPL 309

Query: 671  DYWSDCVLTSTYLINRTPSPLLGHKTPFQLLFNKTPNYSHLRVFGCLAYGSTLDRTRTKF 850
             +W + + T+ YLINR P+PLL HK+P+QLL NK P+Y HLR FGCL Y + L  T  KF
Sbjct: 310  KFWGESIQTACYLINRLPTPLLSHKSPYQLLXNKLPSYHHLRTFGCLCYATNLLPTH-KF 368

Query: 851  SPRAIRSVFLGYPAGYKGYKLLDLTTNKIYISRNVSFHENMFPFR---EEATHEASI-PH 1018
              RA R +F+GYP G KGY++ DL TNK + S +V FHE++FPF    +E  H+  + P 
Sbjct: 369  DQRARRCIFVGYPLGQKGYRVYDLETNKFFSSXDVVFHEHIFPFHTNPQEEQHDVVVLPL 428

Query: 1019 SQIFSDQILPISPDPNKSSFPQASLS---------------------PATRSGRVIKSPS 1135
             Q   + I   +  P     P   LS                     PATR    IK P+
Sbjct: 429  PQTSYEPITTETTKPQADDQPPPLLSSLESTSNERTLDLDTIVSPPPPATRRSDRIKQPN 488

Query: 1136 Y-LQDY---------------VCSTVYPLSKFLTYDRLXXXXXXXXXXXXXXTEPQSYTQ 1267
              L+++               +  T +PL+++++Y +L               EP +Y Q
Sbjct: 489  VXLRNFHLYHTAKVXSSQSSSLSGTRHPLTRYISYAQLSPKYRNFVCAITTLVEPTTYEQ 548

Query: 1268 AAHIPEWQQAMLVELKALEANNTWELTRLPAGKKSIGCKWVYKVKYHADGTIERYKARLV 1447
            A   P+WQ+AM  EL ALE N+TW LT LP+G + IGCKWVYK+KY++DGT+ERYKARLV
Sbjct: 549  AVLDPKWQEAMAAELHALEQNHTWTLTPLPSGHRPIGCKWVYKIKYNSDGTVERYKARLV 608

Query: 1448 AKGYTQHEGIDYLDTFSPXXXXXXXXXXXXXXXXXGWILIQLDVNNAFLHGELDQEIYMD 1627
            AKG+TQ EGIDY +TFSP                  W L Q+DV NAFLHG+L +E+YM 
Sbjct: 609  AKGFTQREGIDYKETFSPVAKLTTVRCLLAIAAVRHWSLHQMDVQNAFLHGDLLEEVYMQ 668

Query: 1628 LPPGFQRQGES 1660
            LPPGF RQGE+
Sbjct: 669  LPPGFXRQGET 679


>gb|KYP34293.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1376

 Score =  449 bits (1156), Expect = e-141
 Identities = 252/557 (45%), Positives = 322/557 (57%), Gaps = 46/557 (8%)
 Frame = +2

Query: 134  LWHARLGXXXXXXXXXXXXXXXXXXNKIDNHCNVCPLAKQKKLPFSISTSAASKSFALIH 313
            LWH RLG                     D  CN+C  AKQ+KL FS S S AS+ F+L+H
Sbjct: 446  LWHFRLGHLSNTRLHNMQQLYPCLTINKDFTCNICHYAKQRKLSFSSSHSTASRPFSLLH 505

Query: 314  CDVWGPFTPVS-IEGFKYFLTIVDDFSRFTWVYLMKQKSEASHLICTFFNLVRNQFNASI 490
             D+WGP++ +S I G K+F TIVDD + FTW++LM  KSE    I  F NL+ NQFN  I
Sbjct: 506  MDIWGPYSCISSIHGHKFFFTIVDDNTHFTWIFLMINKSETRMHISNFINLIENQFNTRI 565

Query: 491  KVIRCDNAPEFMLSDFCKQNGIEIQHSCVETPQQNGRVERKHQHLLNVARSLLFQSHVPI 670
            + I+ DN  EF++ +F    GI  Q +C+ETPQQNG VERKHQHLLNV  +LLF S +P 
Sbjct: 566  QTIQTDNGAEFLMQNFFNSKGIVHQTTCIETPQQNGVVERKHQHLLNVTHALLFHSKLPY 625

Query: 671  DYWSDCVLTSTYLINRTPSPLLGHKTPFQLLFNKTPNYSHLRVFGCLAYGSTLDRTRTKF 850
             +WS  +L +TYLINR  +PLL +KTPFQ L+ +T + + LRVFGCL Y ST    R K 
Sbjct: 626  CFWSYALLHATYLINRITTPLLDNKTPFQKLYGQTCDITELRVFGCLCYVSTSTANRKKL 685

Query: 851  SPRAIRSVFLGYPAGYKGYKLLDLTTNKIYISRNVSFHENMFPFREEATHEASIP----- 1015
             PRA   VFLG+    KGY   DL T  I ISRNVSF+EN FP  +  +  ++IP     
Sbjct: 686  DPRAHPCVFLGFSPTTKGYITYDLHTRAITISRNVSFYENHFPLLQSTSSTSNIPVVSPI 745

Query: 1016 ----HSQIFSDQILPISPDPNK-------------------------SSFPQASLSPATR 1108
                HS   S  ++ I PDP++                          S P  S SP  R
Sbjct: 746  SFGIHSP--SHDLISILPDPHQHNVTSPNPATTSHDSISLAPYSTTADSLPPNS-SPLRR 802

Query: 1109 SGRVIKSPSYLQDY---VCST--------VYPLSKFLTYDRLXXXXXXXXXXXXXXTEPQ 1255
            S R+   PSYLQDY   + ST        +YP+ K+++Y RL              +EP 
Sbjct: 803  STRLRNPPSYLQDYHHSLTSTSTNLHPGMLYPIEKYISYSRLSNDFQAFVSSISAVSEPH 862

Query: 1256 SYTQAAHIPEWQQAMLVELKALEANNTWELTRLPAGKKSIGCKWVYKVKYHADGTIERYK 1435
            SY +AA    W +AM  EL+AL+ N TW LT LP  K+++GC+W+YK+KY+ADG+IERYK
Sbjct: 863  SYAEAAKHDCWLKAMHAELEALKMNQTWTLTPLPPHKQAVGCRWIYKIKYNADGSIERYK 922

Query: 1436 ARLVAKGYTQHEGIDYLDTFSPXXXXXXXXXXXXXXXXXGWILIQLDVNNAFLHGELDQE 1615
            ARLVAKGYTQ EG+DYL TFSP                  W L QLDVNNAFLHG+L++E
Sbjct: 923  ARLVAKGYTQVEGLDYLATFSPVAKLTTVRLLLALAAVFDWHLKQLDVNNAFLHGDLNEE 982

Query: 1616 IYMDLPPGFQRQGESSV 1666
            +YM LP G + +  + V
Sbjct: 983  VYMTLPLGMRPEYSNQV 999