BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia27_contig00019569
         (4624 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]   613   0.0  
gb|KYP48058.1| Retrovirus-related Pol polyprotein from transposo...   577   0.0  
gb|KYP64898.1| Retrovirus-related Pol polyprotein from transposo...   590   0.0  
gb|KYP44480.1| Retrovirus-related Pol polyprotein from transposo...   570   0.0  
gb|KYP34165.1| Copia protein [Cajanus cajan]                          563   0.0  
gb|KYP50410.1| Retrovirus-related Pol polyprotein from transposo...   560   0.0  
gb|KHN36156.1| Retrovirus-related Pol polyprotein from transposo...   587   e-180
gb|KHN22040.1| Retrovirus-related Pol polyprotein from transposo...   587   e-180
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]   587   e-180
gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposo...   575   e-179
gb|KYP44486.1| Retrovirus-related Pol polyprotein from transposo...   551   e-178
gb|KYP64199.1| Retrovirus-related Pol polyprotein from transposo...   579   e-177
gb|KHN21230.1| Retrovirus-related Pol polyprotein from transposo...   579   e-177
gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposo...   575   e-176
gb|KYP46114.1| Retrovirus-related Pol polyprotein from transposo...   545   e-175
gb|KYP50571.1| Retrovirus-related Pol polyprotein from transposo...   544   e-175
gb|KYP32233.1| Retrovirus-related Pol polyprotein from transposo...   541   e-174
gb|KYP75940.1| Retrovirus-related Pol polyprotein from transposo...   570   e-174
gb|KYP47651.1| Retrovirus-related Pol polyprotein from transposo...   535   e-171
gb|KYP67039.1| Retrovirus-related Pol polyprotein from transposo...   553   e-169

>emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]
          Length = 1262

 Score =  613 bits (1582), Expect = 0.0
 Identities = 301/540 (55%), Positives = 398/540 (73%), Gaps = 1/540 (0%)
 Frame = -2

Query: 1710 QGHHMITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNAAMKKEYAALLKNQTWSL 1531
            Q HHM+TRSK G  KP  Y   L    EP++++EA+  P+W  AM +E+ AL+KN+TWSL
Sbjct: 720  QPHHMVTRSKNGIFKPXVYTVDLNVE-EPNTFQEAISHPKWKEAMDEEFRALMKNKTWSL 778

Query: 1530 FPISQLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVIKPA 1351
                 LP ++  +GC+W+FKLKRN DGSV+++KARLVAKG++Q+ G D+ ETFSPV+KP 
Sbjct: 779  V---SLPTNRTSVGCRWVFKLKRNPDGSVSRYKARLVAKGYSQVPGFDFYETFSPVVKPT 835

Query: 1350 TIKIILSLALTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSL 1171
            TI+++L++A++ SW IRQLD++NAFLNG++  E+YM+Q PGF    +  +++VCKLHK+L
Sbjct: 836  TIRVVLAIAVSQSWCIRQLDVNNAFLNGELQEEVYMDQPPGFDGKTNQEQKLVCKLHKAL 895

Query: 1170 YGLKQASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVTGSCATA 991
            YGLKQA RAW  KL   LQ FGF+ +K+D SLF R +  S +F+L YVDDI+VTGS +  
Sbjct: 896  YGLKQAPRAWFDKLKISLQQFGFSSTKSDQSLFVRFTNCSSLFVLVYVDDIVVTGSSSQE 955

Query: 990  IQTVIDDLHRVFSLKDLGNLSYFLGIQVDYTPNG-LLLTQQKYIQDLLDSAGMKGAKGLS 814
            I  +I  L  +FSLKDLG LSYFLGI+V  T +G L L+Q+KYIQDLL    M GAK L 
Sbjct: 956  IHELISRLRGLFSLKDLGELSYFLGIEVKKTADGGLHLSQKKYIQDLLKKTKMDGAKSLP 1015

Query: 813  SPMVSRPLLSKHDGNPISDASLYRKIVGSLQYATMTRPDISYSVNKVSQYMQNPLDSHWK 634
            +PM+S   LS   G+PI +   YR +VG+LQY T+TRP+I++SVNKV Q+MQ PLD+HWK
Sbjct: 1016 TPMLSGLKLSAGMGDPIDNVFEYRSVVGALQYITITRPEIAFSVNKVCQFMQKPLDTHWK 1075

Query: 633  AVKRILRYLAGTIDHGLLFTKGHLHRINTFADADWGSDLDDRRSTSGYCVYFGSNLVSWS 454
            AVKRILRYL GT D G++        +  F DADWGSD+DDRRSTSG+CV+ G +LVSWS
Sbjct: 1076 AVKRILRYLNGTTDLGIVLKPSETMNLVGFCDADWGSDVDDRRSTSGHCVFLGKSLVSWS 1135

Query: 453  AKKQAVVSRSSTEAEYRSIASATCDVFWIHSLLQEIGFQIHKPTTVWTDNLGAVSLSVNP 274
            +KKQ   SRSSTEAEYRS+AS T ++ W+ SLL E+  ++     +W DN+  VSLS NP
Sbjct: 1136 SKKQHTTSRSSTEAEYRSLASLTSEMLWLQSLLSELQTKMTMVPVIWCDNISTVSLSANP 1195

Query: 273  VFHSRTKHFELDLHFIREKVAKQQISVQHIPGSEQVADILTKPLTGQFFVRLRNKLNVVS 94
            V HSRTKH ELDL+F+REKV ++++ V H+P  +QVAD+ TKPL+ +FF +LR KL V S
Sbjct: 1196 VLHSRTKHMELDLYFVREKVMERKLVVNHVPTEDQVADVFTKPLSFRFFDKLREKLTVAS 1255



 Score =  276 bits (707), Expect = 2e-72
 Identities = 128/217 (58%), Positives = 163/217 (75%)
 Frame = -2

Query: 2709 APLKSNNGYAYYISFIDHASRYTWIYLLKNKSDTSKAFLHFKNLAENQCNTRIKAIQSDG 2530
            AP+ S+ G+ YY+SF D  SRYTW+Y LK KS T +AFL FK  AE Q   ++K  Q+D 
Sbjct: 386  APINSSYGFTYYVSFXDAYSRYTWVYXLKTKSQTREAFLMFKAQAELQFGCKLKTFQTDW 445

Query: 2529 GTEYKPLHDILAQNGIIHRISCPYTPQQNGLAERKHRHIIETALSLLAHSSVPQSYWDDA 2350
            G E++ L     QNGIIHR+SCP+T +QNG+ ERKHRHI+E  L+LLA +S+P  YW DA
Sbjct: 446  GGEFRSLKTYFEQNGIIHRLSCPHTSKQNGIIERKHRHIVELGLTLLAQASLPLKYWPDA 505

Query: 2349 VTSAVFLINRMPSKVLKYKSPYEVFTGHKPNYSFLKVFGCLCYPHLRPYNKHKLEFRSTP 2170
             ++AVFLINR+P++VLK K PYE     KPNYS LKVFGCLC+PHLRPYNKHKL+FRS+P
Sbjct: 506  FSTAVFLINRLPTEVLKQKCPYEFLFNSKPNYSQLKVFGCLCFPHLRPYNKHKLDFRSSP 565

Query: 2169 GVFIGYSLQYKGYKVLLPNKKIVITRNVVFDEDKFPF 2059
              F+GYS ++KGYK L    ++ I+R+VVFDE +FPF
Sbjct: 566  CTFLGYSSKHKGYKCLNQQGRMFISRSVVFDETRFPF 602



 Score = 83.2 bits (204), Expect = 3e-12
 Identities = 48/128 (37%), Positives = 69/128 (53%), Gaps = 17/128 (13%)
 Frame = -1

Query: 3412 QPRCQICFIPGHSAAKCFHRANLNFV-------PT-------SNNNSFYTQNQSTNHNSN 3275
            +P+CQ+C   GH+  +CF+R + NF        PT       + N +  + + + N N  
Sbjct: 180  KPQCQLCNKFGHTVHRCFYRYDPNFHGNMPANGPTPGVLGSGARNGASGSISSAGNVNLT 239

Query: 3274 DPHANR---YGSFSANVASTSQDHAQETCWFPDSGATNHLTYDLGNLNLAHDYQGTDRIQ 3104
            +  A     Y    A VA+   +  Q  CWFPDSGATNH+T+DLGNLN   +Y G  +I 
Sbjct: 240  EYDAQENQDYSEMEAMVATP--EDLQNCCWFPDSGATNHVTHDLGNLNSGAEYNGNSKIH 297

Query: 3103 IGNGSGSK 3080
            +GNG+G K
Sbjct: 298  MGNGTGLK 305


>gb|KYP48058.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 539

 Score =  577 bits (1487), Expect = 0.0
 Identities = 294/538 (54%), Positives = 386/538 (71%), Gaps = 4/538 (0%)
 Frame = -2

Query: 1698 MITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNAAMKKEYAALLKNQTWSLFPIS 1519
            M TRSK+G  KPK Y +VL    EP + K+AL+ P+W  AMK+EY+ALLKN TW+L    
Sbjct: 1    MQTRSKSGIHKPK-YPSVLLAQSEPKNVKQALKDPKWLEAMKQEYSALLKNNTWTLV--- 56

Query: 1518 QLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVIKPATIKI 1339
            QLPPD+  IGCKW+F++K NSDGSV ++KARLVAKGF Q  G D+ ETFSP+IKP TI++
Sbjct: 57   QLPPDRNAIGCKWVFRIKENSDGSVNRYKARLVAKGFLQQPGFDFNETFSPIIKPVTIRL 116

Query: 1338 ILSLALTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSLYGLK 1159
            IL+LA++N W I QLD++NAFLNG ++  +YM+Q PGF         +VCKL+K+LYGLK
Sbjct: 117  ILTLAISNHWDIHQLDVNNAFLNGSLNETVYMQQPPGFEVP---DSTLVCKLNKALYGLK 173

Query: 1158 QASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVTGSCATAIQTV 979
            QA R W  +L   L  FGF  SK D SLF  + + + +++L YVDDII+TG+     Q +
Sbjct: 174  QAPRQWFERLQYTLLQFGFKASKCDPSLFTYHMQSNIVYLLVYVDDIIITGNSFQFTQQL 233

Query: 978  IDDLHRVFSLKDLGNLSYFLGIQVDYTPNG-LLLTQQKYIQDLLDSAGMKGAKGLSSPMV 802
            ID L+ +FSLK LG L YFLGI+V +  NG +LLTQ KYI+DLL    M  A  +SSPMV
Sbjct: 234  IDQLNSIFSLKQLGKLDYFLGIEVRHLQNGSVLLTQSKYIRDLLQRTNMLEANAISSPMV 293

Query: 801  SRPLLSKHDGNPISDASLYRKIVGSLQYATMTRPDISYSVNKVSQYMQNPLDSHWKAVKR 622
            S   LSKH  + ++D++ YR +VG+LQYAT+TRP++S++VNKV Q+M +PL+SHW AVKR
Sbjct: 294  SSCKLSKHGSDTLADSTFYRSVVGALQYATITRPELSFAVNKVCQFMAHPLESHWNAVKR 353

Query: 621  ILRYLAGTIDHGLLFTKGHLHR---INTFADADWGSDLDDRRSTSGYCVYFGSNLVSWSA 451
            ILRYL GT+ +GL      +H+   +  + DADW +D DDRRSTSG  ++ G NL+SW +
Sbjct: 354  ILRYLKGTMFYGLHLQPARVHQPFSLYAYCDADWAADPDDRRSTSGAAIFLGPNLISWWS 413

Query: 450  KKQAVVSRSSTEAEYRSIASATCDVFWIHSLLQEIGFQIHKPTTVWTDNLGAVSLSVNPV 271
            +KQ VV+RSSTEAEYRS+A AT +V WI +LL E+      P T++ DN   VSL+ NPV
Sbjct: 414  RKQPVVARSSTEAEYRSLAQATSEVLWIQTLLHELRVPFSTP-TIYCDNQSTVSLAHNPV 472

Query: 270  FHSRTKHFELDLHFIREKVAKQQISVQHIPGSEQVADILTKPLTGQFFVRLRNKLNVV 97
             HSRTKH E++L F+REKV   Q++VQHIP S+Q AD LTKPL+   F+ LR+KL VV
Sbjct: 473  LHSRTKHMEINLFFVREKVLANQLTVQHIPASDQWADALTKPLSSTRFLILRDKLKVV 530


>gb|KYP64898.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1007

 Score =  590 bits (1520), Expect = 0.0
 Identities = 303/551 (54%), Positives = 384/551 (69%), Gaps = 6/551 (1%)
 Frame = -2

Query: 1704 HHMITRSKTGNLKPKTYAAVLQTN-----LEPHSYKEALRIPEWNAAMKKEYAALLKNQT 1540
            H M TRSK G  KPKTYAA L  +     +EP++ KEAL  PEW  AMK EY AL+ NQT
Sbjct: 458  HLMTTRSKAGIFKPKTYAAALVKSSYDHTIEPNTVKEALAKPEWLKAMKDEYQALVSNQT 517

Query: 1539 WSLFPISQLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVI 1360
            WSL     LP   K IGCKWIFK K N DGS  +HKARLVAKG+ Q  GLD++ETFSPV+
Sbjct: 518  WSLV---DLPIGYKPIGCKWIFKSKYNPDGSFQRHKARLVAKGYNQKPGLDFSETFSPVV 574

Query: 1359 KPATIKIILSLALTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKLH 1180
            KP T++I+LSLA+TN W I Q+DI+N FL+GD+   +YM Q PGF  T H  +  VCKL+
Sbjct: 575  KPTTVRIVLSLAITNQWPIHQIDINNVFLHGDLQESVYMSQPPGF-NTQH--KDKVCKLN 631

Query: 1179 KSLYGLKQASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVTGSC 1000
            K++YGLKQA R+W  KL+  L   GF  +K+D SLF R S+ + + +L YVDDII+TG+ 
Sbjct: 632  KAIYGLKQAPRSWYCKLSNTLIQMGFHSTKSDTSLFVRFSKTTTLMLLIYVDDIIITGNS 691

Query: 999  ATAIQTVIDDLHRVFSLKDLGNLSYFLGIQVDYTPNG-LLLTQQKYIQDLLDSAGMKGAK 823
               I++VI  LH  FSLKDLG+L YFLG++V  T  G LLLTQ KY++++L  A M  + 
Sbjct: 692  KEEIRSVISFLHDKFSLKDLGSLHYFLGVEVTTTKEGNLLLTQTKYLREILHKASMSDST 751

Query: 822  GLSSPMVSRPLLSKHDGNPISDASLYRKIVGSLQYATMTRPDISYSVNKVSQYMQNPLDS 643
               +PM++   L++++   + D S YR IVG+LQY T+TRPD+S++VNKV QYM  P + 
Sbjct: 752  PQPTPMLANLKLTENETTSVPDPSFYRSIVGALQYLTITRPDVSFAVNKVCQYMHCPQEH 811

Query: 642  HWKAVKRILRYLAGTIDHGLLFTKGHLHRINTFADADWGSDLDDRRSTSGYCVYFGSNLV 463
            HWKAVKRILRYL GTI HGLL  K     +  F D+DWG+D DDR+STSGYCVY GSNL+
Sbjct: 812  HWKAVKRILRYLQGTIHHGLLIQKNKQLNLAGFCDSDWGNDKDDRKSTSGYCVYLGSNLI 871

Query: 462  SWSAKKQAVVSRSSTEAEYRSIASATCDVFWIHSLLQEIGFQIHKPTTVWTDNLGAVSLS 283
            SWS++KQ  VSRS+TEAEYRSIA    D+ WI SLL E+      P  ++ DNL AV ++
Sbjct: 872  SWSSRKQKSVSRSTTEAEYRSIADVAADIIWIQSLLSELRVPKSLP-RIYCDNLSAVLIT 930

Query: 282  VNPVFHSRTKHFELDLHFIREKVAKQQISVQHIPGSEQVADILTKPLTGQFFVRLRNKLN 103
             NPV HS+TKHFELDLHF+R+KV + ++ V H+P   QVAD LTKPL  Q F   RNKL 
Sbjct: 931  ANPVLHSKTKHFELDLHFVRDKVKQNEVKVIHLPAKYQVADTLTKPLAKQHFHHFRNKLM 990

Query: 102  VVSKSSLELRG 70
            V +  ++ LRG
Sbjct: 991  VTTLDTMSLRG 1001



 Score =  317 bits (811), Expect = 9e-87
 Identities = 165/347 (47%), Positives = 217/347 (62%)
 Frame = -2

Query: 3093 VQDQKSGVILLKGNVENGLYKFHFSNSQSPLSRISPSCSANSKNLSVNHLQLQKSAIDVA 2914
            V+ Q +  I+L+G ++ GLY F       P  + + S SA     +V  L   +S  ++ 
Sbjct: 46   VKTQDTNQIILQGRLQQGLYVF-------PNLKTTDSYSAYQ---AVTELNSAQSFSNLQ 95

Query: 2913 IWHSRLGHVPLDIIKKVFQGCNFPFNDNNSQFICPSCCKAKSHIQPFPTSTTEHNKLLEL 2734
            +WH+RLGH    I+K V   C    N NN+   C SCC  K H  PF  STT ++K LEL
Sbjct: 96   LWHARLGHPSSKIVKTVLDKCQISCNTNNN-LNCHSCCLGKVHQLPFIQSTTVYSKPLEL 154

Query: 2733 IHTDLWGPAPLKSNNGYAYYISFIDHASRYTWIYLLKNKSDTSKAFLHFKNLAENQCNTR 2554
            + TD+WGP+P+ S +G  YYI F+D  S+Y+WIYLL+ KS    AFL  K+LAE Q  T+
Sbjct: 155  VFTDIWGPSPIASTDGSRYYIVFLDAFSKYSWIYLLQYKSQALYAFLQLKSLAEKQLGTK 214

Query: 2553 IKAIQSDGGTEYKPLHDILAQNGIIHRISCPYTPQQNGLAERKHRHIIETALSLLAHSSV 2374
            +KA+QSD   E+      L QNGIIHR+SCP+T QQNG  ERKHRHI ET L+LLA +S+
Sbjct: 215  LKALQSDNAKEFLTFSPYLKQNGIIHRLSCPHTHQQNGSPERKHRHITETGLTLLAQASL 274

Query: 2373 PQSYWDDAVTSAVFLINRMPSKVLKYKSPYEVFTGHKPNYSFLKVFGCLCYPHLRPYNKH 2194
            P S+W +A  +A  LIN +P+  L   SPYE+     P+Y FLK+FGC CYP LRPYN H
Sbjct: 275  PLSFWGEAFLTATSLINMLPTPNLDNASPYEMLFHKAPDYKFLKIFGCACYPLLRPYNPH 334

Query: 2193 KLEFRSTPGVFIGYSLQYKGYKVLLPNKKIVITRNVVFDEDKFPFQT 2053
            K +F+S   +F+GYS  +KGY  L P+ K  I+RNV F E  FP QT
Sbjct: 335  KFDFKSQQCLFLGYSPSHKGYICLSPSGKRYISRNVKFFETVFPCQT 381


>gb|KYP44480.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 552

 Score =  570 bits (1469), Expect = 0.0
 Identities = 297/554 (53%), Positives = 384/554 (69%), Gaps = 12/554 (2%)
 Frame = -2

Query: 1698 MITRSKTGNLKPKTYAAVLQTNL-------EPHSYKEALRIPEWNAAMKKEYAALLKNQT 1540
            MITR+K G  KPK Y  V  T         EP S KEA+ IP W   M +EY AL+KN T
Sbjct: 1    MITRAKAGIHKPKAYNIVTTTPKLDLNPFHEPRSIKEAMAIPHWKKTMLEEYKALMKNNT 60

Query: 1539 WSLFPISQLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVI 1360
            W L   + LP  + LIGC+W+FK+K NSDGS+ +HKARLVAKGF Q +G D++ETFSPV+
Sbjct: 61   WIL---TTLPAGRNLIGCRWVFKVKTNSDGSINRHKARLVAKGFHQRDGFDFSETFSPVV 117

Query: 1359 KPATIKIILSLALTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKLH 1180
            KPATI+IILS+ ++ SW +RQ+DI NAFLNGD+  ++YM Q PGF+QT    + +VCKL 
Sbjct: 118  KPATIRIILSIVVSRSWDMRQIDIANAFLNGDLQEDIYMAQPPGFIQTD---KSLVCKLQ 174

Query: 1179 KSLYGLKQASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVTGSC 1000
            KSLYGLKQA RAW  +L   L   GF  +K D+SLF R  +D   FIL YVDDII+ GS 
Sbjct: 175  KSLYGLKQAPRAWFERLHLSLSRIGFYYAKMDSSLFIRFHKDHITFILVYVDDIIICGSS 234

Query: 999  ATAIQTVIDDLHRVFSLKDLGNLSYFLGIQVDYTPNG-LLLTQQKYIQDLLDSAGMKGAK 823
             +AI +V++ L   F ++DLG  +YFLGIQVD  PN  L+LTQ KYI DLL+   M  AK
Sbjct: 235  TSAISSVVEQLQSEFPVRDLGFPNYFLGIQVDQLPNRTLMLTQTKYINDLLNRTNMHMAK 294

Query: 822  GLSSPMVSRPLLSKHDGNPISDASLYRKIVGSLQYATMTRPDISYSVNKVSQYMQNPLDS 643
             + +PMV+   L   +G    + + YR IVGSLQY T+TRP+I++SVNKV QYMQ P + 
Sbjct: 295  PIKTPMVAGLKLQPLEGTAHYEITQYRSIVGSLQYITITRPEIAFSVNKVCQYMQAPRNP 354

Query: 642  HWKAVKRILRYLAGTIDHGLLFTKGHLHRINTFADADWGSDLDDRRSTSGYCVYFGSNLV 463
            HW AVKRILRYL GT++  L   K     I  F DADWGS+L+DR+ST+GY +Y G+N +
Sbjct: 355  HWMAVKRILRYLCGTLNTSLHLIKSPDFSIKGFCDADWGSNLEDRKSTTGYVIYLGANPI 414

Query: 462  SWSAKKQAVVSRSSTEAEYRSIASATCDVFWIHSLLQEIGFQIHKPTT----VWTDNLGA 295
            SWS+KKQ  VSRS+TEAEYRSIA+ T ++ W+ +LL    +++H PTT    ++ DNL A
Sbjct: 415  SWSSKKQQAVSRSTTEAEYRSIAAITAEMTWLKNLL----YELHIPTTSKPIIYCDNLSA 470

Query: 294  VSLSVNPVFHSRTKHFELDLHFIREKVAKQQISVQHIPGSEQVADILTKPLTGQFFVRLR 115
            V LS NP+ H++TKHFE+DL+F+R++V K+Q++VQHIP SEQ  DILTK L+   F   +
Sbjct: 471  VLLSTNPILHTKTKHFEIDLYFVRDQVQKKQLAVQHIPSSEQTTDILTKALSFPAFNHCK 530

Query: 114  NKLNVVSKSSLELR 73
            NKL V    +L LR
Sbjct: 531  NKLRVRLHPTLSLR 544


>gb|KYP34165.1| Copia protein [Cajanus cajan]
          Length = 542

 Score =  563 bits (1450), Expect = 0.0
 Identities = 290/545 (53%), Positives = 373/545 (68%), Gaps = 2/545 (0%)
 Frame = -2

Query: 1698 MITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNAAMKKEYAALLKNQTWSLFPIS 1519
            M+TR+K G  KPK Y A      EP +  +AL   +W  AM+ EY ALLKN TW L    
Sbjct: 1    MVTRAKAGIFKPKVYLATT----EPTNVAQALEHKQWKQAMQAEYDALLKNCTWDLV--- 53

Query: 1518 QLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVIKPATIKI 1339
             LPPD+K I CKWIFK K + DGS+ +HKARLVA+GF Q  GLDYT+TFSPV++P +I++
Sbjct: 54   SLPPDRKAITCKWIFKNKYSQDGSILRHKARLVARGFNQQPGLDYTDTFSPVVRPVSIRV 113

Query: 1338 ILSLALTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGE-QMVCKLHKSLYGL 1162
            +L++A++  W I Q+D+DNAFLNGD+  E+YM Q  GF    H G    VCKL K++YGL
Sbjct: 114  VLAIAVSKGWPIHQIDVDNAFLNGDLKEEIYMLQPQGF----HQGSPNTVCKLRKAIYGL 169

Query: 1161 KQASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVTGSCATAIQT 982
            KQA RAW  KLT  L   GF  +K+DNSLF   SR + I+IL YVDD+I+T + ATAI+ 
Sbjct: 170  KQAPRAWFQKLTLTLFRLGFIQAKSDNSLFISTSRTTSIYILVYVDDVIITSNSATAIRG 229

Query: 981  VIDDLHRVFSLKDLGNLSYFLGIQVDY-TPNGLLLTQQKYIQDLLDSAGMKGAKGLSSPM 805
            +I  LH+ F LKDLG L +FLGI+V      G+ L+Q +Y+ D+LD   M  A+ + +PM
Sbjct: 230  LIQALHQYFPLKDLGRLHHFLGIEVHSDNAGGVHLSQTRYVTDILDRLNMSNARPVKTPM 289

Query: 804  VSRPLLSKHDGNPISDASLYRKIVGSLQYATMTRPDISYSVNKVSQYMQNPLDSHWKAVK 625
                 L+        D S YR IVG+LQY T+TRPDI+Y+VNK+ Q+M NPLD HWKA K
Sbjct: 290  APASKLTNDGTEACQDPSQYRSIVGALQYLTITRPDIAYTVNKLCQFMHNPLDVHWKATK 349

Query: 624  RILRYLAGTIDHGLLFTKGHLHRINTFADADWGSDLDDRRSTSGYCVYFGSNLVSWSAKK 445
            R+LRYL GT+ HGL + K     I  + D+DW SD +D RSTSG CVY GSN+VSW AKK
Sbjct: 350  RLLRYLKGTLHHGLHYKKFTDTEIYAYCDSDWASDQEDLRSTSGNCVYLGSNIVSWMAKK 409

Query: 444  QAVVSRSSTEAEYRSIASATCDVFWIHSLLQEIGFQIHKPTTVWTDNLGAVSLSVNPVFH 265
            Q VVSRSSTEAE+RS+AS   ++ ++ +LL E+G        +W DN GAV LS+NPV H
Sbjct: 410  QKVVSRSSTEAEFRSMASLVAEIQYVQNLLSELGHINKNQPLIWCDNQGAVLLSLNPVLH 469

Query: 264  SRTKHFELDLHFIREKVAKQQISVQHIPGSEQVADILTKPLTGQFFVRLRNKLNVVSKSS 85
            +RTKHFELDL FIRE+VA+ +I V+HIP   QVAD+LTK  +   F+ LR+KL V  +S+
Sbjct: 470  TRTKHFELDLWFIRERVAQGKIVVKHIPARLQVADLLTKAPSTAIFLDLRDKLVVDRQST 529

Query: 84   LELRG 70
            L LRG
Sbjct: 530  LSLRG 534


>gb|KYP50410.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 538

 Score =  560 bits (1444), Expect = 0.0
 Identities = 291/541 (53%), Positives = 375/541 (69%), Gaps = 4/541 (0%)
 Frame = -2

Query: 1698 MITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNAAMKKEYAALLKNQTWSLFPIS 1519
            M TR+K G +KP+    +L T++EP + K+AL    W AAMK+EY ALL N TW+L    
Sbjct: 1    MTTRAKAGIVKPRLQPTLLLTHIEPKNTKQALASDTWLAAMKQEYNALLNNGTWTLV--- 57

Query: 1518 QLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVIKPATIKI 1339
             LPP+K  IGCKW+F++K NSDG+V K+KARLVAKGF Q  G DY ETFSPV+KP TI++
Sbjct: 58   SLPPNKTAIGCKWVFRIKENSDGTVNKYKARLVAKGFHQQFGSDYNETFSPVVKPVTIRL 117

Query: 1338 ILSLALTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSLYGLK 1159
            IL+LALT+ W I+QLD++NAFLNG++  E+YM Q PGF  +    + +VCKLHK++YGLK
Sbjct: 118  ILTLALTHHWSIQQLDVNNAFLNGNLQEEVYMSQPPGFESS---DKTLVCKLHKAIYGLK 174

Query: 1158 QASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVTGSCATAIQTV 979
            QA RAW  KL   L    F +SK D SLF  +  ++ I+IL YVDDII+TG+ ++ +Q +
Sbjct: 175  QAPRAWFDKLKTTLFQLNFQISKCDPSLFVYSHDNNVIYILVYVDDIIITGNNSSTLQNI 234

Query: 978  IDDLHRVFSLKDLGNLSYFLGIQVDYTPNG-LLLTQQKYIQDLLDSAGMKGAKGLSSPMV 802
            I  L+  FSLKDLG L +FLGI+V    +G L LTQ KYI+DLL+   M+ +  +SSPMV
Sbjct: 235  IAQLNSAFSLKDLGRLDFFLGIEVKSNTDGSLTLTQSKYIRDLLNRTNMENSNPISSPMV 294

Query: 801  SRPLLSKHDGNPISDASLYRKIVGSLQYATMTRPDISYSVNKVSQYMQNPLDSHWKAVKR 622
            S   LS+       D +LYR +VG+LQYAT+TRP+IS+SVNKV Q+M NPL+ HW AVKR
Sbjct: 295  SGCKLSRTGSEKFLDVTLYRSVVGALQYATITRPEISFSVNKVCQFMSNPLEQHWSAVKR 354

Query: 621  ILRYLAGTIDHGLLFTKGHLH---RINTFADADWGSDLDDRRSTSGYCVYFGSNLVSWSA 451
            ILRYL GT+  GL       +    I  + DADW SD DDRRSTSG  ++ G NL+SW +
Sbjct: 355  ILRYLKGTMFLGLHLQPAPSNSPLSIRAYCDADWASDPDDRRSTSGASIFVGPNLISWWS 414

Query: 450  KKQAVVSRSSTEAEYRSIASATCDVFWIHSLLQEIGFQIHKPTTVWTDNLGAVSLSVNPV 271
            KKQ VV+RSS EAEYRS+A AT +V WI +LL E+    H P  V+ DN+  V+L+ NPV
Sbjct: 415  KKQTVVARSSAEAEYRSLALATAEVLWIQTLLSELHVSHHTP-VVYCDNMSTVALAHNPV 473

Query: 270  FHSRTKHFELDLHFIREKVAKQQISVQHIPGSEQVADILTKPLTGQFFVRLRNKLNVVSK 91
             H+RTKH ELDL F+REKVA   + V H+P  +Q ADILTK L+   F  LR KL +V  
Sbjct: 474  LHARTKHMELDLFFVREKVAANSLHVVHVPAIDQYADILTKALSPSRFCELRTKLKLVDS 533

Query: 90   S 88
            S
Sbjct: 534  S 534


>gb|KHN36156.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Glycine soja]
          Length = 1417

 Score =  587 bits (1512), Expect = e-180
 Identities = 299/545 (54%), Positives = 384/545 (70%), Gaps = 4/545 (0%)
 Frame = -2

Query: 1722 VNQNQGHHMITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNAAMKKEYAALLKNQ 1543
            ++ +  H MITR+KTGNLKPK + A L    EP S K AL  P W  AM+ EY AL+ NQ
Sbjct: 884  ISHHNAHPMITRAKTGNLKPKVFVAAL----EPKSVKSALNDPAWLQAMQAEYKALMDNQ 939

Query: 1542 TWSLFPISQLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPV 1363
            TW+L P   LP  +K IGCKWIF++K N DG+V K KARLVAKGF Q  G D+TETFSPV
Sbjct: 940  TWTLVP---LPQHRKAIGCKWIFRVKENPDGTVNKFKARLVAKGFLQTAGFDFTETFSPV 996

Query: 1362 IKPATIKIILSLALTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKL 1183
            IKP TI+IIL+LA+T  W ++Q+D++NAFLNG +  E+YM Q  GF  +    + +VCKL
Sbjct: 997  IKPITIRIILTLAVTFKWSVQQIDVNNAFLNGILQEEVYMTQPAGFEASD---KSLVCKL 1053

Query: 1182 HKSLYGLKQASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVTGS 1003
            HKSLYGLKQA RAW  +LT+ L   GF  SK D SL       +  ++L YVDDI++TGS
Sbjct: 1054 HKSLYGLKQAPRAWYDRLTQALLQLGFVKSKCDPSLLIHTQNGACTYVLIYVDDILITGS 1113

Query: 1002 CATAIQTVIDDLHRVFSLKDLGNLSYFLGIQVDYTPNG-LLLTQQKYIQDLLDSAGMKGA 826
                I  +I  L+  F+LK LG + YFLGI+V + P+G LLL Q KYI+DLL  A M+ +
Sbjct: 1114 APHLISDLIHKLNMKFALKQLGQIDYFLGIEVHHLPSGALLLNQTKYIRDLLCKAHMEDS 1173

Query: 825  KGLSSPMVSRPLLSKHDGNPISDASLYRKIVGSLQYATMTRPDISYSVNKVSQYMQNPLD 646
              + SPMVS   LSK+  + ++D +LYR IVG+LQYAT+TRPDI++SVNKV Q+M +PL+
Sbjct: 1174 APIGSPMVSSCRLSKYGSDTMTDPTLYRSIVGALQYATLTRPDIAFSVNKVCQFMAHPLE 1233

Query: 645  SHWKAVKRILRYLAGTIDHGLLFTKGHL---HRINTFADADWGSDLDDRRSTSGYCVYFG 475
            SHWKAVKRILRYL GT+ HGLL T         +  ++DADW +D DDRRSTSG C+YFG
Sbjct: 1234 SHWKAVKRILRYLNGTLSHGLLLTPSPTSPPFSLRAYSDADWATDQDDRRSTSGSCIYFG 1293

Query: 474  SNLVSWSAKKQAVVSRSSTEAEYRSIASATCDVFWIHSLLQEIGFQIHKPTTVWTDNLGA 295
             NL+SW +KKQ +V+RSSTEAEYRS+A+ T D+ WI SLL+E+      PT +  DNL A
Sbjct: 1294 PNLISWGSKKQQLVARSSTEAEYRSMANTTADLLWIQSLLRELQVPFLTPTLL-CDNLSA 1352

Query: 294  VSLSVNPVFHSRTKHFELDLHFIREKVAKQQISVQHIPGSEQVADILTKPLTGQFFVRLR 115
            VSLS NP+ HS+TKH ELD+HF+REKV  +Q+++ H+P  +Q+AD LTKPL+      +R
Sbjct: 1353 VSLSHNPILHSKTKHIELDIHFVREKVLSKQLNILHVPAQDQLADPLTKPLSPSQHTAIR 1412

Query: 114  NKLNV 100
             KL V
Sbjct: 1413 TKLKV 1417



 Score =  322 bits (825), Expect = 1e-86
 Identities = 161/366 (43%), Positives = 228/366 (62%), Gaps = 13/366 (3%)
 Frame = -2

Query: 3093 VQDQKSGVILLKGNV-ENGLYKFH---FSNSQSPLSRISPSCSANSKNLSV--------N 2950
            V+ Q S  +LL+G V  +GLY+F    F  +    S    S  ++S   SV        N
Sbjct: 426  VKYQDSKQVLLEGTVGADGLYQFKPFKFLTNSGAASNSDSSSMSSSSQFSVFNNPVNCNN 485

Query: 2949 HLQLQKSAIDVAIWHSRLGHVPLDIIKKVFQGCNFPFNDNNSQFICPSCCKAKSHIQPFP 2770
             + + ++     +WH RLGH     +K +   CN PF++  +   C  CC  KSH    P
Sbjct: 486  TVSVMQNGNVFQMWHLRLGHAHTSAVKNILNLCNIPFSNKTATLPCTFCCMGKSHRLHSP 545

Query: 2769 TSTTEHNKLLELIHTDLWGPAPLKSNNGYAYYISFIDHASRYTWIYLLKNKSDTSKAFLH 2590
             S T + K  E+IH DLWGPAP  S  GY+YYI+F+D  +++TWIY LK KSD  KAF  
Sbjct: 546  LSNTVYTKPFEVIHCDLWGPAPFVSYYGYSYYITFVDTYTKFTWIYFLKAKSDALKAFTQ 605

Query: 2589 FKNLAENQCNTRIKAIQSDGGTEYKPLHDILAQNGIIHRISCPYTPQQNGLAERKHRHII 2410
            FK L +NQ    IKAIQSD G E++    +L + GI HR++CP+T  QNG  ERKHRHI+
Sbjct: 606  FKALIQNQFQASIKAIQSDWGGEFRAFTALLNELGIQHRLTCPHTSHQNGTVERKHRHIV 665

Query: 2409 ETALSLLAHSSVPQSYWDDAVTSAVFLINRMPSKVLK-YKSPYEVFTGHKPNYSFLKVFG 2233
            E  L+LL+H+++P  +WD + T AV+LINR+PS  +  ++SPY      +P+YS +KVFG
Sbjct: 666  EMGLTLLSHAALPLKFWDHSFTQAVYLINRLPSSAIPLFQSPYHALHQSQPDYSQIKVFG 725

Query: 2232 CLCYPHLRPYNKHKLEFRSTPGVFIGYSLQYKGYKVLLPNKKIVITRNVVFDEDKFPFQT 2053
            CLC+PHLRPYN HKL++RS+P V++G S Q+KG+K L    +I I+++V+F E +FP+ +
Sbjct: 726  CLCFPHLRPYNNHKLQYRSSPCVYLGVSPQHKGHKCLDATGRIYISKDVIFHESQFPYLS 785

Query: 2052 TVAGSN 2035
              A S+
Sbjct: 786  LFASSS 791



 Score =  130 bits (326), Expect = 1e-26
 Identities = 91/371 (24%), Positives = 159/371 (42%), Gaps = 7/371 (1%)
 Frame = -1

Query: 4177 ITTKLTEVNFLVWKQQILAAINGYGLEGYLTGEISAPDQLTSEKTL-----NPAYGVWKR 4013
            +T KL E NFL+W QQ+   I  + L  ++      P Q  S +       +  Y  W  
Sbjct: 1    LTIKLDEKNFLLWSQQVNGVITAHNLHRFVVNP-QIPLQFASIEDCALGINSDEYQQWLI 59

Query: 4012 QDQVIASWXXXXXXXXXXITTVGFTTSKQIWDALTEGFASQSRAKIMQYKLQLQNLRKGT 3833
            +DQ + +W             +    + ++WD + + F S  +++  Q + +L+N +K +
Sbjct: 60   KDQTLFTWLLSTLSDGVLPRVLSCRHAHEVWDKIHKYFNSVLKSRARQLRSELKNTKKLS 119

Query: 3832 NSMREYLNRAKVCCDMLATIGYKLSEEEQIMYILTGLNAEYNAVVVSINSRVEPYTLMEV 3653
             S+ EYL R K   + L  +G  +SE+EQ+  IL GL  E+N+ V+ + SR +  T+ +V
Sbjct: 120  RSVNEYLLRIKSIVNSLVAVGDMVSEQEQVDSILEGLPEEFNSFVMMVYSRFDTPTVEDV 179

Query: 3652 HAXXXXXXXXXXXXENTVSQINSEGSLPSANVATNESNSKXXXXXXXXXXXXXXXXXXXX 3473
             A            +  ++  +   ++  A+  TN S+S                     
Sbjct: 180  EALLLLQEAQFEKFKQELTSPSVSANV--AHTETNASDSNSEHESQELGTEHYNVNANRG 237

Query: 3472 XXXXXXXXXXXXXXXXXGWRQPRCQICFIPGHSAAKCFHRANLNFVPTSNNNSFYTQNQS 3293
                                + +CQIC  P H A  C++R +   +   N+   Y    S
Sbjct: 238  RGRGKGRGRGRGKGQAQNQGKVKCQICAKPNHDAINCWYRYDPQAM-NQNSRGGYQVGPS 296

Query: 3292 TNHNSNDPH--ANRYGSFSANVASTSQDHAQETCWFPDSGATNHLTYDLGNLNLAHDYQG 3119
                + +P+     + +     A  + D      W+PDSGA++HLTY+  NL+ +  Y G
Sbjct: 297  NRPQNFNPYMRPTAHLAMPQPYAMPNMDQFSNGAWYPDSGASHHLTYNPNNLSYSSPYTG 356

Query: 3118 TDRIQIGNGSG 3086
             D++ +GNG G
Sbjct: 357  QDQVVMGNGQG 367


>gb|KHN22040.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Glycine soja]
          Length = 1417

 Score =  587 bits (1512), Expect = e-180
 Identities = 299/545 (54%), Positives = 384/545 (70%), Gaps = 4/545 (0%)
 Frame = -2

Query: 1722 VNQNQGHHMITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNAAMKKEYAALLKNQ 1543
            ++ +  H MITR+KTGNLKPK + A L    EP S K AL  P W  AM+ EY AL+ NQ
Sbjct: 884  ISHHNAHPMITRAKTGNLKPKVFVAAL----EPKSVKSALNDPAWLQAMQAEYKALMDNQ 939

Query: 1542 TWSLFPISQLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPV 1363
            TW+L P   LP  +K IGCKWIF++K N DG+V K KARLVAKGF Q  G D+TETFSPV
Sbjct: 940  TWTLVP---LPQHRKAIGCKWIFRVKENPDGTVNKFKARLVAKGFLQTAGFDFTETFSPV 996

Query: 1362 IKPATIKIILSLALTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKL 1183
            IKP TI+IIL+LA+T  W ++Q+D++NAFLNG +  E+YM Q  GF  +    + +VCKL
Sbjct: 997  IKPITIRIILTLAVTFKWSVQQIDVNNAFLNGILQEEVYMTQPAGFEASD---KSLVCKL 1053

Query: 1182 HKSLYGLKQASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVTGS 1003
            HKSLYGLKQA RAW  +LT+ L   GF  SK D SL       +  ++L YVDDI++TGS
Sbjct: 1054 HKSLYGLKQAPRAWYDRLTQALLQLGFVKSKCDPSLLIHTQNGACTYVLIYVDDILITGS 1113

Query: 1002 CATAIQTVIDDLHRVFSLKDLGNLSYFLGIQVDYTPNG-LLLTQQKYIQDLLDSAGMKGA 826
                I  +I  L+  F+LK LG + YFLGI+V + P+G LLL Q KYI+DLL  A M+ +
Sbjct: 1114 APHLISDLIHKLNMKFALKQLGQIDYFLGIEVHHLPSGALLLNQTKYIRDLLCKAHMEDS 1173

Query: 825  KGLSSPMVSRPLLSKHDGNPISDASLYRKIVGSLQYATMTRPDISYSVNKVSQYMQNPLD 646
              + SPMVS   LSK+  + ++D +LYR IVG+LQYAT+TRPDI++SVNKV Q+M +PL+
Sbjct: 1174 APIGSPMVSSCRLSKYGSDTMTDPTLYRSIVGALQYATLTRPDIAFSVNKVCQFMAHPLE 1233

Query: 645  SHWKAVKRILRYLAGTIDHGLLFTKGHL---HRINTFADADWGSDLDDRRSTSGYCVYFG 475
            SHWKAVKRILRYL GT+ HGLL T         +  ++DADW +D DDRRSTSG C+YFG
Sbjct: 1234 SHWKAVKRILRYLNGTLSHGLLLTPSPTSPPFSLRAYSDADWATDQDDRRSTSGSCIYFG 1293

Query: 474  SNLVSWSAKKQAVVSRSSTEAEYRSIASATCDVFWIHSLLQEIGFQIHKPTTVWTDNLGA 295
             NL+SW +KKQ +V+RSSTEAEYRS+A+ T D+ WI SLL+E+      PT +  DNL A
Sbjct: 1294 PNLISWGSKKQQLVARSSTEAEYRSMANTTADLLWIQSLLRELQVPFLTPTLL-CDNLSA 1352

Query: 294  VSLSVNPVFHSRTKHFELDLHFIREKVAKQQISVQHIPGSEQVADILTKPLTGQFFVRLR 115
            VSLS NP+ HS+TKH ELD+HF+REKV  +Q+++ H+P  +Q+AD LTKPL+      +R
Sbjct: 1353 VSLSHNPILHSKTKHIELDIHFVREKVLSKQLNILHVPAQDQLADPLTKPLSPSQHTAIR 1412

Query: 114  NKLNV 100
             KL V
Sbjct: 1413 TKLKV 1417



 Score =  320 bits (821), Expect = 4e-86
 Identities = 160/366 (43%), Positives = 227/366 (62%), Gaps = 13/366 (3%)
 Frame = -2

Query: 3093 VQDQKSGVILLKGNV-ENGLYKFH---FSNSQSPLSRISPSCSANSKNLSV--------N 2950
            V+ Q S  +LL+G V  +GLY+F    F  +    S    S  ++S   SV        N
Sbjct: 426  VKYQDSKQVLLEGTVGADGLYQFKPFKFLTNSGAASNSDSSSMSSSSQFSVFNNPVNCNN 485

Query: 2949 HLQLQKSAIDVAIWHSRLGHVPLDIIKKVFQGCNFPFNDNNSQFICPSCCKAKSHIQPFP 2770
             + + ++     +WH RLGH     +K +   CN PF++  +   C  CC  KSH    P
Sbjct: 486  TVSVMQNGNVFQMWHLRLGHAHTSAVKNILNLCNIPFSNKTATLPCTFCCMGKSHRLHSP 545

Query: 2769 TSTTEHNKLLELIHTDLWGPAPLKSNNGYAYYISFIDHASRYTWIYLLKNKSDTSKAFLH 2590
             S T + K  E+IH DLWGPAP  S  GY+YYI+F+D  +++TWIY LK KSD  KAF  
Sbjct: 546  LSNTVYTKPFEVIHCDLWGPAPFVSYYGYSYYITFVDTYTKFTWIYFLKAKSDALKAFTQ 605

Query: 2589 FKNLAENQCNTRIKAIQSDGGTEYKPLHDILAQNGIIHRISCPYTPQQNGLAERKHRHII 2410
            FK L +NQ    IKAIQSD G E++    +L + GI HR++CP+T  QNG  ERKHRHI+
Sbjct: 606  FKALIQNQFQASIKAIQSDWGGEFRAFTALLNELGIQHRLTCPHTSHQNGTVERKHRHIV 665

Query: 2409 ETALSLLAHSSVPQSYWDDAVTSAVFLINRMPSKVLK-YKSPYEVFTGHKPNYSFLKVFG 2233
            E  L+LL+H+ +P  +WD + T AV+LINR+PS  +  ++SPY      +P+YS +KVFG
Sbjct: 666  EMGLTLLSHADLPLKFWDHSFTQAVYLINRLPSSAIPLFQSPYHALHQSQPDYSQIKVFG 725

Query: 2232 CLCYPHLRPYNKHKLEFRSTPGVFIGYSLQYKGYKVLLPNKKIVITRNVVFDEDKFPFQT 2053
            CLC+PHLRPYN HKL+++S+P V++G S Q+KG+K L    +I I+++V+F E +FP+ +
Sbjct: 726  CLCFPHLRPYNNHKLQYKSSPCVYLGVSPQHKGHKCLDATGRIYISKDVIFHESQFPYLS 785

Query: 2052 TVAGSN 2035
              A S+
Sbjct: 786  LFASSS 791



 Score =  130 bits (326), Expect = 1e-26
 Identities = 91/371 (24%), Positives = 159/371 (42%), Gaps = 7/371 (1%)
 Frame = -1

Query: 4177 ITTKLTEVNFLVWKQQILAAINGYGLEGYLTGEISAPDQLTSEKTL-----NPAYGVWKR 4013
            +T KL E NFL+W QQ+   I  + L  ++      P Q  S +       +  Y  W  
Sbjct: 1    LTIKLDEKNFLLWSQQVNGVITAHNLHRFVVNP-QIPLQFASIEDCALGINSDEYQQWLI 59

Query: 4012 QDQVIASWXXXXXXXXXXITTVGFTTSKQIWDALTEGFASQSRAKIMQYKLQLQNLRKGT 3833
            +DQ + +W             +    + ++WD + + F S  +++  Q + +L+N +K +
Sbjct: 60   KDQTLFTWLLSTLSDGVLPRVLSCRHAHEVWDKIHKYFNSVLKSRARQLRSELKNTKKLS 119

Query: 3832 NSMREYLNRAKVCCDMLATIGYKLSEEEQIMYILTGLNAEYNAVVVSINSRVEPYTLMEV 3653
             S+ EYL R K   + L  +G  +SE+EQ+  IL GL  E+N+ V+ + SR +  T+ +V
Sbjct: 120  RSVNEYLLRIKSIVNSLVAVGDMVSEQEQVDSILEGLPEEFNSFVMMVYSRFDTPTVEDV 179

Query: 3652 HAXXXXXXXXXXXXENTVSQINSEGSLPSANVATNESNSKXXXXXXXXXXXXXXXXXXXX 3473
             A            +  ++  +   ++  A+  TN S+S                     
Sbjct: 180  EALLLLQEAQFEKFKQELTSPSVSANV--AHTETNASDSNSEHESQELGTEHYNVNANRG 237

Query: 3472 XXXXXXXXXXXXXXXXXGWRQPRCQICFIPGHSAAKCFHRANLNFVPTSNNNSFYTQNQS 3293
                                + +CQIC  P H A  C++R +   +   N+   Y    S
Sbjct: 238  RGRGKGRGRGRGKGQAQNQGKVKCQICAKPNHDAINCWYRYDPQAM-NQNSRGGYQVGPS 296

Query: 3292 TNHNSNDPH--ANRYGSFSANVASTSQDHAQETCWFPDSGATNHLTYDLGNLNLAHDYQG 3119
                + +P+     + +     A  + D      W+PDSGA++HLTY+  NL+ +  Y G
Sbjct: 297  NRPQNFNPYMRPTAHLAMPQPYAMPNMDQFSNGAWYPDSGASHHLTYNPNNLSYSSPYTG 356

Query: 3118 TDRIQIGNGSG 3086
             D++ +GNG G
Sbjct: 357  QDQVVMGNGQG 367


>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
          Length = 1455

 Score =  587 bits (1513), Expect = e-180
 Identities = 287/548 (52%), Positives = 383/548 (69%)
 Frame = -2

Query: 1704 HHMITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNAAMKKEYAALLKNQTWSLFP 1525
            H MITR+K+G +KPK + A ++   EP S   AL+  EW  AM  EY AL +N TWSL P
Sbjct: 914  HPMITRAKSGIVKPKIFIAAIR---EPSSVSAALQQDEWKKAMVAEYDALQRNNTWSLVP 970

Query: 1524 ISQLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVIKPATI 1345
               LP  ++ IGCKW++K K N DG+V K+KARLVAKGF Q  G D+TETFSPV+KP+T+
Sbjct: 971  ---LPAGRQAIGCKWVYKTKENPDGTVQKYKARLVAKGFHQQAGFDFTETFSPVVKPSTV 1027

Query: 1344 KIILSLALTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSLYG 1165
            +++ ++AL+ +W I+QLD++NAFLNGD+  E++M+Q  GF+        +VC+LHK+LYG
Sbjct: 1028 RVVFTIALSRNWAIKQLDVNNAFLNGDLQEEVFMQQPQGFID--EQNPNLVCRLHKALYG 1085

Query: 1164 LKQASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVTGSCATAIQ 985
            LKQA RAW  KL + L SFGF  +K+D SLF R + +   ++L YVDDI+V GS   AI 
Sbjct: 1086 LKQAPRAWFEKLHRALLSFGFVSAKSDQSLFLRFTPNHITYVLVYVDDILVIGSDTAAIT 1145

Query: 984  TVIDDLHRVFSLKDLGNLSYFLGIQVDYTPNGLLLTQQKYIQDLLDSAGMKGAKGLSSPM 805
            ++I  L+  FSLKDLG + YFLGIQV +T NGL L+Q KYI+DLL    M   K   +P+
Sbjct: 1146 SLIAQLNSEFSLKDLGEVHYFLGIQVSHTNNGLHLSQTKYIRDLLQKTKMVHCKPARTPL 1205

Query: 804  VSRPLLSKHDGNPISDASLYRKIVGSLQYATMTRPDISYSVNKVSQYMQNPLDSHWKAVK 625
             +   L   DG+P+ D   YR  VG+LQY T+TRP++S+SVNKV Q+MQNP + HWK VK
Sbjct: 1206 PTGLKLRVGDGDPVEDLHGYRSTVGALQYVTITRPELSFSVNKVCQFMQNPTEEHWKVVK 1265

Query: 624  RILRYLAGTIDHGLLFTKGHLHRINTFADADWGSDLDDRRSTSGYCVYFGSNLVSWSAKK 445
            RILRYL GT+ HGL   K     +  F DADW SDLDDRRSTSG+CV+ G NL+SW +KK
Sbjct: 1266 RILRYLQGTLQHGLHLKKSSNLDLIGFCDADWASDLDDRRSTSGHCVFLGPNLISWQSKK 1325

Query: 444  QAVVSRSSTEAEYRSIASATCDVFWIHSLLQEIGFQIHKPTTVWTDNLGAVSLSVNPVFH 265
            Q +VSRSS E EYRS+A    ++ W+ SLL E+   + KP  VW DNL  V LS NPV H
Sbjct: 1326 QHIVSRSSIEIEYRSLAGLVAEITWLRSLLSELQLPLAKPPLVWCDNLSTVLLSANPVLH 1385

Query: 264  SRTKHFELDLHFIREKVAKQQISVQHIPGSEQVADILTKPLTGQFFVRLRNKLNVVSKSS 85
            +RTKH ELDL+F+REKV ++++ V+H+P ++Q+AD+LTK ++   F+  R+KL + + S+
Sbjct: 1386 ARTKHIELDLYFVREKVIRKEVEVRHVPSADQLADVLTKTVSSTQFIEFRHKLRIENLST 1445

Query: 84   LELRGPNR 61
            L LRG  R
Sbjct: 1446 LSLRGDVR 1453



 Score =  325 bits (834), Expect = 1e-87
 Identities = 166/358 (46%), Positives = 232/358 (64%), Gaps = 5/358 (1%)
 Frame = -2

Query: 3093 VQDQKSGVILLKGNVENGLYKFHFSN-----SQSPLSRISPSCSANSKNLSVNHLQLQKS 2929
            V+DQ +  +L+ G V +GLY F  S+     +QS LS+ SPS  A+S +  V    L  S
Sbjct: 463  VKDQVTQAVLMVGKVRDGLYAFDSSHLALRPTQS-LSK-SPSVVASSFSSKVCTTSLS-S 519

Query: 2928 AIDVAIWHSRLGHVPLDIIKKVFQGCNFPFNDNNSQFICPSCCKAKSHIQPFPTSTTEHN 2749
              D  +WH RLGH     IK V   CN    +      C SCC  K H  PF  S T + 
Sbjct: 520  TFD--LWHKRLGHPSAATIKNVLSKCNVAHINKMDSNFCSSCCLGKIHRFPFSLSHTTYT 577

Query: 2748 KLLELIHTDLWGPAPLKSNNGYAYYISFIDHASRYTWIYLLKNKSDTSKAFLHFKNLAEN 2569
            K LELIH DLWGP  + SN+GY YYI F+D  SR++WI+LL+NKS+  K F++FK   E 
Sbjct: 578  KPLELIHLDLWGPTLVLSNSGYRYYIHFVDAFSRFSWIFLLRNKSEAIKTFVNFKTQVEL 637

Query: 2568 QCNTRIKAIQSDGGTEYKPLHDILAQNGIIHRISCPYTPQQNGLAERKHRHIIETALSLL 2389
            Q + +IK++Q+D G E++     LA+NGI+HR+SCP+T QQNG+AERKHR I+E  L+LL
Sbjct: 638  QFDLKIKSLQTDWGGEFRAFQSYLAENGIVHRVSCPHTQQQNGVAERKHRTIVEHGLTLL 697

Query: 2388 AHSSVPQSYWDDAVTSAVFLINRMPSKVLKYKSPYEVFTGHKPNYSFLKVFGCLCYPHLR 2209
              +S+P  +WD++  + V+L NR+P+ +L +K P EV     P+YSFLKVFGC C+P+LR
Sbjct: 698  HTASLPLKFWDESFRTVVYLSNRLPTAILHHKCPIEVLFKSIPDYSFLKVFGCSCFPNLR 757

Query: 2208 PYNKHKLEFRSTPGVFIGYSLQYKGYKVLLPNKKIVITRNVVFDEDKFPFQTTVAGSN 2035
            PYN HKL++RS    F+GYSL++KGYK +  N ++ I+ +V+F+E  FP+  T+  S+
Sbjct: 758  PYNTHKLQYRSEECTFLGYSLKHKGYKCMSSNGRVYISHDVIFNETSFPYSKTIQVSS 815



 Score = 99.4 bits (246), Expect = 3e-17
 Identities = 67/215 (31%), Positives = 113/215 (52%)
 Frame = -1

Query: 4177 ITTKLTEVNFLVWKQQILAAINGYGLEGYLTGEISAPDQLTSEKTLNPAYGVWKRQDQVI 3998
            ++ KL   NFL+WKQQI++AI GYGL+ ++  +       + EK  +      ++Q +  
Sbjct: 31   LSVKLDNKNFLIWKQQIVSAIRGYGLQKFVFSDDEVQFNFSPEKMRD-----LEKQLRNS 85

Query: 3997 ASWXXXXXXXXXXITTVGFTTSKQIWDALTEGFASQSRAKIMQYKLQLQNLRKGTNSMRE 3818
            +S             ++GF+        L + FASQ+RAK  Q+K QLQ+ +KG +++ E
Sbjct: 86   SS-----GNNRINYCSLGFSHLFLSQYFLEQYFASQTRAKAKQFKTQLQHTKKGGSTIDE 140

Query: 3817 YLNRAKVCCDMLATIGYKLSEEEQIMYILTGLNAEYNAVVVSINSRVEPYTLMEVHAXXX 3638
            YL + KVC D LA++G  LS ++ +  IL GL  +Y + V S+  R + +++ E+ A   
Sbjct: 141  YLAKIKVCVDSLASVGVSLSTKDHVESILDGLPNDYESFVTSVILRNDDFSVEEIEALLM 200

Query: 3637 XXXXXXXXXENTVSQINSEGSLPSANVATNESNSK 3533
                      N++       S PSA+VA++ +  K
Sbjct: 201  AHESRVEKNNNSLD------SSPSAHVASSNAVEK 229



 Score = 62.4 bits (150), Expect = 6e-06
 Identities = 41/113 (36%), Positives = 65/113 (57%), Gaps = 4/113 (3%)
 Frame = -1

Query: 3412 QPRCQICFIPGHSAAKCFHRANLNF-VPTSNNNSFYTQNQSTNHNSNDPHANRYGSFSAN 3236
            +P CQ+C   GH  A+C++R +  F VP         QN S+ ++S  P A  Y SFS  
Sbjct: 307  KPACQLCGKIGHVVAQCYYRFDHTFQVP---------QNLSSRNSS--PRA--YYSFSPQ 353

Query: 3235 VAS---TSQDHAQETCWFPDSGATNHLTYDLGNLNLAHDYQGTDRIQIGNGSG 3086
            V     TS+  + +  W+PDSGA+NH+T +  NL  + ++ G +++ +GNG+G
Sbjct: 354  VNGVIPTSEVFSDDN-WYPDSGASNHVTPNPENLMKSAEFAGQNQVHVGNGTG 405


>gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1073

 Score =  575 bits (1482), Expect = e-179
 Identities = 296/546 (54%), Positives = 385/546 (70%), Gaps = 4/546 (0%)
 Frame = -2

Query: 1722 VNQNQGHHMITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNAAMKKEYAALLKNQ 1543
            ++ +  H M TR+K G +KP+    +L T +EP + K+AL  P W+AAM+ EY ALL N 
Sbjct: 529  IHPHNVHPMTTRAKDGIVKPRLQPTLLLTQVEPKTTKQALSNPTWSAAMQTEYNALLHNN 588

Query: 1542 TWSLFPISQLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPV 1363
            TWSL P   LPP +  IGCKW+F++K N +GSV K+KARLVAKGF Q  G DY ETFSPV
Sbjct: 589  TWSLVP---LPPHRTAIGCKWVFRVKENPNGSVQKYKARLVAKGFNQQFGFDYHETFSPV 645

Query: 1362 IKPATIKIILSLALTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKL 1183
            IKP T+++IL+LALT+ W I+QLD++NAFLNG ++ E+YM+Q PGF  +    + +VCKL
Sbjct: 646  IKPVTVRLILTLALTHRWPIQQLDVNNAFLNGTLEEEVYMQQPPGFEAS---DKNLVCKL 702

Query: 1182 HKSLYGLKQASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVTGS 1003
            HK++YGLKQA RAW  KL   L    F  SK D SLF  +  ++ I+IL YVDDII+TG+
Sbjct: 703  HKAIYGLKQAPRAWFDKLKSTLLQLNFYASKCDPSLFIYSQGNNVIYILVYVDDIIITGN 762

Query: 1002 CATAIQTVIDDLHRVFSLKDLGNLSYFLGIQVDYTPNG-LLLTQQKYIQDLLDSAGMKGA 826
             ++ + T++  LH +FSLKDLG+L +FLGI+V   P+G L+LTQ KYI+DLL+   M+G+
Sbjct: 763  NSSILHTLVSQLHSIFSLKDLGDLDFFLGIEVKSQPDGSLILTQSKYIRDLLNRTDMEGS 822

Query: 825  KGLSSPMVSRPLLSKHDGNPISDASLYRKIVGSLQYATMTRPDISYSVNKVSQYMQNPLD 646
            K +SSPM+S   LSK       DASLYR +VG+LQYAT+TRP+IS+SVNKV Q+M +PL 
Sbjct: 823  KPISSPMISGSKLSKVGSEDFLDASLYRSVVGALQYATITRPEISFSVNKVCQFMSHPLT 882

Query: 645  SHWKAVKRILRYLAGTIDHGLLF---TKGHLHRINTFADADWGSDLDDRRSTSGYCVYFG 475
             HW AVKRILRYL GT   GL     +      I+ + DADW SD DDRRSTSG  ++ G
Sbjct: 883  HHWAAVKRILRYLKGTTSWGLRLQPASSSSSLSIHAYCDADWASDPDDRRSTSGASIFLG 942

Query: 474  SNLVSWSAKKQAVVSRSSTEAEYRSIASATCDVFWIHSLLQEIGFQIHKPTTVWTDNLGA 295
             NLVSW +KKQ VV+RSSTEAEYRS+A AT +V WI +LL E+    H    ++ DNL  
Sbjct: 943  PNLVSWWSKKQTVVARSSTEAEYRSLALATTEVTWIQTLLSELKV-THSTPIIFCDNLST 1001

Query: 294  VSLSVNPVFHSRTKHFELDLHFIREKVAKQQISVQHIPGSEQVADILTKPLTGQFFVRLR 115
            V+L+ NPV H+RTKH ELDL F+REKVA + + V H+P  +Q AD+LTK L+   F  LR
Sbjct: 1002 VALAHNPVLHARTKHMELDLFFVREKVAAKCLQVVHVPAIDQCADVLTKALSPTRFCELR 1061

Query: 114  NKLNVV 97
            +KL VV
Sbjct: 1062 SKLQVV 1067



 Score =  312 bits (800), Expect = 6e-85
 Identities = 155/363 (42%), Positives = 221/363 (60%), Gaps = 10/363 (2%)
 Frame = -2

Query: 3096 MVQDQKSGVILLKGNV-ENGLYKFHFSNSQSPLSRISPSCSANSKNLSVNHLQLQK---- 2932
            +V+ Q +  +LL+G+V  +GLYKF             P+   N    SV   QL +    
Sbjct: 107  LVKSQDTNEVLLQGSVGSDGLYKF-------------PALLPNPSTQSVQQQQLARIFSV 153

Query: 2931 -----SAIDVAIWHSRLGHVPLDIIKKVFQGCNFPFNDNNSQFICPSCCKAKSHIQPFPT 2767
                 S +  A WHSRLGH  +D++K V +  N     NN    C  CC  KSH  P   
Sbjct: 154  NTAATSPVSFATWHSRLGHPNVDVMKHVSRNYNIQLVSNNKSNFCTPCCLGKSHRLPSNL 213

Query: 2766 STTEHNKLLELIHTDLWGPAPLKSNNGYAYYISFIDHASRYTWIYLLKNKSDTSKAFLHF 2587
            S T +N   +L+++DLWGPAP+ S  GY YY++F+D  +R+TWIYLLK+K+ T   F  F
Sbjct: 214  SRTIYNTPFDLVYSDLWGPAPVTSTCGYQYYVTFVDAHTRFTWIYLLKSKAQTFNVFKQF 273

Query: 2586 KNLAENQCNTRIKAIQSDGGTEYKPLHDILAQNGIIHRISCPYTPQQNGLAERKHRHIIE 2407
              + +NQ +  IKA+Q+D G EY+     L + GI HR+ CP+T  QNG+AERKHRHI+E
Sbjct: 274  HAMVKNQYHHPIKALQTDWGGEYRSFTTYLNEVGIQHRLICPHTHHQNGVAERKHRHIVE 333

Query: 2406 TALSLLAHSSVPQSYWDDAVTSAVFLINRMPSKVLKYKSPYEVFTGHKPNYSFLKVFGCL 2227
              L+L+A + +P  +WD +  +AV+LINR+PS  ++   PY       P+Y  L++FGC 
Sbjct: 334  LGLTLMAQAELPMQFWDHSFLTAVYLINRLPSSSIQNAVPYHKLFHQPPDYLSLRIFGCS 393

Query: 2226 CYPHLRPYNKHKLEFRSTPGVFIGYSLQYKGYKVLLPNKKIVITRNVVFDEDKFPFQTTV 2047
            C+PHLRPYNKHKL+FRS   VF+GYS  +KGYK L  + ++ I+++VVF+E KFP++   
Sbjct: 394  CFPHLRPYNKHKLQFRSQECVFLGYSTSHKGYKCLAADGRLYISKDVVFNETKFPYKDLF 453

Query: 2046 AGS 2038
            + S
Sbjct: 454  SSS 456


>gb|KYP44486.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 513

 Score =  551 bits (1420), Expect = e-178
 Identities = 284/522 (54%), Positives = 367/522 (70%), Gaps = 12/522 (2%)
 Frame = -2

Query: 1698 MITRSKTGNLKPKTYAAVLQTNL-------EPHSYKEALRIPEWNAAMKKEYAALLKNQT 1540
            MITR+K G  KPK Y  V  T         EP S KEA+ IP W   M +EY AL+KN T
Sbjct: 1    MITRAKAGIHKPKAYNIVTTTPKLDLNPFHEPRSIKEAMAIPHWKKTMLEEYKALMKNNT 60

Query: 1539 WSLFPISQLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVI 1360
            W L   + LP  + LIGC+W+FK+K NSDGS+ +HKARLVAKGF Q +G D++ETFSPV+
Sbjct: 61   WIL---TTLPAGRNLIGCRWVFKVKTNSDGSINRHKARLVAKGFHQRDGFDFSETFSPVV 117

Query: 1359 KPATIKIILSLALTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKLH 1180
            KPATI+IILS+ ++ SW +RQ+DI NAFLNGD+  ++YM Q PGF+QT    + +VCKL 
Sbjct: 118  KPATIRIILSIVVSRSWDMRQIDIANAFLNGDLQEDIYMAQPPGFIQTD---KSLVCKLQ 174

Query: 1179 KSLYGLKQASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVTGSC 1000
            KSLYGLKQA RAW  +L   L   GF  +K D+SLF R  +D   FIL YVDDII+ GS 
Sbjct: 175  KSLYGLKQAPRAWFERLHLSLSRIGFYYAKMDSSLFIRFHKDHITFILVYVDDIIICGSS 234

Query: 999  ATAIQTVIDDLHRVFSLKDLGNLSYFLGIQVDYTPNG-LLLTQQKYIQDLLDSAGMKGAK 823
             +AI +V++ L   F ++DLG  +YFLGIQVD  PN  L+LTQ KYI DLL+   M  AK
Sbjct: 235  TSAISSVVEQLQSEFPVRDLGFPNYFLGIQVDQLPNRTLMLTQTKYINDLLNRTNMHMAK 294

Query: 822  GLSSPMVSRPLLSKHDGNPISDASLYRKIVGSLQYATMTRPDISYSVNKVSQYMQNPLDS 643
             + +PMV+   L   +G    + + YR IVGSLQY T+TRP+I++SVNKV QYMQ P + 
Sbjct: 295  PIKTPMVAGLKLQPLEGTAHYEITQYRSIVGSLQYITITRPEIAFSVNKVCQYMQAPRNP 354

Query: 642  HWKAVKRILRYLAGTIDHGLLFTKGHLHRINTFADADWGSDLDDRRSTSGYCVYFGSNLV 463
            HW AVKRILRYL GT++  L   K     I  F DADWGS+L+DR+ST+GY +Y G+N +
Sbjct: 355  HWMAVKRILRYLCGTLNTSLHLIKSPDFSIKGFCDADWGSNLEDRKSTTGYVIYLGANPI 414

Query: 462  SWSAKKQAVVSRSSTEAEYRSIASATCDVFWIHSLLQEIGFQIHKPTT----VWTDNLGA 295
            SWS+KKQ  VSRS+TEAEYRSIA+ T ++ W+ +LL    +++H PTT    ++ DNL A
Sbjct: 415  SWSSKKQQAVSRSTTEAEYRSIAAITAEMTWLKNLL----YELHIPTTSKPIIYCDNLSA 470

Query: 294  VSLSVNPVFHSRTKHFELDLHFIREKVAKQQISVQHIPGSEQ 169
            V LS NP+ HS+TKHFE+DL+F+R++V K+Q++VQHIP SEQ
Sbjct: 471  VLLSTNPILHSKTKHFEIDLYFVRDQVQKKQLAVQHIPSSEQ 512


>gb|KYP64199.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1408

 Score =  579 bits (1492), Expect = e-177
 Identities = 295/545 (54%), Positives = 387/545 (71%), Gaps = 4/545 (0%)
 Frame = -2

Query: 1704 HHMITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNAAMKKEYAALLKNQTWSLFP 1525
            H MITRSK G L+P+    +L +N+EP + K AL  P W +AM+ E  AL  N TW+L  
Sbjct: 867  HPMITRSKNGILQPRLNPTLLLSNVEPKTVKSALTDPHWLSAMQAELTALHDNHTWTLV- 925

Query: 1524 ISQLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVIKPATI 1345
               LPP +K IGCKW+F+LK N DGS+ K+KARLVAKGF Q  G+D++ETFSPV+KP TI
Sbjct: 926  --DLPPGRKSIGCKWVFRLKENPDGSINKYKARLVAKGFHQQPGVDFSETFSPVVKPVTI 983

Query: 1344 KIILSLALTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSLYG 1165
            +I+LSLA+T  W +RQLDI+NAFLNG ++ ++YM Q PGF++   + + +VCKLHKSLYG
Sbjct: 984  RIVLSLAVTFQWPLRQLDINNAFLNGMLEEDIYMSQPPGFIEP--NSKHLVCKLHKSLYG 1041

Query: 1164 LKQASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVTGSCATAIQ 985
            LKQA RAW  +LT VL   GF  SK D SLF  ++  + +++L YVDDII+TG+ ++ +Q
Sbjct: 1042 LKQAPRAWFDRLTSVLLKLGFHKSKCDPSLFIFSTPSAIVYMLIYVDDIILTGNSSSLMQ 1101

Query: 984  TVIDDLHRVFSLKDLGNLSYFLGIQVDYTPNG-LLLTQQKYIQDLLDSAGMKGAKGLSSP 808
              I+ LH  FSLKDLG L YFLGI+V    NG LLL+Q KYI DLL    M+ +KG+S+P
Sbjct: 1102 QFINHLHATFSLKDLGTLDYFLGIEVKSLSNGRLLLSQHKYISDLLTKVKMEDSKGISTP 1161

Query: 807  MVSRPLLSKHDGNPISDASLYRKIVGSLQYATMTRPDISYSVNKVSQYMQNPLDSHWKAV 628
            M+    L+K  G   +D +LYR +VG+LQYAT+TRP+I++SVNKVSQ+M +P++ HWK V
Sbjct: 1162 MIGGQQLAK-TGTLFNDPTLYRSVVGALQYATITRPEIAFSVNKVSQFMCSPMEEHWKVV 1220

Query: 627  KRILRYLAGTIDHGLLFT---KGHLHRINTFADADWGSDLDDRRSTSGYCVYFGSNLVSW 457
            KRILRYL GT+ HGL+FT         +  F DADW +D +DRRSTS  C+Y G NLVSW
Sbjct: 1221 KRILRYLKGTLKHGLVFTPARSSSSFNLTAFTDADWAADPNDRRSTSAACIYLGPNLVSW 1280

Query: 456  SAKKQAVVSRSSTEAEYRSIASATCDVFWIHSLLQEIGFQIHKPTTVWTDNLGAVSLSVN 277
             +KKQ +V+RSSTEAEYR++A A  +V WI SLLQE+  + + P  V  DN   V+LS N
Sbjct: 1281 WSKKQLLVARSSTEAEYRALAQAVTEVLWIQSLLQELKIRFNTP-MVLCDNQSTVALSHN 1339

Query: 276  PVFHSRTKHFELDLHFIREKVAKQQISVQHIPGSEQVADILTKPLTGQFFVRLRNKLNVV 97
            PV HSR+KH ELD+ F+REKV  + + V HIP   Q AD+LTK L+ + F+ LR+KLNV 
Sbjct: 1340 PVLHSRSKHMELDIFFVREKVISKALVVSHIPSQHQYADLLTKALSPKRFLSLRSKLNVA 1399

Query: 96   SKSSL 82
              S +
Sbjct: 1400 DPSDM 1404



 Score =  297 bits (761), Expect = 1e-78
 Identities = 152/352 (43%), Positives = 223/352 (63%), Gaps = 7/352 (1%)
 Frame = -2

Query: 3093 VQDQKSGVILLKGNV-ENGLYKFH--FSNSQSPLSRISPSCSANSKNLSVNHLQLQKSAI 2923
            V+ Q     LL+G++ E+GLY FH   +   S  + I  +   +  +  +   +   S +
Sbjct: 436  VKSQDLNETLLEGHLGEDGLYHFHPHLATKTSSNTNIEQNLIFSKPDPCIFLSEKCNSVV 495

Query: 2922 DVAI--WHSRLGHVPLDIIKKVFQGCNF--PFNDNNSQFICPSCCKAKSHIQPFPTSTTE 2755
                  WH RLGH   D + +  Q CN   P  +  S F C SCC AKSH  P   STT 
Sbjct: 496  PNTYKQWHLRLGHPHHDSLTRALQTCNIRLPTVNKISDF-CDSCCIAKSHRLPSHPSTTI 554

Query: 2754 HNKLLELIHTDLWGPAPLKSNNGYAYYISFIDHASRYTWIYLLKNKSDTSKAFLHFKNLA 2575
            ++K LEL+  D+WGPA L+S+ GY Y+++ +D  ++Y WIYLL+ KSD    F +FK LA
Sbjct: 555  YSKPLELVFLDVWGPASLESSCGYLYFLTCVDACTKYVWIYLLRRKSDVFSNFQNFKALA 614

Query: 2574 ENQCNTRIKAIQSDGGTEYKPLHDILAQNGIIHRISCPYTPQQNGLAERKHRHIIETALS 2395
            E Q    +K++Q+DGG E++ L     Q GI+HR++CPYT  QNG  ER+HRHI+E  L+
Sbjct: 615  EKQFQLPLKSVQTDGGGEFRALISFFQQEGILHRLTCPYTHHQNGTVERRHRHIVELGLA 674

Query: 2394 LLAHSSVPQSYWDDAVTSAVFLINRMPSKVLKYKSPYEVFTGHKPNYSFLKVFGCLCYPH 2215
            +L HS++P ++WD A  +A +LINR+PS  + ++SPY++     P+Y+FLKVFGC C+P 
Sbjct: 675  MLHHSTLPLNFWDHAFLTATYLINRLPSSSVGFQSPYKLIHHKDPDYTFLKVFGCSCFPL 734

Query: 2214 LRPYNKHKLEFRSTPGVFIGYSLQYKGYKVLLPNKKIVITRNVVFDEDKFPF 2059
            LRPYN+HKL+ RS   VF+GYS  +KGYK L  + +I I+++V+F+E +FP+
Sbjct: 735  LRPYNQHKLQPRSEECVFLGYSPLHKGYKCLSKSGRIYISKDVIFNEGRFPY 786



 Score = 89.4 bits (220), Expect = 4e-14
 Identities = 50/161 (31%), Positives = 80/161 (49%), Gaps = 4/161 (2%)
 Frame = -1

Query: 4147 LVWKQQILAAINGYGLEGYLTGEISAPDQLTSE----KTLNPAYGVWKRQDQVIASWXXX 3980
            + W+QQ+ A I  + LE ++         LT E      +NP Y  W R+D ++ SW   
Sbjct: 1    MTWQQQVTAVIRAHDLERFVVNPKIPLKFLTPEDRDANLVNPEYTAWDRKDSLLVSWLLA 60

Query: 3979 XXXXXXXITTVGFTTSKQIWDALTEGFASQSRAKIMQYKLQLQNLRKGTNSMREYLNRAK 3800
                      V    S QIWD + + F S ++ K  Q +L+L+ ++KGT S  +YL R  
Sbjct: 61   TLSESIQARVVSCRHSYQIWDLVFQHFQSLTKIKATQLRLELRTIKKGTRSCSDYLLRIS 120

Query: 3799 VCCDMLATIGYKLSEEEQIMYILTGLNAEYNAVVVSINSRV 3677
               + LA+IG  +S  E    IL GL  EY++++ ++ + V
Sbjct: 121  TIVETLASIGSPISPREHAECILGGLPPEYDSLISTVTAFV 161


>gb|KHN21230.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Glycine soja]
          Length = 1429

 Score =  579 bits (1493), Expect = e-177
 Identities = 294/546 (53%), Positives = 381/546 (69%), Gaps = 5/546 (0%)
 Frame = -2

Query: 1704 HHMITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNAAMKKEYAALLKNQTWSLFP 1525
            HHM+TRSKTG+LKP  +  +  T  EP + ++AL    W  AM++EY AL  N+TWSL P
Sbjct: 890  HHMLTRSKTGHLKPPLFPTINLTTTEPTTVQQALSSIHWTEAMQQEYQALQANKTWSLVP 949

Query: 1524 ISQLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVIKPATI 1345
               LPP K+ IGCKWIF++K N DG++ K+KARLVAKGF Q  G DY++T+SPV+KP T+
Sbjct: 950  ---LPPHKRAIGCKWIFRIKENPDGTINKYKARLVAKGFNQKYGQDYSDTYSPVVKPITV 1006

Query: 1344 KIILSLALTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQ-MVCKLHKSLY 1168
            + +L++ALT+ W + QLD++NAFLNG +  ++YM+Q  GF+Q    GE  +VCKLHK++Y
Sbjct: 1007 RTVLTIALTSKWPLIQLDVNNAFLNGQLHEDVYMQQPQGFIQ----GESTLVCKLHKAIY 1062

Query: 1167 GLKQASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVTGSCATAI 988
            GLKQA RAW   LT  L SFGF  SK D SL   N     + IL YVDDII+TGS  TAI
Sbjct: 1063 GLKQAPRAWYESLTNTLISFGFQQSKCDPSLLIFNKHGCCLLILIYVDDIIITGSSNTAI 1122

Query: 987  QTVIDDLHRVFSLKDLGNLSYFLGIQVDYTPNGLL-LTQQKYIQDLLDSAGMKGAKGLSS 811
              +++ L+  FSLK LG L YFLGI+   TP+G L L+Q KYI+D+L  AGM+  KG+S+
Sbjct: 1123 NLIVNKLNATFSLKQLGTLEYFLGIECKLTPSGALHLSQAKYIRDILHRAGMEDCKGIST 1182

Query: 810  PMVSRPLLSKHDGNPISDASLYRKIVGSLQYATMTRPDISYSVNKVSQYMQNPLDSHWKA 631
            P+ +   LSK   +P  + +LYR IVG+LQYAT+TRP++ YSV+KV Q+   PL SHW A
Sbjct: 1183 PLPANLKLSKTGADPFDNPTLYRSIVGALQYATITRPELGYSVSKVCQFFAQPLVSHWSA 1242

Query: 630  VKRILRYLAGTIDHGLLF---TKGHLHRINTFADADWGSDLDDRRSTSGYCVYFGSNLVS 460
            VKRILRYL G+IDHGL     T      IN F DADW SD+DDRRSTSG C++FG NLVS
Sbjct: 1243 VKRILRYLKGSIDHGLTLLPATTSAPLSINAFCDADWASDIDDRRSTSGACIFFGPNLVS 1302

Query: 459  WSAKKQAVVSRSSTEAEYRSIASATCDVFWIHSLLQEIGFQIHKPTTVWTDNLGAVSLSV 280
            W +KKQ +V++SS EAEYRS+A A  +V W+ SLL E+   I  P  ++ DN  AV++S 
Sbjct: 1303 WWSKKQTLVAKSSAEAEYRSLAHAASEVLWLQSLLHELKVPI-PPPVIYCDNQSAVAISH 1361

Query: 279  NPVFHSRTKHFELDLHFIREKVAKQQISVQHIPGSEQVADILTKPLTGQFFVRLRNKLNV 100
            NPV HSRTKH ELD+ F+REKV  + + V +IP   QVADILTK L+   F   R+KL V
Sbjct: 1362 NPVLHSRTKHMELDIFFVREKVLNKSLVVSYIPAQLQVADILTKSLSKHLFYNFRSKLRV 1421

Query: 99   VSKSSL 82
            +S + L
Sbjct: 1422 LSTAEL 1427



 Score =  308 bits (789), Expect = 5e-82
 Identities = 170/353 (48%), Positives = 224/353 (63%), Gaps = 4/353 (1%)
 Frame = -2

Query: 3096 MVQDQKSGVILLKGNVEN-GLYKFHFSNSQSPLSRISPSCSANSKNLSVNHLQLQKSAID 2920
            +++ Q +  ILL+G ++  GLY  H S S +  S  S   S +S   S N L  Q     
Sbjct: 460  VMKSQDNDQILLQGKLDKAGLYPIH-SQSSTTSSLSSRHHSVHSIVTSHNDLYFQ----- 513

Query: 2919 VAIWHSRLGHVPLDIIKKVFQGCNFP-FNDNNSQFICPSCCKAKSHIQPFPTSTTEHNKL 2743
               WH RLGH  LD +  V + CN P FN N + F C SCC  KSH  P   S + +N  
Sbjct: 514  ---WHHRLGHTNLDTMNNVLKSCNMPTFNKNKTDF-CISCCLGKSHRLPSQLSQSTYNSP 569

Query: 2742 LELIHTDLWGPAPLKSNNGYAYYISFIDHASRYTWIYLLKNKSDTSKAFLHFKNLAENQC 2563
            LELI+ DLWGPAP++S+ GY YYISFID  S+Y W+Y L +KS+T   F  FK LAE Q 
Sbjct: 570  LELIYCDLWGPAPMQSSMGYKYYISFIDAFSKYIWVYFLHDKSETLTIFKQFKALAELQL 629

Query: 2562 NTRIKAIQSDGGTEYKPLHDILAQNGIIHRISCPYTPQQNGLAERKHRHIIETALSLLAH 2383
            NT+IKAIQSD G E++     L+Q GIIHRI CP+T  QNG+ ERKHRHI+E  LSLL+H
Sbjct: 630  NTKIKAIQSDWGGEFRSFTSYLSQLGIIHRIICPHTHHQNGVVERKHRHIVEMGLSLLSH 689

Query: 2382 SSVPQSYWDDAVTSAVFLINRMPSKVLKYKSPYEVFTGHKPNYSFLKVFGCLCYPHLRPY 2203
            SS+P  YWD A  +AV++INR+P+    +  P +V   + P+Y+FL+ FGC CYP L PY
Sbjct: 690  SSLPYHYWDHAFHTAVYIINRLPAS-HNHCIPLKVLFNNVPDYNFLRAFGCACYPLLTPY 748

Query: 2202 NKHKLEFRSTPGVFIGYSLQYKGYKVLLPNK--KIVITRNVVFDEDKFPFQTT 2050
            N  K ++RS   +F+GYS   +GYK  L NK  +I I+++V+F+E  FP+Q T
Sbjct: 749  NNPKFQYRSKECIFLGYST--RGYK-CLDNKSGRIYISKDVLFNEKHFPYQIT 798



 Score =  104 bits (259), Expect = 1e-18
 Identities = 60/183 (32%), Positives = 102/183 (55%), Gaps = 6/183 (3%)
 Frame = -1

Query: 4177 ITTKLTEVNFLVWKQQILAAINGYGLEGY-LTGEISAPDQLTSEKTL-----NPAYGVWK 4016
            I+ KL   N+LVW QQI   +  + L  + +T EI  P Q  SE        NPA+  W+
Sbjct: 6    ISVKLDATNYLVWLQQIEPVLRAHRLHRFCVTPEI--PPQYASEHDRLANIENPAFSNWE 63

Query: 4015 RQDQVIASWXXXXXXXXXXITTVGFTTSKQIWDALTEGFASQSRAKIMQYKLQLQNLRKG 3836
             QDQ++ +W           + +G   + Q+W+ + + F S+++A+  Q + QL+  +KG
Sbjct: 64   LQDQLLLAWLQSSLSPAILPSVIGCKHTFQLWENIHQSFQSKTKAQARQLRTQLRTTKKG 123

Query: 3835 TNSMREYLNRAKVCCDMLATIGYKLSEEEQIMYILTGLNAEYNAVVVSINSRVEPYTLME 3656
            ++S+ E+L + K   D L +IG  +S ++Q+  IL GL  E+ ++V  INS++E + L E
Sbjct: 124  SSSISEFLAKIKHISDSLTSIGESVSLQDQLDVILEGLPNEFESLVTLINSKIEWFDLEE 183

Query: 3655 VHA 3647
            + A
Sbjct: 184  IRA 186


>gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1408

 Score =  575 bits (1482), Expect = e-176
 Identities = 296/546 (54%), Positives = 385/546 (70%), Gaps = 4/546 (0%)
 Frame = -2

Query: 1722 VNQNQGHHMITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNAAMKKEYAALLKNQ 1543
            ++ +  H M TR+K G +KP+    +L T +EP + K+AL  P W+AAM+ EY ALL N 
Sbjct: 864  IHPHNVHPMTTRAKDGIVKPRLQPTLLLTQVEPKTTKQALSNPTWSAAMQTEYNALLHNN 923

Query: 1542 TWSLFPISQLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPV 1363
            TWSL P   LPP +  IGCKW+F++K N +GSV K+KARLVAKGF Q  G DY ETFSPV
Sbjct: 924  TWSLVP---LPPHRTAIGCKWVFRVKENPNGSVQKYKARLVAKGFNQQFGFDYHETFSPV 980

Query: 1362 IKPATIKIILSLALTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKL 1183
            IKP T+++IL+LALT+ W I+QLD++NAFLNG ++ E+YM+Q PGF  +    + +VCKL
Sbjct: 981  IKPVTVRLILTLALTHRWPIQQLDVNNAFLNGTLEEEVYMQQPPGFEAS---DKNLVCKL 1037

Query: 1182 HKSLYGLKQASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVTGS 1003
            HK++YGLKQA RAW  KL   L    F  SK D SLF  +  ++ I+IL YVDDII+TG+
Sbjct: 1038 HKAIYGLKQAPRAWFDKLKSTLLQLNFYASKCDPSLFIYSQGNNVIYILVYVDDIIITGN 1097

Query: 1002 CATAIQTVIDDLHRVFSLKDLGNLSYFLGIQVDYTPNG-LLLTQQKYIQDLLDSAGMKGA 826
             ++ + T++  LH +FSLKDLG+L +FLGI+V   P+G L+LTQ KYI+DLL+   M+G+
Sbjct: 1098 NSSILHTLVSQLHSIFSLKDLGDLDFFLGIEVKSQPDGSLILTQSKYIRDLLNRTDMEGS 1157

Query: 825  KGLSSPMVSRPLLSKHDGNPISDASLYRKIVGSLQYATMTRPDISYSVNKVSQYMQNPLD 646
            K +SSPM+S   LSK       DASLYR +VG+LQYAT+TRP+IS+SVNKV Q+M +PL 
Sbjct: 1158 KPISSPMISGSKLSKVGSEDFLDASLYRSVVGALQYATITRPEISFSVNKVCQFMSHPLT 1217

Query: 645  SHWKAVKRILRYLAGTIDHGLLF---TKGHLHRINTFADADWGSDLDDRRSTSGYCVYFG 475
             HW AVKRILRYL GT   GL     +      I+ + DADW SD DDRRSTSG  ++ G
Sbjct: 1218 HHWAAVKRILRYLKGTTSWGLRLQPASSSSSLSIHAYCDADWASDPDDRRSTSGASIFLG 1277

Query: 474  SNLVSWSAKKQAVVSRSSTEAEYRSIASATCDVFWIHSLLQEIGFQIHKPTTVWTDNLGA 295
             NLVSW +KKQ VV+RSSTEAEYRS+A AT +V WI +LL E+    H    ++ DNL  
Sbjct: 1278 PNLVSWWSKKQTVVARSSTEAEYRSLALATTEVTWIQTLLSELKV-THSTPIIFCDNLST 1336

Query: 294  VSLSVNPVFHSRTKHFELDLHFIREKVAKQQISVQHIPGSEQVADILTKPLTGQFFVRLR 115
            V+L+ NPV H+RTKH ELDL F+REKVA + + V H+P  +Q AD+LTK L+   F  LR
Sbjct: 1337 VALAHNPVLHARTKHMELDLFFVREKVAAKCLQVVHVPAIDQCADVLTKALSPTRFCELR 1396

Query: 114  NKLNVV 97
            +KL VV
Sbjct: 1397 SKLQVV 1402



 Score =  312 bits (800), Expect = 2e-83
 Identities = 155/363 (42%), Positives = 221/363 (60%), Gaps = 10/363 (2%)
 Frame = -2

Query: 3096 MVQDQKSGVILLKGNV-ENGLYKFHFSNSQSPLSRISPSCSANSKNLSVNHLQLQK---- 2932
            +V+ Q +  +LL+G+V  +GLYKF             P+   N    SV   QL +    
Sbjct: 442  LVKSQDTNEVLLQGSVGSDGLYKF-------------PALLPNPSTQSVQQQQLARIFSV 488

Query: 2931 -----SAIDVAIWHSRLGHVPLDIIKKVFQGCNFPFNDNNSQFICPSCCKAKSHIQPFPT 2767
                 S +  A WHSRLGH  +D++K V +  N     NN    C  CC  KSH  P   
Sbjct: 489  NTAATSPVSFATWHSRLGHPNVDVMKHVSRNYNIQLVSNNKSNFCTPCCLGKSHRLPSNL 548

Query: 2766 STTEHNKLLELIHTDLWGPAPLKSNNGYAYYISFIDHASRYTWIYLLKNKSDTSKAFLHF 2587
            S T +N   +L+++DLWGPAP+ S  GY YY++F+D  +R+TWIYLLK+K+ T   F  F
Sbjct: 549  SRTIYNTPFDLVYSDLWGPAPVTSTCGYQYYVTFVDAHTRFTWIYLLKSKAQTFNVFKQF 608

Query: 2586 KNLAENQCNTRIKAIQSDGGTEYKPLHDILAQNGIIHRISCPYTPQQNGLAERKHRHIIE 2407
              + +NQ +  IKA+Q+D G EY+     L + GI HR+ CP+T  QNG+AERKHRHI+E
Sbjct: 609  HAMVKNQYHHPIKALQTDWGGEYRSFTTYLNEVGIQHRLICPHTHHQNGVAERKHRHIVE 668

Query: 2406 TALSLLAHSSVPQSYWDDAVTSAVFLINRMPSKVLKYKSPYEVFTGHKPNYSFLKVFGCL 2227
              L+L+A + +P  +WD +  +AV+LINR+PS  ++   PY       P+Y  L++FGC 
Sbjct: 669  LGLTLMAQAELPMQFWDHSFLTAVYLINRLPSSSIQNAVPYHKLFHQPPDYLSLRIFGCS 728

Query: 2226 CYPHLRPYNKHKLEFRSTPGVFIGYSLQYKGYKVLLPNKKIVITRNVVFDEDKFPFQTTV 2047
            C+PHLRPYNKHKL+FRS   VF+GYS  +KGYK L  + ++ I+++VVF+E KFP++   
Sbjct: 729  CFPHLRPYNKHKLQFRSQECVFLGYSTSHKGYKCLAADGRLYISKDVVFNETKFPYKDLF 788

Query: 2046 AGS 2038
            + S
Sbjct: 789  SSS 791



 Score = 88.2 bits (217), Expect = 8e-14
 Identities = 56/182 (30%), Positives = 90/182 (49%), Gaps = 4/182 (2%)
 Frame = -1

Query: 4186 SQLITTKLTEVNFLVWKQQILAAINGYGLEGYLTG-EISAPDQLTSEKT---LNPAYGVW 4019
            S  I+ KL   N+L+W QQ+   I G+ L  YL   +I       +++    ++ +Y  W
Sbjct: 37   SHTISEKLDTKNYLLWCQQVEPVIKGHRLHHYLVNPQIPQKFATLADRDAGHISESYLAW 96

Query: 4018 KRQDQVIASWXXXXXXXXXXITTVGFTTSKQIWDALTEGFASQSRAKIMQYKLQLQNLRK 3839
            ++QDQ++ SW             +G  +S Q+WD +   F S   AK  Q + +L++   
Sbjct: 97   EQQDQLLLSWLQSSMSKDMLTRVIGCKSSFQLWDKIHTYFHSHMNAKARQLRNELRSTTL 156

Query: 3838 GTNSMREYLNRAKVCCDMLATIGYKLSEEEQIMYILTGLNAEYNAVVVSINSRVEPYTLM 3659
               S+ EY+ R +   D L  IG  +S +E +  IL GL  EY + V  I+SR +  T+ 
Sbjct: 157  DNLSISEYVLRIQTLVDALTAIGDSVSPKEHLDIILEGLPEEYESTVSLISSRFDLLTID 216

Query: 3658 EV 3653
            EV
Sbjct: 217  EV 218


>gb|KYP46114.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 539

 Score =  545 bits (1405), Expect = e-175
 Identities = 282/539 (52%), Positives = 376/539 (69%), Gaps = 4/539 (0%)
 Frame = -2

Query: 1698 MITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNAAMKKEYAALLKNQTWSLFPIS 1519
            M TRSK+G   P+ + ++   + EP + K+AL  P W +AM++EY AL+ N TW L    
Sbjct: 1    MQTRSKSGFHNPRIHPSLFLAHSEPKTVKQALADPNWFSAMQQEYNALMLNHTWDLV--- 57

Query: 1518 QLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVIKPATIKI 1339
             LP D+K +GCKW+F++K N+DGS+ K KARLVAKGF Q+ G D+ ETFSPVIKP TI+I
Sbjct: 58   SLPSDRKAVGCKWVFRVKENADGSIDKLKARLVAKGFHQVHGFDFHETFSPVIKPITIRI 117

Query: 1338 ILSLALTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSLYGLK 1159
            IL+LALTN+W + QLD++NAFLNG ++  +YM Q PGF + G   + +VCKL+K+LYGLK
Sbjct: 118  ILTLALTNNWNLFQLDVNNAFLNGTLEETIYMVQPPGF-EAG--DKSLVCKLNKALYGLK 174

Query: 1158 QASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVTGSCATAIQTV 979
            QA R W +KL   L  FGF  SK D SLF    +   IFIL YVDDII+TGS +  IQ +
Sbjct: 175  QAPRQWFNKLKLTLTRFGFQASKCDPSLFQYQHQTHTIFILVYVDDIIITGSSSLLIQQI 234

Query: 978  IDDLHRVFSLKDLGNLSYFLGIQVDYTPN-GLLLTQQKYIQDLLDSAGMKGAKGLSSPMV 802
             + L  +FSLK LG+L YFLGI+V + P+  L+LTQ KYI+DLL    +  A G  SPM 
Sbjct: 235  TNQLDSIFSLKQLGSLDYFLGIEVKHLPDKSLVLTQSKYIRDLLFKTNLAEAHGAPSPMF 294

Query: 801  SRPLLSKHDGNPISDASLYRKIVGSLQYATMTRPDISYSVNKVSQYMQNPLDSHWKAVKR 622
            S   LS+   +   D + +R +VG+LQYAT+TRP+IS++VNKV Q+M  PLDSHW AVKR
Sbjct: 295  SNCKLSRSGNDFFHDPTFFRSVVGALQYATLTRPEISFAVNKVCQFMATPLDSHWVAVKR 354

Query: 621  ILRYLAGTIDHGLLFTKGHLH---RINTFADADWGSDLDDRRSTSGYCVYFGSNLVSWSA 451
            IL+YL GT+ +GL      ++    +  F DADW SD+DDRRSTSG  ++FG NL+SW +
Sbjct: 355  ILKYLKGTLSYGLHMQPAAVNGPISLTAFCDADWASDIDDRRSTSGSAIFFGPNLISWWS 414

Query: 450  KKQAVVSRSSTEAEYRSIASATCDVFWIHSLLQEIGFQIHKPTTVWTDNLGAVSLSVNPV 271
            +KQ V++RSSTEAEYRSIA A+ ++ WI +LLQE+      PT +  DN  AV+++ NPV
Sbjct: 415  RKQRVIARSSTEAEYRSIAQASAELTWIQALLQELKVPFSTPTLL-CDNQSAVAIAHNPV 473

Query: 270  FHSRTKHFELDLHFIREKVAKQQISVQHIPGSEQVADILTKPLTGQFFVRLRNKLNVVS 94
            FHS+TKH E+D+ F+R+KV  +Q+ V HIP  +Q AD+LTKPL+   F  L +KL V S
Sbjct: 474  FHSKTKHMEIDVFFVRDKVLSKQLLVYHIPALDQWADLLTKPLSAARFEVLWDKLKVQS 532


>gb|KYP50571.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 553

 Score =  544 bits (1402), Expect = e-175
 Identities = 288/553 (52%), Positives = 370/553 (66%), Gaps = 11/553 (1%)
 Frame = -2

Query: 1698 MITRSKTGNLKPKTYAAVLQTNL------EPHSYKEALRIPEWNAAMKKEYAALLKNQTW 1537
            MITRSK G  KPKTY     T        EP + KEAL IP W  AM +EY AL+ N+TW
Sbjct: 1    MITRSKHGIFKPKTYEVTTPTQKLHDPFKEPKTIKEALAIPNWKQAMDQEYNALIHNKTW 60

Query: 1536 SLFPISQLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVIK 1357
             L   + LP    L+GCKWIFK+K N+DG++ +HKARL+AKGF Q  GLD+TETF PV+K
Sbjct: 61   VL---THLPVGANLVGCKWIFKVKTNADGTINRHKARLMAKGFNQQSGLDFTETFIPVVK 117

Query: 1356 PATIKIILSLALTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKLHK 1177
            P TI+ +L++AL+ +W +RQLDI NAFLNGD+   +YM Q PGF    +  + MVCKL K
Sbjct: 118  PITIRTVLTIALSLNWSLRQLDIANAFLNGDLQETIYMAQPPGFT---NGDKNMVCKLQK 174

Query: 1176 SLYGLKQASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVTGSCA 997
             LYGLKQA RAW  KL   L   GF  +K+D SLFFR +  + I IL YVDD+I++GS  
Sbjct: 175  FLYGLKQAPRAWFQKLHDTLSVLGFNYAKSDCSLFFRITTSNIILILVYVDDLIISGSSQ 234

Query: 996  TAIQTVIDDLHRVFSLKDLGNLSYFLGIQV-DYTPNGLLLTQQKYIQDLLDSAGMKGAKG 820
            T I +V+  L   F  +DLG  +YF GIQV   + N L LTQ KYI DLL  A M  AK 
Sbjct: 235  TEIDSVVTHLQTRFPARDLGFPNYFPGIQVTQMSNNSLHLTQTKYINDLLKRANMVTAKP 294

Query: 819  LSSPM----VSRPLLSKHDGNPISDASLYRKIVGSLQYATMTRPDISYSVNKVSQYMQNP 652
            +++ M    V    L+  D +P  + SLYR IVGSLQY  +TRP+IS+SVNKV Q+MQ P
Sbjct: 295  VTTRMFQFRVVSLKLTNSDKDPCENPSLYRSIVGSLQYLIITRPEISFSVNKVCQFMQEP 354

Query: 651  LDSHWKAVKRILRYLAGTIDHGLLFTKGHLHRINTFADADWGSDLDDRRSTSGYCVYFGS 472
              +HW+AVKRILRYL GT   G++ +K +   I  F DADWG D+DDR+ST+G+CV+ G 
Sbjct: 355  KATHWQAVKRILRYLCGTATTGIVLSKSNNLHIFAFCDADWGVDVDDRKSTTGFCVFLGC 414

Query: 471  NLVSWSAKKQAVVSRSSTEAEYRSIASATCDVFWIHSLLQEIGFQIHKPTTVWTDNLGAV 292
            N +SWS++KQ  VSRS+ EAEYRS+A+ T ++ W+ +LL E+     +   ++ DNL AV
Sbjct: 415  NPISWSSRKQQAVSRSTIEAEYRSLAAVTAEITWMKNLLHELQVPNIRTPKIYCDNLSAV 474

Query: 291  SLSVNPVFHSRTKHFELDLHFIREKVAKQQISVQHIPGSEQVADILTKPLTGQFFVRLRN 112
             L+ NP+ HS+TKHFELDL+F+R+KV K++ISVQHIP  EQ ADI TKPLT   F     
Sbjct: 475  LLAANPILHSKTKHFELDLYFVRDKVQKREISVQHIPSLEQTADIFTKPLTYPSFSSCMY 534

Query: 111  KLNVVSKSSLELR 73
            KL +   S + LR
Sbjct: 535  KLRLHFCSPISLR 547


>gb|KYP32233.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 537

 Score =  541 bits (1395), Expect = e-174
 Identities = 286/538 (53%), Positives = 371/538 (68%), Gaps = 4/538 (0%)
 Frame = -2

Query: 1698 MITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNAAMKKEYAALLKNQTWSLFPIS 1519
            M TR+K G +KP+    +L T++EP + K+AL  P W AAM+ EY ALL N TWSL P  
Sbjct: 1    MTTRAKDGIVKPRLQPTLLLTHVEPKTTKQALSNPTWTAAMQTEYNALLHNGTWSLVP-- 58

Query: 1518 QLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVIKPATIKI 1339
             LPP +  IGCKW+F++K N +G+V K+KA LVAKGF Q  G DY ETFSPVIKP T+++
Sbjct: 59   -LPPHRTAIGCKWVFRVKENPNGTVQKYKACLVAKGFNQQFGFDYHETFSPVIKPVTVRL 117

Query: 1338 ILSLALTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSLYGLK 1159
            IL+LALT+ W I+QLD++NAFLNG ++ E+YM Q PGF  +    + +VCKLHK++YGLK
Sbjct: 118  ILTLALTHHWPIQQLDVNNAFLNGTLEEEVYMTQPPGFEAS---DKCLVCKLHKAIYGLK 174

Query: 1158 QASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVTGSCATAIQTV 979
            QA RAW  KL   L  F F  SK D SLF  +  ++ I+IL YVDDII+T + ++ + T+
Sbjct: 175  QAPRAWFEKLKSTLLQFHFQASKCDPSLFVYSHANNVIYILVYVDDIIITSNNSSILHTL 234

Query: 978  IDDLHRVFSLKDLGNLSYFLGIQVDYTPNG-LLLTQQKYIQDLLDSAGMKGAKGLSSPMV 802
            +  LH VFSLKDLG+L YFLGI+V    +G L+LTQ KYI+DLL+   M+  K +SSPM+
Sbjct: 235  VSQLHSVFSLKDLGDLDYFLGIEVKTQSDGSLILTQSKYIRDLLNRTDMEALKPISSPMI 294

Query: 801  SRPLLSKHDGNPISDASLYRKIVGSLQYATMTRPDISYSVNKVSQYMQNPLDSHWKAVKR 622
                LSK       DASLYR +VG+LQYAT+TR +IS+SVNKV Q+M  PL  H  AVKR
Sbjct: 295  PDSKLSKAGSEDFLDASLYRSVVGALQYATITRLEISFSVNKVCQFMSYPLAHHCSAVKR 354

Query: 621  ILRYLAGTIDHGLLF---TKGHLHRINTFADADWGSDLDDRRSTSGYCVYFGSNLVSWSA 451
            ILRYL GT   GL     +      I+ + DADW SDLDDRRST G  ++   NLVSW +
Sbjct: 355  ILRYLKGTTSWGLHLQPASSSSSLSIHAYCDADWASDLDDRRSTFGASIFLRPNLVSWWS 414

Query: 450  KKQAVVSRSSTEAEYRSIASATCDVFWIHSLLQEIGFQIHKPTTVWTDNLGAVSLSVNPV 271
            KK+ VV+RSST+AEYRS+A AT +V WI +LL E+    H    ++ DNL  V+L+ NP+
Sbjct: 415  KKKTVVARSSTKAEYRSLALATTEVTWIQTLLSELKVN-HSTPIIFCDNLSTVALAHNPI 473

Query: 270  FHSRTKHFELDLHFIREKVAKQQISVQHIPGSEQVADILTKPLTGQFFVRLRNKLNVV 97
             H+RTKH ELDL F+REKVA + + V H+P  +Q AD+LTK L+   F  LR+KL VV
Sbjct: 474  LHARTKHMELDLFFVREKVAAKCLQVVHVPAIDQCADVLTKALSPSRFCVLRSKLQVV 531


>gb|KYP75940.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1403

 Score =  570 bits (1468), Expect = e-174
 Identities = 293/550 (53%), Positives = 380/550 (69%), Gaps = 2/550 (0%)
 Frame = -2

Query: 1704 HHMITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNAAMKKEYAALLKNQTWSLFP 1525
            H MITR+K G  KPK + A      EP S  +AL    W  AM+ EY ALLKN TW L  
Sbjct: 862  HPMITRAKIGVFKPKAFLATS----EPISVAQALDNKHWKQAMQDEYNALLKNHTWDLV- 916

Query: 1524 ISQLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVIKPATI 1345
               LPP +  I CKWIFK K   DGS+ +HKARLVA+GF+Q +GLDYT+TFSPV+KP +I
Sbjct: 917  --SLPPGRTAITCKWIFKNKYKQDGSILRHKARLVARGFSQQQGLDYTDTFSPVVKPVSI 974

Query: 1344 KIILSLALTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGE-QMVCKLHKSLY 1168
            +I+L+LA++  W I Q+D+DNAFLNGD+  ++YM Q  GF    H+G    VCKL K+LY
Sbjct: 975  RIVLALAVSKGWPIHQIDVDNAFLNGDLKEDIYMLQPQGF----HNGAPNTVCKLRKALY 1030

Query: 1167 GLKQASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVTGSCATAI 988
            GLKQA RAW  KLT +L   GF  +++D+SLF   S+ + I+IL YVDDII+T +   AI
Sbjct: 1031 GLKQAPRAWFQKLTLILLQLGFKQARSDSSLFTFTSKVTSIYILIYVDDIIITSNSPAAI 1090

Query: 987  QTVIDDLHRVFSLKDLGNLSYFLGIQVDYT-PNGLLLTQQKYIQDLLDSAGMKGAKGLSS 811
            QT+I  LHR F LKDLG+L YFLGI+V+     G+ L+Q KY++D+LD   M  AK + +
Sbjct: 1091 QTLISTLHRFFPLKDLGSLHYFLGIEVNSDGAGGIHLSQTKYLKDILDKLNMSNAKPVKT 1150

Query: 810  PMVSRPLLSKHDGNPISDASLYRKIVGSLQYATMTRPDISYSVNKVSQYMQNPLDSHWKA 631
            PM     L+        D SLYR ++G+LQY T+TRPDI+Y+VNK+ Q+M +PL+SHWKA
Sbjct: 1151 PMAPSLKLTNDGTAVCPDPSLYRSVIGALQYLTITRPDIAYTVNKLCQFMHHPLESHWKA 1210

Query: 630  VKRILRYLAGTIDHGLLFTKGHLHRINTFADADWGSDLDDRRSTSGYCVYFGSNLVSWSA 451
            VKR+LRYL GT+ HGL + K     I+ + D+DW SD +D RSTSG CVY G N+VSW A
Sbjct: 1211 VKRLLRYLQGTLQHGLHYKKSTDTGIHAYCDSDWASDHEDMRSTSGNCVYLGPNIVSWMA 1270

Query: 450  KKQAVVSRSSTEAEYRSIASATCDVFWIHSLLQEIGFQIHKPTTVWTDNLGAVSLSVNPV 271
            KKQ VVSRSSTEAE+RS+AS   +V +I +LL E+     +P  +W DN GAV LS NPV
Sbjct: 1271 KKQRVVSRSSTEAEFRSLASLVTEVQYIQNLLSELHNSSTQPPLIWCDNQGAVLLSANPV 1330

Query: 270  FHSRTKHFELDLHFIREKVAKQQISVQHIPGSEQVADILTKPLTGQFFVRLRNKLNVVSK 91
             H++TKHFELDL F+RE+VA+ QI V+HIP   QVAD+LTK  +   F+ LR+KL V  +
Sbjct: 1331 LHTKTKHFELDLWFVRERVARGQIQVKHIPARFQVADLLTKAPSSSIFLALRHKLTVDKQ 1390

Query: 90   SSLELRGPNR 61
            S+L L+G  +
Sbjct: 1391 STLSLKGDKK 1400



 Score =  342 bits (878), Expect = 2e-93
 Identities = 164/346 (47%), Positives = 226/346 (65%), Gaps = 1/346 (0%)
 Frame = -2

Query: 3096 MVQDQKSGVILLKGNVENGLYKFHFSNSQSPLSRISPSCSANSKNLSVNHLQLQKSAIDV 2917
            +V+ Q S   LL+GN++NGLY F       P      +  +   N +  ++Q  + + DV
Sbjct: 423  LVKSQDSKETLLRGNLKNGLYVFDEVQILKP-DVYEHTVDSVPTNRTTLYVQRTRKSYDV 481

Query: 2916 AIWHSRLGHVPLDIIKKVFQGCNFPFNDNNSQ-FICPSCCKAKSHIQPFPTSTTEHNKLL 2740
              WH+RL H    I++ V + CN P   N+    +C SCC  KSH  PF  S T +N  L
Sbjct: 482  --WHNRLAHASRKIVQAVMKTCNVPMPINHQDSIVCKSCCIGKSHTLPFSDSYTVYNSPL 539

Query: 2739 ELIHTDLWGPAPLKSNNGYAYYISFIDHASRYTWIYLLKNKSDTSKAFLHFKNLAENQCN 2560
            EL+++D+WGP+   S  G+ YY+ F D  S+YTWIY + NKS+T+  F+HFK++ ENQ  
Sbjct: 540  ELVYSDVWGPSHYASREGFRYYVHFTDAFSKYTWIYFMHNKSETAHHFIHFKSMVENQFG 599

Query: 2559 TRIKAIQSDGGTEYKPLHDILAQNGIIHRISCPYTPQQNGLAERKHRHIIETALSLLAHS 2380
             +IK  QSDGG E+  L  +  +NGI HR+SCP++ QQNG AERKHRHI E  L+LL+ S
Sbjct: 600  HKIKMFQSDGGKEFTCLTKLFNENGITHRLSCPHSHQQNGTAERKHRHITEVGLTLLSSS 659

Query: 2379 SVPQSYWDDAVTSAVFLINRMPSKVLKYKSPYEVFTGHKPNYSFLKVFGCLCYPHLRPYN 2200
             +P  +W DA ++A+ +INR+P+ +L +KSPYEV     P+Y  L+ FGC CYPHLRP+N
Sbjct: 660  GLPHIFWSDAFSTAIHVINRLPTPILGHKSPYEVLFNKIPDYLLLRPFGCACYPHLRPFN 719

Query: 2199 KHKLEFRSTPGVFIGYSLQYKGYKVLLPNKKIVITRNVVFDEDKFP 2062
             HK++FRS+  VFIGYS+Q+KGYK    N KI+I+RNVVFDED FP
Sbjct: 720  SHKMDFRSSQCVFIGYSMQHKGYKCFTTNGKIIISRNVVFDEDTFP 765



 Score =  157 bits (398), Expect = 4e-35
 Identities = 111/371 (29%), Positives = 174/371 (46%), Gaps = 6/371 (1%)
 Frame = -1

Query: 4186 SQLITTKLTEVNFLVWKQQILAAINGYGLEGYLTGEISAPDQLTSEK-----TLNPAYGV 4022
            S  I++KL+E NFL W+QQ  + I GY L+ ++ G +  P Q  +++      L+P Y  
Sbjct: 17   SNPISSKLSEDNFLTWRQQAESTIRGYRLKKHILGAMHVPAQHKTDEDKAKGVLSPEYED 76

Query: 4021 WKRQDQVIASWXXXXXXXXXXITTVGFTTSKQIWDALTEGFASQSRAKIMQYKLQLQNLR 3842
            + +QD ++ SW          +  VG+    QIW+ L   FASQ++A++ Q K+QL+ ++
Sbjct: 77   YDQQDNLLKSWLLESMEPQFKVRMVGYEWCHQIWNNLEIYFASQTKARVKQLKIQLRGIK 136

Query: 3841 KGTNSMREYLNRAKVCCDMLATIGYKLSEEEQIMYILTGLNAEYNAVVVSINSRVEPYTL 3662
            K T ++ +YL   K   + LA IG  L+  E I  I  GL+ EY+  + S+ +R E Y++
Sbjct: 137  K-TTAINQYLLEIKKIVNNLAAIGSPLNTAEHIDAIFDGLSEEYDPFITSVLTRTEEYSV 195

Query: 3661 MEVHAXXXXXXXXXXXXENTVSQINSEGSLP-SANVATNESNSKXXXXXXXXXXXXXXXX 3485
             ++ +            E  + +  +  S+P  AN+A    NS+                
Sbjct: 196  EQIES-------LLMAQEERLEKHKASESVPLQANLAQGSFNSRKQFTNQGRGSNNNGTH 248

Query: 3484 XXXXXXXXXXXXXXXXXXXXXGWRQPRCQICFIPGHSAAKCFHRANLNFVPTSNNNSFYT 3305
                                   +QP CQ+C   GH A  C+HR +  +           
Sbjct: 249  GRGPHRGRGRGRSAQHFGRGN--KQP-CQVCGKIGHIAFHCWHRYDQQYT---------- 295

Query: 3304 QNQSTNHNSNDPHANRYGSFSANVASTSQDHAQETCWFPDSGATNHLTYDLGNLNLAHDY 3125
               + NHN+N  +        A +A  SQ+   +  W+PDSGATNHLT DL NL    DY
Sbjct: 296  -EPNLNHNTNVYNPGNQQQMQAMIAG-SQNMVYDDQWYPDSGATNHLTSDLNNLGSKTDY 353

Query: 3124 QGTDRIQIGNG 3092
             G D+I +GNG
Sbjct: 354  TGQDKIHMGNG 364


>gb|KYP47651.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 538

 Score =  535 bits (1378), Expect = e-171
 Identities = 281/541 (51%), Positives = 366/541 (67%), Gaps = 4/541 (0%)
 Frame = -2

Query: 1698 MITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNAAMKKEYAALLKNQTWSLFPIS 1519
            M TR+K G +KP+    +L T+ EP S K+AL    W AAMK+EY ALL N TW+L    
Sbjct: 1    MTTRAKAGIVKPRLQPTLLLTHTEPKSTKQALANDTWLAAMKQEYNALLNNGTWTLV--- 57

Query: 1518 QLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVIKPATIKI 1339
             LPP+K  IGCKW+F++K N DG+V K+KARLVAKGF Q  G DY ETFSPV+KP TI++
Sbjct: 58   SLPPNKTAIGCKWVFRIKENLDGTVNKYKARLVAKGFHQQFGSDYNETFSPVVKPVTIRL 117

Query: 1338 ILSLALTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSLYGLK 1159
            IL+LALT+ W I+QLD++N FLNG+++ E+YM Q PGF  +    + +V K+HK +YGLK
Sbjct: 118  ILTLALTHHWSIQQLDVNNTFLNGNLEEEVYMSQPPGFESS---DKALVYKIHKEIYGLK 174

Query: 1158 QASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVTGSCATAIQTV 979
            QA RAW  KL   L    F +SK + SLF  +  +  I+IL YVDDII+TG+ ++ ++++
Sbjct: 175  QAPRAWFDKLKATLFQLNFQISKCNPSLFVYSHGNHVIYILVYVDDIIITGNNSSILRSI 234

Query: 978  IDDLHRVFSLKDLGNLSYFLGIQVDYTPNGL-LLTQQKYIQDLLDSAGMKGAKGLSSPMV 802
            I  L+  FSLKDLG L +FLGI+    P+G   LTQ KYI+DLL+   M+ +  +SSPMV
Sbjct: 235  IAQLNSAFSLKDLGRLDFFLGIEAKSNPDGSPTLTQSKYIRDLLNRTNMENSNPISSPMV 294

Query: 801  SRPLLSKHDGNPISDASLYRKIVGSLQYATMTRPDISYSVNKVSQYMQNPLDSHWKAVKR 622
            S   LSK       D +LYR +VG+LQYAT+TRP IS+SVNKV Q+M NPL+ HW A+KR
Sbjct: 295  SGCKLSKTGLKKFIDVTLYRSVVGALQYATITRPKISFSVNKVCQFMSNPLEQHWSAIKR 354

Query: 621  ILRYLAGTIDHGLLFTKGHLH---RINTFADADWGSDLDDRRSTSGYCVYFGSNLVSWSA 451
            ILRYL GT+  GL       +    I  + DADW SD DD RSTSG  ++ G NL+SW +
Sbjct: 355  ILRYLKGTMFPGLHLQPAPSNSPLSICAYRDADWASDPDDGRSTSGASIFVGPNLISWWS 414

Query: 450  KKQAVVSRSSTEAEYRSIASATCDVFWIHSLLQEIGFQIHKPTTVWTDNLGAVSLSVNPV 271
            KKQ VV+RSS EAEYRS+A AT +  WI +LL E+    H P  V+ DN+  VSL+ N V
Sbjct: 415  KKQTVVARSSAEAEYRSLALATAEALWIQTLLSELHVSHHTP-VVYCDNMSTVSLAHNHV 473

Query: 270  FHSRTKHFELDLHFIREKVAKQQISVQHIPGSEQVADILTKPLTGQFFVRLRNKLNVVSK 91
             H+RTKH E+DL F+REKV+   + V H+P  +Q ADILTK L+   F  LR KL +V  
Sbjct: 474  LHARTKHMEMDLFFVREKVSANSLHVVHVPAIDQYADILTKALSPSRFCELRTKLKLVDS 533

Query: 90   S 88
            S
Sbjct: 534  S 534


>gb|KYP67039.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1279

 Score =  553 bits (1424), Expect = e-169
 Identities = 285/541 (52%), Positives = 378/541 (69%), Gaps = 4/541 (0%)
 Frame = -2

Query: 1704 HHMITRSKTGNLKPKTYAAVLQTNLEPHSYKEALRIPEWNAAMKKEYAALLKNQTWSLFP 1525
            H M TRSK+G   P+ + ++   + EP + K+AL  P W +AM++EY AL+ N TW L  
Sbjct: 739  HPMQTRSKSGFHNPRIHPSLFLAHSEPKTVKQALADPNWFSAMQQEYNALMLNHTWDLV- 797

Query: 1524 ISQLPPDKKLIGCKWIFKLKRNSDGSVAKHKARLVAKGFTQMEGLDYTETFSPVIKPATI 1345
               LP D+K +GCKW+F++K N+DGS+ K KARLVAKGF Q+ G D+ ETFSPVIKP TI
Sbjct: 798  --SLPSDRKAVGCKWVFRVKENADGSIDKLKARLVAKGFHQVHGFDFHETFSPVIKPITI 855

Query: 1344 KIILSLALTNSWGIRQLDIDNAFLNGDIDTELYMEQVPGFVQTGHHGEQMVCKLHKSLYG 1165
            +IIL+LALTN+W + QLD++NAFLNG ++  +YM Q PGF + G   + +VCKL+K+LYG
Sbjct: 856  RIILTLALTNNWNLFQLDVNNAFLNGTLEETIYMVQPPGF-EAG--DKSLVCKLNKALYG 912

Query: 1164 LKQASRAWCSKLTKVLQSFGFTMSKADNSLFFRNSRDSHIFILTYVDDIIVTGSCATAIQ 985
            LKQA R W +KL   L  FGF  SK D SLF    +   IFIL YVDDII+TGS +  IQ
Sbjct: 913  LKQAPRQWFNKLKLTLTRFGFQASKCDPSLFQYQHQTHTIFILVYVDDIIITGSSSLLIQ 972

Query: 984  TVIDDLHRVFSLKDLGNLSYFLGIQVDYTPN-GLLLTQQKYIQDLLDSAGMKGAKGLSSP 808
             + + L  +FSLK LG+L YFLGI+V + P+  L+LTQ KYI+DLL    +  A G  SP
Sbjct: 973  QITNQLDSIFSLKQLGSLDYFLGIEVKHLPDKSLVLTQSKYIRDLLFKTNLAEAHGAPSP 1032

Query: 807  MVSRPLLSKHDGNPISDASLYRKIVGSLQYATMTRPDISYSVNKVSQYMQNPLDSHWKAV 628
            M S   LS+   +   D + +R +VG+LQYAT+TRP+IS++VNKV Q+M  PLDSHW AV
Sbjct: 1033 MFSNCKLSRSGNDFFHDPTFFRSVVGALQYATLTRPEISFAVNKVCQFMATPLDSHWVAV 1092

Query: 627  KRILRYLAGTIDHGLLFTKGHLH---RINTFADADWGSDLDDRRSTSGYCVYFGSNLVSW 457
            KRIL+YL GT+ +GL      ++    +  F DADW SD+DDRRSTSG  ++FG NL+SW
Sbjct: 1093 KRILKYLKGTLSYGLHMQPAAVNGPISLTAFCDADWASDIDDRRSTSGSAIFFGPNLISW 1152

Query: 456  SAKKQAVVSRSSTEAEYRSIASATCDVFWIHSLLQEIGFQIHKPTTVWTDNLGAVSLSVN 277
             ++KQ V++RSSTEAEYRSIA A+ ++ WI +LLQE+      PT +  DN  AV+++ N
Sbjct: 1153 WSRKQRVIARSSTEAEYRSIAQASAELTWIQALLQELKVPFSTPTLL-CDNQSAVAIAHN 1211

Query: 276  PVFHSRTKHFELDLHFIREKVAKQQISVQHIPGSEQVADILTKPLTGQFFVRLRNKLNVV 97
            PVFHS+TKH E+D+ F+R+KV  +Q+ V HIP  +Q AD+LTKPL+   F  LRNKL V 
Sbjct: 1212 PVFHSKTKHMEIDVFFVRDKVLSKQLLVYHIPALDQWADLLTKPLSAARFEVLRNKLKVQ 1271

Query: 96   S 94
            S
Sbjct: 1272 S 1272



 Score =  302 bits (773), Expect = 2e-80
 Identities = 154/348 (44%), Positives = 216/348 (62%), Gaps = 2/348 (0%)
 Frame = -2

Query: 3096 MVQDQKSGVILLKGNV-ENGLYKFHFSNSQSPLSRISPSCSAN-SKNLSVNHLQLQKSAI 2923
            +V+ Q +  +LL+G V  +GLY F       P  ++    S N +KN  V+         
Sbjct: 315  LVKSQDTNEVLLQGVVGADGLYSF-------PHLKLQVLDSFNFNKNSDVSSSS------ 361

Query: 2922 DVAIWHSRLGHVPLDIIKKVFQGCNFPFNDNNSQFICPSCCKAKSHIQPFPTSTTEHNKL 2743
               +WH+RLGH    ++K V   CN   ++ +    C SCC  KS   P   S T ++  
Sbjct: 362  --TMWHTRLGHPNSHVLKLVLTQCNLLSSNTHVTEFCSSCCVGKSRRLPSSASQTIYSAP 419

Query: 2742 LELIHTDLWGPAPLKSNNGYAYYISFIDHASRYTWIYLLKNKSDTSKAFLHFKNLAENQC 2563
            L++I TDLWGP+ + S +GY YY++FID  S+YTWIY LK+K++T   F  FK +AE Q 
Sbjct: 420  LDVIFTDLWGPSHITSFSGYLYYVAFIDAFSKYTWIYPLKSKAETLSVFQQFKAMAELQF 479

Query: 2562 NTRIKAIQSDGGTEYKPLHDILAQNGIIHRISCPYTPQQNGLAERKHRHIIETALSLLAH 2383
            NT+IK++QSD G EY+     LA NGI HR+ CP+T  QNG+ ERKHRHI+E  L+LL H
Sbjct: 480  NTKIKSVQSDWGGEYRAFTSFLATNGIQHRVICPHTHHQNGVVERKHRHIVEIGLTLLHH 539

Query: 2382 SSVPQSYWDDAVTSAVFLINRMPSKVLKYKSPYEVFTGHKPNYSFLKVFGCLCYPHLRPY 2203
            +S+P  +WD A T+AV+LINR+PS  L +  P+       P+Y FL+ FGC C+P LRPY
Sbjct: 540  ASLPLKFWDFAFTTAVYLINRLPSAALNFNVPFTTLFNKSPDYKFLRTFGCACFPFLRPY 599

Query: 2202 NKHKLEFRSTPGVFIGYSLQYKGYKVLLPNKKIVITRNVVFDEDKFPF 2059
              HKL FRS   VF+GYS  +KGYK L  + +I I+++V+F+E +FP+
Sbjct: 600  ASHKLNFRSQECVFLGYSNSHKGYKCLSSSGRIYISKDVIFNEHRFPY 647



 Score = 97.8 bits (242), Expect = 9e-17
 Identities = 79/306 (25%), Positives = 122/306 (39%)
 Frame = -1

Query: 4003 VIASWXXXXXXXXXXITTVGFTTSKQIWDALTEGFASQSRAKIMQYKLQLQNLRKGTNSM 3824
            ++ +W             +G   S Q+WD + E F +Q++A+  Q +  L++      SM
Sbjct: 1    MLLTWLQSTLSKSILSRVIGSVHSYQVWDKVHEYFHTQTKARARQLRTDLRSTTLDGQSM 60

Query: 3823 REYLNRAKVCCDMLATIGYKLSEEEQIMYILTGLNAEYNAVVVSINSRVEPYTLMEVHAX 3644
            R++L + K   D LA +G  +S EE +  +L GL  EY  VV  I S+     + EV A 
Sbjct: 61   RDFLTQIKTIADELAGVGSPVSLEEYVDAVLEGLPQEYAPVVSVIESKFVTPPIAEVEA- 119

Query: 3643 XXXXXXXXXXXENTVSQINSEGSLPSANVATNESNSKXXXXXXXXXXXXXXXXXXXXXXX 3464
                       E+  ++   +   PS N     S                          
Sbjct: 120  ------LLLAHESRANRFRKQSFSPSINYTQGYSRGS-----------------VSGGHS 156

Query: 3463 XXXXXXXXXXXXXXGWRQPRCQICFIPGHSAAKCFHRANLNFVPTSNNNSFYTQNQSTNH 3284
                           +   +CQICF  GH+A  CF+RA++N+ P  +             
Sbjct: 157  GRRGGRGSGRGRGGRFANFQCQICFKYGHTANVCFYRADVNYQPAES------------- 203

Query: 3283 NSNDPHANRYGSFSANVASTSQDHAQETCWFPDSGATNHLTYDLGNLNLAHDYQGTDRIQ 3104
                          A VA+TSQ  A  + W PDSGA+ H+T +  N++    + G D+I 
Sbjct: 204  -----------LVLAMVANTSQPGANSS-WIPDSGASFHVTGEPQNIHQLEHFDGPDQIF 251

Query: 3103 IGNGSG 3086
            IGNG G
Sbjct: 252  IGNGQG 257