BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia27_contig00014220
         (2731 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP34298.1| Retrovirus-related Pol polyprotein from transposo...   788   0.0  
gb|KYP61022.1| Retrovirus-related Pol polyprotein from transposo...   791   0.0  
gb|KYP42564.1| Retrovirus-related Pol polyprotein from transposo...   792   0.0  
gb|KYP37906.1| Retrovirus-related Pol polyprotein from transposo...   779   0.0  
gb|KHN01991.1| Retrovirus-related Pol polyprotein from transposo...   780   0.0  
emb|CAN71595.1| hypothetical protein VITISV_010143 [Vitis vinifera]   785   0.0  
gb|KYP36109.1| Retrovirus-related Pol polyprotein from transposo...   765   0.0  
emb|CAN82526.1| hypothetical protein VITISV_028058 [Vitis vinifera]   764   0.0  
gb|KYP64985.1| Retrovirus-related Pol polyprotein from transposo...   770   0.0  
gb|KYP39497.1| Retrovirus-related Pol polyprotein from transposo...   764   0.0  
gb|KYP55668.1| Retrovirus-related Pol polyprotein from transposo...   747   0.0  
gb|KYP70921.1| Retrovirus-related Pol polyprotein from transposo...   748   0.0  
dbj|BAB10503.1| retroelement pol polyprotein-like [Arabidopsis t...   748   0.0  
gb|KYP67096.1| Retrovirus-related Pol polyprotein from transposo...   720   0.0  
emb|CAN76546.1| hypothetical protein VITISV_010420 [Vitis vinifera]   732   0.0  
gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hop...   728   0.0  
gb|KYP34729.1| Retrovirus-related Pol polyprotein from transposo...   717   0.0  
emb|CAN62535.1| hypothetical protein VITISV_041880 [Vitis vinifera]   721   0.0  
gb|AAG10817.1|AC011808_5 Putative retroelement polyprotein [Arab...   720   0.0  
gb|KYP58728.1| Retrovirus-related Pol polyprotein from transposo...   713   0.0  

>gb|KYP34298.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1002

 Score =  788 bits (2034), Expect = 0.0
 Identities = 406/877 (46%), Positives = 553/877 (63%), Gaps = 15/877 (1%)
 Frame = -2

Query: 2586 WHTRLGHASYGILE----HLPFLKPHCNKGVEQSVKQCDICHISKQHRVPFSSSESHATA 2419
            WH RLGH ++  L+    + PF+    NK        C++C+++KQ ++PFS S + A  
Sbjct: 92   WHIRLGHLAHEKLQAMKSNFPFIDCKKNKD------PCNVCYLAKQRQLPFSHSVTKADE 145

Query: 2418 LFDLIHVDVWGPFHSGTLFYHTPYFLTIVDDYSRTTWTYLMTHKSQVYSLLHKYIQMVQT 2239
            +FDL+HVD+WGP    ++F H  +FLTIVDD SR TW Y M HKS+V   L  +I +++ 
Sbjct: 146  IFDLLHVDIWGPTTPASIFGHK-FFLTIVDDKSRHTWVYFMKHKSEVADHLSSFITLIEN 204

Query: 2238 QFHKVIKIIRTDNGTEFLNQNCKNLFEQHGILHHKSCTYTPQQNGVVERKHRHLLDTARA 2059
            QF K +K +R+DNG EFL    KN + + GILH  SC  TPQQNG+VERKH+H++  ARA
Sbjct: 205  QFGKKVKCVRSDNGPEFL---LKNFYHEKGILHQTSCVETPQQNGIVERKHQHIMTVARA 261

Query: 2058 LLFQSKLPIDFWPFSLLTATYIINRIPLSTLHWKSPYEVLFNKLPNYNLLKPFGCAAYAT 1879
            L+ QS LP  FW +++  A ++INR P S L  K PYE+++N LP+   +K FGC AYAT
Sbjct: 262  LVMQSNLPKSFWFYAVSHAVFLINRQPSSFLENKIPYEIIYNALPDLAGIKVFGCLAYAT 321

Query: 1878 NLLPHKHKFDARAHKCIFVGYELGKKGYKLFDPATNKFLVTREAFFIETEFPSLPQR--- 1708
             L  ++ KFD R  +C+F+G++   KG  L+D  + +  ++R   + E  FP LP     
Sbjct: 322  TLHHNRKKFDPRGRRCVFLGFKPQVKGSILYDLNSRETFLSRHVEYFEHIFPFLPTSPLD 381

Query: 1707 -NDSTHLPHVSEPEHTXXXXXXXXXXXXXSHTDLHIA-----LRKGPRRIHPPAKFADYV 1546
               +  LP    P                + + + +      +RK  R    P+   DY 
Sbjct: 382  LTQTISLPRHQPPLPIDTDPTPLSTNTTPTSSPVSVVPPPPFVRKSTRPRKLPSYLHDYH 441

Query: 1545 VYNAAAHLSPTPTEVITSGSFTSQYSVPTFPFFVSPHFSQPYVSFLANVSSIREPTTYAQ 1366
                  H SPT ++ + S      YS          + S    +F  ++SSI+EP +Y +
Sbjct: 442  HTLLTTHNSPTISQPLYSIHNHISYS----------NLSPSQKAFSLSISSIKEPNSYVE 491

Query: 1365 ASDDPHWVEAMNKELDALESNHTWELTPLPQGKKAIGCKWVYKVKLNPDGTVDRYKARLV 1186
            A  D  W  A+  EL ALE N+TW LTPLP  K+ +GCKWV+K+K N DGT++R+KARLV
Sbjct: 492  AIQDESWKTAIQTELTALEKNNTWILTPLPPNKQVVGCKWVFKLKFNSDGTIERHKARLV 551

Query: 1185 AKGYHQVHGVDYLDSFSPVAKMVTVRMLIAIAATRGWELHQLDINNAFLHGYLDETIYML 1006
            AKGY Q   +DYLD+FSPV KM TVR L+A+A  + W +HQLD+N  FLHG L E +YM 
Sbjct: 552  AKGYTQTETLDYLDTFSPVVKMTTVRTLLAVATAKNWHIHQLDVNTTFLHGDLHEEVYMT 611

Query: 1005 PPAGYKKA--KLGEVCLLKRSLYGLKQASRQWNTEFCTKLLAFGFIQSVHDHCLFTKHSA 832
            PP G   +  +   VC L +SLYGLKQASRQWN +  + L+  GF QS+ D+ LFTK   
Sbjct: 612  PPPGLTVSPHQSNCVCKLVKSLYGLKQASRQWNAKLTSVLIDSGFKQSMADYSLFTKQFG 671

Query: 831  SSSMCLLVYVDDVLVTGSNPDDIRDLKQYLDRLFTIKDLGAAKYFLGLELARSDAGIYLN 652
            +    +LVYVDD+++ G++P +I  +K  LD+ FTIKDLG  KYFLG+E+ARS  GI L 
Sbjct: 672  AKFTAILVYVDDLVLAGNDPTEINYIKSLLDQKFTIKDLGQLKYFLGMEVARSSTGIALY 731

Query: 651  QRKYILDILDDVGLMGCKPASTPFPQGLKLVHGTDPPLSNPDQYRRLVGRLLYLNLTRPD 472
            QRKY LD+++D GL+  KP  +P    +KL      PL++P QYRRL+GRL+YL  TR D
Sbjct: 732  QRKYALDLIEDTGLLASKPCKSPMDHSVKLHKTVGTPLTDPTQYRRLLGRLIYLTNTRAD 791

Query: 471  ITFCVQQLSQFINSHCVAHWNVATHLLRYLKGCPSKGLFYAADSPSSLTAYSDADWAACH 292
            I+F V  LSQF++     H+  A  +L+Y+K  P KGLF+ + S  +L  YSD+DWA+C 
Sbjct: 792  ISFSVNHLSQFMDQPTDVHYQAALRILKYVKNAPGKGLFFPSSSDLTLKGYSDSDWASCS 851

Query: 291  DTRRSITGFCIFLGTSLISWKAKKQTTVSKSSAEAEYRALSSTVCELQWVTYVAQDFHLR 112
            DTRRS+TGF  FLG +LISWK+KKQ TVSKSSAEAEYRAL+ + CE QW++Y+  DF L 
Sbjct: 852  DTRRSVTGFSFFLGPALISWKSKKQATVSKSSAEAEYRALAQSTCEAQWLSYLLHDFGLH 911

Query: 111  FPTLIPLLCDNQAALHIVANPVFHERTKHLDIDCHIV 1
                I L CDNQ+ALHI +NPVFHERTK++++DCHIV
Sbjct: 912  SFHPIVLFCDNQSALHIASNPVFHERTKNIELDCHIV 948


>gb|KYP61022.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1316

 Score =  791 bits (2042), Expect = 0.0
 Identities = 410/869 (47%), Positives = 561/869 (64%), Gaps = 7/869 (0%)
 Frame = -2

Query: 2586 WHTRLGHASYGILEHLPFLKPHCNKGVEQSVKQCDICHISKQHRVPFSSSESHATALFDL 2407
            WH R+GH S+  L+  PFL       V+ S   C+ CH +KQ ++PF  S S+A+  FDL
Sbjct: 416  WHFRMGHLSHERLQSFPFLS------VDTSFS-CNTCHHAKQKKLPFPLSHSYASQPFDL 468

Query: 2406 IHVDVWGPFHSGTLFYHTPYFLTIVDDYSRTTWTYLMTHKSQVYSLLHKYIQMVQTQFHK 2227
            +H+D+WGP    ++  H  YFLTIVDD++R TW +LM +KS+    +  +I  V+TQF K
Sbjct: 469  LHMDIWGPCSVTSMHGHK-YFLTIVDDHTRFTWLFLMQNKSETRQHIINFINQVETQFDK 527

Query: 2226 VIKIIRTDNGTEFLNQNCKNLFEQHGILHHKSCTYTPQQNGVVERKHRHLLDTARALLFQ 2047
             +K+IRTDNG EF   +    F   GI+H  +C  TPQQNG+VERKH+HLL+  R+LLFQ
Sbjct: 528  HVKVIRTDNGLEF---SMTQYFSSKGIIHQTTCVETPQQNGIVERKHQHLLNVTRSLLFQ 584

Query: 2046 SKLPIDFWPFSLLTATYIINRIPLSTLHWKSPYEVLFNKLPNYNLLKPFGCAAYATNLLP 1867
            + LP  FW F+L+ AT++IN IP   LH  SP+E L+    + ++L  FGC  Y++ +  
Sbjct: 585  ANLPSIFWCFALMHATFLINCIPTPFLHNISPFEKLYGHPCDISILCVFGCLCYSSTITS 644

Query: 1866 HKHKFDARAHKCIFVGYELGKKGYKLFDPATNKFLVTREAFFIETEFPSLPQRND---ST 1696
            H+ K D RAH CIF+G++   KGY LF+  T+  LV+R   F E  FPS  + +    S+
Sbjct: 645  HRTKLDPRAHPCIFLGFKPHTKGYLLFNLHTHGLLVSRNVLFHEDHFPSFTKPHSPSFSS 704

Query: 1695 HLP-HVSEPEHTXXXXXXXXXXXXXSHTDLHIA---LRKGPRRIHPPAKFADYVVYNAAA 1528
             +P H +  ++                +D H +   LR+  R   PP    D+       
Sbjct: 705  PVPIHYNYVDYPTFPSSSIVESSDPPTSDQHSSPPPLRRSTRPRRPPTYLQDF------- 757

Query: 1527 HLSPTPTEVITSGSFTSQYSVPTFPFFVSPHFSQPYVSFLANVSSIREPTTYAQASDDPH 1348
            H + T T    S +       P   F      S  +  ++ ++SS+ EP  +A+AS    
Sbjct: 758  HGAFTSTSTAHSSTGIRH---PLHSFLSYDLLSPSFHHYVFSISSVTEPKNFAEASKSDS 814

Query: 1347 WVEAMNKELDALESNHTWELTPLPQGKKAIGCKWVYKVKLNPDGTVDRYKARLVAKGYHQ 1168
            W++AM++E+ ALE+N+TW LT LP  K AIGC+WVYKVK   DG++DRYKARLVAKGY Q
Sbjct: 815  WLKAMHEEIFALEANNTWVLTTLPPHKTAIGCRWVYKVKHKADGSIDRYKARLVAKGYTQ 874

Query: 1167 VHGVDYLDSFSPVAKMVTVRMLIAIAATRGWELHQLDINNAFLHGYLDETIYMLPPAGYK 988
            + G+D+ D+FSPVAK+ TVR+L+++AA   W L QLD+NNAFLHG L+E +YM  P G  
Sbjct: 875  MEGLDFFDTFSPVAKLTTVRLLLSLAAINNWHLKQLDVNNAFLHGDLNEEVYMQLPPGLT 934

Query: 987  KAKLGEVCLLKRSLYGLKQASRQWNTEFCTKLLAFGFIQSVHDHCLFTKHSASSSMCLLV 808
             +  G+VC L+RSLYGLKQASRQW     + L+  G++ S  DH LF K S +++  +L+
Sbjct: 935  PSFPGQVCRLQRSLYGLKQASRQWYARLSSFLIQHGYVPSPSDHSLFLKCSPATTTAILI 994

Query: 807  YVDDVLVTGSNPDDIRDLKQYLDRLFTIKDLGAAKYFLGLELARSDAGIYLNQRKYILDI 628
            YVDD+++ G++  +I  L   L   F IKDLG  KYFLGLE+AR+  GI+L QRKYILD+
Sbjct: 995  YVDDIVLAGNDLTEIHHLTSLLHTTFQIKDLGNLKYFLGLEVARNHTGIHLCQRKYILDL 1054

Query: 627  LDDVGLMGCKPASTPFPQGLKLVHGTDPPLSNPDQYRRLVGRLLYLNLTRPDITFCVQQL 448
            L D G++  KP STP    + L   +  PL++   YRRLVGRL+YL  TRPDIT+ VQQL
Sbjct: 1055 LSDTGMLASKPVSTPMDYSMHLSASSGTPLTDTAAYRRLVGRLIYLTNTRPDITYAVQQL 1114

Query: 447  SQFINSHCVAHWNVATHLLRYLKGCPSKGLFYAADSPSSLTAYSDADWAACHDTRRSITG 268
            SQF+++   AH      +LRYLKG P  G+F + +S   L A+SD+DWA C DTRRSITG
Sbjct: 1115 SQFVSNPTTAHRQALFRILRYLKGTPGSGIFLSVNSSVQLRAFSDSDWAGCPDTRRSITG 1174

Query: 267  FCIFLGTSLISWKAKKQTTVSKSSAEAEYRALSSTVCELQWVTYVAQDFHLRFPTLIPLL 88
            F ++LG SLISWK+KKQ TVS+SS+EAEYRAL++T CELQW++Y+ +DFH+   +   L 
Sbjct: 1175 FAVYLGDSLISWKSKKQITVSRSSSEAEYRALATTTCELQWLSYLLKDFHIDPISPSILY 1234

Query: 87   CDNQAALHIVANPVFHERTKHLDIDCHIV 1
            CDNQ+AL I +NPVFHERTKH++IDCHIV
Sbjct: 1235 CDNQSALQIASNPVFHERTKHIEIDCHIV 1263


>gb|KYP42564.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1427

 Score =  792 bits (2046), Expect = 0.0
 Identities = 429/944 (45%), Positives = 573/944 (60%), Gaps = 34/944 (3%)
 Frame = -2

Query: 2730 QDLKTDHVLGIGKVVGSLYILDTQQTGGXXXXXXXXXXXXXXXXXVTT----WHTRLGHA 2563
            QDL +   +G+ +V   LYIL                         T+    WH RLGH 
Sbjct: 439  QDLTSKKTIGLAEVKNHLYILQRPSKDNSISACKSNSVLNAQPKGTTSSFDLWHYRLGHP 498

Query: 2562 SYGILEHLPFLKPHC--NKGVEQSVKQCDICHISKQHRVPFSSSESHATALFDLIHVDVW 2389
            S+ +L+ +  L P+   NK +      CD CH  KQ R+PF +S + + + FDL+H+D+W
Sbjct: 499  SHVVLQTVKRLFPYVTYNKNIT-----CDYCHFGKQARLPFPTSTTKSLSCFDLVHMDIW 553

Query: 2388 GPFHSGTLFYHTPYFLTIVDDYSRTTWTYLMTHKSQVYSLLHKYIQMVQTQFHKVIKIIR 2209
            GP    ++  H  YFLTIVDDYSR TW Y M  K +  +L+  +I  VQTQF K IK++R
Sbjct: 554  GPLAIPSIHGHK-YFLTIVDDYSRHTWIYFMKSKGETRNLIQNFISYVQTQFTKHIKVLR 612

Query: 2208 TDNGTEFLNQNCKNLFEQHGILHHKSCTYTPQQNGVVERKHRHLLDTARALLFQSKLPID 2029
            +DNG EF       L+  +GI+H  SC  TPQQN VVERKHRH+L+  R LLF S +P  
Sbjct: 613  SDNGVEFAMDQ---LYATYGIVHQTSCVETPQQNSVVERKHRHILNITRTLLFHSNVPKS 669

Query: 2028 FWPFSLLTATYIINRIPLSTLHWKSPYEVLFNKLPNYNLLKPFGCAAYATNLLPHKHKFD 1849
            FW +++  A ++INR+P   L+  SPY++L++K P    LK FG   YA+ L+  + K  
Sbjct: 670  FWCYAVGHAIHLINRLPSPVLNNSSPYQMLYDKPPTLLDLKVFGSLCYASTLVQGRSKLA 729

Query: 1848 ARAHKCIFVGYELGKKGYKLFDPATNKFLVTREAFFIETEFP----------SLPQRNDS 1699
             +A K +++G + G KG+ + D  T    V+R   F E  FP          +  Q+ND+
Sbjct: 730  PKATKGVYLGVKQGTKGFLVLDLLTRSIFVSRNVVFYEHIFPFFEKGSTVITNSQQQNDA 789

Query: 1698 T----HLPHVSEPEHTXXXXXXXXXXXXXSHTDLH--------------IALRKGPRRIH 1573
                 +L   S P  T                DL+                LRK  R   
Sbjct: 790  CFDFLYLDSSSHPVTTIDNSSLLDIDSAHYENDLNDIDESAHPSETSSPSQLRKSTRHKC 849

Query: 1572 PPAKFADYVVYNAAAHLSPTPTEVITSGSFTSQYSVPTFPFFVSPHFSQPYVSFLANVSS 1393
             PA   DY   N    + P   + I       +Y + T   + S   S  Y  ++ ++++
Sbjct: 850  SPAYLKDYHC-NLLIGVPPPEDKHI-------RYPLNTVLSYDS--LSASYSRYVLSITT 899

Query: 1392 IREPTTYAQASDDPHWVEAMNKELDALESNHTWELTPLPQGKKAIGCKWVYKVKLNPDGT 1213
              EP T+ QA  +  WVEAM  ELDALE N TW + PLP GK  IG KWVYK+K   DG+
Sbjct: 900  HVEPHTFNQAVKNKVWVEAMQAELDALEHNKTWTIMPLPPGKTPIGSKWVYKIKYKSDGS 959

Query: 1212 VDRYKARLVAKGYHQVHGVDYLDSFSPVAKMVTVRMLIAIAATRGWELHQLDINNAFLHG 1033
            ++RYKARLV KGY Q+ G+DY D+F+PVAK+ TVRML+AIA+ + WELHQLDINNAFLHG
Sbjct: 960  IERYKARLVVKGYTQIQGLDYFDTFAPVAKLSTVRMLLAIASCQHWELHQLDINNAFLHG 1019

Query: 1032 YLDETIYMLPPAGYKKAKLGEVCLLKRSLYGLKQASRQWNTEFCTKLLAFGFIQSVHDHC 853
             L E +YM  P G    K   VC L +SLYGLKQASRQW  +  + LL+  + QS HDH 
Sbjct: 1020 DLLEDVYMEIPQGLNIDKPNHVCKLNKSLYGLKQASRQWFAKLSSFLLSLHYKQSQHDHS 1079

Query: 852  LFTKHSASSSMCLLVYVDDVLVTGSNPDDIRDLKQYLDRLFTIKDLGAAKYFLGLELARS 673
            LFTKH  +    +L+YVDD+++ G++ ++I  +KQ LD  F IKDLG  +YFLGLE+ARS
Sbjct: 1080 LFTKHHGTHFTVILIYVDDLIIAGTDSEEINHIKQSLDVKFKIKDLGPLRYFLGLEIARS 1139

Query: 672  DAGIYLNQRKYILDILDDVGLMGCKPASTPFPQGLKLVHGTDPPLSNPDQYRRLVGRLLY 493
              GI L+QRKY LD+LD+   +  KP  TP  +G +L H TD P  +P  YRRL+G+LLY
Sbjct: 1140 HLGISLSQRKYTLDLLDETSFLAGKPVLTPIIKGTRLSHTTDSPYEDPAGYRRLIGKLLY 1199

Query: 492  LNLTRPDITFCVQQLSQFINSHCVAHWNVATHLLRYLKGCPSKGLFYAADSPSSLTAYSD 313
            L  TRPDI++ VQQLSQF++    +H+  A  +LRYLKG P +GLFY ADSP  L A+SD
Sbjct: 1200 LITTRPDISYSVQQLSQFLSCPQQSHYQAAIRVLRYLKGNPGQGLFYPADSPLQLKAFSD 1259

Query: 312  ADWAACHDTRRSITGFCIFLGTSLISWKAKKQTTVSKSSAEAEYRALSSTVCELQWVTYV 133
            +DWA+C DTRRS++G+ IFLG SLISWK KKQ+T+S+SS+EAEYRAL++T CE+QW+TY+
Sbjct: 1260 SDWASCPDTRRSLSGYSIFLGNSLISWKCKKQSTISRSSSEAEYRALAATACEIQWLTYL 1319

Query: 132  AQDFHLRFPTLIPLLCDNQAALHIVANPVFHERTKHLDIDCHIV 1
             QDF + F T   L CDNQ+A HI +N VFHERTKH++IDCH+V
Sbjct: 1320 LQDFSVPFTTPALLYCDNQSARHIASNAVFHERTKHIEIDCHLV 1363


>gb|KYP37906.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1097

 Score =  779 bits (2011), Expect = 0.0
 Identities = 402/870 (46%), Positives = 547/870 (62%), Gaps = 15/870 (1%)
 Frame = -2

Query: 2586 WHTRLGHASYGILE----HLPFLKPHCNKGVEQSVKQCDICHISKQHRVPFSSSESHATA 2419
            WH RLGH ++  L+    + PF+    NK        C++C+++KQ ++PFS S + A  
Sbjct: 248  WHIRLGHLAHEKLQAMKSNFPFIDCKKNKD------PCNVCYLAKQRQLPFSHSVTKADE 301

Query: 2418 LFDLIHVDVWGPFHSGTLFYHTPYFLTIVDDYSRTTWTYLMTHKSQVYSLLHKYIQMVQT 2239
            +FDL+HVD+WGP    ++F H  +FLTIVDD SR TW Y M HKS+V   L  +I +++ 
Sbjct: 302  IFDLLHVDIWGPTTPASIFGHR-FFLTIVDDKSRHTWVYFMKHKSEVADHLSSFITLIEN 360

Query: 2238 QFHKVIKIIRTDNGTEFLNQNCKNLFEQHGILHHKSCTYTPQQNGVVERKHRHLLDTARA 2059
            QF K +K +R+DNG EFL    KN + + GILH  SC  TPQQNG+VERKH+H++  ARA
Sbjct: 361  QFGKKVKCVRSDNGPEFL---LKNFYHEKGILHQTSCVETPQQNGIVERKHQHIMTVARA 417

Query: 2058 LLFQSKLPIDFWPFSLLTATYIINRIPLSTLHWKSPYEVLFNKLPNYNLLKPFGCAAYAT 1879
            L+ QS LP  FW +++  A ++INR P S L  K PYE+++N LP+   +K FGC AYAT
Sbjct: 418  LVMQSNLPKSFWFYAVSHAVFLINRQPSSFLENKIPYEIIYNALPDLAGIKVFGCLAYAT 477

Query: 1878 NLLPHKHKFDARAHKCIFVGYELGKKGYKLFDPATNKFLVTREAFFIETEFPSLPQR--- 1708
             L  ++ KFD R  +C+F+G++   KG  L+D  + +  ++R   + E  FP LP     
Sbjct: 478  TLHHNRKKFDPRGRRCVFLGFKPQVKGSILYDLNSRETFLSRHVEYFEHIFPFLPTSPLD 537

Query: 1707 -NDSTHLPHVSEPEHTXXXXXXXXXXXXXSHTDLHIA-----LRKGPRRIHPPAKFADYV 1546
               +  LP    P                + + + +      ++K  R    P+   DY 
Sbjct: 538  LTQTISLPRHQPPLPIDTDPTPLSTNTTPTSSPVSVVPPPPFVQKSTRPRKLPSYLHDYH 597

Query: 1545 VYNAAAHLSPTPTEVITSGSFTSQYSVPTFPFFVSPHFSQPYVSFLANVSSIREPTTYAQ 1366
                  H SPT ++ + S      YS          + S    +F  ++SSI+EP +Y +
Sbjct: 598  HTLLTTHNSPTISQPLYSIHNHISYS----------NLSPSQKAFSLSISSIKEPNSYVE 647

Query: 1365 ASDDPHWVEAMNKELDALESNHTWELTPLPQGKKAIGCKWVYKVKLNPDGTVDRYKARLV 1186
            A  D  W  A+  EL ALE N+TW LTPLP  K+ +GCKWV+K+K N DGT++R+KARLV
Sbjct: 648  AIQDESWKTAIQTELTALEKNNTWILTPLPPNKQVVGCKWVFKLKFNSDGTIERHKARLV 707

Query: 1185 AKGYHQVHGVDYLDSFSPVAKMVTVRMLIAIAATRGWELHQLDINNAFLHGYLDETIYML 1006
            AKGY Q  G+DYLD+FSPV KM TVR L+A+A  + W +HQLD+N  FLHG L E +YM 
Sbjct: 708  AKGYTQTEGLDYLDTFSPVVKMTTVRTLLAVATAKNWHIHQLDVNTTFLHGDLHEEVYMT 767

Query: 1005 PPAGYKKA--KLGEVCLLKRSLYGLKQASRQWNTEFCTKLLAFGFIQSVHDHCLFTKHSA 832
            PP G   +  +   VC L +SLYGLKQASRQWN +  + L+  GF QS+ D+ LFTK   
Sbjct: 768  PPPGLTVSPHQSNCVCKLVKSLYGLKQASRQWNAKLTSVLIDSGFKQSMADYSLFTKQFG 827

Query: 831  SSSMCLLVYVDDVLVTGSNPDDIRDLKQYLDRLFTIKDLGAAKYFLGLELARSDAGIYLN 652
            +    +LVYVDD+++ G++P +I  +K  LD+ FTIKDLG  KYFLG+E+ARS  GI L 
Sbjct: 828  AKFTAILVYVDDLVLAGNDPTEINYIKSLLDQKFTIKDLGQLKYFLGMEVARSSTGIALY 887

Query: 651  QRKYILDILDDVGLMGCKPASTPFPQGLKLVHGTDPPLSNPDQYRRLVGRLLYLNLTRPD 472
            QRKY LD+++D GL+  KP  +P    +KL      PL++P QYRRL+GRL+YL  TR D
Sbjct: 888  QRKYALDLIEDTGLLASKPCKSPMDHSVKLHKTVGTPLTDPTQYRRLLGRLIYLTNTRAD 947

Query: 471  ITFCVQQLSQFINSHCVAHWNVATHLLRYLKGCPSKGLFYAADSPSSLTAYSDADWAACH 292
            I+F V  LSQF++     H+  A  +L+Y+K  P KGLF+ + S  +L  YSD+DWA+C 
Sbjct: 948  ISFSVNHLSQFMDQPTDVHYQAALRILKYVKNAPGKGLFFPSSSDLTLKGYSDSDWASCS 1007

Query: 291  DTRRSITGFCIFLGTSLISWKAKKQTTVSKSSAEAEYRALSSTVCELQWVTYVAQDFHLR 112
            DTRRS+TGF  FLG +LISWK+KKQ TVSKSSAEAEYRAL+ + CE QW++Y+  DF L 
Sbjct: 1008 DTRRSVTGFSFFLGPALISWKSKKQATVSKSSAEAEYRALAQSTCEAQWISYLLHDFGLH 1067

Query: 111  FPTLIPLLCDNQAALHIVANPVFHERTKHL 22
                I L CDNQ+ALHI +NPVFHERTKH+
Sbjct: 1068 NFHPIVLFCDNQSALHIASNPVFHERTKHI 1097


>gb|KHN01991.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Glycine soja]
          Length = 1311

 Score =  780 bits (2015), Expect = 0.0
 Identities = 409/886 (46%), Positives = 551/886 (62%), Gaps = 24/886 (2%)
 Frame = -2

Query: 2586 WHTRLGHASYGILEHLPFLKPHCNKGVEQSVKQCDICHISKQHRVPFSSSESHATALFDL 2407
            WH R+GH S    E L  +KPH           C+ CH +K  ++PFSSS SHA+ +F L
Sbjct: 403  WHFRMGHLS---TERLQCMKPHYPILRNDKTFVCNTCHYAKHKKLPFSSSTSHASHIFYL 459

Query: 2406 IHVDVWGPFHSGTLFYHTPYFLTIVDDYSRTTWTYLMTHKSQVYSLLHKYIQMVQTQFHK 2227
            +HVD+WGP    ++  H  YFLTIVDD+SR TW +LM  K++   ++  +I  V+TQ++K
Sbjct: 460  LHVDIWGPCSKPSMHGHK-YFLTIVDDHSRFTWVHLMHTKAETRDIIVNFIASVETQYNK 518

Query: 2226 VIKIIRTDNGTEFLNQNCKNLFEQHGILHHKSCTYTPQQNGVVERKHRHLLDTARALLFQ 2047
             IK IR+DNG EFL     + +   GI+H  +C  TP+QNG+ ERKH+HLL+  RALLFQ
Sbjct: 519  KIKKIRSDNGYEFL---MPSFYASKGIMHQTTCVETPEQNGIAERKHQHLLNVTRALLFQ 575

Query: 2046 SKLPIDFWPFSLLTATYIINRIPLSTLHWKSPYEVLFNKLPNYNLLKPFGCAAYATNLLP 1867
            + LP +FW ++LL ATY++N IP   LH  SPYE L   LP  + L+ FGC  YA+ L  
Sbjct: 576  ANLPSNFWCYALLHATYLVNCIPTPFLHNVSPYEKLHGHLPEISHLRVFGCLCYASTLKA 635

Query: 1866 HKHKFDARAHKCIFVGYELGKKGYKLFDPATNKFLVTREAFFIETEFPSLPQRNDS---- 1699
            ++ K D RAH CIF+G++   KGY +++   +  + +R   F E  F  +P+   S    
Sbjct: 636  NRKKLDPRAHPCIFIGFKASTKGYLVYNLHLHSIITSRNVVFYEDHFSQIPETQSSHPES 695

Query: 1698 -THLP---HVSEPEHTXXXXXXXXXXXXXSHTDLHIAL--------------RKGPRRIH 1573
             T LP   ++S  +                HT L +                R+  R  H
Sbjct: 696  STILPKSFNISPHDPIIEKPPQPVIQETTDHTPLQLTSTDESAFSQRTKHEPRRSTRPKH 755

Query: 1572 PPAKFADYVVYNAAAHLSPTPTEVITSGSFTSQYSVPTFPFFVSPHFSQPYVSFLANVSS 1393
             P    DY        LS   T+V TS  +      P          S  +  F+ ++SS
Sbjct: 756  APTYLQDY-----HHSLSSHDTKVSTSSRY------PLSSVLSYSRLSHTHKHFVMSISS 804

Query: 1392 IREPTTYAQASDDPHWVEAMNKELDALESNHTWELTPLPQGKKAIGCKWVYKVKLNPDGT 1213
              EP++YA+AS    W++AM  EL AL+SN+TW+LT LP  K AIGC+WVYK+K   DG+
Sbjct: 805  TVEPSSYAEASQYDCWIKAMEAELQALQSNNTWKLTLLPPHKTAIGCRWVYKIKHRADGS 864

Query: 1212 VDRYKARLVAKGYHQVHGVDYLDSFSPVAKMVTVRMLIAIAATRGWELHQLDINNAFLHG 1033
            ++RYKARLVAKGY Q+ G+DYL +FSPVAK+  VR+L+A+ A   W L QLD+NNAFLHG
Sbjct: 865  IERYKARLVAKGYTQMEGLDYLYAFSPVAKLTIVRLLLAMVAFNQWHLRQLDVNNAFLHG 924

Query: 1032 YLDETIYMLPPAGYKKAKLGEVCLLKRSLYGLKQASRQWNTEFCTKLLAFGFIQSVHDHC 853
             LDE +YM  P G        VC L+RSLY LKQASRQW T+    L++ GF +S  DH 
Sbjct: 925  ELDEEVYMQVPPGLSVPNSQMVCRLQRSLYELKQASRQWFTKLSGLLISLGFEKSHSDHS 984

Query: 852  LFTKHSASSSMCLLVYVDDVLVTGSNPDDIRDLKQYLDRLFTIKDLGAAKYFLGLELARS 673
            LF + + S    LLVYVDD+++TG++  +I+D+ + LD+ F IKDLG  KYFLG+E+ARS
Sbjct: 985  LFLRFTGSIITALLVYVDDIILTGNSESEIQDVIKLLDQAFKIKDLGNLKYFLGMEIARS 1044

Query: 672  DAGIYLNQRKYILDILDDVGLMGCKPASTPFPQGLKLVHGTDPPLSN--PDQYRRLVGRL 499
             +GI+L QRKY LDIL D G++GC+P  TP     KL      PLS      YRRL+GRL
Sbjct: 1045 SSGIHLCQRKYTLDILSDSGMLGCQPNVTPMDYSTKLQATAGTPLSTEASSSYRRLIGRL 1104

Query: 498  LYLNLTRPDITFCVQQLSQFINSHCVAHWNVATHLLRYLKGCPSKGLFYAADSPSSLTAY 319
            +YL  TRPDIT+ VQQLSQ++++    H   A  +LRYLKG    G+F +A     L A+
Sbjct: 1105 IYLTNTRPDITYAVQQLSQYMSNPTSVHQQAAYRILRYLKGTSGSGIFLSATGTPQLRAF 1164

Query: 318  SDADWAACHDTRRSITGFCIFLGTSLISWKAKKQTTVSKSSAEAEYRALSSTVCELQWVT 139
            SD+DWA C D+R+S TGF I+LG+S +SW++KKQ+TVS+SS+EAEYRA+++T CELQW+T
Sbjct: 1165 SDSDWAGCQDSRKSTTGFVIYLGSSPVSWQSKKQSTVSRSSSEAEYRAMATTTCELQWLT 1224

Query: 138  YVAQDFHLRFPTLIPLLCDNQAALHIVANPVFHERTKHLDIDCHIV 1
            Y+ QDF   F     + CDNQ+A+ I  NPVFHERTKH++IDCHIV
Sbjct: 1225 YLLQDFRHNFTKPATIYCDNQSAIQIATNPVFHERTKHIEIDCHIV 1270


>emb|CAN71595.1| hypothetical protein VITISV_010143 [Vitis vinifera]
          Length = 1523

 Score =  785 bits (2028), Expect = 0.0
 Identities = 426/961 (44%), Positives = 575/961 (59%), Gaps = 51/961 (5%)
 Frame = -2

Query: 2730 QDLKTDHVLGIGKVVGSLYILDTQQTGGXXXXXXXXXXXXXXXXXVTTWHTRLGHASYGI 2551
            QDL++  ++G+G     LY L+  + G                     WH RLGH S  +
Sbjct: 494  QDLQSGKMIGMGTESEGLYCLNLPRKG---------TCNVVNTKTQDLWHQRLGHPSSKV 544

Query: 2550 LEHLPFLKPHCNKGVEQSVKQCDICHISKQHRVPFSSSESHATALFDLIHVDVWGPFHSG 2371
                PFL+   NK ++  V  C IC ++K  R PF  S S + + FDLIHVD+WG +H  
Sbjct: 545  SVLFPFLQ---NKTLD--VSTCSICPLAKHTRTPFPLSVSSSDSCFDLIHVDIWGGYHVP 599

Query: 2370 TLFYHTPYFLTIVDDYSRTTWTYLMTHKSQVYSLLHKYIQMVQTQFHKVIKIIRTDNGTE 2191
            +L     YFLTIVDD+SR+TW YLM HKS+  SLL  ++ +V  QF   +KI+R+DNG E
Sbjct: 600  SLS-GAQYFLTIVDDHSRSTWVYLMHHKSEARSLLVHFVNLVANQFGSQVKIVRSDNGPE 658

Query: 2190 FLNQNCKNLFEQHGILHHKSCTYTPQQNGVVERKHRHLLDTARALLFQSKLPIDFWPFSL 2011
            F +      +   GILH  SC  TPQQNGVVERKHRHLL+ ARALLFQS LP  FW  ++
Sbjct: 659  FKHTQ---FYSSRGILHQTSCINTPQQNGVVERKHRHLLNVARALLFQSHLPKPFWGDAI 715

Query: 2010 LTATYIINRIPLSTLHWKSPYEVLFNKLPNYNLLKPFGCAAYATNLLPHKHKFDARAHKC 1831
            LTA Y+INR P   L  K+P+E LF+K PNY+ L+ FGC  + +       KFD R+ + 
Sbjct: 716  LTAAYLINRTPTPLLQGKTPFEKLFHKSPNYSHLRVFGCRCFVSTHPLRPSKFDPRSIES 775

Query: 1830 IFVGYELGKKGYKLFDPATNKFLVTREAFFIETEFP-----------------SLPQRND 1702
            +F+GY  G+KGYK++     K L++R+  F ETEFP                 SLPQ  D
Sbjct: 776  VFIGYPHGQKGYKVYSLKDKKXLISRDVTFFETEFPYQNXLSTTSPSLDTFFPSLPQTPD 835

Query: 1701 STHLPHVS--------EPEHTXXXXXXXXXXXXXSHTDLHI------------------- 1603
                 H+S        +P  T             SH+  H+                   
Sbjct: 836  IDD-DHISFNHSGSNLQPSATSSVDXHPQPTLDNSHSSSHVDPPSSPPSLNTSPPVISQP 894

Query: 1602 ---ALRKGPRRIHPPAKFADYVVYNAAAHLSPTP----TEVITSGSFTSQYSVPTFPFFV 1444
                 R+  R    P    D+ +  AA    P P    +EV  SG+  S   V ++    
Sbjct: 895  SPSQPRRSSRPTKTPTTLQDFHI-EAALPSRPVPPSSTSEVAHSGTIHSLSQVLSY---- 949

Query: 1443 SPHFSQPYVSFLANVSSIREPTTYAQASDDPHWVEAMNKELDALESNHTWELTPLPQGKK 1264
                S  + +F   ++  +EP +++QA  D  W EAMN E+ AL++N TW L PLP  KK
Sbjct: 950  -DRLSPMHKAFTVKITLAKEPRSFSQAVLDSRWREAMNTEIQALQANKTWSLVPLPSHKK 1008

Query: 1263 AIGCKWVYKVKLNPDGTVDRYKARLVAKGYHQVHGVDYLDSFSPVAKMVTVRMLIAIAAT 1084
             IGCKWVYK+K NPDGT++RYKARLVAKG+ QV G+DY ++F+PVAK+ TVR+L+++A+ 
Sbjct: 1009 PIGCKWVYKIKYNPDGTIERYKARLVAKGFSQVEGIDYRETFAPVAKLTTVRVLLSLASI 1068

Query: 1083 RGWELHQLDINNAFLHGYLDETIYMLPPAGYKKAKLGEVCLLKRSLYGLKQASRQWNTEF 904
            +GW LHQLD+NNAFL+G L E +YM  P G+ +     VC L +SLYGLKQASRQW  + 
Sbjct: 1069 QGWHLHQLDVNNAFLNGDLYEDVYMQLPPGFGRKGEHRVCKLHKSLYGLKQASRQWFLKL 1128

Query: 903  CTKLLAFGFIQSVHDHCLFTKHSASSSMCLLVYVDDVLVTGSNPDDIRDLKQYLDRLFTI 724
             + L A GF QS  D+ LF +++      LLVYVDDV++ G++ +DI + KQ+L   F +
Sbjct: 1129 SSALKAAGFKQSWSDYSLFXRNTQGRFTTLLVYVDDVILAGNSLEDIIETKQFLASHFKL 1188

Query: 723  KDLGAAKYFLGLELARSDAGIYLNQRKYILDILDDVGLMGCKPASTPFPQGLKLVHGTDP 544
            KD+G  +YFLG+E+ARS  GI L QRKY L++L+D G +G KP+  P  Q L L  G   
Sbjct: 1189 KDMGQLRYFLGIEVARSKQGIVLCQRKYALELLEDAGFLGAKPSRFPVEQSLTLTRGDGA 1248

Query: 543  PLSNPDQYRRLVGRLLYLNLTRPDITFCVQQLSQFINSHCVAHWNVATHLLRYLKGCPSK 364
             L +  QYRRLVGRL+YL +TRPD+ + V  LSQF+++    H + A  +LRY+K  P +
Sbjct: 1249 ELKDASQYRRLVGRLIYLTITRPDLVYAVHILSQFMDTPRQPHLDAAYKVLRYVKQTPGQ 1308

Query: 363  GLFYAADSPSSLTAYSDADWAACHDTRRSITGFCIFLGTSLISWKAKKQTTVSKSSAEAE 184
            G+F  +     LTAY DADWA C DTRRS TG+CIF G + ISWK KKQ TVS+SSAEAE
Sbjct: 1309 GIFLPSTGQLELTAYCDADWARCKDTRRSTTGYCIFFGNAPISWKTKKQGTVSRSSAEAE 1368

Query: 183  YRALSSTVCELQWVTYVAQDFHLRFPTLIPLLCDNQAALHIVANPVFHERTKHLDIDCHI 4
            YR++++T CE+ W+  +  D ++     + L CDNQAA+HI +NPVFHERTKH+++DCH+
Sbjct: 1369 YRSMATTCCEITWLRSLLADLNVNHAHAVKLFCDNQAAIHIASNPVFHERTKHIEMDCHV 1428

Query: 3    V 1
            V
Sbjct: 1429 V 1429


>gb|KYP36109.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1115

 Score =  765 bits (1976), Expect = 0.0
 Identities = 405/925 (43%), Positives = 558/925 (60%), Gaps = 15/925 (1%)
 Frame = -2

Query: 2730 QDLKTDHVLGIGKVVGSLYILDTQQTGGXXXXXXXXXXXXXXXXXVTTWHTRLGHASYGI 2551
            QD+ T  ++G   +   L+ LD     G                    WH RLGH S   
Sbjct: 152  QDMNTLKMIGSANLKEGLFHLDI----GKERRSSTNNATATPINNSNLWHFRLGHLSSNR 207

Query: 2550 L----EHLPFLKPHCNKGVEQSVKQCDICHISKQHRVPFSSSESHATALFDLIHVDVWGP 2383
            L    +  PF+  H N+        CD+CH +KQ ++ +S S S  + +FDLIH+D+WGP
Sbjct: 208  LNVLNQQFPFISKHSNE-------VCDVCHFAKQKKLSYSPSSSRVSKIFDLIHMDIWGP 260

Query: 2382 FHSGTLFYHTPYFLTIVDDYSRTTWTYLMTHKSQVYSLLHKYIQMVQTQFHKVIKIIRTD 2203
            F   ++  H  YFLTI+DD+SR TW  L+  KS+V + +H +I +V+ Q+   +K IR+D
Sbjct: 261  FSKASIHGHK-YFLTILDDFSRYTWVVLLKSKSEVKTHVHNFINLVENQYETKVKCIRSD 319

Query: 2202 NGTEFLNQNCKNLFEQHGILHHKSCTYTPQQNGVVERKHRHLLDTARALLFQSKLPIDFW 2023
            NG EF     ++ F   GI+H  SC YTPQQNG VERKH+H+L+ ARAL+FQSKLP +FW
Sbjct: 320  NGPEFF---LRDFFNSKGIIHQTSCVYTPQQNGRVERKHQHILNVARALMFQSKLPSNFW 376

Query: 2022 PFSLLTATYIINRIPLSTLHWKSPYEVLFNKLPNYNLLKPFGCAAYATNLLPHKHKFDAR 1843
             +++  A ++INR+P   +  K+P+E+L    P++++LK FGC  YA+     +HKF+ R
Sbjct: 377  SYAIKHAIFLINRVPSPIISHKTPFELLNKIPPDFSMLKVFGCLCYASTH-NQRHKFEPR 435

Query: 1842 AHKCIFVGYELGKKGYKLFDPATNKFLVTREAFFIETEFPSLPQRNDSTHLPHVSEPEHT 1663
            + K IF+G++ G KG+ + D  T + LV+R   F ET FP       S   P +++P  T
Sbjct: 436  SRKGIFMGFQNGTKGFVILDINTREILVSRNVIFHETSFPFHTSAPTS---PFITQPSLT 492

Query: 1662 XXXXXXXXXXXXXSHTDLHIALRKGPRRIHPPAKFADYVVYNAAAHLSPTPTEVITSGSF 1483
                         S  D   +    P     P+        + AA  SP    + +  + 
Sbjct: 493  ISPNPDILTTPPTSPNDTSPSQNPNPDASASPS--------SPAAPTSPFHDSISSYPTS 544

Query: 1482 TSQYSVP----TFPFFVSPHFSQ------PYVS-FLANVSSIREPTTYAQASDDPHWVEA 1336
            T    VP    + P    P  S+      PY+S +   + S++   +  ++  +P W EA
Sbjct: 545  TDFDIVPHHRSSSPAIPPPRRSERDIHPPPYLSEYQYKLPSLKSVQSSTRSIQNPCWREA 604

Query: 1335 MNKELDALESNHTWELTPLPQGKKAIGCKWVYKVKLNPDGTVDRYKARLVAKGYHQVHGV 1156
            M  EL ALE NHTW++   P   + IGCKWV+K+K  P+G+++RYKARLVAKGY Q+ G+
Sbjct: 605  MTCELKALELNHTWDVVETPSHVRPIGCKWVFKIKRLPNGSIERYKARLVAKGYSQIEGI 664

Query: 1155 DYLDSFSPVAKMVTVRMLIAIAATRGWELHQLDINNAFLHGYLDETIYMLPPAGYKKAKL 976
            DY ++FSPV KM TVR+++A+A+   W + QLD++NAFLHG L E +YM  P G      
Sbjct: 665  DYFETFSPVVKMTTVRVVLALASINQWHIQQLDVSNAFLHGDLLEDVYMELPQGLTGYSS 724

Query: 975  GEVCLLKRSLYGLKQASRQWNTEFCTKLLAFGFIQSVHDHCLFTKHSASSSMCLLVYVDD 796
               C L++SLYGLKQ+SR+W  +    LL+ G+ Q+  DH LFTK   S+   LL+YVDD
Sbjct: 725  SHSCKLRKSLYGLKQSSRKWYEKLSNLLLSNGYKQAHSDHSLFTKRHGSAFTALLIYVDD 784

Query: 795  VLVTGSNPDDIRDLKQYLDRLFTIKDLGAAKYFLGLELARSDAGIYLNQRKYILDILDDV 616
            +++TG++  +I  +K  L   F +KDLG  KYFLG+E+A S  GI L QRKY LD+L D 
Sbjct: 785  IVLTGNSAAEITRIKHILHSNFHVKDLGQLKYFLGIEVAHSSKGISLCQRKYCLDLLSDS 844

Query: 615  GLMGCKPASTPFPQGLKLVHGTDPPLSNPDQYRRLVGRLLYLNLTRPDITFCVQQLSQFI 436
            G++GCKP+STP    L+L       L +P  YRRLVGRL+YL  TRPDI F  QQLSQF+
Sbjct: 845  GMLGCKPSSTPMDSTLRLHDDASGYLDDPLPYRRLVGRLVYLTNTRPDIAFSTQQLSQFM 904

Query: 435  NSHCVAHWNVATHLLRYLKGCPSKGLFYAADSPSSLTAYSDADWAACHDTRRSITGFCIF 256
            +    AH   A  +LRYLK CP  GLF+    P  ++ +SDADWA C  +RRSITG+C F
Sbjct: 905  SKPTNAHHAAAMRVLRYLKSCPGTGLFFPRVCPIQVSGFSDADWATCVASRRSITGYCFF 964

Query: 255  LGTSLISWKAKKQTTVSKSSAEAEYRALSSTVCELQWVTYVAQDFHLRFPTLIPLLCDNQ 76
            +G +LISWK KKQTTVS+SS+EAEYRAL+S  CELQW+ Y+ +D H+    +  L CDN 
Sbjct: 965  IGNALISWKTKKQTTVSRSSSEAEYRALASATCELQWIIYLLRDLHISLSQISLLYCDNT 1024

Query: 75   AALHIVANPVFHERTKHLDIDCHIV 1
            +ALHI ANPVFHERTKHLDIDCHIV
Sbjct: 1025 SALHIAANPVFHERTKHLDIDCHIV 1049


>emb|CAN82526.1| hypothetical protein VITISV_028058 [Vitis vinifera]
          Length = 1125

 Score =  764 bits (1973), Expect = 0.0
 Identities = 424/926 (45%), Positives = 556/926 (60%), Gaps = 16/926 (1%)
 Frame = -2

Query: 2730 QDLKTDHVLGIGKVVGSLYIL-----DTQQTGGXXXXXXXXXXXXXXXXXVTT-WHTRLG 2569
            QDL T   +G+G+    LY L     +  +T                    T  WH RLG
Sbjct: 199  QDLTTRTTIGLGEQRDGLYYLVALASEKPKTQTPSAATTSCRSPSSQVTSSTALWHRRLG 258

Query: 2568 HASYGILEHLPFLKPHCNKGVEQSVKQCDICHISKQHRVPFSSSESHATALFDLIHVDVW 2389
            H S   L+   F+  H      QS   CD+C ++KQ ++PFS S   +   F+LIH D+W
Sbjct: 259  HLSSSRLD---FMAKHLLNFHFQSNNACDVCALAKQRQLPFSVSSISSVRPFELIHCDIW 315

Query: 2388 GPFHSGTLFYHTPYFLTIVDDYSRTTWTYLMTHKSQVYSLLHKYIQMVQTQFHKVIKIIR 2209
            GP+   +L     YFLTIVDDYSR T  + M HKS+   LL  +   VQTQFH  I  IR
Sbjct: 316  GPYKIASLS-GAKYFLTIVDDYSRFTXVFFMHHKSETQHLLVNFFSFVQTQFHVSIANIR 374

Query: 2208 TDNGTEFLNQNCKNLFEQHGILHHKSCTYTPQQNGVVERKHRHLLDTARALLFQSKLPID 2029
             DNG EF +   +  F+Q G  +  SC YTPQQNGVVERKHRH+L++ARA  FQ+ LP+ 
Sbjct: 375  VDNGGEFFSX--REFFKQKGTTYQHSCVYTPQQNGVVERKHRHILESARAFXFQAHLPLP 432

Query: 2028 FWPFSLLTATYIINRIPLSTLHWKSPYEVLFNKLPNYNLLKPFGCAAYATNL-LPHKHKF 1852
            FW   + TA +IINR+P   L  ++P+E L+ KLP+Y+ ++ FGC AYATN+ +PHK  F
Sbjct: 433  FWAECVSTAVHIINRLPTPLLSRQTPFERLYGKLPSYSHIRVFGCLAYATNVHVPHK--F 490

Query: 1851 DARAHKCIFVGYELGKKGYKLFDPATNKFLVTREAFFIETEFP----SLPQRNDSTHL-- 1690
              RA +CIF+GY +G+K YKL+D  T++   +R+  F ET FP      P  N    L  
Sbjct: 491  APRAKRCIFLGYPVGQKAYKLYDLDTHQMFTSRDVVFHETIFPYESIPSPSSNSDPFLLS 550

Query: 1689 PHVSEPEHTXXXXXXXXXXXXXSHTDLHIALRKGPRRIHPPAKFADYVVYNAAA--HLSP 1516
             H++ P                        LR+  R  HPP    DYV     +  HL P
Sbjct: 551  HHLASPPPEPI-------------------LRRSQRPHHPPMALRDYVCNQVTSPNHLPP 591

Query: 1515 TPTEVITSGSFTSQYSVPTFPFFVSPH-FSQPYVSFLANVSSIREPTTYAQASDDPHWVE 1339
                + +S    ++Y +  F   VS H +S  + SF A VS   EPT+YA+A+   HW E
Sbjct: 592  ----LSSSPQKGTRYPLCNF---VSYHRYSPQHRSFTAAVSQDIEPTSYAEATSHSHWQE 644

Query: 1338 AMNKELDALESNHTWELTPLPQGKKAIGCKWVYKVKLNPDGTVDRYKARLVAKGYHQVHG 1159
            AM  EL  LE+NHTW LT LP GKK IGC+WVYK+K + DGT++R+KARLVAKGY Q+ G
Sbjct: 645  AMQSELATLEANHTWSLTSLPPGKKPIGCRWVYKIKXHSDGTIERFKARLVAKGYTQLEG 704

Query: 1158 VDYLDSFSPVAKMVTVRMLIAIAATRGWELHQLDINNAFLHGYLDETIYMLPPAGYKKAK 979
            +DY D+FSP AKM+ VR L+A+AA + W LHQLD              +M PP   ++  
Sbjct: 705  IDYHDTFSPTAKMIXVRCLLALAAAQNWSLHQLDK-------------FMSPPPSLRRQG 751

Query: 978  LGEVCLLKRSLYGLKQASRQWNTEFCTKLLAFGFIQSVHDHCLFTKHSASSSMCLLVYVD 799
               VC L +SLYGLKQASRQW  +F T + A GFIQS  D+ LFT     S   LL+YVD
Sbjct: 752  ENLVCHLHKSLYGLKQASRQWFAKFSTAIQAVGFIQSKADYSLFTCRKGKSFTALLIYVD 811

Query: 798  DVLVTGSNPDDIRDLKQYLDRLFTIKDLGAAKYFLGLELARSDAGIYLNQRKYILDILDD 619
            D+L+TG++ + I  LKQ+L   F IKDLG  KYFLG+E++RS  GI ++QRKY L+IL D
Sbjct: 812  DILITGNDVNAIVALKQFLHSHFRIKDLGDLKYFLGIEVSRSKKGISISQRKYTLEILKD 871

Query: 618  VGLMGCKPASTPFPQGLKLVHGTDPPLSNPDQYRRLVGRLLYLNLTRPDITFCVQQLSQF 439
             G +G KP + P  Q  KL    +  L  P QYRRLVGRL+YL +TRPDIT+ V  LS+F
Sbjct: 872  GGFLGAKPVNFPMEQNTKLSDSGEL-LKGPSQYRRLVGRLIYLTITRPDITYSVHVLSRF 930

Query: 438  INSHCVAHWNVATHLLRYLKGCPSKGLFYAADSPSSLTAYSDADWAACHDTRRSITGFCI 259
            +++    H   A  +LRYLK  P +GLF+ + +  SL A+SD DWA C  +RRS TG+C+
Sbjct: 931  MHAPRRPHMEAALRVLRYLKNSPGQGLFFPSQNDLSLRAFSDXDWAGCPISRRSXTGYCV 990

Query: 258  FLGTSLISWKAKKQTTVSKSSAEAEYRALSSTVCELQWVTYVAQDFHLRFPTLIPLLCDN 79
            FLG+SLISW+ K+Q TVS SS EAEYRA++ T CEL W+  + +D  +  P    L CDN
Sbjct: 991  FLGSSLISWRTKRQKTVSLSSXEAEYRAMAGTCCELSWLRSLLKDLRILHPKPALLYCDN 1050

Query: 78   QAALHIVANPVFHERTKHLDIDCHIV 1
             AALHI  NPVFHERT+H+++DCH +
Sbjct: 1051 TAALHIAVNPVFHERTRHIEMDCHFI 1076


>gb|KYP64985.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1394

 Score =  770 bits (1989), Expect = 0.0
 Identities = 393/884 (44%), Positives = 549/884 (62%), Gaps = 22/884 (2%)
 Frame = -2

Query: 2586 WHTRLGHASYGILEHLPFLKPHCNKGVEQSVKQCDICHISKQHRVPFSSSESHATALFDL 2407
            WH RLGH S  IL+    L    N  + ++   CD CH +K  ++PF    S ++ LF+L
Sbjct: 471  WHHRLGHTSNSILQ---LLSSQYNDIIYKNCTPCDTCHFAKHKKLPFPVCISKSSHLFEL 527

Query: 2406 IHVDVWGPFHSGTLFYHTPYFLTIVDDYSRTTWTYLMTHKSQVYSLLHKYIQMVQTQFHK 2227
            +H D+WGP H+ ++  H  YFLT+VDD+SR TW +L+  K++V ++L K+I +++ QF  
Sbjct: 528  LHADIWGPLHTISIDGHK-YFLTLVDDFSRFTWVHLLKSKAEVKTVLPKFIHLIENQFGI 586

Query: 2226 VIKIIRTDNGTEFLNQNCKNLFEQHGILHHKSCTYTPQQNGVVERKHRHLLDTARALLFQ 2047
             +K +R+DNG EF      + F   GI H  SC  TPQQNG+VERKH+H+L+ ARALLFQ
Sbjct: 587  KLKRLRSDNGKEFF---LTDFFSSKGIFHETSCIETPQQNGIVERKHQHILNVARALLFQ 643

Query: 2046 SKLPIDFWPFSLLTATYIINRIPLSTLHWKSPYEVLFNKLPNYNLLKPFGCAAYATNLLP 1867
            S L   FW +++  A ++INR+P   L  KSPYE +F K+P+ + L+ FGC A+A  +  
Sbjct: 644  SGLSSVFWSYAIKHAVHLINRLPTPFLENKSPYESVFGKIPDLSTLRVFGCLAFANTITS 703

Query: 1866 HKHKFDARAHKCIFVGYELGKKGYKLFDPATNKFLVTREAFFIETEFP----SLPQRNDS 1699
               K D RA KCIF+G++ G KGY LF+  T  FL++R   F E+ FP    S    N+ 
Sbjct: 704  GITKLDKRASKCIFLGFKPGVKGYLLFNLTTKSFLLSRNVIFYESHFPYASNSPSVSNNH 763

Query: 1698 THLPHVSEPEHTXXXXXXXXXXXXXSHTDLHIALRKGPRRIHPPAKFADYVVYNAAAHLS 1519
            T     S+                 + T   ++       + P  +F D    N A  + 
Sbjct: 764  TTGTTASQQSFDSLIAFDIISAIPNNVTSDIVSSNIDHNAVEPVLQFND--DSNDAVQIV 821

Query: 1518 PTPTEVIT----SGSFTSQYSVPTF--------------PFFVSPHFSQPYVSFLANVSS 1393
              PT + T      ++ S Y  PT                +    + S  + +F  ++S+
Sbjct: 822  DQPTRISTRPRKPPAYLSDYDCPTLSSANTSCCTPYPLHSYLSYSNCSDSHTAFCMSLSA 881

Query: 1392 IREPTTYAQASDDPHWVEAMNKELDALESNHTWELTPLPQGKKAIGCKWVYKVKLNPDGT 1213
              EPT++ +A    HW +AM  E+ ALE N TW L  LP  K+ +GCKWVYK KLN DG+
Sbjct: 882  TIEPTSFKEACKHDHWQQAMLAEIQALERNKTWSLVRLPPKKRVVGCKWVYKTKLNADGS 941

Query: 1212 VDRYKARLVAKGYHQVHGVDYLDSFSPVAKMVTVRMLIAIAATRGWELHQLDINNAFLHG 1033
            ++R+KARLVAKG+ Q  G+D+ ++FSPV K+ TVR L+++A +  W LHQLD++NAFLHG
Sbjct: 942  IERHKARLVAKGFTQTEGMDFFETFSPVVKLTTVRFLLSVAVSHNWFLHQLDVDNAFLHG 1001

Query: 1032 YLDETIYMLPPAGYKKAKLGEVCLLKRSLYGLKQASRQWNTEFCTKLLAFGFIQSVHDHC 853
             LD  +YM PP G    +   VC L +SLYGL+QASRQ N++  + L+++GF QS  DH 
Sbjct: 1002 DLDVEVYMKPPPGLILPEPHLVCKLHKSLYGLRQASRQGNSKLTSALISYGFSQSPADHS 1061

Query: 852  LFTKHSASSSMCLLVYVDDVLVTGSNPDDIRDLKQYLDRLFTIKDLGAAKYFLGLELARS 673
            LF +HS++S   LLVYVDD+++TG +  DI  +K++L   F IKDLG  K FLG ++ARS
Sbjct: 1062 LFIRHSSTSFTALLVYVDDIVLTGDSIQDIVAVKKFLHHEFRIKDLGNLKLFLGFDVARS 1121

Query: 672  DAGIYLNQRKYILDILDDVGLMGCKPASTPFPQGLKLVHGTDPPLSNPDQYRRLVGRLLY 493
              G+ LNQRKY LDIL + G  GCKPA++P    +KL       + +P  YRRL+G+L Y
Sbjct: 1122 QQGLILNQRKYCLDILAEFGFTGCKPANSPSNPTVKLKDDEGDLVQDPTAYRRLIGKLQY 1181

Query: 492  LNLTRPDITFCVQQLSQFINSHCVAHWNVATHLLRYLKGCPSKGLFYAADSPSSLTAYSD 313
            L  TRPDI+F VQQ+SQF++    +H N A  +L+YLKGCP  GLFY + +P  + A+SD
Sbjct: 1182 LTNTRPDISFAVQQVSQFMSKPRYSHLNAAFRILKYLKGCPGLGLFYPSANPHRIQAFSD 1241

Query: 312  ADWAACHDTRRSITGFCIFLGTSLISWKAKKQTTVSKSSAEAEYRALSSTVCELQWVTYV 133
            +DWA C  TR+S TG+C+F G  LISWK+KKQ+TVS+SS EAEYRAL+S  CELQW+ YV
Sbjct: 1242 SDWATCCITRKSTTGYCVFYGNCLISWKSKKQSTVSRSSTEAEYRALASVACELQWLKYV 1301

Query: 132  AQDFHLRFPTLIPLLCDNQAALHIVANPVFHERTKHLDIDCHIV 1
            A D  L+ P   P  CDNQ+A+ +  NP FHERTKH+++DCH++
Sbjct: 1302 ADDLCLQIPLPFPTFCDNQSAIQLAKNPSFHERTKHIEVDCHLI 1345


>gb|KYP39497.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1445

 Score =  764 bits (1972), Expect = 0.0
 Identities = 399/882 (45%), Positives = 545/882 (61%), Gaps = 18/882 (2%)
 Frame = -2

Query: 2592 TTWHTRLGHASYGILEHLPFLKPHCNKGVEQSVKQCDICHISKQHRVPFSSSESHATALF 2413
            + WH +LGH S  +L+ L          +   V  CDIC  +KQ ++PF  S S     F
Sbjct: 536  SVWHAKLGHPSNKVLQTLSSQYTSIKFPL---VHVCDICSFAKQKKLPFPDSTSITNFFF 592

Query: 2412 DLIHVDVWGPFHSGTLFYHTPYFLTIVDDYSRTTWTYLMTHKSQVYSLLHKYIQMVQTQF 2233
            +LIHVD+WGP    ++  +  YFLT+VDDYSR TW +L+  K +V SLL  +I +++ Q 
Sbjct: 593  ELIHVDIWGPLAISSIEGYK-YFLTVVDDYSRFTWIHLLKSKQEVKSLLPNFIILIENQH 651

Query: 2232 HKVIKIIRTDNGTEFLNQNCKNLFEQHGILHHKSCTYTPQQNGVVERKHRHLLDTARALL 2053
               +K +R+DNG EF+     N +   GILH  SC  TPQQNG+VERKH+HLL+  RALL
Sbjct: 652  DCKLKRLRSDNGKEFI---LTNFYNAKGILHETSCVETPQQNGIVERKHQHLLNVCRALL 708

Query: 2052 FQSKLPIDFWPFSLLTATYIINRIPLSTLHWKSPYEVLFNKLPNYNLLKPFGCAAYATNL 1873
            FQS++P  FW +++  A +IINR+P   L  KSP+E++++  P+ + L+ FGC AYA+ L
Sbjct: 709  FQSQIPKTFWSYAIKHAVHIINRLPTRFLKQKSPFEMIYHHKPDLHDLRVFGCLAYASTL 768

Query: 1872 LPHKHKFDARAHKCIFVGYELGKKGYKLFDPATNKFLVTREAFFIETEFPS--------- 1720
               + K   RA KCIF+GY+ G KGY L++  +  F ++R   F ET FP          
Sbjct: 769  AAGRTKLAPRASKCIFLGYKSGTKGYVLYNLHSRFFSLSRNVIFHETVFPYSDFHKFSSN 828

Query: 1719 -----LPQRNDSTHLP----HVSEPEHTXXXXXXXXXXXXXSHTDLHIALRKGPRRIHPP 1567
                     ND  H       V E  +T                D+ +  R   R+   P
Sbjct: 829  SDAILTESTNDFAHYELYPITVLETTNTHTPSEQLQQPLTEEMQDIPVQPRVSTRQKFRP 888

Query: 1566 AKFADYVVYNAAAHLSPTPTEVITSGSFTSQYSVPTFPFFVSPHFSQPYVSFLANVSSIR 1387
                 Y  Y+A            TS +    Y  P   +      S  Y +F  ++S+  
Sbjct: 889  NYLNQYHCYSA------------TSSNSACLY--PLHSYLSYNKCSSNYTAFCLSISAHV 934

Query: 1386 EPTTYAQASDDPHWVEAMNKELDALESNHTWELTPLPQGKKAIGCKWVYKVKLNPDGTVD 1207
            EP+ YAQA     W +AM  ELDAL  N TW L  LP G+K IGCKWVY++K   DG+VD
Sbjct: 935  EPSNYAQAITQDCWKQAMMTELDALNRNRTWSLVSLPPGRKLIGCKWVYRIKYKADGSVD 994

Query: 1206 RYKARLVAKGYHQVHGVDYLDSFSPVAKMVTVRMLIAIAATRGWELHQLDINNAFLHGYL 1027
            R+KARLVAKG+ Q  G+DY ++FSPVAK+ TVR L+A+A+T  W LHQLD++NAFLHG L
Sbjct: 995  RHKARLVAKGFTQTEGIDYFETFSPVAKLTTVRFLLALASTNNWFLHQLDVDNAFLHGDL 1054

Query: 1026 DETIYMLPPAGYKKAKLGEVCLLKRSLYGLKQASRQWNTEFCTKLLAFGFIQSVHDHCLF 847
            +E +YM PP G +      VC L++SLYGLKQASR WN +  ++LL  G+ QS  DH LF
Sbjct: 1055 EEEVYMRPPQGLQLPDSKLVCKLEKSLYGLKQASRNWNQKLNSELLHLGYKQSSADHSLF 1114

Query: 846  TKHSASSSMCLLVYVDDVLVTGSNPDDIRDLKQYLDRLFTIKDLGAAKYFLGLELARSDA 667
             K   SS   LLVYVDDV+++G+N  +I+ +KQ+L + F IKDLG  K+FLGLE+ARS  
Sbjct: 1115 IKKQGSSITILLVYVDDVVLSGNNFSEIQIVKQHLHQKFQIKDLGPLKFFLGLEVARSKK 1174

Query: 666  GIYLNQRKYILDILDDVGLMGCKPASTPFPQGLKLVHGTDPPLSNPDQYRRLVGRLLYLN 487
            GI LNQRKY L+++D+ GL+G KPA TP    +KL       L++P  +RRL+GRLLYL 
Sbjct: 1175 GIILNQRKYCLELIDESGLLGSKPAPTPADPAIKLHADHGSLLNDPTSFRRLIGRLLYLT 1234

Query: 486  LTRPDITFCVQQLSQFINSHCVAHWNVATHLLRYLKGCPSKGLFYAADSPSSLTAYSDAD 307
             TRPDI+F VQQLSQF++     H   A  ++RYLKG P  GLFY A++   + A+SD+D
Sbjct: 1235 NTRPDISFSVQQLSQFVSQPREPHLQAALRIVRYLKGAPGLGLFYPAENHLRIQAFSDSD 1294

Query: 306  WAACHDTRRSITGFCIFLGTSLISWKAKKQTTVSKSSAEAEYRALSSTVCELQWVTYVAQ 127
            WA C  TR+S+TG+C+FLG SL+SWK+KKQ+TVS+SS+EAEYRAL+S  CELQW+ +++ 
Sbjct: 1295 WATCSTTRKSVTGYCVFLGKSLVSWKSKKQSTVSRSSSEAEYRALASLTCELQWLKFLSD 1354

Query: 126  DFHLRFPTLIPLLCDNQAALHIVANPVFHERTKHLDIDCHIV 1
               ++ P    +  D+Q+A+ I  NP FHERTKH+++DCH++
Sbjct: 1355 SLFVKIPAPFSVFSDSQSAIQIAKNPTFHERTKHIEVDCHLI 1396


>gb|KYP55668.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1136

 Score =  747 bits (1928), Expect = 0.0
 Identities = 395/873 (45%), Positives = 539/873 (61%), Gaps = 11/873 (1%)
 Frame = -2

Query: 2586 WHTRLGHASYGILEHL----PFLKPHCNKGVEQSVKQCDICHISKQHRVPFSSSESHATA 2419
            WH R+GH S   L+ +    PFL       V++S   C+ CH  KQ ++ F  S S+A  
Sbjct: 233  WHFRMGHLSQERLQLMKQSFPFLS------VDKSFS-CNTCHHDKQKKLSFPLSHSYALQ 285

Query: 2418 LFDLIHVDVWGPFHSGTLFYHTPYFLTIVDDYSRTTWTYLMTHKSQVYSLLHKYIQMVQT 2239
             FDL+H+D+WGP    ++  H  YFL IVDD++R TW +LM +KS+    +  +I  V+T
Sbjct: 286  PFDLLHMDIWGPCPVTSMHGHK-YFLAIVDDHTRFTWLFLMQNKSETRQHIINFINQVET 344

Query: 2238 QFHKVIKIIRTDNGTEFLNQNCKNLFEQHGILHHKSCTYTPQQNGVVERKHRHLLDTARA 2059
            QF K +K+IRTDNG EF   +    F   GI+H  +C  TPQQNG+VERKH+HLL+  R+
Sbjct: 345  QFDKNVKVIRTDNGLEF---SMTQYFSSKGIIHQTTCVETPQQNGIVERKHQHLLNVTRS 401

Query: 2058 LLFQSKLPIDFWPFSLLTATYIINRIPLSTLHWKSPYEVLFNKLPNYNLLKPFGCAAYAT 1879
            LLFQ+ LP  FW F+L  A ++IN IP   LH  SP+E L+    + ++L+ FGC  Y++
Sbjct: 402  LLFQANLPSIFWCFALKHAAFLINCIPTPFLHNISPFEKLYGHPCDISILRVFGCLCYSS 461

Query: 1878 NLLPHKHKFDARAHKCIFVGYELGKKGYKLFDPATNKFLVTREAFFIETEFPSLPQRNDS 1699
             +  H+ K D RAH CIF+G++   KGY L +  T+  LV++   F E  FPS  + N  
Sbjct: 462  IITSHRTKLDPRAHPCIFLGFKPHTKGYLLVNLHTHGLLVSQNVIFHEDHFPSFTKPNSP 521

Query: 1698 THLPHVSEP----EHTXXXXXXXXXXXXXSHTDLHIA---LRKGPRRIHPPAKFADYVVY 1540
            +    V  P    ++                 D H +   LR+  R   PP    D+  +
Sbjct: 522  SFSSPVPIPYNYADYPSFPSSSIVESSEPPPPDQHSSPPPLRRSTRPRRPPTYLQDF--H 579

Query: 1539 NAAAHLSPTPTEVITSGSFTSQYSVPTFPFFVSPHFSQPYVSFLANVSSIREPTTYAQAS 1360
             A     P  +  I           P   F      S  +  ++ ++SS+ +P  + +AS
Sbjct: 580  GAFTSTGPHSSTGIRH---------PLHSFISYDRLSPSFHHYVFSISSVTKPKNFVEAS 630

Query: 1359 DDPHWVEAMNKELDALESNHTWELTPLPQGKKAIGCKWVYKVKLNPDGTVDRYKARLVAK 1180
                W++AM++E+ ALE+N+TW LT LP  K AIGC+WVYKVK   DG++DRYKARLVAK
Sbjct: 631  KSDSWLKAMHEEISALEANNTWVLTTLPPHKTAIGCRWVYKVKHKADGSIDRYKARLVAK 690

Query: 1179 GYHQVHGVDYLDSFSPVAKMVTVRMLIAIAATRGWELHQLDINNAFLHGYLDETIYMLPP 1000
            GY Q+ G+D+ D+FSPVAK+ TVR+LI++AA     L QLD+NN+FLHG L+E +YM  P
Sbjct: 691  GYTQMEGLDFFDTFSPVAKLTTVRLLISLAAIHNCHLKQLDVNNSFLHGDLNEEVYMQLP 750

Query: 999  AGYKKAKLGEVCLLKRSLYGLKQASRQWNTEFCTKLLAFGFIQSVHDHCLFTKHSASSSM 820
             G   +  G+VC L+RSLYGLKQASRQW     + L+  G++ S  DH LF K S + + 
Sbjct: 751  PGITPSFPGQVCRLQRSLYGLKQASRQWYARLSSFLIQHGYVPSPSDHSLFLKCSPAITT 810

Query: 819  CLLVYVDDVLVTGSNPDDIRDLKQYLDRLFTIKDLGAAKYFLGLELARSDAGIYLNQRKY 640
             +L+YVDD+++ G++  +I  L   L   F IKDLG  KYFLGLE+AR+  GI+L QRKY
Sbjct: 811  AILIYVDDIVLAGNDLTEIHHLTSLLHNTFQIKDLGNLKYFLGLEVARNHTGIHLCQRKY 870

Query: 639  ILDILDDVGLMGCKPASTPFPQGLKLVHGTDPPLSNPDQYRRLVGRLLYLNLTRPDITFC 460
             LD+L D G++  KP STP      L   +  P ++   YRRLVGRL+YL  TRP I + 
Sbjct: 871  TLDLLSDTGMLASKPVSTPMDYSTHLSASSGTPFTDTAAYRRLVGRLIYLPNTRPAIAYA 930

Query: 459  VQQLSQFINSHCVAHWNVATHLLRYLKGCPSKGLFYAADSPSSLTAYSDADWAACHDTRR 280
            VQQLSQF+++   AH      +L YLKG P  G+F + +S   L A+SD DWA C DTRR
Sbjct: 931  VQQLSQFVSNPPTAHRQALFRILCYLKGTPGSGIFLSVNSSVQLRAFSDYDWAGCPDTRR 990

Query: 279  SITGFCIFLGTSLISWKAKKQTTVSKSSAEAEYRALSSTVCELQWVTYVAQDFHLRFPTL 100
            SITGF ++LG SLISWK+KKQ TVS+SS+EAEYRAL++T CELQW++Y+ +DFH+     
Sbjct: 991  SITGFAVYLGDSLISWKSKKQITVSRSSSEAEYRALATTTCELQWLSYLLKDFHIDLIRP 1050

Query: 99   IPLLCDNQAALHIVANPVFHERTKHLDIDCHIV 1
              L CDNQ AL I +NP+FHERTKH++IDCHIV
Sbjct: 1051 SILYCDNQFALQIASNPIFHERTKHIEIDCHIV 1083


>gb|KYP70921.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1352

 Score =  748 bits (1931), Expect = 0.0
 Identities = 399/877 (45%), Positives = 531/877 (60%), Gaps = 15/877 (1%)
 Frame = -2

Query: 2586 WHTRLGHASYGILEHLPFLKP--HCNKGVEQSVKQCDICHISKQHRVPFSSSESHATALF 2413
            WH RLGH  Y  L  +    P  + NK        C+ CH +KQ ++ F  S SHA   F
Sbjct: 443  WHFRLGHLPYDKLHSMKQYYPCLYSNKHFT-----CNTCHHAKQKKLSFPLSHSHALQSF 497

Query: 2412 DLIHVDVWGPFHSGTLFYHTPYFLTIVDDYSRTTWTYLMTHKSQVYSLLHKYIQMVQTQF 2233
             L+H+D+WGP    ++  H  YFLTIVDD++R TW +LM  K+   + +  +I  ++ QF
Sbjct: 498  ALLHIDIWGPCSKTSIHGHR-YFLTIVDDHTRYTWVFLMASKADTCNCVTNFISHIENQF 556

Query: 2232 HKVIKIIRTDNGTEFLNQNCKNLFEQHGILHHKSCTYTPQQNGVVERKHRHLLDTARALL 2053
               +K+IRTDNG EF   +  N F+  GI+H  +C  TP+QN +VERKH+HLL+  RALL
Sbjct: 557  ATRVKVIRTDNGAEF---SMNNYFDSKGIIHQTTCIETPEQNRIVERKHQHLLNVTRALL 613

Query: 2052 FQSKLPIDFWPFSLLTATYIINRIPLSTLHWKSPYEVLFNKLPNYNLLKPFGCAAYATNL 1873
            FQS LP  FW F+L+ ATYIIN IP   L   SP+E L  K  +   L+ FGC  Y + L
Sbjct: 614  FQSNLPPTFWNFALMHATYIINCIPTPFLQHTSPFENLNGKPCDITTLRVFGCLCYVSTL 673

Query: 1872 LPHKHKFDARAHKCIFVGYELGKKGYKLFDPATNKFLVTREAFFIETEFPSLPQRNDS-T 1696
              H+ K D RA  C+F+G++   KGY  F+  T    V+R   F E  FP   Q   S +
Sbjct: 674  KAHRTKLDPRASPCVFLGFQPHTKGYLTFNLNTRSIEVSRNVVFYENHFPYFTQDTQSAS 733

Query: 1695 HLPHVSEP--EHTXXXXXXXXXXXXXSHTDLHIALRKGP----------RRIHPPAKFAD 1552
              P +  P   +              SH    ++  + P          R  HPP+   D
Sbjct: 734  STPSLPTPFTSNPMIHDYNFYPPSPSSHPPHSLSSPESPTSSPIPSRPTRSRHPPSYLRD 793

Query: 1551 YVVYNAAAHLSPTPTEVITSGSFTSQYSVPTFPFFVSPHFSQPYVSFLANVSSIREPTTY 1372
            Y       H++ T T   +S         P          S P+  F+ ++S + EP +Y
Sbjct: 794  Y-------HMTFTSTGPSSSPGIR----YPLDSVISYNRLSHPFRHFIMSISLLTEPKSY 842

Query: 1371 AQASDDPHWVEAMNKELDALESNHTWELTPLPQGKKAIGCKWVYKVKLNPDGTVDRYKAR 1192
            A+AS    W++AM  E+ ALE+N+TW +T LP  K AIGCKW+YKVK + DG+V+R+KAR
Sbjct: 843  AEASKSDCWIKAMTDEITALEANNTWTVTSLPPHKTAIGCKWIYKVKHHADGSVERHKAR 902

Query: 1191 LVAKGYHQVHGVDYLDSFSPVAKMVTVRMLIAIAATRGWELHQLDINNAFLHGYLDETIY 1012
            LVAKGY Q+ G+D+LD+F+PVAK+ TV +L+++AA   W L QLDINNAFLHG L+E +Y
Sbjct: 903  LVAKGYTQLEGLDFLDTFAPVAKLTTVHLLLSLAAIHNWFLKQLDINNAFLHGDLNEEVY 962

Query: 1011 MLPPAGYKKAKLGEVCLLKRSLYGLKQASRQWNTEFCTKLLAFGFIQSVHDHCLFTKHSA 832
            M  P G      G+VC L RSLYGLKQASRQW     T ++  GF  S  DH LF K + 
Sbjct: 963  MHLPPGLTTTTPGQVCKLNRSLYGLKQASRQWYARLSTFIMQQGFHHSSADHSLFLKFTN 1022

Query: 831  SSSMCLLVYVDDVLVTGSNPDDIRDLKQYLDRLFTIKDLGAAKYFLGLELARSDAGIYLN 652
            S+   LLVYVDD+++ G++  +I  +   L + F IKDLG   YFLGLE+AR+   I+L 
Sbjct: 1023 SACTALLVYVDDIVLAGNDLTEIHQITALLHKTFKIKDLGDLTYFLGLEVARNSIEIHLC 1082

Query: 651  QRKYILDILDDVGLMGCKPASTPFPQGLKLVHGTDPPLSNPDQYRRLVGRLLYLNLTRPD 472
            QRKY LDIL D G++ C P+ST       L   T  PL++P  YR+L+GRL+YL  T PD
Sbjct: 1083 QRKYTLDILSDTGMLACCPSSTLMDYKAALSSDTGTPLTDPSAYRQLIGRLIYLTNTHPD 1142

Query: 471  ITFCVQQLSQFINSHCVAHWNVATHLLRYLKGCPSKGLFYAADSPSSLTAYSDADWAACH 292
            IT  VQ LSQF +     H + A  +LRYLK  P +G+F +A+S   L ++SD+DWA C 
Sbjct: 1143 ITHAVQHLSQFASKPTTYHQHAAFRILRYLKQAPGRGIFLSANSSLQLKSFSDSDWAGCM 1202

Query: 291  DTRRSITGFCIFLGTSLISWKAKKQTTVSKSSAEAEYRALSSTVCELQWVTYVAQDFHLR 112
            DTRRSITGF ++LG SLISWK+KKQ TVS+SS+EAEYRAL+ST CE+QW+TY+ +DF L+
Sbjct: 1203 DTRRSITGFAVYLGHSLISWKSKKQATVSRSSSEAEYRALASTSCEIQWLTYLLEDFRLQ 1262

Query: 111  FPTLIPLLCDNQAALHIVANPVFHERTKHLDIDCHIV 1
            F     L CDNQ+ L I  N VFHERTKH++IDCH+V
Sbjct: 1263 FIRPALLYCDNQSVLQIACNQVFHERTKHIEIDCHLV 1299


>dbj|BAB10503.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1475

 Score =  748 bits (1931), Expect = 0.0
 Identities = 402/925 (43%), Positives = 554/925 (59%), Gaps = 16/925 (1%)
 Frame = -2

Query: 2730 QDLKTDHVLGIGKVVGSLYILDTQQ---TGGXXXXXXXXXXXXXXXXXVTTWHTRLGHAS 2560
            QD   +  +G G  +G LY+LDT     T                      WH+RLGH S
Sbjct: 535  QDPIKEQKIGRGNQIGGLYVLDTSSVECTSVDINSSVTEKQYCNAVVDSALWHSRLGHPS 594

Query: 2559 Y---GILEHLPFLKPHCNKGVEQSVKQCDICHISKQHRVPFSSSESHATALFDLIHVDVW 2389
            Y    +L  +  L P  NK   + +  C IC  +KQ  + F S  + +   FDLIH+D W
Sbjct: 595  YEKNDVLHDVLGL-PKRNK---EDLVHCSICQKAKQKHLSFPSKNNMSENKFDLIHIDTW 650

Query: 2388 GPFHSGTLFYHTPYFLTIVDDYSRTTWTYLMTHKSQVYSLLHKYIQMVQTQFHKVIKIIR 2209
            GPF + T   +  YFLTIVDDYSR TW YLM  K+ V  +   +++MV+TQ+  ++K +R
Sbjct: 651  GPFATPTTEGYK-YFLTIVDDYSRATWVYLMKAKNDVLQIFPDFLKMVETQYGTLVKAVR 709

Query: 2208 TDNGTEFLNQNCKNLFEQHGILHHKSCTYTPQQNGVVERKHRHLLDTARALLFQSKLPID 2029
            +DN  E      + L++  GI+ + SC  TPQQN VVERKH+H+L+ ARAL+F++ +P++
Sbjct: 710  SDNAPEL---RFEALYQAKGIISYHSCPETPQQNSVVERKHQHILNVARALMFEANMPLE 766

Query: 2028 FWPFSLLTATYIINRIPLSTLHWKSPYEVLFNKLPNYNLLKPFGCAAYATNLLPHKHKFD 1849
            FW   +L+A ++INR+P   L  KSP+E+L  K+P+Y  LK FGC  Y +     +HKF 
Sbjct: 767  FWGDCILSAVFLINRLPTPLLSNKSPFELLHLKVPDYTSLKVFGCLCYESTSPQQRHKFA 826

Query: 1848 ARAHKCIFVGYELGKKGYKLFDPATNKFLVTREAFFIETEFPSLPQRNDSTHLPH----V 1681
             RA  C+F+GY  G KGYKL D  TN   ++R   F ET FP      D T +P     +
Sbjct: 827  PRARACVFLGYPSGYKGYKLLDLETNTIHISRHVVFYETVFPF----TDKTIIPRDVFDL 882

Query: 1680 SEPEHTXXXXXXXXXXXXXSHTDLHIALRKGPRRIHPPAKFADYVVYNAAAHLSPTPTEV 1501
             +P H                T          R   PP    DY   NA   +       
Sbjct: 883  VDPVHENIENPPS--------TSESAPKVSSKRESRPPGYLQDYFC-NAVPDV------- 926

Query: 1500 ITSGSFTSQYSVPTFPFFVSPHFSQPYVSFLANVSSIREPTTYAQASDDPHWVEAMNKEL 1321
                  T     P   +      S+ + +++  V+   EP TYAQA     W++AM  E+
Sbjct: 927  ------TKDVRYPLNAYINYTQLSEEFTAYICAVNKYPEPCTYAQAKKIKEWLDAMEIEI 980

Query: 1320 DALESNHTWELTPLPQGKKAIGCKWVYKVKLNPDGTVDRYKARLVAKGYHQVHGVDYLDS 1141
            DALES +TW +  LPQGKK IGCKWV+KVKLN DG+++R+KARLVAKGY Q  G+DY D+
Sbjct: 981  DALESTNTWSVCSLPQGKKPIGCKWVFKVKLNADGSLERFKARLVAKGYTQREGLDYYDT 1040

Query: 1140 FSPVAKMVTVRMLIAIAATRGWELHQLDINNAFLHGYLDETIYMLPPAGYKKAKLG---- 973
            FSPVAKM TV+ L+++AA + W LHQLDI+NAFL+G L E IYM  P GY   + G    
Sbjct: 1041 FSPVAKMTTVKTLLSVAAIKEWSLHQLDISNAFLNGDLKEEIYMTLPPGYSMKQGGVLPQ 1100

Query: 972  -EVCLLKRSLYGLKQASRQWNTEFCTKLLAFGFIQSVHDHCLFTKHSASSSMCLLVYVDD 796
              V  L++SLYGLKQASRQW  +F + L   GF +S  DH LFT+ S  + + LLVYVDD
Sbjct: 1101 NPVLKLQKSLYGLKQASRQWYLKFSSTLKKLGFKKSHADHTLFTRISGKAYIALLVYVDD 1160

Query: 795  VLVTGSNPDDIRDLKQYLDRLFTIKDLGAAKYFLGLELARSDAGIYLNQRKYILDILDDV 616
            +++ G+N ++I +LK+ L + F ++DLG  KYFLGLE+AR+  GI + QRKY +++L+D 
Sbjct: 1161 IVIAGNNDENIEELKKDLAKAFKLRDLGPMKYFLGLEIARTKEGISVCQRKYTMELLEDT 1220

Query: 615  GLMGCKPASTPFPQGLKLV-HGTDPPLSNPDQYRRLVGRLLYLNLTRPDITFCVQQLSQF 439
            GL+GC+P++ P    LKL  H  +  + NP+ YRRLVG+L+YL +TRPDIT+ + +L QF
Sbjct: 1221 GLLGCRPSTIPMEPSLKLSQHNDEHVIDNPEVYRRLVGKLMYLTITRPDITYAINRLCQF 1280

Query: 438  INSHCVAHWNVATHLLRYLKGCPSKGLFYAADSPSSLTAYSDADWAACHDTRRSITGFCI 259
             +S   +H   A  ++ YLKG    GLFY++ S   L AY+DADW +C D+RRS +G C+
Sbjct: 1281 SSSPKNSHLKAAQKVVHYLKGTIGLGLFYSSKSDLCLKAYTDADWGSCVDSRRSTSGICM 1340

Query: 258  FLGTSLISWKAKKQTTVSKSSAEAEYRALSSTVCELQWVTYVAQDFHLRFPTLIPLLCDN 79
            FLG SLISWK+KKQ   S SSAE+EYRA++    E+ W+  +  +F ++    +PL CD+
Sbjct: 1341 FLGDSLISWKSKKQNMASSSSAESEYRAMAMGSREIAWLVKLLAEFQVKQTKPVPLFCDS 1400

Query: 78   QAALHIVANPVFHERTKHLDIDCHI 4
             AA+HI  N VFHERTKH++ DCHI
Sbjct: 1401 TAAIHIANNAVFHERTKHIENDCHI 1425


>gb|KYP67096.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 850

 Score =  720 bits (1858), Expect = 0.0
 Identities = 370/847 (43%), Positives = 520/847 (61%), Gaps = 29/847 (3%)
 Frame = -2

Query: 2586 WHTRLGHASYGILEHLPFLKPHCNKGVEQSVKQCDICHISKQHRVPFSSSESHATALFDL 2407
            WH RLGH S+  L ++  + P      ++    C++CH++KQ R+PF+ S +    +FDL
Sbjct: 21   WHLRLGHPSHEKLGNIQTMYPFVKFNKDKV--PCEVCHLAKQKRLPFAYSSNTCDNVFDL 78

Query: 2406 IHVDVWGPFHSGTLFYHTPYFLTIVDDYSRTTWTYLMTHKSQVYSLLHKYIQMVQTQFHK 2227
            IH+D+WGP    ++F H  YFLTIV++ +R TW Y M  KS+  SL+  ++   QTQF+K
Sbjct: 79   IHIDIWGPLSIPSIFGHK-YFLTIVENNARHTWIYFMKQKSETASLIQAFVAQTQTQFNK 137

Query: 2226 VIKIIRTDNGTEFLNQNCKNLFEQHGILHHKSCTYTPQQNGVVERKHRHLLDTARALLFQ 2047
             IKIIRTDNG EF   N    F+  GILH  SC  TPQQNG+VERKH+H+L  ARAL+FQ
Sbjct: 138  KIKIIRTDNGREF---NMHEWFKDKGILHQTSCVETPQQNGIVERKHQHILGIARALIFQ 194

Query: 2046 SKLPIDFWPFSLLTATYIINRIPLSTLHWKSPYEVLFNKLPNYNLLKPFGCAAYATNLLP 1867
            S +P  FW  ++  A ++INR+P   L  KSPY++L +KLP+ + LK FGC  +A+ +  
Sbjct: 195  SGIPKSFWNHAVNHAVFLINRLPTRFLKGKSPYQILHDKLPDISYLKTFGCLCFASTIHS 254

Query: 1866 HKHKFDARAHKCIFVGYELGKKGYKLFDPATNKFLVTREAFFIETEFPSLPQRN------ 1705
            ++ K D RA KCIF+GY+ G KG  L+D  T +  ++R+  F E  FP L + N      
Sbjct: 255  NRTKLDERARKCIFLGYKDGTKGCVLYDLKTREIFISRDVLFYEQNFPMLEKHNQQSKDN 314

Query: 1704 ---------------------DSTHLPHVSEPEHTXXXXXXXXXXXXXSHTDLHIALRKG 1588
                                 D+ ++ H +EP  T                + + A+R  
Sbjct: 315  EHQTQVPSIQQSFFANDLFHLDNENVFHTNEPALTHIDGLNNNNQVQQVDNNHYTAVRHS 374

Query: 1587 PRRIHPPAKFADYVVYNAAAHLSPTPTEVITSGSFTSQYSV--PTFPFFVSPHFSQPYVS 1414
             R   PP+   DY       H +     + T+GS ++  +V  P        + S  +  
Sbjct: 375  QRERRPPSYLKDY-------HCT-----LATTGSSSNHPTVRYPISSCLSYNNLSSSHKQ 422

Query: 1413 FLANVSSIREPTTYAQASDDPHWVEAMNKELDALESNHTWELTPLPQGKKAIGCKWVYKV 1234
            ++ ++SSI EP T+ +A     W  A+N EL AL+ N TW LT LP GKK I CKWV+KV
Sbjct: 423  YIFSISSISEPKTFEEAVQHSCWRNAINDELQALDKNQTWILTSLPPGKKLIKCKWVFKV 482

Query: 1233 KLNPDGTVDRYKARLVAKGYHQVHGVDYLDSFSPVAKMVTVRMLIAIAATRGWELHQLDI 1054
            K   DG+++R+KARLVAKG+ Q  G+D++++FSPV KM T+R+L++IA+   W LHQLD+
Sbjct: 483  KHYSDGSIERHKARLVAKGFTQTEGIDFMETFSPVVKMTTIRLLLSIASASNWHLHQLDV 542

Query: 1053 NNAFLHGYLDETIYMLPPAGYKKAKLGEVCLLKRSLYGLKQASRQWNTEFCTKLLAFGFI 874
            N AFLHG+L+E +YM PP G +      VC L +S+YGL+QASRQWN      L++  + 
Sbjct: 543  NTAFLHGHLNEEVYMEPPPGLELQDEKLVCKLTKSIYGLRQASRQWNARLTEVLISLDYS 602

Query: 873  QSVHDHCLFTKHSASSSMCLLVYVDDVLVTGSNPDDIRDLKQYLDRLFTIKDLGAAKYFL 694
            +S  D+ LFTK S+     +L YVDD+++ G + D+I ++KQ L + F IKDLG  K+FL
Sbjct: 603  KSKADYSLFTKKSSKGLTVILTYVDDLVLAGEDLDEINNVKQILHKEFGIKDLGQLKFFL 662

Query: 693  GLELARSDAGIYLNQRKYILDILDDVGLMGCKPASTPFPQGLKLVHGTDPPLSNPDQYRR 514
            GLE+ARS  GI LNQRKY LD+L D GL+  KP STP      L   + P   +  +YRR
Sbjct: 663  GLEVARSAKGICLNQRKYALDLLQDTGLLASKPCSTPMDHTNHLHKASGPMFEDVTKYRR 722

Query: 513  LVGRLLYLNLTRPDITFCVQQLSQFINSHCVAHWNVATHLLRYLKGCPSKGLFYAADSPS 334
            L+GRL+YL  TRPDI++ V +LSQ ++   VAH+  A  +L+Y+K  P KGLF+   S  
Sbjct: 723  LLGRLIYLTNTRPDISYAVGKLSQSLDCPTVAHYQAALRVLKYIKNAPGKGLFFPVASDL 782

Query: 333  SLTAYSDADWAACHDTRRSITGFCIFLGTSLISWKAKKQTTVSKSSAEAEYRALSSTVCE 154
             LT Y+D+DW+ C D+RRS +GFC FLG SLISWK+KKQ+ VS+SS+EAEYRA++   CE
Sbjct: 783  KLTGYTDSDWSTCIDSRRSTSGFCFFLGQSLISWKSKKQSVVSRSSSEAEYRAMALATCE 842

Query: 153  LQWVTYV 133
             QW+ Y+
Sbjct: 843  SQWIVYL 849


>emb|CAN76546.1| hypothetical protein VITISV_010420 [Vitis vinifera]
          Length = 1288

 Score =  732 bits (1889), Expect = 0.0
 Identities = 394/885 (44%), Positives = 537/885 (60%), Gaps = 23/885 (2%)
 Frame = -2

Query: 2586 WHTRLGHASYGILEHLPFLKPHCNKGVEQSVKQCDICHISKQHRVPFSSSESHATALFDL 2407
            WH+RLGH S+  L+ L  +    +      +  C++C ++KQ  +P+ S     ++ FDL
Sbjct: 416  WHSRLGHPSFSRLKGLQSVLDFDSSF---DLTPCNVCPLAKQRCLPYISLNKRCSSTFDL 472

Query: 2406 IHVDVWGPFHSGTLFYHTPYFLTIVDDYSRTTWTYLMTHKSQVYSLLHKYIQMVQTQFHK 2227
            +H+D+WGPF  G++  +  +FLTIVDDYSR TW Y++ +KS+V   +  +   V+ QF K
Sbjct: 473  LHLDIWGPFSVGSVEGYK-FFLTIVDDYSRVTWVYMLKNKSEVQKYIPDFFAFVKKQFGK 531

Query: 2226 VIKIIRTDNGTEFLNQNCKNLFEQHGILHHKSCTYTPQQNGVVERKHRHLLDTARALLFQ 2047
             +K IR+DN  E       N +   G++H++SC  TPQQN VVERKH+H+L+ ARALLF 
Sbjct: 532  EVKAIRSDNAPELF---LSNFYHSLGVIHYRSCVETPQQNSVVERKHQHILNVARALLFX 588

Query: 2046 SKLPIDFWPFSLLTATYIINRIPLSTLHWKSPYEVLFNKLPNYNLLKPFGCAAYATNLLP 1867
            S LP+ +W   +LTA Y+INR P   L+ K+P+E+L +KLP+Y+ L+ FGC  Y + L  
Sbjct: 589  SSLPVCYWSDCILTAVYLINRTPSPFLNNKTPFEILHDKLPDYSHLRVFGCLCYVSTLKA 648

Query: 1866 HKHKFDARAHKCIFVGYELGKKGYKLFDPATNKFLVTREA-----------FFIETEFPS 1720
            ++ KF  RA   +F+GY  G KGYKL D  T    ++R              F +   P 
Sbjct: 649  NRTKFSPRAKAAVFLGYPFGFKGYKLLDIETRSISISRNTNPCSSPDISSDLFHDRVLPC 708

Query: 1719 LPQRND--STHLPHV-SEPEHTXXXXXXXXXXXXXSHTDLHIALRKGPRRIHP-PAKFAD 1552
            +   ND  S+ LP V S+P                    L +A    P R+   P+   D
Sbjct: 709  IAADNDQSSSVLPRVVSQPP-------------------LQVAPSSRPTRVSKQPSYLKD 749

Query: 1551 Y--VVYNAAAHLSPTPTEVITSGSFTSQYSVPTFPFFVSPHFSQPYVSFLANVSSIREPT 1378
            Y   + N+ AH+             T   S P   F      S  Y  F  +VS I EP+
Sbjct: 750  YHCSLINSVAHVE------------THSTSHPIQHFLSYDKLSPSYKLFSLSVSIISEPS 797

Query: 1377 TYAQASDDPHWVEAMNKELDALESNHTWELTPLPQGKKAIGCKWVYKVKLNPDGTVDRYK 1198
            ++A+A++ P W  AM+ EL+ALE N T  +  LP GK  +GCKWVYK K   DGT++RYK
Sbjct: 798  SFAKAAEIPEWRAAMDCELEALEENKTXSIVSLPVGKHPVGCKWVYKXKHKXDGTIERYK 857

Query: 1197 ARLVAKGYHQVHGVDYLDSFSPVAKMVTVRMLIAIAATRGWELHQLDINNAFLHGYLDET 1018
            ARLVAKGY Q  G+DY+D+FSPVAK+VTV++L+AIAA +GW L QLD+NNAFLHG L+E 
Sbjct: 858  ARLVAKGYTQREGIDYVDTFSPVAKLVTVKLLLAIAAVKGWHLSQLDVNNAFLHGDLNEE 917

Query: 1017 IYMLPPAGYKKAKLGE------VCLLKRSLYGLKQASRQWNTEFCTKLLAFGFIQSVHDH 856
            +YM  P GY +   GE      VCLL +SLYGLKQASRQW ++F T ++  GF QS  DH
Sbjct: 918  VYMKLPPGYNRK--GESLPSNXVCLLHKSLYGLKQASRQWFSKFSTAIMGLGFSQSPSDH 975

Query: 855  CLFTKHSASSSMCLLVYVDDVLVTGSNPDDIRDLKQYLDRLFTIKDLGAAKYFLGLELAR 676
             LF K+     + +LVYVDDV++  +N   I DLK  L++LF +KDLG  KYFLGLE+A+
Sbjct: 976  SLFIKNVDGLFIAJLVYVDDVIIASNNQGAIADLKSELNKLFKLKDLGDVKYFLGLEIAK 1035

Query: 675  SDAGIYLNQRKYILDILDDVGLMGCKPASTPFPQGLKLVHGTDPPLSNPDQYRRLVGRLL 496
            S  GI ++QRKY+LD+L D G +GCK ASTP    +KL       L +   YRRL     
Sbjct: 1036 SSTGICVSQRKYVLDLLSDFGYLGCKAASTPMEANVKLSMDEGVDLPDVSLYRRL----- 1090

Query: 495  YLNLTRPDITFCVQQLSQFINSHCVAHWNVATHLLRYLKGCPSKGLFYAADSPSSLTAYS 316
                            SQFI+   + H + A  +LRYLKG P  GLF+ ++S   L AY+
Sbjct: 1091 ----------------SQFISRPKLPHLHAAQRILRYLKGNPGMGLFFPSNSELRLMAYT 1134

Query: 315  DADWAACHDTRRSITGFCIFLGTSLISWKAKKQTTVSKSSAEAEYRALSSTVCELQWVTY 136
            D+DWA C D+RRS+TGFC+FLG SL+SWK+KKQ  VS+SSAEAEYRA+++T CE+ W+  
Sbjct: 1135 DSDWARCPDSRRSVTGFCVFLGNSLVSWKSKKQHIVSRSSAEAEYRAMANTSCEITWLLA 1194

Query: 135  VAQDFHLRFPTLIPLLCDNQAALHIVANPVFHERTKHLDIDCHIV 1
            + +DF +       L CDNQ+ALH+  NPVFHERTKH++IDCH+V
Sbjct: 1195 LLKDFGIDHSAPALLFCDNQSALHMAENPVFHERTKHIEIDCHLV 1239


>gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hopscotch polyprotein
            (gb|U12626) [Arabidopsis thaliana]
          Length = 1315

 Score =  728 bits (1879), Expect = 0.0
 Identities = 396/935 (42%), Positives = 538/935 (57%), Gaps = 25/935 (2%)
 Frame = -2

Query: 2730 QDLKTDHVLGIGKVVGSLYILDTQQTGGXXXXXXXXXXXXXXXXXVTTWHTRLGHASYGI 2551
            QD   + ++G+GK V +LYI+D                          WH RLGH S   
Sbjct: 362  QDATRELMVGMGKQVANLYIVDLDSLS---HPGTDSSITVASVTSHDLWHKRLGHPSVQK 418

Query: 2550 LEHLPFLKPHCNKGVEQSVKQCDICHISKQHRVPFSSSESHATALFDLIHVDVWGPFHSG 2371
            L+ +  L     K    +   C +CHISKQ  +PF S  + ++  FDLIH+D WGPF   
Sbjct: 419  LQPMSSLLSF-PKQKNNTDFHCRVCHISKQKHLPFVSHNNKSSRPFDLIHIDTWGPFSVQ 477

Query: 2370 TLFYHTPYFLTIVDDYSRTTWTYLMTHKSQVYSLLHKYIQMVQTQFHKVIKIIRTDNGTE 2191
            T   +  YFLTIVDDYSR TW YL+ +KS V +++  ++ MV+ QF   IK +R+DN  E
Sbjct: 478  THDGYR-YFLTIVDDYSRATWVYLLRNKSDVLTVIPTFVTMVENQFETTIKGVRSDNAPE 536

Query: 2190 FLNQNCKNLFEQHGILHHKSCTYTPQQNGVVERKHRHLLDTARALLFQSKLPIDFWPFSL 2011
                N    +   GI+ + SC  TPQQN VVERKH+H+L+ AR+L FQS +PI +W   +
Sbjct: 537  L---NFTQFYHSKGIVPYHSCPETPQQNSVVERKHQHILNVARSLFFQSHIPISYWGDCI 593

Query: 2010 LTATYIINRIPLSTLHWKSPYEVLFNKLPNYNLLKPFGCAAYATNLLPHKHKFDARAHKC 1831
            LTA Y+INR+P   L  K P+EVL   +P Y+ +K FGC  YA+     +HKF  RA  C
Sbjct: 594  LTAVYLINRLPAPILEDKCPFEVLTKTVPTYDHIKVFGCLCYASTSPKDRHKFSPRAKAC 653

Query: 1830 IFVGYELGKKGYKLFDPATNKFLVTREAFFIETEFPSLP--------------------Q 1711
             F+GY  G KGYKL D  T+  +V+R   F E  FP L                     Q
Sbjct: 654  AFIGYPSGFKGYKLLDLETHSIIVSRHVVFHEELFPFLGSDLSQEEQNFFPDLNPTPPMQ 713

Query: 1710 RNDSTHLPHVSEPEHTXXXXXXXXXXXXXSHTDLHIALRKGPRRIHPPAKFADYVVYNAA 1531
            R  S H+ + S+   +                 +  + RK  +    PA   DY  ++  
Sbjct: 714  RQSSDHV-NPSDSSSSVEILPSANPTNNVPEPSVQTSHRKAKK----PAYLQDYYCHSV- 767

Query: 1530 AHLSPTPTEVITSGSFTSQYSVPTFPFFVSPHFSQPYVSFLANVSSIREPTTYAQASDDP 1351
              +S TP E+                F      + PY++FLA +   +EP+ Y +A    
Sbjct: 768  --VSSTPHEIRK--------------FLSYDRINDPYLTFLACLDKTKEPSNYTEAEKLQ 811

Query: 1350 HWVEAMNKELDALESNHTWELTPLPQGKKAIGCKWVYKVKLNPDGTVDRYKARLVAKGYH 1171
             W +AM  E D LE  HTWE+  LP  K+ IGC+W++K+K N DG+V+RYKARLVA+GY 
Sbjct: 812  VWRDAMGAEFDFLEGTHTWEVCSLPADKRCIGCRWIFKIKYNSDGSVERYKARLVAQGYT 871

Query: 1170 QVHGVDYLDSFSPVAKMVTVRMLIAIAATRGWELHQLDINNAFLHGYLDETIYMLPPAGY 991
            Q  G+DY ++FSPVAK+ +V++L+ +AA     L QLDI+NAFL+G LDE IYM  P GY
Sbjct: 872  QKEGIDYNETFSPVAKLNSVKLLLGVAARFKLSLTQLDISNAFLNGDLDEEIYMRLPQGY 931

Query: 990  KKAK-----LGEVCLLKRSLYGLKQASRQWNTEFCTKLLAFGFIQSVHDHCLFTKHSASS 826
               +        VC LK+SLYGLKQASRQW  +F + LL  GFIQS  DH  F K S   
Sbjct: 932  ASRQGDSLPPNAVCRLKKSLYGLKQASRQWYLKFSSTLLGLGFIQSYCDHTCFLKISDGI 991

Query: 825  SMCLLVYVDDVLVTGSNPDDIRDLKQYLDRLFTIKDLGAAKYFLGLELARSDAGIYLNQR 646
             +C+LVY+DD+++  +N   +  LK  +   F ++DLG  KYFLGLE+ RSD GI+++QR
Sbjct: 992  FLCVLVYIDDIIIASNNDAAVDILKSQMKSFFKLRDLGELKYFLGLEIVRSDKGIHISQR 1051

Query: 645  KYILDILDDVGLMGCKPASTPFPQGLKLVHGTDPPLSNPDQYRRLVGRLLYLNLTRPDIT 466
            KY LD+LD+ G +GCKP+S P    +   H +         YRRL+GRL+YLN+TRPDIT
Sbjct: 1052 KYALDLLDETGQLGCKPSSIPMDPSMVFAHDSGGDFVEVGPYRRLIGRLMYLNITRPDIT 1111

Query: 465  FCVQQLSQFINSHCVAHWNVATHLLRYLKGCPSKGLFYAADSPSSLTAYSDADWAACHDT 286
            F V +L+QF  +   AH      +L+Y+KG   +GLFY+A S   L  Y++AD+ +C D+
Sbjct: 1112 FAVNKLAQFSMAPRKAHLQAVYKILQYIKGTIGQGLFYSATSELQLKVYANADYNSCRDS 1171

Query: 285  RRSITGFCIFLGTSLISWKAKKQTTVSKSSAEAEYRALSSTVCELQWVTYVAQDFHLRFP 106
            RRS +G+C+FLG SLI WK++KQ  VSKSSAEAEYR+LS    EL W+T   ++  +   
Sbjct: 1172 RRSTSGYCMFLGDSLICWKSRKQDVVSKSSAEAEYRSLSVATDELVWLTNFLKELQVPLS 1231

Query: 105  TLIPLLCDNQAALHIVANPVFHERTKHLDIDCHIV 1
                L CDN+AA+HI  N VFHERTKH++ DCH V
Sbjct: 1232 KPTLLFCDNEAAIHIANNHVFHERTKHIESDCHSV 1266


>gb|KYP34729.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1180

 Score =  717 bits (1850), Expect = 0.0
 Identities = 378/889 (42%), Positives = 536/889 (60%), Gaps = 28/889 (3%)
 Frame = -2

Query: 2583 HTRLGHASYGILEHLPFLKPHCNKGVEQSVKQCDICHISKQHRVPFSSS-ESHATALFDL 2407
            H RLGH S   L  L  + PH ++       +C+ C + K  R  F +S  S A  LFD+
Sbjct: 267  HRRLGHPS---LNKLKKMVPHLSR---LESLECESCQLGKHVRASFPNSVNSRAMCLFDV 320

Query: 2406 IHVDVWGPFHSGTLFYHTPYFLTIVDDYSRTTWTYLMTHKSQVYSLLHKYIQMVQTQFHK 2227
            IH DVWGP    +L  H  Y++T +DD+SR TW +LM ++S+++++   +   ++TQF K
Sbjct: 321  IHSDVWGPSRVPSLLGHR-YYVTFIDDFSRCTWIFLMKNRSELFNIFLSFYSEIKTQFGK 379

Query: 2226 VIKIIRTDNGTEFLNQNCKNLFEQHGILHHKSCTYTPQQNGVVERKHRHLLDTARALLFQ 2047
            VI+I+R+DN  E+ +   K+    HGILH  SC +TPQQNGV ERKHRH++DTAR LL  
Sbjct: 380  VIRILRSDNAKEYFSDCFKSFMASHGILHQSSCPHTPQQNGVAERKHRHIVDTARTLLLN 439

Query: 2046 SKLPIDFWPFSLLTATYIINRIPLSTLHWKSPYEVLFNKLPNYNLL-KPFGCAAYATNLL 1870
            +  P   W  ++LTA Y+INR+P S L+ + P+ +L+   P Y++  + FGC  +  +L 
Sbjct: 440  ANAPPKLWGDAVLTAGYLINRMPSSVLNDQVPHSLLYPLDPLYSVHPRVFGCTCFVHDLF 499

Query: 1869 PHKHKFDARAHKCIFVGYELGKKGYKLFDPATNKFLVTREAFFIE------------TEF 1726
                K  ARA KC+F+GY   +KGY+ + PAT++F  + +  F E             + 
Sbjct: 500  SGSAKLSARAIKCVFLGYSRVQKGYRCYSPATHRFYTSADVTFFEDTPYFIATDVSPVDS 559

Query: 1725 PSLPQRNDSTHLPHVSEPEHTXXXXXXXXXXXXXSHTDLH---IALRKGPRRIHPPAKFA 1555
              L Q     H  H   P                S   LH   I   +    + PP   +
Sbjct: 560  DLLSQVLPIPHFDHSVPPTTPATLEAPDPPALPGSDHPLHRFGITYERRSHTVVPPNDSS 619

Query: 1554 DYVVYNAAAHLS-PTPTE--------VITSGSFTSQYSVPTFPFFVSPHFSQPYVSFLAN 1402
                 +  A +S PTP           +  GS ++    P + F      S  Y +F++ 
Sbjct: 620  IEPCDSTPASVSSPTPAPPTSVDLPIALRKGSRSTCNPHPIYNFLSYHRLSPTYYAFVSA 679

Query: 1401 VSSIREPTTYAQASDDPHWVEAMNKELDALESNHTWELTPLPQGKKAIGCKWVYKVKLNP 1222
            +SSI  P T  +A   P W +AM  E+ AL+SNHTW L P P GK  +GC+WV+ VK+ P
Sbjct: 680  ISSITIPKTVQEALTHPGWRQAMIDEMTALDSNHTWVLVPPPPGKSVVGCRWVFNVKVGP 739

Query: 1221 DGTVDRYKARLVAKGYHQVHGVDYLDSFSPVAKMVTVRMLIAIAATRGWELHQLDINNAF 1042
            DG VDR KARLVAKGY QV+G+DY D+FSPVAKM +VR+ +A+AA R W L QLDI NAF
Sbjct: 740  DGQVDRLKARLVAKGYTQVYGLDYSDTFSPVAKMASVRLFLAMAAMRHWPLFQLDIKNAF 799

Query: 1041 LHGYLDETIYMLPPAGY-KKAKLGEVCLLKRSLYGLKQASRQWNTEFCTKLLAFGFIQSV 865
            LHG L+E IYM  P G+  +   G VC L++SLYGLKQ+ R W   F   +  FG I+  
Sbjct: 800  LHGDLEEEIYMDQPPGFVAQGGSGLVCKLQKSLYGLKQSPRAWFGRFSKVIQEFGMIRCE 859

Query: 864  HDHCLFTKHSASSSMC-LLVYVDDVLVTGSNPDDIRDLKQYLDRLFTIKDLGAAKYFLGL 688
             DH +F + S++     L+VYVDD+++TG + + I+ LKQ+L + F  KDLG  +YFLG+
Sbjct: 860  TDHSVFFRRSSTHRFIYLVVYVDDIVITGDDQEGIKALKQHLFKHFQTKDLGPLRYFLGI 919

Query: 687  ELARSDAGIYLNQRKYILDILDDVGLMGCKPASTPFPQGLKLVHGTDPPLSNPDQYRRLV 508
            E+A+S +GI ++QRKY LDIL++ GL  CKP  TP    +KL+     P  +P +YRRLV
Sbjct: 920  EVAQSKSGIAISQRKYALDILEETGLTDCKPVDTPMDPNVKLMPNQGEPYPDPGRYRRLV 979

Query: 507  GRLLYLNLTRPDITFCVQQLSQFINSHCVAHWNVATHLLRYLKGCPSKGLFYAADSPSSL 328
            G+L YL +TRPDI+F V  +SQF+NS C +HW     +LRY+K  P KGL Y     +++
Sbjct: 980  GKLNYLTMTRPDISFPVSVVSQFLNSPCESHWLAVVRILRYIKRSPGKGLVYNDRGHTNI 1039

Query: 327  TAYSDADWAACHDTRRSITGFCIFLGTSLISWKAKKQTTVSKSSAEAEYRALSSTVCELQ 148
              YSDADWA     RRS +G+C+F+G +L+SWK+KKQ+ +++SS EAEYRA++ T CEL 
Sbjct: 1040 VGYSDADWAGDASDRRSTSGYCVFMGGNLVSWKSKKQSVIARSSTEAEYRAMAHTTCELL 1099

Query: 147  WVTYVAQDFHLRFPTLIPLLCDNQAALHIVANPVFHERTKHLDIDCHIV 1
            W+ ++ Q+F       + L+CDNQ+AL++ +NPVFHERTKH+++DCH +
Sbjct: 1100 WLKFLIQEFQFCKVGHMELVCDNQSALYLSSNPVFHERTKHIEVDCHFI 1148


>emb|CAN62535.1| hypothetical protein VITISV_041880 [Vitis vinifera]
          Length = 1314

 Score =  721 bits (1860), Expect = 0.0
 Identities = 388/929 (41%), Positives = 557/929 (59%), Gaps = 19/929 (2%)
 Frame = -2

Query: 2730 QDLKTDHVLGIGKVVGSLYILDTQQTGGXXXXXXXXXXXXXXXXXVTTWHTRLGHASYGI 2551
            QD  T   +GIG+    LY L +  +                       H RLGH S   
Sbjct: 402  QDRSTGKTIGIGRESQGLYHLTSDSSPAVCISTDAPLLI----------HNRLGHPS--- 448

Query: 2550 LEHLPFLKPHCNKGVEQSVKQCDICHISKQHRVPFSSS-ESHATALFDLIHVDVWGPFHS 2374
            L     + P  +     S   C+ C + K  RV F     + A + F+L+H DVWGP  +
Sbjct: 449  LSKFQKMVPRFST---LSSLPCESCQLGKHTRVSFPKRLNNRAKSPFELVHTDVWGPCRT 505

Query: 2373 G-TLFYHTPYFLTIVDDYSRTTWTYLMTHKSQVYSLLHKYIQMVQTQFHKVIKIIRTDNG 2197
              TL +   YF+T +DDYSR TW +LM ++++++S+  K+   +QTQF+  I+++R+DN 
Sbjct: 506  ASTLGFQ--YFVTFIDDYSRCTWLFLMKNQAELFSIFQKFYTEIQTQFNISIRVLRSDNA 563

Query: 2196 TEFLNQNCKNLFEQHGILHHKSCTYTPQQNGVVERKHRHLLDTARALLFQSKLPIDFWPF 2017
             E+ +    +    HGILH  SC +TPQQNGV ERK+RHL++TAR LL  + +P  FW  
Sbjct: 564  REYFSAQFTSFMSHHGILHQSSCAHTPQQNGVAERKNRHLVETARTLLLHNHVPFRFWGD 623

Query: 2016 SLLTATYIINRIPLSTLHWKSPYEVLFNKLPNYNLL-KPFGCAAYATNLLPHKHKFDARA 1840
            ++LTA Y+INR+P S LH + P+ +LF   P Y L  + FGC  +   L P + K  A+A
Sbjct: 624  AVLTACYLINRMPSSVLHDQIPHSLLFPDQPLYFLPPRVFGCTCFVHILTPGQDKLSAKA 683

Query: 1839 HKCIFVGYELGKKGYKLFDPATNKFLVTREAFFIE------TEFPSLPQRNDSTHLPHVS 1678
             KC+F+GY   +KGY+ +   T+++ ++ +  F E      T   SLP  ++   +P VS
Sbjct: 684  MKCLFLGYSRLQKGYRCYSLETHRYFISADVTFFEDSPFFSTTSESLPV-SEVLPIPIVS 742

Query: 1677 EPEHTXXXXXXXXXXXXXSHTDLHIALRKGPRRIHP---PAKFADYVVYNAA--AHLSPT 1513
             P+                   L +  R+ PR + P   P   AD +   +A  A   P+
Sbjct: 743  PPDAMPPRP-------------LQVYHRR-PRVVAPLPFPEAPADSLPIPSASPAPALPS 788

Query: 1512 PTEV---ITSGSFTSQYSVPTFPFFVSPHFSQPYVSFLANVSSIREPTTYAQASDDPHWV 1342
            P ++   +  G  +++   P + F      S PY +F++ +SS+  P +  +A   P W 
Sbjct: 789  PNDLPIAVXKGXRSTRNPHPIYNFLSYHRLSSPYSAFVSAISSVSLPKSTHEALSHPSWR 848

Query: 1341 EAMNKELDALESNHTWELTPLPQGKKAIGCKWVYKVKLNPDGTVDRYKARLVAKGYHQVH 1162
            + M  E+ AL SN TW+L  LP GK  +GC+WVY VK+ PDG VDR KARLVAKGY QV+
Sbjct: 849  QXMVDEMAALHSNGTWDLVVLPSGKSTVGCRWVYAVKVGPDGQVDRLKARLVAKGYTQVY 908

Query: 1161 GVDYLDSFSPVAKMVTVRMLIAIAATRGWELHQLDINNAFLHGYLDETIYMLPPAGY-KK 985
            G DY D+FSPVAK+ +VR+L+++AA   W L+QLDI NAFLHG L E +YM  P G+  +
Sbjct: 909  GSDYGDTFSPVAKIASVRLLLSMAAMCSWPLYQLDIKNAFLHGDLAEEVYMEQPPGFVAQ 968

Query: 984  AKLGEVCLLKRSLYGLKQASRQWNTEFCTKLLAFGFIQSVHDHCLFTKH-SASSSMCLLV 808
             + G VC L+RSLYGLKQ+ R W + F + +  FG ++S  DH +F  H S    + L+V
Sbjct: 969  GESGLVCRLRRSLYGLKQSPRAWFSHFSSVVQEFGMLRSTADHSVFYHHNSLGQCIYLVV 1028

Query: 807  YVDDVLVTGSNPDDIRDLKQYLDRLFTIKDLGAAKYFLGLELARSDAGIYLNQRKYILDI 628
            YVDD+++TGS+ D I+ LKQ+L   F  KDLG  KYFLG+E+A+S +G+ L+QRKY LDI
Sbjct: 1029 YVDDIVITGSDQDGIQKLKQHLFTHFQTKDLGKLKYFLGIEIAQSSSGVVLSQRKYALDI 1088

Query: 627  LDDVGLMGCKPASTPFPQGLKLVHGTDPPLSNPDQYRRLVGRLLYLNLTRPDITFCVQQL 448
            L++ G++ CKP  TP    +KLV G   PL +P +YRRLVG+L YL +TRPDI+F V  +
Sbjct: 1089 LEETGMLDCKPVDTPMDPNVKLVPGQGEPLGDPGRYRRLVGKLNYLTITRPDISFPVSVV 1148

Query: 447  SQFINSHCVAHWNVATHLLRYLKGCPSKGLFYAADSPSSLTAYSDADWAACHDTRRSITG 268
            SQF+ S C +HW+    +LRY+K  P +G+ Y     + +  Y+DADWA     RRS +G
Sbjct: 1149 SQFLQSPCDSHWDAVIRILRYIKSTPGQGVLYENRGHTQVVGYTDADWAGSPTDRRSTSG 1208

Query: 267  FCIFLGTSLISWKAKKQTTVSKSSAEAEYRALSSTVCELQWVTYVAQDFHLRFPTLIPLL 88
            +C+F+G +LISWK+KKQ  V++SSAEAEYRA++   CEL W+ ++ Q+        + L+
Sbjct: 1209 YCVFIGGNLISWKSKKQDVVARSSAEAEYRAMALATCELIWLRHLLQELRFGKDEQMKLI 1268

Query: 87   CDNQAALHIVANPVFHERTKHLDIDCHIV 1
            CDNQAALHI +NPVFHERTKH+++DCH +
Sbjct: 1269 CDNQAALHIASNPVFHERTKHIEVDCHFI 1297


>gb|AAG10817.1|AC011808_5 Putative retroelement polyprotein [Arabidopsis thaliana]
          Length = 1413

 Score =  720 bits (1859), Expect = 0.0
 Identities = 378/852 (44%), Positives = 521/852 (61%), Gaps = 16/852 (1%)
 Frame = -2

Query: 2514 KGVEQSVKQCDICHISKQHRVPFSSSESHATALFDLIHVDVWGPFHSGTLF-YHTPYFLT 2338
            K   + +  CDIC  +KQ ++ + S  +   A FDL+H+DVWGPF   T   YH  YFLT
Sbjct: 557  KTKNKGLLHCDICQRAKQKKLTYPSRHNICLAPFDLLHIDVWGPFSEPTQEGYH--YFLT 614

Query: 2337 IVDDYSRTTWTYLMTHKSQVYSLLHKYIQMVQTQFHKVIKIIRTDNGTEFLNQNCKNLFE 2158
            IVDD++R TW YLM +KS V ++   +I MV+TQ+   +K +R+DN  E      + L+ 
Sbjct: 615  IVDDHTRVTWVYLMKYKSDVLTIFPDFITMVETQYDTKVKAVRSDNAPEL---KFEELYR 671

Query: 2157 QHGILHHKSCTYTPQQNGVVERKHRHLLDTARALLFQSKLPIDFWPFSLLTATYIINRIP 1978
            + GI+ + SC  TP+QN VVERKH+H+L+ ARALLFQS++P+ +W   +LTA +IINR P
Sbjct: 672  RKGIVAYHSCPETPEQNSVVERKHQHILNVARALLFQSQIPLSYWGDCILTAVFIINRTP 731

Query: 1977 LSTLHWKSPYEVLFNKLPNYNLLKPFGCAAYATNLLPHKHKFDARAHKCIFVGYELGKKG 1798
               +  K+ +E+L  K+P+Y  LK FGC  YA+     +HKF+ RA  C F+GY  G KG
Sbjct: 732  SPVISNKTLFEMLTKKVPDYTHLKSFGCLCYASTSPKQRHKFEDRARTCAFLGYPSGYKG 791

Query: 1797 YKLFDPATNKFLVTREAFFIETEFP--SLPQRND--STHLPHV------SEPEHTXXXXX 1648
            YKL D  ++   ++R   F E  FP  + P  N+  S   PH+      S P        
Sbjct: 792  YKLLDLESHTIFISRNVVFYEDLFPFKTKPAENEESSVFFPHIYVDRNDSHPSQPLPVQE 851

Query: 1647 XXXXXXXXSHTDLHIALRKGPRRIHPPAKFADYVVYNAAAHLSPTPTEVITSGSFTSQYS 1468
                           A ++  R   PPA   DY   +  +      +EV++  S      
Sbjct: 852  TSASNVP--------AEKQNSRVSRPPAYLKDYHCNSVTSSTDHPISEVLSYSSL----- 898

Query: 1467 VPTFPFFVSPHFSQPYVSFLANVSSIREPTTYAQASDDPHWVEAMNKELDALESNHTWEL 1288
                        S PY+ F+  V+ I EP TYAQA     W +AM  E+ ALE N TW +
Sbjct: 899  ------------SDPYMIFINAVNKIPEPHTYAQARQIKEWCDAMGMEITALEDNGTWVV 946

Query: 1287 TPLPQGKKAIGCKWVYKVKLNPDGTVDRYKARLVAKGYHQVHGVDYLDSFSPVAKMVTVR 1108
              LP GKKA+GCKWVYK+KLN DG+++RYKARLVAKGY Q  G+DY+D+FSPVAK+ TV+
Sbjct: 947  CSLPVGKKAVGCKWVYKIKLNADGSLERYKARLVAKGYTQTEGLDYVDTFSPVAKLTTVK 1006

Query: 1107 MLIAIAATRGWELHQLDINNAFLHGYLDETIYMLPPAGYKKAK-----LGEVCLLKRSLY 943
            +LIA+AA +GW L QLDI+NAFL+G LDE IYM  P GY   +        VC LK+SLY
Sbjct: 1007 LLIAVAAAKGWSLSQLDISNAFLNGSLDEEIYMTLPPGYSPRQGDSFPPNAVCRLKKSLY 1066

Query: 942  GLKQASRQWNTEFCTKLLAFGFIQSVHDHCLFTKHSASSSMCLLVYVDDVLVTGSNPDDI 763
            GLKQASRQW  +F   L A GF QS  DH LFT+ S +S M +LVYVDD+++  S   + 
Sbjct: 1067 GLKQASRQWYLKFSESLKALGFTQSSGDHTLFTRKSKNSYMAVLVYVDDIIIASSCDRET 1126

Query: 762  RDLKQYLDRLFTIKDLGAAKYFLGLELARSDAGIYLNQRKYILDILDDVGLMGCKPASTP 583
              L+  L R   ++DLG  +YFLGLE+AR+  GI + QRKY L++L + GL+GCK +S P
Sbjct: 1127 ELLRDALQRSSKLRDLGTLRYFLGLEIARNTDGISICQRKYTLELLAETGLLGCKSSSVP 1186

Query: 582  FPQGLKLVHGTDPPLSNPDQYRRLVGRLLYLNLTRPDITFCVQQLSQFINSHCVAHWNVA 403
                 KL       + + + YR+LVG+L+YL  TRPDIT+ V +L QF ++  V H    
Sbjct: 1187 MEPNQKLSQEDGELIDDAEHYRKLVGKLMYLTFTRPDITYAVHRLCQFTSAPRVPHLKAV 1246

Query: 402  THLLRYLKGCPSKGLFYAADSPSSLTAYSDADWAACHDTRRSITGFCIFLGTSLISWKAK 223
              ++ YLKG   +GLFY+A+    L+ ++D+D+++C D+R+  TG+C+FLGTSL++WK+K
Sbjct: 1247 YKIIYYLKGTVGQGLFYSANVDLKLSGFADSDFSSCSDSRKLTTGYCMFLGTSLVAWKSK 1306

Query: 222  KQTTVSKSSAEAEYRALSSTVCELQWVTYVAQDFHLRFPTLIPLLCDNQAALHIVANPVF 43
            KQ  +S SSAEAEY+A+S  V E+ W+ ++ +D  +       L CDN AA+HI  NPVF
Sbjct: 1307 KQEVISMSSAEAEYKAMSMAVREMMWLRFLLEDLWIDVSEASVLYCDNTAAIHIANNPVF 1366

Query: 42   HERTKHLDIDCH 7
            HERTKH++ D H
Sbjct: 1367 HERTKHIERDYH 1378


>gb|KYP58728.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1402

 Score =  713 bits (1840), Expect = 0.0
 Identities = 377/889 (42%), Positives = 536/889 (60%), Gaps = 28/889 (3%)
 Frame = -2

Query: 2583 HTRLGHASYGILEHLPFLKPHCNKGVEQSVKQCDICHISKQHRVPFSSS-ESHATALFDL 2407
            H RLGH S   L  L  + PH ++       +C+ C + K  R  F +S  S A + FD+
Sbjct: 472  HRRLGHPS---LNKLKKMVPHLSR---LESLECESCQLGKHVRASFPNSINSRAMSPFDV 525

Query: 2406 IHVDVWGPFHSGTLFYHTPYFLTIVDDYSRTTWTYLMTHKSQVYSLLHKYIQMVQTQFHK 2227
            IH DVWGP    +L  H  Y++T +DD+SR TW +LM ++S+++++   +   ++TQF K
Sbjct: 526  IHSDVWGPSRIPSLLGHR-YYVTFIDDFSRCTWIFLMKNRSELFNIFLSFYSEIKTQFGK 584

Query: 2226 VIKIIRTDNGTEFLNQNCKNLFEQHGILHHKSCTYTPQQNGVVERKHRHLLDTARALLFQ 2047
            VI+I+R+DN  E+ +   K+    HGILH  SC +TPQQNGV ERKHRH++DTAR LL  
Sbjct: 585  VIRILRSDNAKEYFSDCFKSFMASHGILHQSSCPHTPQQNGVAERKHRHIVDTARTLLLN 644

Query: 2046 SKLPIDFWPFSLLTATYIINRIPLSTLHWKSPYEVLFNKLPNYNLL-KPFGCAAYATNLL 1870
            +  P   W  ++LTA Y+INR+P S L+ + P+ +L+   P Y++  + FGC  +  +L 
Sbjct: 645  ANAPPKLWGDAVLTAGYLINRMPSSVLNDQVPHSLLYPLDPLYSVHPRVFGCTCFVHDLF 704

Query: 1869 PHKHKFDARAHKCIFVGYELGKKGYKLFDPATNKFLVTREAFFIE------------TEF 1726
              + K  ARA KC+F+GY   +KGY+ + PAT++F  + +  F E             + 
Sbjct: 705  SGRAKLSARAIKCVFLGYSRVQKGYRCYSPATHRFYTSADVTFFEDTPYFIATDVSPVDS 764

Query: 1725 PSLPQRNDSTHLPHVSEPEHTXXXXXXXXXXXXXSHTDLH---IALRKGPRRIHPPAKFA 1555
              L Q     H  H   P                S   LH   I   +    + PP   +
Sbjct: 765  DLLSQVLPIPHFDHSVPPTTPATLEAPDPPALPGSDHPLHRFGITYERRSHTVVPPNDSS 824

Query: 1554 DYVVYNAAAHLS-PTPTE--------VITSGSFTSQYSVPTFPFFVSPHFSQPYVSFLAN 1402
                 +  A +S PTP           +  GS ++    P + F      S  Y +F++ 
Sbjct: 825  IEPCDSTPASVSSPTPAPPTSVDLPIALRKGSRSTCNPHPIYNFLSYHRLSPTYYAFVSA 884

Query: 1401 VSSIREPTTYAQASDDPHWVEAMNKELDALESNHTWELTPLPQGKKAIGCKWVYKVKLNP 1222
            + SI  P T  +A   P W +AM  E+ AL+SNHTW L P P GK  +GC+WV+ VK+ P
Sbjct: 885  IFSITIPKTVQEALTHPGWRQAMIDEMTALDSNHTWVLVPPPPGKSVVGCRWVFNVKVGP 944

Query: 1221 DGTVDRYKARLVAKGYHQVHGVDYLDSFSPVAKMVTVRMLIAIAATRGWELHQLDINNAF 1042
            DG VDR KARLVAKGY QV+G+DY D+FSPVAKM +VR+ +A+AA R W L QLDI NAF
Sbjct: 945  DGQVDRLKARLVAKGYTQVYGLDYSDTFSPVAKMASVRLFLAMAAMRHWPLFQLDIKNAF 1004

Query: 1041 LHGYLDETIYMLPPAGY-KKAKLGEVCLLKRSLYGLKQASRQWNTEFCTKLLAFGFIQSV 865
            LHG L+E IYM  P G+  +   G VC L++SLYGLKQ+ R W   F   +  FG I+  
Sbjct: 1005 LHGDLEEEIYMDQPPGFVAQGGSGLVCKLQKSLYGLKQSPRAWFGRFSKVIQEFGMIRCE 1064

Query: 864  HDHCLFTKHSASSSMC-LLVYVDDVLVTGSNPDDIRDLKQYLDRLFTIKDLGAAKYFLGL 688
             DH +F + S++     L+VYVDD+++TG + + I+ LKQ+L + F  KDLG  +YFLG+
Sbjct: 1065 TDHSVFFRRSSTHRFIYLVVYVDDIVITGDDQEGIKALKQHLFKHFQTKDLGPLRYFLGI 1124

Query: 687  ELARSDAGIYLNQRKYILDILDDVGLMGCKPASTPFPQGLKLVHGTDPPLSNPDQYRRLV 508
            E+A+S +GI ++QRKY LDIL++ GL  CKP  TP    +KL+     P S+P +YRRLV
Sbjct: 1125 EVAQSKSGIAISQRKYALDILEETGLTDCKPVDTPMDPNVKLMPNQGEPYSDPGRYRRLV 1184

Query: 507  GRLLYLNLTRPDITFCVQQLSQFINSHCVAHWNVATHLLRYLKGCPSKGLFYAADSPSSL 328
            G+L YL +TRPDI+F V  +SQF+NS C +HW     +LRY+K  P KGL Y     +++
Sbjct: 1185 GKLNYLTMTRPDISFPVSVVSQFLNSPCESHWLAVVRILRYIKRSPGKGLVYNDRGHTNI 1244

Query: 327  TAYSDADWAACHDTRRSITGFCIFLGTSLISWKAKKQTTVSKSSAEAEYRALSSTVCELQ 148
              YSDADWA     RRS +G+C+F+G +L+SWK+KKQ+ V++SS EAEYRA++ T CEL 
Sbjct: 1245 VGYSDADWAGDASDRRSTSGYCVFMGGNLVSWKSKKQSVVARSSTEAEYRAMAHTTCELL 1304

Query: 147  WVTYVAQDFHLRFPTLIPLLCDNQAALHIVANPVFHERTKHLDIDCHIV 1
            W+ ++ Q+        + L+CDNQ+AL++ +NPVFHERTKH+++DCH +
Sbjct: 1305 WLKFLIQELQFCKVGHMELVCDNQSALYLSSNPVFHERTKHIEVDCHFI 1353