BLASTX nr result
ID: Rehmannia27_contig00013967
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia27_contig00013967
(4592 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera] 634 0.0
gb|KYP48058.1| Retrovirus-related Pol polyprotein from transposo... 572 0.0
gb|KYP50410.1| Retrovirus-related Pol polyprotein from transposo... 570 0.0
gb|KYP34165.1| Copia protein [Cajanus cajan] 566 0.0
gb|KHN21230.1| Retrovirus-related Pol polyprotein from transposo... 592 0.0
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera] 591 0.0
gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposo... 578 0.0
gb|KYP64898.1| Retrovirus-related Pol polyprotein from transposo... 575 e-180
gb|KYP32233.1| Retrovirus-related Pol polyprotein from transposo... 552 e-178
gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposo... 578 e-177
gb|KYP64199.1| Retrovirus-related Pol polyprotein from transposo... 572 e-175
gb|KYP47651.1| Retrovirus-related Pol polyprotein from transposo... 542 e-174
gb|KYP46114.1| Retrovirus-related Pol polyprotein from transposo... 540 e-173
gb|KYP75940.1| Retrovirus-related Pol polyprotein from transposo... 568 e-173
gb|KYP44480.1| Retrovirus-related Pol polyprotein from transposo... 540 e-173
gb|KYP50571.1| Retrovirus-related Pol polyprotein from transposo... 538 e-172
emb|CAN78451.1| hypothetical protein VITISV_005945 [Vitis vinifera] 543 e-171
gb|KHN36156.1| Retrovirus-related Pol polyprotein from transposo... 560 e-170
gb|KHN22040.1| Retrovirus-related Pol polyprotein from transposo... 560 e-170
emb|CAN76473.1| hypothetical protein VITISV_016007 [Vitis vinifera] 543 e-169
>emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]
Length = 1262
Score = 634 bits (1635), Expect = 0.0
Identities = 307/535 (57%), Positives = 402/535 (75%), Gaps = 1/535 (0%)
Frame = +3
Query: 672 HHMVTRSKTGNLKPKSYAAVLQTPVEPTSHLQALKFPEWRKAMEQEYYALVKNGTWSLVP 851
HHMVTRSK G KP Y L EP + +A+ P+W++AM++E+ AL+KN TWSLV
Sbjct: 722 HHMVTRSKNGIFKPXVYTVDLNVE-EPNTFQEAISHPKWKEAMDEEFRALMKNKTWSLVS 780
Query: 852 LPPDKGLINCKWIFKLKKNSDGSIARYKARLVARGFTQIAGLDYTETYSPVVKPATVRLV 1031
LP ++ + C+W+FKLK+N DGS++RYKARLVA+G++Q+ G D+ ET+SPVVKP T+R+V
Sbjct: 781 LPTNRTSVGCRWVFKLKRNPDGSVSRYKARLVAKGYSQVPGFDFYETFSPVVKPTTIRVV 840
Query: 1032 LSLDISHSWPIRQLDIDNAFLNGELDIDLYMEQVPGFEQLDSKGNPLVCKLKKSLYGLKQ 1211
L++ +S SW IRQLD++NAFLNGEL ++YM+Q PGF+ ++ LVCKL K+LYGLKQ
Sbjct: 841 LAIAVSQSWCIRQLDVNNAFLNGELQEEVYMDQPPGFDGKTNQEQKLVCKLHKALYGLKQ 900
Query: 1212 ASRAWCSKLAIVLQSFGFTISQADNSLYFKKEKGNCILILTYVDDIIITGSCQKEVERII 1391
A RAW KL I LQ FGF+ +++D SL+ + + + +L YVDDI++TGS +E+ +I
Sbjct: 901 APRAWFDKLKISLQQFGFSSTKSDQSLFVRFTNCSSLFVLVYVDDIVVTGSSSQEIHELI 960
Query: 1392 TSLHQVFSLKDLGHLHYFLGIEVTPTAQGVL-LSQHKYISDILEQAGMKGAKGLNTPMVT 1568
+ L +FSLKDLG L YFLGIEV TA G L LSQ KYI D+L++ M GAK L TPM++
Sbjct: 961 SRLRGLFSLKDLGELSYFLGIEVKKTADGGLHLSQKKYIQDLLKKTKMDGAKSLPTPMLS 1020
Query: 1569 HPVLSKDDGQPISNGTLYRKLVGALQYATISRPDISYSINKISQFMQNPLDTHWKALKRV 1748
LS G PI N YR +VGALQY TI+RP+I++S+NK+ QFMQ PLDTHWKA+KR+
Sbjct: 1021 GLKLSAGMGDPIDNVFEYRSVVGALQYITITRPEIAFSVNKVCQFMQKPLDTHWKAVKRI 1080
Query: 1749 LRYLAGTIDYGLHFKSDSPLVLTAFADADWGSDIDDRRSTSGYCIYLGKNLITWSSKKQN 1928
LRYL GT D G+ K + L F DADWGSD+DDRRSTSG+C++LGK+L++WSSKKQ+
Sbjct: 1081 LRYLNGTTDLGIVLKPSETMNLVGFCDADWGSDVDDRRSTSGHCVFLGKSLVSWSSKKQH 1140
Query: 1929 IVSRSSTEAEYRSIAAATCELIWLQSLLNELGIQMNRPSIIWTDNLGERSLSANPVYHSR 2108
SRSSTEAEYRS+A+ T E++WLQSLL+EL +M +IW DN+ SLSANPV HSR
Sbjct: 1141 TTSRSSTEAEYRSLASLTSEMLWLQSLLSELQTKMTMVPVIWCDNISTVSLSANPVLHSR 1200
Query: 2109 TKHLELDLHFIREKVMNKAISVQHVPAIDQIADILTKPLSGQFFARLRNKLNVAS 2273
TKH+ELDL+F+REKVM + + V HVP DQ+AD+ TKPLS +FF +LR KL VAS
Sbjct: 1201 TKHMELDLYFVREKVMERKLVVNHVPTEDQVADVFTKPLSFRFFDKLREKLTVAS 1255
Score = 154 bits (390), Expect = 3e-34
Identities = 70/108 (64%), Positives = 85/108 (78%)
Frame = +3
Query: 6 AHMPTKFWDDAFSTAVFIINRLPAKVLNFQTPLEKLTGHKPRYSLLKTFGCLCFPHLRPY 185
A +P K+W DAFSTAVF+INRLP +VL + P E L KP YS LK FGCLCFPHLRPY
Sbjct: 495 ASLPLKYWPDAFSTAVFLINRLPTEVLKQKCPYEFLFNSKPNYSQLKVFGCLCFPHLRPY 554
Query: 186 NKHKLEYRSQPGTFIGYSLQYKGYKVLLDNGKVLITRNVVFDETKFPF 329
NKHKL++RS P TF+GYS ++KGYK L G++ I+R+VVFDET+FPF
Sbjct: 555 NKHKLDFRSSPCTFLGYSSKHKGYKCLNQQGRMFISRSVVFDETRFPF 602
Score = 141 bits (355), Expect = 4e-30
Identities = 60/117 (51%), Positives = 85/117 (72%)
Frame = +1
Query: 4240 APIRSVNGYSYYISFVDHCSRFTWLYLMKAKSDTSQVFIHFKTLVENQFDKKIKSIQSGG 4419
API S G++YY+SF D SR+TW+Y +K KS T + F+ FK E QF K+K+ Q+
Sbjct: 386 APINSSYGFTYYVSFXDAYSRYTWVYXLKTKSQTREAFLMFKAQAELQFGCKLKTFQTDW 445
Query: 4420 GTEFKPLSKFFNDNGIVHRISCPYTPQQNGLVERKHRHIVETGLSMISNAHMPTKFW 4590
G EF+ L +F NGI+HR+SCP+T +QNG++ERKHRHIVE GL++++ A +P K+W
Sbjct: 446 GGEFRSLKTYFEQNGIIHRLSCPHTSKQNGIIERKHRHIVELGLTLLAQASLPLKYW 502
Score = 106 bits (264), Expect = 2e-19
Identities = 56/140 (40%), Positives = 77/140 (55%), Gaps = 24/140 (17%)
Frame = +3
Query: 3519 KMTCQICHRTNHTADKCFYRADLSY---MPGN------------NNSSNAYSPGGTVNVA 3653
K CQ+C++ HT +CFYR D ++ MP N N +S + S G VN+
Sbjct: 180 KPQCQLCNKFGHTVHRCFYRYDPNFHGNMPANGPTPGVLGSGARNGASGSISSAGNVNLT 239
Query: 3654 QYHS---------ESVTKPAGNMDESCWFPDSGATHHVTYDFGNLNLASDYTGADKVQVG 3806
+Y + E++ ++ CWFPDSGAT+HVT+D GNLN ++Y G K+ +G
Sbjct: 240 EYDAQENQDYSEMEAMVATPEDLQNCCWFPDSGATNHVTHDLGNLNSGAEYNGNSKIHMG 299
Query: 3807 NGTGLDILHIGSGNQGSSSS 3866
NGTGL I HIG SSSS
Sbjct: 300 NGTGLKISHIGLSVFPSSSS 319
>gb|KYP48058.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 539
Score = 572 bits (1473), Expect = 0.0
Identities = 291/534 (54%), Positives = 386/534 (72%), Gaps = 4/534 (0%)
Frame = +3
Query: 678 MVTRSKTGNLKPKSYAAVLQTPVEPTSHLQALKFPEWRKAMEQEYYALVKNGTWSLVPLP 857
M TRSK+G KPK Y +VL EP + QALK P+W +AM+QEY AL+KN TW+LV LP
Sbjct: 1 MQTRSKSGIHKPK-YPSVLLAQSEPKNVKQALKDPKWLEAMKQEYSALLKNNTWTLVQLP 59
Query: 858 PDKGLINCKWIFKLKKNSDGSIARYKARLVARGFTQIAGLDYTETYSPVVKPATVRLVLS 1037
PD+ I CKW+F++K+NSDGS+ RYKARLVA+GF Q G D+ ET+SP++KP T+RL+L+
Sbjct: 60 PDRNAIGCKWVFRIKENSDGSVNRYKARLVAKGFLQQPGFDFNETFSPIIKPVTIRLILT 119
Query: 1038 LDISHSWPIRQLDIDNAFLNGELDIDLYMEQVPGFEQLDSKGNPLVCKLKKSLYGLKQAS 1217
L IS+ W I QLD++NAFLNG L+ +YM+Q PGFE DS LVCKL K+LYGLKQA
Sbjct: 120 LAISNHWDIHQLDVNNAFLNGSLNETVYMQQPPGFEVPDS---TLVCKLNKALYGLKQAP 176
Query: 1218 RAWCSKLAIVLQSFGFTISQADNSLYFKKEKGNCILILTYVDDIIITGSCQKEVERIITS 1397
R W +L L FGF S+ D SL+ + N + +L YVDDIIITG+ + +++I
Sbjct: 177 RQWFERLQYTLLQFGFKASKCDPSLFTYHMQSNIVYLLVYVDDIIITGNSFQFTQQLIDQ 236
Query: 1398 LHQVFSLKDLGHLHYFLGIEVTPTAQG-VLLSQHKYISDILEQAGMKGAKGLNTPMVTHP 1574
L+ +FSLK LG L YFLGIEV G VLL+Q KYI D+L++ M A +++PMV+
Sbjct: 237 LNSIFSLKQLGKLDYFLGIEVRHLQNGSVLLTQSKYIRDLLQRTNMLEANAISSPMVSSC 296
Query: 1575 VLSKDDGQPISNGTLYRKLVGALQYATISRPDISYSINKISQFMQNPLDTHWKALKRVLR 1754
LSK +++ T YR +VGALQYATI+RP++S+++NK+ QFM +PL++HW A+KR+LR
Sbjct: 297 KLSKHGSDTLADSTFYRSVVGALQYATITRPELSFAVNKVCQFMAHPLESHWNAVKRILR 356
Query: 1755 YLAGTIDYGLHF---KSDSPLVLTAFADADWGSDIDDRRSTSGYCIYLGKNLITWSSKKQ 1925
YL GT+ YGLH + P L A+ DADW +D DDRRSTSG I+LG NLI+W S+KQ
Sbjct: 357 YLKGTMFYGLHLQPARVHQPFSLYAYCDADWAADPDDRRSTSGAAIFLGPNLISWWSRKQ 416
Query: 1926 NIVSRSSTEAEYRSIAAATCELIWLQSLLNELGIQMNRPSIIWTDNLGERSLSANPVYHS 2105
+V+RSSTEAEYRS+A AT E++W+Q+LL+EL + + P+ I+ DN SL+ NPV HS
Sbjct: 417 PVVARSSTEAEYRSLAQATSEVLWIQTLLHELRVPFSTPT-IYCDNQSTVSLAHNPVLHS 475
Query: 2106 RTKHLELDLHFIREKVMNKAISVQHVPAIDQIADILTKPLSGQFFARLRNKLNV 2267
RTKH+E++L F+REKV+ ++VQH+PA DQ AD LTKPLS F LR+KL V
Sbjct: 476 RTKHMEINLFFVREKVLANQLTVQHIPASDQWADALTKPLSSTRFLILRDKLKV 529
>gb|KYP50410.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 538
Score = 570 bits (1470), Expect = 0.0
Identities = 289/538 (53%), Positives = 379/538 (70%), Gaps = 4/538 (0%)
Frame = +3
Query: 678 MVTRSKTGNLKPKSYAAVLQTPVEPTSHLQALKFPEWRKAMEQEYYALVKNGTWSLVPLP 857
M TR+K G +KP+ +L T +EP + QAL W AM+QEY AL+ NGTW+LV LP
Sbjct: 1 MTTRAKAGIVKPRLQPTLLLTHIEPKNTKQALASDTWLAAMKQEYNALLNNGTWTLVSLP 60
Query: 858 PDKGLINCKWIFKLKKNSDGSIARYKARLVARGFTQIAGLDYTETYSPVVKPATVRLVLS 1037
P+K I CKW+F++K+NSDG++ +YKARLVA+GF Q G DY ET+SPVVKP T+RL+L+
Sbjct: 61 PNKTAIGCKWVFRIKENSDGTVNKYKARLVAKGFHQQFGSDYNETFSPVVKPVTIRLILT 120
Query: 1038 LDISHSWPIRQLDIDNAFLNGELDIDLYMEQVPGFEQLDSKGNPLVCKLKKSLYGLKQAS 1217
L ++H W I+QLD++NAFLNG L ++YM Q PGFE D LVCKL K++YGLKQA
Sbjct: 121 LALTHHWSIQQLDVNNAFLNGNLQEEVYMSQPPGFESSD---KTLVCKLHKAIYGLKQAP 177
Query: 1218 RAWCSKLAIVLQSFGFTISQADNSLYFKKEKGNCILILTYVDDIIITGSCQKEVERIITS 1397
RAW KL L F IS+ D SL+ N I IL YVDDIIITG+ ++ II
Sbjct: 178 RAWFDKLKTTLFQLNFQISKCDPSLFVYSHDNNVIYILVYVDDIIITGNNSSTLQNIIAQ 237
Query: 1398 LHQVFSLKDLGHLHYFLGIEVTPTAQGVL-LSQHKYISDILEQAGMKGAKGLNTPMVTHP 1574
L+ FSLKDLG L +FLGIEV G L L+Q KYI D+L + M+ + +++PMV+
Sbjct: 238 LNSAFSLKDLGRLDFFLGIEVKSNTDGSLTLTQSKYIRDLLNRTNMENSNPISSPMVSGC 297
Query: 1575 VLSKDDGQPISNGTLYRKLVGALQYATISRPDISYSINKISQFMQNPLDTHWKALKRVLR 1754
LS+ + + TLYR +VGALQYATI+RP+IS+S+NK+ QFM NPL+ HW A+KR+LR
Sbjct: 298 KLSRTGSEKFLDVTLYRSVVGALQYATITRPEISFSVNKVCQFMSNPLEQHWSAVKRILR 357
Query: 1755 YLAGTIDYGLHFK---SDSPLVLTAFADADWGSDIDDRRSTSGYCIYLGKNLITWSSKKQ 1925
YL GT+ GLH + S+SPL + A+ DADW SD DDRRSTSG I++G NLI+W SKKQ
Sbjct: 358 YLKGTMFLGLHLQPAPSNSPLSIRAYCDADWASDPDDRRSTSGASIFVGPNLISWWSKKQ 417
Query: 1926 NIVSRSSTEAEYRSIAAATCELIWLQSLLNELGIQMNRPSIIWTDNLGERSLSANPVYHS 2105
+V+RSS EAEYRS+A AT E++W+Q+LL+EL + + P +++ DN+ +L+ NPV H+
Sbjct: 418 TVVARSSAEAEYRSLALATAEVLWIQTLLSELHVSHHTP-VVYCDNMSTVALAHNPVLHA 476
Query: 2106 RTKHLELDLHFIREKVMNKAISVQHVPAIDQIADILTKPLSGQFFARLRNKLNVASKT 2279
RTKH+ELDL F+REKV ++ V HVPAIDQ ADILTK LS F LR KL + +
Sbjct: 477 RTKHMELDLFFVREKVAANSLHVVHVPAIDQYADILTKALSPSRFCELRTKLKLVDSS 534
>gb|KYP34165.1| Copia protein [Cajanus cajan]
Length = 542
Score = 566 bits (1459), Expect = 0.0
Identities = 289/543 (53%), Positives = 384/543 (70%), Gaps = 3/543 (0%)
Frame = +3
Query: 678 MVTRSKTGNLKPKSYAAVLQTPVEPTSHLQALKFPEWRKAMEQEYYALVKNGTWSLVPLP 857
MVTR+K G KPK Y A EPT+ QAL+ +W++AM+ EY AL+KN TW LV LP
Sbjct: 1 MVTRAKAGIFKPKVYLAT----TEPTNVAQALEHKQWKQAMQAEYDALLKNCTWDLVSLP 56
Query: 858 PDKGLINCKWIFKLKKNSDGSIARYKARLVARGFTQIAGLDYTETYSPVVKPATVRLVLS 1037
PD+ I CKWIFK K + DGSI R+KARLVARGF Q GLDYT+T+SPVV+P ++R+VL+
Sbjct: 57 PDRKAITCKWIFKNKYSQDGSILRHKARLVARGFNQQPGLDYTDTFSPVVRPVSIRVVLA 116
Query: 1038 LDISHSWPIRQLDIDNAFLNGELDIDLYMEQVPGFEQLDSKGNP-LVCKLKKSLYGLKQA 1214
+ +S WPI Q+D+DNAFLNG+L ++YM Q GF Q G+P VCKL+K++YGLKQA
Sbjct: 117 IAVSKGWPIHQIDVDNAFLNGDLKEEIYMLQPQGFHQ----GSPNTVCKLRKAIYGLKQA 172
Query: 1215 SRAWCSKLAIVLQSFGFTISQADNSLYFKKEKGNCILILTYVDDIIITGSCQKEVERIIT 1394
RAW KL + L GF +++DNSL+ + I IL YVDD+IIT + + +I
Sbjct: 173 PRAWFQKLTLTLFRLGFIQAKSDNSLFISTSRTTSIYILVYVDDVIITSNSATAIRGLIQ 232
Query: 1395 SLHQVFSLKDLGHLHYFLGIEV-TPTAQGVLLSQHKYISDILEQAGMKGAKGLNTPMVTH 1571
+LHQ F LKDLG LH+FLGIEV + A GV LSQ +Y++DIL++ M A+ + TPM
Sbjct: 233 ALHQYFPLKDLGRLHHFLGIEVHSDNAGGVHLSQTRYVTDILDRLNMSNARPVKTPMAPA 292
Query: 1572 PVLSKDDGQPISNGTLYRKLVGALQYATISRPDISYSINKISQFMQNPLDTHWKALKRVL 1751
L+ D + + + YR +VGALQY TI+RPDI+Y++NK+ QFM NPLD HWKA KR+L
Sbjct: 293 SKLTNDGTEACQDPSQYRSIVGALQYLTITRPDIAYTVNKLCQFMHNPLDVHWKATKRLL 352
Query: 1752 RYLAGTIDYGLHFKSDSPLVLTAFADADWGSDIDDRRSTSGYCIYLGKNLITWSSKKQNI 1931
RYL GT+ +GLH+K + + A+ D+DW SD +D RSTSG C+YLG N+++W +KKQ +
Sbjct: 353 RYLKGTLHHGLHYKKFTDTEIYAYCDSDWASDQEDLRSTSGNCVYLGSNIVSWMAKKQKV 412
Query: 1932 VSRSSTEAEYRSIAAATCELIWLQSLLNELG-IQMNRPSIIWTDNLGERSLSANPVYHSR 2108
VSRSSTEAE+RS+A+ E+ ++Q+LL+ELG I N+P +IW DN G LS NPV H+R
Sbjct: 413 VSRSSTEAEFRSMASLVAEIQYVQNLLSELGHINKNQP-LIWCDNQGAVLLSLNPVLHTR 471
Query: 2109 TKHLELDLHFIREKVMNKAISVQHVPAIDQIADILTKPLSGQFFARLRNKLNVASKTSLE 2288
TKH ELDL FIRE+V I V+H+PA Q+AD+LTK S F LR+KL V +++L
Sbjct: 472 TKHFELDLWFIRERVAQGKIVVKHIPARLQVADLLTKAPSTAIFLDLRDKLVVDRQSTLS 531
Query: 2289 MRG 2297
+RG
Sbjct: 532 LRG 534
>gb|KHN21230.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Glycine soja]
Length = 1429
Score = 592 bits (1526), Expect = 0.0
Identities = 306/559 (54%), Positives = 388/559 (69%), Gaps = 4/559 (0%)
Frame = +3
Query: 621 IDPVVISNENFESAAGTHHMVTRSKTGNLKPKSYAAVLQTPVEPTSHLQALKFPEWRKAM 800
IDP + THHM+TRSKTG+LKP + + T EPT+ QAL W +AM
Sbjct: 873 IDPNSTPTSSPSPTTNTHHMLTRSKTGHLKPPLFPTINLTTTEPTTVQQALSSIHWTEAM 932
Query: 801 EQEYYALVKNGTWSLVPLPPDKGLINCKWIFKLKKNSDGSIARYKARLVARGFTQIAGLD 980
+QEY AL N TWSLVPLPP K I CKWIF++K+N DG+I +YKARLVA+GF Q G D
Sbjct: 933 QQEYQALQANKTWSLVPLPPHKRAIGCKWIFRIKENPDGTINKYKARLVAKGFNQKYGQD 992
Query: 981 YTETYSPVVKPATVRLVLSLDISHSWPIRQLDIDNAFLNGELDIDLYMEQVPGFEQLDSK 1160
Y++TYSPVVKP TVR VL++ ++ WP+ QLD++NAFLNG+L D+YM+Q GF Q +S
Sbjct: 993 YSDTYSPVVKPITVRTVLTIALTSKWPLIQLDVNNAFLNGQLHEDVYMQQPQGFIQGES- 1051
Query: 1161 GNPLVCKLKKSLYGLKQASRAWCSKLAIVLQSFGFTISQADNSLYFKKEKGNCILILTYV 1340
LVCKL K++YGLKQA RAW L L SFGF S+ D SL + G C+LIL YV
Sbjct: 1052 --TLVCKLHKAIYGLKQAPRAWYESLTNTLISFGFQQSKCDPSLLIFNKHGCCLLILIYV 1109
Query: 1341 DDIIITGSCQKEVERIITSLHQVFSLKDLGHLHYFLGIEVTPTAQGVL-LSQHKYISDIL 1517
DDIIITGS + I+ L+ FSLK LG L YFLGIE T G L LSQ KYI DIL
Sbjct: 1110 DDIIITGSSNTAINLIVNKLNATFSLKQLGTLEYFLGIECKLTPSGALHLSQAKYIRDIL 1169
Query: 1518 EQAGMKGAKGLNTPMVTHPVLSKDDGQPISNGTLYRKLVGALQYATISRPDISYSINKIS 1697
+AGM+ KG++TP+ + LSK P N TLYR +VGALQYATI+RP++ YS++K+
Sbjct: 1170 HRAGMEDCKGISTPLPANLKLSKTGADPFDNPTLYRSIVGALQYATITRPELGYSVSKVC 1229
Query: 1698 QFMQNPLDTHWKALKRVLRYLAGTIDYGLHF---KSDSPLVLTAFADADWGSDIDDRRST 1868
QF PL +HW A+KR+LRYL G+ID+GL + +PL + AF DADW SDIDDRRST
Sbjct: 1230 QFFAQPLVSHWSAVKRILRYLKGSIDHGLTLLPATTSAPLSINAFCDADWASDIDDRRST 1289
Query: 1869 SGYCIYLGKNLITWSSKKQNIVSRSSTEAEYRSIAAATCELIWLQSLLNELGIQMNRPSI 2048
SG CI+ G NL++W SKKQ +V++SS EAEYRS+A A E++WLQSLL+EL + + P +
Sbjct: 1290 SGACIFFGPNLVSWWSKKQTLVAKSSAEAEYRSLAHAASEVLWLQSLLHELKVPI-PPPV 1348
Query: 2049 IWTDNLGERSLSANPVYHSRTKHLELDLHFIREKVMNKAISVQHVPAIDQIADILTKPLS 2228
I+ DN ++S NPV HSRTKH+ELD+ F+REKV+NK++ V ++PA Q+ADILTK LS
Sbjct: 1349 IYCDNQSAVAISHNPVLHSRTKHMELDIFFVREKVLNKSLVVSYIPAQLQVADILTKSLS 1408
Query: 2229 GQFFARLRNKLNVASKTSL 2285
F R+KL V S L
Sbjct: 1409 KHLFYNFRSKLRVLSTAEL 1427
Score = 208 bits (529), Expect = 1e-50
Identities = 110/264 (41%), Positives = 157/264 (59%), Gaps = 9/264 (3%)
Frame = +1
Query: 3826 FYILDQETKEVLLRGKVNN-GLYCFDLTSLNEXXXXXXXXXXXXXXNPIFLQQQTSPN-- 3996
F + Q+ ++LL+GK++ GLY PI Q T+ +
Sbjct: 459 FVMKSQDNDQILLQGKLDKAGLY------------------------PIHSQSSTTSSLS 494
Query: 3997 -----VHVLNVKNKDSINLWHSRLGHTSFDTVQRVLKTCNI-SFDINEVEPVCSSCIKAK 4158
VH + + D WH RLGHT+ DT+ VLK+CN+ +F+ N+ + C SC K
Sbjct: 495 SRHHSVHSIVTSHNDLYFQWHHRLGHTNLDTMNNVLKSCNMPTFNKNKTD-FCISCCLGK 553
Query: 4159 SHTLPFSLSDTNHYNVLDLIYTDLWGPAPIRSVNGYSYYISFVDHCSRFTWLYLMKAKSD 4338
SH LP LS + + + L+LIY DLWGPAP++S GY YYISF+D S++ W+Y + KS+
Sbjct: 554 SHRLPSQLSQSTYNSPLELIYCDLWGPAPMQSSMGYKYYISFIDAFSKYIWVYFLHDKSE 613
Query: 4339 TSQVFIHFKTLVENQFDKKIKSIQSGGGTEFKPLSKFFNDNGIVHRISCPYTPQQNGLVE 4518
T +F FK L E Q + KIK+IQS G EF+ + + + GI+HRI CP+T QNG+VE
Sbjct: 614 TLTIFKQFKALAELQLNTKIKAIQSDWGGEFRSFTSYLSQLGIIHRIICPHTHHQNGVVE 673
Query: 4519 RKHRHIVETGLSMISNAHMPTKFW 4590
RKHRHIVE GLS++S++ +P +W
Sbjct: 674 RKHRHIVEMGLSLLSHSSLPYHYW 697
Score = 140 bits (352), Expect = 1e-29
Identities = 115/423 (27%), Positives = 182/423 (43%), Gaps = 51/423 (12%)
Frame = +3
Query: 2727 VNVKLSESNYLVWKQQISAAIEGYGLESFINGDCSKPQ---QYTTLNDK--QMVNPEYIN 2891
++VKL +NYLVW QQI + + L F C P+ QY + +D+ + NP + N
Sbjct: 6 ISVKLDATNYLVWLQQIEPVLRAHRLHRF----CVTPEIPPQYASEHDRLANIENPAFSN 61
Query: 2892 WKRQDQXXXXXXXXXXXXXXXVTMVGLTSSRDIWEALEVSFATQSRAKIMQYRLQLQTLK 3071
W+ QDQ +++G + +WE + SF ++++A+ Q R QL+T K
Sbjct: 62 WELQDQLLLAWLQSSLSPAILPSVIGCKHTFQLWENIHQSFQSKTKAQARQLRTQLRTTK 121
Query: 3072 KRDMPMREFLNKIKTCCDMLAAAGQRLTDEEQISYILTGLGNDYNSVMVSVNSRIEPYSL 3251
K + EFL KIK D L + G+ ++ ++Q+ IL GL N++ S++ +NS+IE + L
Sbjct: 122 KGSSSISEFLAKIKHISDSLTSIGESVSLQDQLDVILEGLPNEFESLVTLINSKIEWFDL 181
Query: 3252 REVHALLLSFESRLEGLDIPQNQFGMDGS----------------------SPMVNYVVQ 3365
E+ ALLL+ E RL+ I + ++ + +P N+
Sbjct: 182 EEIRALLLAHEQRLDKARITEEAASLNFTQSQPNSKTPNSVNPNSATETQIAPQANWT-- 239
Query: 3366 GTGNRRGG--FPQNNRGRGMNQSLVQXXXXXXXXXXXXXXXXXXXXXXXFTTPKMTCQIC 3539
TGN G QNN + NQS + + CQ+C
Sbjct: 240 -TGNSNSGNYDSQNNNFKNNNQSRGRGGRNGRGNRGGRGG-----------RSTVQCQVC 287
Query: 3540 HRTNHTADKCFYR------ADLSYMPGN----------NNSSNAYSPGGTVNVAQYHSES 3671
HRT H A C++R ++ Y+ GN NN++ A S A + +
Sbjct: 288 HRTGHDASYCYHRFNAAYGSNQPYVHGNPYQYVRNTTPNNNNWAQSNPQWQQAAPQANFT 347
Query: 3672 VTKPAGNMDESCWFP------DSGATHHVTYDFGNLNLASDYTGADKVQVGNGTGLDILH 3833
P N P D+ AT HVT A + + + +GNG GL +
Sbjct: 348 GYAPQTNFTGYAMHPTMNNNLDTAATQHVTLMQPPPGSAPPPSHLEHIFLGNGQGLRVTG 407
Query: 3834 IGS 3842
I S
Sbjct: 408 ISS 410
Score = 103 bits (258), Expect = 1e-18
Identities = 57/125 (45%), Positives = 81/125 (64%), Gaps = 3/125 (2%)
Frame = +3
Query: 3 NAHMPTKFWDDAFSTAVFIINRLPAKVLNFQTPLEKLTGHKPRYSLLKTFGCLCFPHLRP 182
++ +P +WD AF TAV+IINRLPA N PL+ L + P Y+ L+ FGC C+P L P
Sbjct: 689 HSSLPYHYWDHAFHTAVYIINRLPASH-NHCIPLKVLFNNVPDYNFLRAFGCACYPLLTP 747
Query: 183 YNKHKLEYRSQPGTFIGYSLQYKGYKVLLDN--GKVLITRNVVFDETKFPFQ-THTTSCL 353
YN K +YRS+ F+GYS +GYK LDN G++ I+++V+F+E FP+Q T T+C
Sbjct: 748 YNNPKFQYRSKECIFLGYST--RGYK-CLDNKSGRIYISKDVLFNEKHFPYQITPPTTCS 804
Query: 354 STPSV 368
+V
Sbjct: 805 PNQTV 809
>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
Length = 1455
Score = 591 bits (1524), Expect = 0.0
Identities = 287/548 (52%), Positives = 392/548 (71%)
Frame = +3
Query: 654 ESAAGTHHMVTRSKTGNLKPKSYAAVLQTPVEPTSHLQALKFPEWRKAMEQEYYALVKNG 833
+ A TH M+TR+K+G +KPK + A ++ EP+S AL+ EW+KAM EY AL +N
Sbjct: 908 KDADNTHPMITRAKSGIVKPKIFIAAIR---EPSSVSAALQQDEWKKAMVAEYDALQRNN 964
Query: 834 TWSLVPLPPDKGLINCKWIFKLKKNSDGSIARYKARLVARGFTQIAGLDYTETYSPVVKP 1013
TWSLVPLP + I CKW++K K+N DG++ +YKARLVA+GF Q AG D+TET+SPVVKP
Sbjct: 965 TWSLVPLPAGRQAIGCKWVYKTKENPDGTVQKYKARLVAKGFHQQAGFDFTETFSPVVKP 1024
Query: 1014 ATVRLVLSLDISHSWPIRQLDIDNAFLNGELDIDLYMEQVPGFEQLDSKGNPLVCKLKKS 1193
+TVR+V ++ +S +W I+QLD++NAFLNG+L +++M+Q GF +D + LVC+L K+
Sbjct: 1025 STVRVVFTIALSRNWAIKQLDVNNAFLNGDLQEEVFMQQPQGF--IDEQNPNLVCRLHKA 1082
Query: 1194 LYGLKQASRAWCSKLAIVLQSFGFTISQADNSLYFKKEKGNCILILTYVDDIIITGSCQK 1373
LYGLKQA RAW KL L SFGF +++D SL+ + + +L YVDDI++ GS
Sbjct: 1083 LYGLKQAPRAWFEKLHRALLSFGFVSAKSDQSLFLRFTPNHITYVLVYVDDILVIGSDTA 1142
Query: 1374 EVERIITSLHQVFSLKDLGHLHYFLGIEVTPTAQGVLLSQHKYISDILEQAGMKGAKGLN 1553
+ +I L+ FSLKDLG +HYFLGI+V+ T G+ LSQ KYI D+L++ M K
Sbjct: 1143 AITSLIAQLNSEFSLKDLGEVHYFLGIQVSHTNNGLHLSQTKYIRDLLQKTKMVHCKPAR 1202
Query: 1554 TPMVTHPVLSKDDGQPISNGTLYRKLVGALQYATISRPDISYSINKISQFMQNPLDTHWK 1733
TP+ T L DG P+ + YR VGALQY TI+RP++S+S+NK+ QFMQNP + HWK
Sbjct: 1203 TPLPTGLKLRVGDGDPVEDLHGYRSTVGALQYVTITRPELSFSVNKVCQFMQNPTEEHWK 1262
Query: 1734 ALKRVLRYLAGTIDYGLHFKSDSPLVLTAFADADWGSDIDDRRSTSGYCIYLGKNLITWS 1913
+KR+LRYL GT+ +GLH K S L L F DADW SD+DDRRSTSG+C++LG NLI+W
Sbjct: 1263 VVKRILRYLQGTLQHGLHLKKSSNLDLIGFCDADWASDLDDRRSTSGHCVFLGPNLISWQ 1322
Query: 1914 SKKQNIVSRSSTEAEYRSIAAATCELIWLQSLLNELGIQMNRPSIIWTDNLGERSLSANP 2093
SKKQ+IVSRSS E EYRS+A E+ WL+SLL+EL + + +P ++W DNL LSANP
Sbjct: 1323 SKKQHIVSRSSIEIEYRSLAGLVAEITWLRSLLSELQLPLAKPPLVWCDNLSTVLLSANP 1382
Query: 2094 VYHSRTKHLELDLHFIREKVMNKAISVQHVPAIDQIADILTKPLSGQFFARLRNKLNVAS 2273
V H+RTKH+ELDL+F+REKV+ K + V+HVP+ DQ+AD+LTK +S F R+KL + +
Sbjct: 1383 VLHARTKHIELDLYFVREKVIRKEVEVRHVPSADQLADVLTKTVSSTQFIEFRHKLRIEN 1442
Query: 2274 KTSLEMRG 2297
++L +RG
Sbjct: 1443 LSTLSLRG 1450
Score = 221 bits (564), Expect = 9e-55
Identities = 114/255 (44%), Positives = 160/255 (62%), Gaps = 1/255 (0%)
Frame = +1
Query: 3829 YILDQETKEVLLRGKVNNGLYCFDLTSLNEXXXXXXXXXXXXXXNPIFLQQQTSPNVHVL 4008
++ DQ T+ VL+ GKV +GLY FD + L +P + S V
Sbjct: 462 FVKDQVTQAVLMVGKVRDGLYAFDSSHL------ALRPTQSLSKSPSVVASSFSSKVCTT 515
Query: 4009 NVKNKDSINLWHSRLGHTSFDTVQRVLKTCNISFDINEVEP-VCSSCIKAKSHTLPFSLS 4185
++ + + +LWH RLGH S T++ VL CN++ IN+++ CSSC K H PFSLS
Sbjct: 516 SLSS--TFDLWHKRLGHPSAATIKNVLSKCNVAH-INKMDSNFCSSCCLGKIHRFPFSLS 572
Query: 4186 DTNHYNVLDLIYTDLWGPAPIRSVNGYSYYISFVDHCSRFTWLYLMKAKSDTSQVFIHFK 4365
T + L+LI+ DLWGP + S +GY YYI FVD SRF+W++L++ KS+ + F++FK
Sbjct: 573 HTTYTKPLELIHLDLWGPTLVLSNSGYRYYIHFVDAFSRFSWIFLLRNKSEAIKTFVNFK 632
Query: 4366 TLVENQFDKKIKSIQSGGGTEFKPLSKFFNDNGIVHRISCPYTPQQNGLVERKHRHIVET 4545
T VE QFD KIKS+Q+ G EF+ + +NGIVHR+SCP+T QQNG+ ERKHR IVE
Sbjct: 633 TQVELQFDLKIKSLQTDWGGEFRAFQSYLAENGIVHRVSCPHTQQQNGVAERKHRTIVEH 692
Query: 4546 GLSMISNAHMPTKFW 4590
GL+++ A +P KFW
Sbjct: 693 GLTLLHTASLPLKFW 707
Score = 163 bits (413), Expect = 7e-37
Identities = 129/417 (30%), Positives = 186/417 (44%), Gaps = 26/417 (6%)
Frame = +3
Query: 2667 NKETPATTTLPPIIYPQSQLVNVKLSESNYLVWKQQISAAIEGYGLESFINGDCSKPQQY 2846
N ++T PI + S ++VKL N+L+WKQQI +AI GYGL+ F+ D +
Sbjct: 13 NPNALSSTRFVPINFNHS--LSVKLDNKNFLIWKQQIVSAIRGYGLQKFVFSDDEVQFNF 70
Query: 2847 TTLNDKQMVNPEYINWKRQDQXXXXXXXXXXXXXXXVTMVGLTSSRDIWEALEVSFATQS 3026
+ PE K +D +G + LE FA+Q+
Sbjct: 71 S---------PE----KMRDLEKQLRNSSSGNNRINYCSLGFSHLFLSQYFLEQYFASQT 117
Query: 3027 RAKIMQYRLQLQTLKKRDMPMREFLNKIKTCCDMLAAAGQRLTDEEQISYILTGLGNDYN 3206
RAK Q++ QLQ KK + E+L KIK C D LA+ G L+ ++ + IL GL NDY
Sbjct: 118 RAKAKQFKTQLQHTKKGGSTIDEYLAKIKVCVDSLASVGVSLSTKDHVESILDGLPNDYE 177
Query: 3207 SVMVSVNSRIEPYSLREVHALLLSFESRLE----GLDIPQ-------------NQFGMD- 3332
S + SV R + +S+ E+ ALL++ ESR+E LD N+F D
Sbjct: 178 SFVTSVILRNDDFSVEEIEALLMAHESRVEKNNNSLDSSPSAHVASSNAVEKGNRFKQDY 237
Query: 3333 ------GSSPMVN--YVVQGTGNRRGGFPQNNRGRGMNQSLVQXXXXXXXXXXXXXXXXX 3488
GS N + G RRGGF RG N +
Sbjct: 238 YAANSQGSHSGYNGGFGRGGDFGRRGGF-YGGRGFNWNYNGRSNRGGFRGRGNKGSFQAR 296
Query: 3489 XXXXXXFTTPKMTCQICHRTNHTADKCFYRADLSYMPGNNNSSNAYSPGGTVNVAQYHSE 3668
K CQ+C + H +C+YR D ++ N SS SP + +
Sbjct: 297 PPWNSDNQNEKPACQLCGKIGHVVAQCYYRFDHTFQVPQNLSSRNSSPRAYYSFSP-QVN 355
Query: 3669 SVTKPAGNMDESCWFPDSGATHHVTYDFGNLNLASDYTGADKVQVGNGTGLDILHIG 3839
V + + W+PDSGA++HVT + NL ++++ G ++V VGNGTGL I HIG
Sbjct: 356 GVIPTSEVFSDDNWYPDSGASNHVTPNPENLMKSAEFAGQNQVHVGNGTGLSIKHIG 412
Score = 139 bits (349), Expect = 2e-29
Identities = 62/118 (52%), Positives = 85/118 (72%), Gaps = 2/118 (1%)
Frame = +3
Query: 6 AHMPTKFWDDAFSTAVFIINRLPAKVLNFQTPLEKLTGHKPRYSLLKTFGCLCFPHLRPY 185
A +P KFWD++F T V++ NRLP +L+ + P+E L P YS LK FGC CFP+LRPY
Sbjct: 700 ASLPLKFWDESFRTVVYLSNRLPTAILHHKCPIEVLFKSIPDYSFLKVFGCSCFPNLRPY 759
Query: 186 NKHKLEYRSQPGTFIGYSLQYKGYKVLLDNGKVLITRNVVFDETKFPFQ--THTTSCL 353
N HKL+YRS+ TF+GYSL++KGYK + NG+V I+ +V+F+ET FP+ +SCL
Sbjct: 760 NTHKLQYRSEECTFLGYSLKHKGYKCMSSNGRVYISHDVIFNETSFPYSKTIQVSSCL 817
>gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1073
Score = 578 bits (1491), Expect = 0.0
Identities = 297/571 (52%), Positives = 394/571 (69%), Gaps = 4/571 (0%)
Frame = +3
Query: 567 NTFIPGGQITIDLPINRHIDPVVISNENFESAAGTHHMVTRSKTGNLKPKSYAAVLQTPV 746
NT T+ +P + +++P S+ H M TR+K G +KP+ +L T V
Sbjct: 503 NTAAHTSPSTLSIPTSSNLEP---SSSPIIHPHNVHPMTTRAKDGIVKPRLQPTLLLTQV 559
Query: 747 EPTSHLQALKFPEWRKAMEQEYYALVKNGTWSLVPLPPDKGLINCKWIFKLKKNSDGSIA 926
EP + QAL P W AM+ EY AL+ N TWSLVPLPP + I CKW+F++K+N +GS+
Sbjct: 560 EPKTTKQALSNPTWSAAMQTEYNALLHNNTWSLVPLPPHRTAIGCKWVFRVKENPNGSVQ 619
Query: 927 RYKARLVARGFTQIAGLDYTETYSPVVKPATVRLVLSLDISHSWPIRQLDIDNAFLNGEL 1106
+YKARLVA+GF Q G DY ET+SPV+KP TVRL+L+L ++H WPI+QLD++NAFLNG L
Sbjct: 620 KYKARLVAKGFNQQFGFDYHETFSPVIKPVTVRLILTLALTHRWPIQQLDVNNAFLNGTL 679
Query: 1107 DIDLYMEQVPGFEQLDSKGNPLVCKLKKSLYGLKQASRAWCSKLAIVLQSFGFTISQADN 1286
+ ++YM+Q PGFE D LVCKL K++YGLKQA RAW KL L F S+ D
Sbjct: 680 EEEVYMQQPPGFEASDKN---LVCKLHKAIYGLKQAPRAWFDKLKSTLLQLNFYASKCDP 736
Query: 1287 SLYFKKEKGNCILILTYVDDIIITGSCQKEVERIITSLHQVFSLKDLGHLHYFLGIEVTP 1466
SL+ + N I IL YVDDIIITG+ + +++ LH +FSLKDLG L +FLGIEV
Sbjct: 737 SLFIYSQGNNVIYILVYVDDIIITGNNSSILHTLVSQLHSIFSLKDLGDLDFFLGIEVKS 796
Query: 1467 TAQG-VLLSQHKYISDILEQAGMKGAKGLNTPMVTHPVLSKDDGQPISNGTLYRKLVGAL 1643
G ++L+Q KYI D+L + M+G+K +++PM++ LSK + + +LYR +VGAL
Sbjct: 797 QPDGSLILTQSKYIRDLLNRTDMEGSKPISSPMISGSKLSKVGSEDFLDASLYRSVVGAL 856
Query: 1644 QYATISRPDISYSINKISQFMQNPLDTHWKALKRVLRYLAGTIDYGLHFK---SDSPLVL 1814
QYATI+RP+IS+S+NK+ QFM +PL HW A+KR+LRYL GT +GL + S S L +
Sbjct: 857 QYATITRPEISFSVNKVCQFMSHPLTHHWAAVKRILRYLKGTTSWGLRLQPASSSSSLSI 916
Query: 1815 TAFADADWGSDIDDRRSTSGYCIYLGKNLITWSSKKQNIVSRSSTEAEYRSIAAATCELI 1994
A+ DADW SD DDRRSTSG I+LG NL++W SKKQ +V+RSSTEAEYRS+A AT E+
Sbjct: 917 HAYCDADWASDPDDRRSTSGASIFLGPNLVSWWSKKQTVVARSSTEAEYRSLALATTEVT 976
Query: 1995 WLQSLLNELGIQMNRPSIIWTDNLGERSLSANPVYHSRTKHLELDLHFIREKVMNKAISV 2174
W+Q+LL+EL + + P II+ DNL +L+ NPV H+RTKH+ELDL F+REKV K + V
Sbjct: 977 WIQTLLSELKVTHSTP-IIFCDNLSTVALAHNPVLHARTKHMELDLFFVREKVAAKCLQV 1035
Query: 2175 QHVPAIDQIADILTKPLSGQFFARLRNKLNV 2267
HVPAIDQ AD+LTK LS F LR+KL V
Sbjct: 1036 VHVPAIDQCADVLTKALSPTRFCELRSKLQV 1066
Score = 205 bits (521), Expect = 5e-50
Identities = 104/259 (40%), Positives = 151/259 (58%), Gaps = 3/259 (1%)
Frame = +1
Query: 3823 IFYILDQETKEVLLRGKV-NNGLYCFDLTSLNEXXXXXXXXXXXXXXNPIFLQQQTSPNV 3999
I + Q+T EVLL+G V ++GLY F N +QQQ +
Sbjct: 105 ICLVKSQDTNEVLLQGSVGSDGLYKFPALLPNPSTQS--------------VQQQQLARI 150
Query: 4000 HVLNVKNKDSINL--WHSRLGHTSFDTVQRVLKTCNISFDINEVEPVCSSCIKAKSHTLP 4173
+N ++ WHSRLGH + D ++ V + NI N C+ C KSH LP
Sbjct: 151 FSVNTAATSPVSFATWHSRLGHPNVDVMKHVSRNYNIQLVSNNKSNFCTPCCLGKSHRLP 210
Query: 4174 FSLSDTNHYNVLDLIYTDLWGPAPIRSVNGYSYYISFVDHCSRFTWLYLMKAKSDTSQVF 4353
+LS T + DL+Y+DLWGPAP+ S GY YY++FVD +RFTW+YL+K+K+ T VF
Sbjct: 211 SNLSRTIYNTPFDLVYSDLWGPAPVTSTCGYQYYVTFVDAHTRFTWIYLLKSKAQTFNVF 270
Query: 4354 IHFKTLVENQFDKKIKSIQSGGGTEFKPLSKFFNDNGIVHRISCPYTPQQNGLVERKHRH 4533
F +V+NQ+ IK++Q+ G E++ + + N+ GI HR+ CP+T QNG+ ERKHRH
Sbjct: 271 KQFHAMVKNQYHHPIKALQTDWGGEYRSFTTYLNEVGIQHRLICPHTHHQNGVAERKHRH 330
Query: 4534 IVETGLSMISNAHMPTKFW 4590
IVE GL++++ A +P +FW
Sbjct: 331 IVELGLTLMAQAELPMQFW 349
Score = 132 bits (333), Expect = 1e-27
Identities = 60/120 (50%), Positives = 84/120 (70%)
Frame = +3
Query: 6 AHMPTKFWDDAFSTAVFIINRLPAKVLNFQTPLEKLTGHKPRYSLLKTFGCLCFPHLRPY 185
A +P +FWD +F TAV++INRLP+ + P KL P Y L+ FGC CFPHLRPY
Sbjct: 342 AELPMQFWDHSFLTAVYLINRLPSSSIQNAVPYHKLFHQPPDYLSLRIFGCSCFPHLRPY 401
Query: 186 NKHKLEYRSQPGTFIGYSLQYKGYKVLLDNGKVLITRNVVFDETKFPFQTHTTSCLSTPS 365
NKHKL++RSQ F+GYS +KGYK L +G++ I+++VVF+ETKFP++ +S ++ S
Sbjct: 402 NKHKLQFRSQECVFLGYSTSHKGYKCLAADGRLYISKDVVFNETKFPYKDLFSSSKASDS 461
>gb|KYP64898.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1007
Score = 575 bits (1482), Expect = e-180
Identities = 291/568 (51%), Positives = 393/568 (69%), Gaps = 6/568 (1%)
Frame = +3
Query: 627 PVVISNENFESAAGTHHMVTRSKTGNLKPKSYAAVL-----QTPVEPTSHLQALKFPEWR 791
P++ + H M TRSK G KPK+YAA L +EP + +AL PEW
Sbjct: 443 PIIEPGVSSSGPQNAHLMTTRSKAGIFKPKTYAAALVKSSYDHTIEPNTVKEALAKPEWL 502
Query: 792 KAMEQEYYALVKNGTWSLVPLPPDKGLINCKWIFKLKKNSDGSIARYKARLVARGFTQIA 971
KAM+ EY ALV N TWSLV LP I CKWIFK K N DGS R+KARLVA+G+ Q
Sbjct: 503 KAMKDEYQALVSNQTWSLVDLPIGYKPIGCKWIFKSKYNPDGSFQRHKARLVAKGYNQKP 562
Query: 972 GLDYTETYSPVVKPATVRLVLSLDISHSWPIRQLDIDNAFLNGELDIDLYMEQVPGFEQL 1151
GLD++ET+SPVVKP TVR+VLSL I++ WPI Q+DI+N FL+G+L +YM Q PGF
Sbjct: 563 GLDFSETFSPVVKPTTVRIVLSLAITNQWPIHQIDINNVFLHGDLQESVYMSQPPGF--- 619
Query: 1152 DSKGNPLVCKLKKSLYGLKQASRAWCSKLAIVLQSFGFTISQADNSLYFKKEKGNCILIL 1331
+++ VCKL K++YGLKQA R+W KL+ L GF +++D SL+ + K +++L
Sbjct: 620 NTQHKDKVCKLNKAIYGLKQAPRSWYCKLSNTLIQMGFHSTKSDTSLFVRFSKTTTLMLL 679
Query: 1332 TYVDDIIITGSCQKEVERIITSLHQVFSLKDLGHLHYFLGIEVTPTAQG-VLLSQHKYIS 1508
YVDDIIITG+ ++E+ +I+ LH FSLKDLG LHYFLG+EVT T +G +LL+Q KY+
Sbjct: 680 IYVDDIIITGNSKEEIRSVISFLHDKFSLKDLGSLHYFLGVEVTTTKEGNLLLTQTKYLR 739
Query: 1509 DILEQAGMKGAKGLNTPMVTHPVLSKDDGQPISNGTLYRKLVGALQYATISRPDISYSIN 1688
+IL +A M + TPM+ + L++++ + + + YR +VGALQY TI+RPD+S+++N
Sbjct: 740 EILHKASMSDSTPQPTPMLANLKLTENETTSVPDPSFYRSIVGALQYLTITRPDVSFAVN 799
Query: 1689 KISQFMQNPLDTHWKALKRVLRYLAGTIDYGLHFKSDSPLVLTAFADADWGSDIDDRRST 1868
K+ Q+M P + HWKA+KR+LRYL GTI +GL + + L L F D+DWG+D DDR+ST
Sbjct: 800 KVCQYMHCPQEHHWKAVKRILRYLQGTIHHGLLIQKNKQLNLAGFCDSDWGNDKDDRKST 859
Query: 1869 SGYCIYLGKNLITWSSKKQNIVSRSSTEAEYRSIAAATCELIWLQSLLNELGIQMNRPSI 2048
SGYC+YLG NLI+WSS+KQ VSRS+TEAEYRSIA ++IW+QSLL+EL + + P
Sbjct: 860 SGYCVYLGSNLISWSSRKQKSVSRSTTEAEYRSIADVAADIIWIQSLLSELRVPKSLPR- 918
Query: 2049 IWTDNLGERSLSANPVYHSRTKHLELDLHFIREKVMNKAISVQHVPAIDQIADILTKPLS 2228
I+ DNL ++ANPV HS+TKH ELDLHF+R+KV + V H+PA Q+AD LTKPL+
Sbjct: 919 IYCDNLSAVLITANPVLHSKTKHFELDLHFVRDKVKQNEVKVIHLPAKYQVADTLTKPLA 978
Query: 2229 GQFFARLRNKLNVASKTSLEMRGHDKGH 2312
Q F RNKL V + ++ +RG KG+
Sbjct: 979 KQHFHHFRNKLMVTTLDTMSLRGDVKGN 1006
Score = 194 bits (493), Expect = 8e-47
Identities = 98/250 (39%), Positives = 142/250 (56%)
Frame = +1
Query: 3841 QETKEVLLRGKVNNGLYCFDLTSLNEXXXXXXXXXXXXXXNPIFLQQQTSPNVHVLNVKN 4020
Q+T +++L+G++ GLY F + Q T N + ++
Sbjct: 49 QDTNQIILQGRLQQGLYVFPNLKTTDSYSAY--------------QAVTELN----SAQS 90
Query: 4021 KDSINLWHSRLGHTSFDTVQRVLKTCNISFDINEVEPVCSSCIKAKSHTLPFSLSDTNHY 4200
++ LWH+RLGH S V+ VL C IS + N C SC K H LPF S T +
Sbjct: 91 FSNLQLWHARLGHPSSKIVKTVLDKCQISCNTNN-NLNCHSCCLGKVHQLPFIQSTTVYS 149
Query: 4201 NVLDLIYTDLWGPAPIRSVNGYSYYISFVDHCSRFTWLYLMKAKSDTSQVFIHFKTLVEN 4380
L+L++TD+WGP+PI S +G YYI F+D S+++W+YL++ KS F+ K+L E
Sbjct: 150 KPLELVFTDIWGPSPIASTDGSRYYIVFLDAFSKYSWIYLLQYKSQALYAFLQLKSLAEK 209
Query: 4381 QFDKKIKSIQSGGGTEFKPLSKFFNDNGIVHRISCPYTPQQNGLVERKHRHIVETGLSMI 4560
Q K+K++QS EF S + NGI+HR+SCP+T QQNG ERKHRHI ETGL+++
Sbjct: 210 QLGTKLKALQSDNAKEFLTFSPYLKQNGIIHRLSCPHTHQQNGSPERKHRHITETGLTLL 269
Query: 4561 SNAHMPTKFW 4590
+ A +P FW
Sbjct: 270 AQASLPLSFW 279
Score = 112 bits (279), Expect = 3e-21
Identities = 56/118 (47%), Positives = 70/118 (59%)
Frame = +3
Query: 6 AHMPTKFWDDAFSTAVFIINRLPAKVLNFQTPLEKLTGHKPRYSLLKTFGCLCFPHLRPY 185
A +P FW +AF TA +IN LP L+ +P E L P Y LK FGC C+P LRPY
Sbjct: 272 ASLPLSFWGEAFLTATSLINMLPTPNLDNASPYEMLFHKAPDYKFLKIFGCACYPLLRPY 331
Query: 186 NKHKLEYRSQPGTFIGYSLQYKGYKVLLDNGKVLITRNVVFDETKFPFQTHTTSCLST 359
N HK +++SQ F+GYS +KGY L +GK I+RNV F ET FP QT + T
Sbjct: 332 NPHKFDFKSQQCLFLGYSPSHKGYICLSPSGKRYISRNVKFFETVFPCQTQPNPFIPT 389
>gb|KYP32233.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 537
Score = 552 bits (1422), Expect = e-178
Identities = 284/534 (53%), Positives = 373/534 (69%), Gaps = 4/534 (0%)
Frame = +3
Query: 678 MVTRSKTGNLKPKSYAAVLQTPVEPTSHLQALKFPEWRKAMEQEYYALVKNGTWSLVPLP 857
M TR+K G +KP+ +L T VEP + QAL P W AM+ EY AL+ NGTWSLVPLP
Sbjct: 1 MTTRAKDGIVKPRLQPTLLLTHVEPKTTKQALSNPTWTAAMQTEYNALLHNGTWSLVPLP 60
Query: 858 PDKGLINCKWIFKLKKNSDGSIARYKARLVARGFTQIAGLDYTETYSPVVKPATVRLVLS 1037
P + I CKW+F++K+N +G++ +YKA LVA+GF Q G DY ET+SPV+KP TVRL+L+
Sbjct: 61 PHRTAIGCKWVFRVKENPNGTVQKYKACLVAKGFNQQFGFDYHETFSPVIKPVTVRLILT 120
Query: 1038 LDISHSWPIRQLDIDNAFLNGELDIDLYMEQVPGFEQLDSKGNPLVCKLKKSLYGLKQAS 1217
L ++H WPI+QLD++NAFLNG L+ ++YM Q PGFE D LVCKL K++YGLKQA
Sbjct: 121 LALTHHWPIQQLDVNNAFLNGTLEEEVYMTQPPGFEASD---KCLVCKLHKAIYGLKQAP 177
Query: 1218 RAWCSKLAIVLQSFGFTISQADNSLYFKKEKGNCILILTYVDDIIITGSCQKEVERIITS 1397
RAW KL L F F S+ D SL+ N I IL YVDDIIIT + + +++
Sbjct: 178 RAWFEKLKSTLLQFHFQASKCDPSLFVYSHANNVIYILVYVDDIIITSNNSSILHTLVSQ 237
Query: 1398 LHQVFSLKDLGHLHYFLGIEVTPTAQG-VLLSQHKYISDILEQAGMKGAKGLNTPMVTHP 1574
LH VFSLKDLG L YFLGIEV + G ++L+Q KYI D+L + M+ K +++PM+
Sbjct: 238 LHSVFSLKDLGDLDYFLGIEVKTQSDGSLILTQSKYIRDLLNRTDMEALKPISSPMIPDS 297
Query: 1575 VLSKDDGQPISNGTLYRKLVGALQYATISRPDISYSINKISQFMQNPLDTHWKALKRVLR 1754
LSK + + +LYR +VGALQYATI+R +IS+S+NK+ QFM PL H A+KR+LR
Sbjct: 298 KLSKAGSEDFLDASLYRSVVGALQYATITRLEISFSVNKVCQFMSYPLAHHCSAVKRILR 357
Query: 1755 YLAGTIDYGLHFK---SDSPLVLTAFADADWGSDIDDRRSTSGYCIYLGKNLITWSSKKQ 1925
YL GT +GLH + S S L + A+ DADW SD+DDRRST G I+L NL++W SKK+
Sbjct: 358 YLKGTTSWGLHLQPASSSSSLSIHAYCDADWASDLDDRRSTFGASIFLRPNLVSWWSKKK 417
Query: 1926 NIVSRSSTEAEYRSIAAATCELIWLQSLLNELGIQMNRPSIIWTDNLGERSLSANPVYHS 2105
+V+RSST+AEYRS+A AT E+ W+Q+LL+EL + + P II+ DNL +L+ NP+ H+
Sbjct: 418 TVVARSSTKAEYRSLALATTEVTWIQTLLSELKVNHSTP-IIFCDNLSTVALAHNPILHA 476
Query: 2106 RTKHLELDLHFIREKVMNKAISVQHVPAIDQIADILTKPLSGQFFARLRNKLNV 2267
RTKH+ELDL F+REKV K + V HVPAIDQ AD+LTK LS F LR+KL V
Sbjct: 477 RTKHMELDLFFVREKVAAKCLQVVHVPAIDQCADVLTKALSPSRFCVLRSKLQV 530
>gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1408
Score = 578 bits (1491), Expect = e-177
Identities = 297/571 (52%), Positives = 394/571 (69%), Gaps = 4/571 (0%)
Frame = +3
Query: 567 NTFIPGGQITIDLPINRHIDPVVISNENFESAAGTHHMVTRSKTGNLKPKSYAAVLQTPV 746
NT T+ +P + +++P S+ H M TR+K G +KP+ +L T V
Sbjct: 838 NTAAHTSPSTLSIPTSSNLEP---SSSPIIHPHNVHPMTTRAKDGIVKPRLQPTLLLTQV 894
Query: 747 EPTSHLQALKFPEWRKAMEQEYYALVKNGTWSLVPLPPDKGLINCKWIFKLKKNSDGSIA 926
EP + QAL P W AM+ EY AL+ N TWSLVPLPP + I CKW+F++K+N +GS+
Sbjct: 895 EPKTTKQALSNPTWSAAMQTEYNALLHNNTWSLVPLPPHRTAIGCKWVFRVKENPNGSVQ 954
Query: 927 RYKARLVARGFTQIAGLDYTETYSPVVKPATVRLVLSLDISHSWPIRQLDIDNAFLNGEL 1106
+YKARLVA+GF Q G DY ET+SPV+KP TVRL+L+L ++H WPI+QLD++NAFLNG L
Sbjct: 955 KYKARLVAKGFNQQFGFDYHETFSPVIKPVTVRLILTLALTHRWPIQQLDVNNAFLNGTL 1014
Query: 1107 DIDLYMEQVPGFEQLDSKGNPLVCKLKKSLYGLKQASRAWCSKLAIVLQSFGFTISQADN 1286
+ ++YM+Q PGFE D LVCKL K++YGLKQA RAW KL L F S+ D
Sbjct: 1015 EEEVYMQQPPGFEASDKN---LVCKLHKAIYGLKQAPRAWFDKLKSTLLQLNFYASKCDP 1071
Query: 1287 SLYFKKEKGNCILILTYVDDIIITGSCQKEVERIITSLHQVFSLKDLGHLHYFLGIEVTP 1466
SL+ + N I IL YVDDIIITG+ + +++ LH +FSLKDLG L +FLGIEV
Sbjct: 1072 SLFIYSQGNNVIYILVYVDDIIITGNNSSILHTLVSQLHSIFSLKDLGDLDFFLGIEVKS 1131
Query: 1467 TAQG-VLLSQHKYISDILEQAGMKGAKGLNTPMVTHPVLSKDDGQPISNGTLYRKLVGAL 1643
G ++L+Q KYI D+L + M+G+K +++PM++ LSK + + +LYR +VGAL
Sbjct: 1132 QPDGSLILTQSKYIRDLLNRTDMEGSKPISSPMISGSKLSKVGSEDFLDASLYRSVVGAL 1191
Query: 1644 QYATISRPDISYSINKISQFMQNPLDTHWKALKRVLRYLAGTIDYGLHFK---SDSPLVL 1814
QYATI+RP+IS+S+NK+ QFM +PL HW A+KR+LRYL GT +GL + S S L +
Sbjct: 1192 QYATITRPEISFSVNKVCQFMSHPLTHHWAAVKRILRYLKGTTSWGLRLQPASSSSSLSI 1251
Query: 1815 TAFADADWGSDIDDRRSTSGYCIYLGKNLITWSSKKQNIVSRSSTEAEYRSIAAATCELI 1994
A+ DADW SD DDRRSTSG I+LG NL++W SKKQ +V+RSSTEAEYRS+A AT E+
Sbjct: 1252 HAYCDADWASDPDDRRSTSGASIFLGPNLVSWWSKKQTVVARSSTEAEYRSLALATTEVT 1311
Query: 1995 WLQSLLNELGIQMNRPSIIWTDNLGERSLSANPVYHSRTKHLELDLHFIREKVMNKAISV 2174
W+Q+LL+EL + + P II+ DNL +L+ NPV H+RTKH+ELDL F+REKV K + V
Sbjct: 1312 WIQTLLSELKVTHSTP-IIFCDNLSTVALAHNPVLHARTKHMELDLFFVREKVAAKCLQV 1370
Query: 2175 QHVPAIDQIADILTKPLSGQFFARLRNKLNV 2267
HVPAIDQ AD+LTK LS F LR+KL V
Sbjct: 1371 VHVPAIDQCADVLTKALSPTRFCELRSKLQV 1401
Score = 205 bits (521), Expect = 1e-49
Identities = 104/259 (40%), Positives = 151/259 (58%), Gaps = 3/259 (1%)
Frame = +1
Query: 3823 IFYILDQETKEVLLRGKV-NNGLYCFDLTSLNEXXXXXXXXXXXXXXNPIFLQQQTSPNV 3999
I + Q+T EVLL+G V ++GLY F N +QQQ +
Sbjct: 440 ICLVKSQDTNEVLLQGSVGSDGLYKFPALLPNPSTQS--------------VQQQQLARI 485
Query: 4000 HVLNVKNKDSINL--WHSRLGHTSFDTVQRVLKTCNISFDINEVEPVCSSCIKAKSHTLP 4173
+N ++ WHSRLGH + D ++ V + NI N C+ C KSH LP
Sbjct: 486 FSVNTAATSPVSFATWHSRLGHPNVDVMKHVSRNYNIQLVSNNKSNFCTPCCLGKSHRLP 545
Query: 4174 FSLSDTNHYNVLDLIYTDLWGPAPIRSVNGYSYYISFVDHCSRFTWLYLMKAKSDTSQVF 4353
+LS T + DL+Y+DLWGPAP+ S GY YY++FVD +RFTW+YL+K+K+ T VF
Sbjct: 546 SNLSRTIYNTPFDLVYSDLWGPAPVTSTCGYQYYVTFVDAHTRFTWIYLLKSKAQTFNVF 605
Query: 4354 IHFKTLVENQFDKKIKSIQSGGGTEFKPLSKFFNDNGIVHRISCPYTPQQNGLVERKHRH 4533
F +V+NQ+ IK++Q+ G E++ + + N+ GI HR+ CP+T QNG+ ERKHRH
Sbjct: 606 KQFHAMVKNQYHHPIKALQTDWGGEYRSFTTYLNEVGIQHRLICPHTHHQNGVAERKHRH 665
Query: 4534 IVETGLSMISNAHMPTKFW 4590
IVE GL++++ A +P +FW
Sbjct: 666 IVELGLTLMAQAELPMQFW 684
Score = 153 bits (386), Expect = 1e-33
Identities = 106/405 (26%), Positives = 182/405 (44%), Gaps = 16/405 (3%)
Frame = +3
Query: 2673 ETPATTTLPPIIYPQSQLVNVKLSESNYLVWKQQISAAIEGYGLESFINGDCSKPQQYTT 2852
+ P + + P + + S ++ KL NYL+W QQ+ I+G+ L ++ PQ++ T
Sbjct: 24 KNPPSNSHPSLTF--SHTISEKLDTKNYLLWCQQVEPVIKGHRLHHYLVNP-QIPQKFAT 80
Query: 2853 LNDKQM--VNPEYINWKRQDQXXXXXXXXXXXXXXXVTMVGLTSSRDIWEALEVSFATQS 3026
L D+ ++ Y+ W++QDQ ++G SS +W+ + F +
Sbjct: 81 LADRDAGHISESYLAWEQQDQLLLSWLQSSMSKDMLTRVIGCKSSFQLWDKIHTYFHSHM 140
Query: 3027 RAKIMQYRLQLQTLKKRDMPMREFLNKIKTCCDMLAAAGQRLTDEEQISYILTGLGNDYN 3206
AK Q R +L++ ++ + E++ +I+T D L A G ++ +E + IL GL +Y
Sbjct: 141 NAKARQLRNELRSTTLDNLSISEYVLRIQTLVDALTAIGDSVSPKEHLDIILEGLPEEYE 200
Query: 3207 SVMVSVNSRIEPYSLREVHALLLSFESRLE----------GLDIPQNQFGMDGSSPMVNY 3356
S + ++SR + ++ EV LLL ESRL+ + + ++P +
Sbjct: 201 STVSLISSRFDLLTIDEVETLLLGHESRLDKFKKKAAASINVTTAVTEPDPSATNPQAHL 260
Query: 3357 VVQ----GTGNRRGGFPQNNRGRGMNQSLVQXXXXXXXXXXXXXXXXXXXXXXXFTTPKM 3524
Q G +RRGG + GR N +
Sbjct: 261 THQNNQSGPSHRRGGRTNSRGGRFSNWA----------------------GRGRGRFAGY 298
Query: 3525 TCQICHRTNHTADKCFYRADLSYMPGNNNSSNAYSPGGTVNVAQYHSESVTKPAGNMDES 3704
CQ+CHR H A C+YR D +Y+P + + AY +++ A N +
Sbjct: 299 QCQVCHRYGHVASACYYRFDETYVPSSPLEAPAYPS---------NNQHTNPGACNNN-- 347
Query: 3705 CWFPDSGATHHVTYDFGNLNLASDYTGADKVQVGNGTGLDILHIG 3839
W+PDSGA++HVT N++ + + G D++ VGNG GL I G
Sbjct: 348 -WYPDSGASNHVTNVSQNIHQFTPFEGPDQIHVGNGQGLHINSTG 391
Score = 132 bits (333), Expect = 2e-27
Identities = 60/120 (50%), Positives = 84/120 (70%)
Frame = +3
Query: 6 AHMPTKFWDDAFSTAVFIINRLPAKVLNFQTPLEKLTGHKPRYSLLKTFGCLCFPHLRPY 185
A +P +FWD +F TAV++INRLP+ + P KL P Y L+ FGC CFPHLRPY
Sbjct: 677 AELPMQFWDHSFLTAVYLINRLPSSSIQNAVPYHKLFHQPPDYLSLRIFGCSCFPHLRPY 736
Query: 186 NKHKLEYRSQPGTFIGYSLQYKGYKVLLDNGKVLITRNVVFDETKFPFQTHTTSCLSTPS 365
NKHKL++RSQ F+GYS +KGYK L +G++ I+++VVF+ETKFP++ +S ++ S
Sbjct: 737 NKHKLQFRSQECVFLGYSTSHKGYKCLAADGRLYISKDVVFNETKFPYKDLFSSSKASDS 796
>gb|KYP64199.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1408
Score = 572 bits (1473), Expect = e-175
Identities = 296/542 (54%), Positives = 390/542 (71%), Gaps = 4/542 (0%)
Frame = +3
Query: 672 HHMVTRSKTGNLKPKSYAAVLQTPVEPTSHLQALKFPEWRKAMEQEYYALVKNGTWSLVP 851
H M+TRSK G L+P+ +L + VEP + AL P W AM+ E AL N TW+LV
Sbjct: 867 HPMITRSKNGILQPRLNPTLLLSNVEPKTVKSALTDPHWLSAMQAELTALHDNHTWTLVD 926
Query: 852 LPPDKGLINCKWIFKLKKNSDGSIARYKARLVARGFTQIAGLDYTETYSPVVKPATVRLV 1031
LPP + I CKW+F+LK+N DGSI +YKARLVA+GF Q G+D++ET+SPVVKP T+R+V
Sbjct: 927 LPPGRKSIGCKWVFRLKENPDGSINKYKARLVAKGFHQQPGVDFSETFSPVVKPVTIRIV 986
Query: 1032 LSLDISHSWPIRQLDIDNAFLNGELDIDLYMEQVPGFEQLDSKGNPLVCKLKKSLYGLKQ 1211
LSL ++ WP+RQLDI+NAFLNG L+ D+YM Q PGF + +SK LVCKL KSLYGLKQ
Sbjct: 987 LSLAVTFQWPLRQLDINNAFLNGMLEEDIYMSQPPGFIEPNSK--HLVCKLHKSLYGLKQ 1044
Query: 1212 ASRAWCSKLAIVLQSFGFTISQADNSLYFKKEKGNCILILTYVDDIIITGSCQKEVERII 1391
A RAW +L VL GF S+ D SL+ + +L YVDDII+TG+ +++ I
Sbjct: 1045 APRAWFDRLTSVLLKLGFHKSKCDPSLFIFSTPSAIVYMLIYVDDIILTGNSSSLMQQFI 1104
Query: 1392 TSLHQVFSLKDLGHLHYFLGIEVTPTAQG-VLLSQHKYISDILEQAGMKGAKGLNTPMVT 1568
LH FSLKDLG L YFLGIEV + G +LLSQHKYISD+L + M+ +KG++TPM+
Sbjct: 1105 NHLHATFSLKDLGTLDYFLGIEVKSLSNGRLLLSQHKYISDLLTKVKMEDSKGISTPMIG 1164
Query: 1569 HPVLSKDDGQPISNGTLYRKLVGALQYATISRPDISYSINKISQFMQNPLDTHWKALKRV 1748
L+K G ++ TLYR +VGALQYATI+RP+I++S+NK+SQFM +P++ HWK +KR+
Sbjct: 1165 GQQLAK-TGTLFNDPTLYRSVVGALQYATITRPEIAFSVNKVSQFMCSPMEEHWKVVKRI 1223
Query: 1749 LRYLAGTIDYGLHF---KSDSPLVLTAFADADWGSDIDDRRSTSGYCIYLGKNLITWSSK 1919
LRYL GT+ +GL F +S S LTAF DADW +D +DRRSTS CIYLG NL++W SK
Sbjct: 1224 LRYLKGTLKHGLVFTPARSSSSFNLTAFTDADWAADPNDRRSTSAACIYLGPNLVSWWSK 1283
Query: 1920 KQNIVSRSSTEAEYRSIAAATCELIWLQSLLNELGIQMNRPSIIWTDNLGERSLSANPVY 2099
KQ +V+RSSTEAEYR++A A E++W+QSLL EL I+ N P ++ DN +LS NPV
Sbjct: 1284 KQLLVARSSTEAEYRALAQAVTEVLWIQSLLQELKIRFNTPMVL-CDNQSTVALSHNPVL 1342
Query: 2100 HSRTKHLELDLHFIREKVMNKAISVQHVPAIDQIADILTKPLSGQFFARLRNKLNVASKT 2279
HSR+KH+ELD+ F+REKV++KA+ V H+P+ Q AD+LTK LS + F LR+KLNVA +
Sbjct: 1343 HSRSKHMELDIFFVREKVISKALVVSHIPSQHQYADLLTKALSPKRFLSLRSKLNVADPS 1402
Query: 2280 SL 2285
+
Sbjct: 1403 DM 1404
Score = 199 bits (506), Expect = 6e-48
Identities = 102/259 (39%), Positives = 148/259 (57%), Gaps = 5/259 (1%)
Frame = +1
Query: 3829 YILDQETKEVLLRGKVN-NGLYCFDLTSLNEXXXXXXXXXXXXXXNP---IFLQQQTSPN 3996
++ Q+ E LL G + +GLY F + P IFL ++ +
Sbjct: 435 FVKSQDLNETLLEGHLGEDGLYHFHPHLATKTSSNTNIEQNLIFSKPDPCIFLSEKCNSV 494
Query: 3997 VHVLNVKNKDSINLWHSRLGHTSFDTVQRVLKTCNISFD-INEVEPVCSSCIKAKSHTLP 4173
V ++ WH RLGH D++ R L+TCNI +N++ C SC AKSH LP
Sbjct: 495 V-------PNTYKQWHLRLGHPHHDSLTRALQTCNIRLPTVNKISDFCDSCCIAKSHRLP 547
Query: 4174 FSLSDTNHYNVLDLIYTDLWGPAPIRSVNGYSYYISFVDHCSRFTWLYLMKAKSDTSQVF 4353
S T + L+L++ D+WGPA + S GY Y+++ VD C+++ W+YL++ KSD F
Sbjct: 548 SHPSTTIYSKPLELVFLDVWGPASLESSCGYLYFLTCVDACTKYVWIYLLRRKSDVFSNF 607
Query: 4354 IHFKTLVENQFDKKIKSIQSGGGTEFKPLSKFFNDNGIVHRISCPYTPQQNGLVERKHRH 4533
+FK L E QF +KS+Q+ GG EF+ L FF GI+HR++CPYT QNG VER+HRH
Sbjct: 608 QNFKALAEKQFQLPLKSVQTDGGGEFRALISFFQQEGILHRLTCPYTHHQNGTVERRHRH 667
Query: 4534 IVETGLSMISNAHMPTKFW 4590
IVE GL+M+ ++ +P FW
Sbjct: 668 IVELGLAMLHHSTLPLNFW 686
Score = 125 bits (314), Expect = 3e-25
Identities = 59/128 (46%), Positives = 84/128 (65%), Gaps = 4/128 (3%)
Frame = +3
Query: 12 MPTKFWDDAFSTAVFIINRLPAKVLNFQTPLEKLTGHKPRYSLLKTFGCLCFPHLRPYNK 191
+P FWD AF TA ++INRLP+ + FQ+P + + P Y+ LK FGC CFP LRPYN+
Sbjct: 681 LPLNFWDHAFLTATYLINRLPSSSVGFQSPYKLIHHKDPDYTFLKVFGCSCFPLLRPYNQ 740
Query: 192 HKLEYRSQPGTFIGYSLQYKGYKVLLDNGKVLITRNVVFDETKFP----FQTHTTSCLST 359
HKL+ RS+ F+GYS +KGYK L +G++ I+++V+F+E +FP F T T+ +
Sbjct: 741 HKLQPRSEECVFLGYSPLHKGYKCLSKSGRIYISKDVIFNEGRFPYHDLFVTATSDSIPA 800
Query: 360 PSVQWFPS 383
SV PS
Sbjct: 801 TSVSTLPS 808
Score = 124 bits (311), Expect = 7e-25
Identities = 96/389 (24%), Positives = 159/389 (40%), Gaps = 27/389 (6%)
Frame = +3
Query: 2757 LVWKQQISAAIEGYGLESFINGDCSKPQQYTTLNDKQ--MVNPEYINWKRQDQXXXXXXX 2930
+ W+QQ++A I + LE F+ P ++ T D+ +VNPEY W R+D
Sbjct: 1 MTWQQQVTAVIRAHDLERFVVNP-KIPLKFLTPEDRDANLVNPEYTAWDRKDSLLVSWLL 59
Query: 2931 XXXXXXXXVTMVGLTSSRDIWEALEVSFATQSRAKIMQYRLQLQTLKKRDMPMREFLNKI 3110
+V S IW+ + F + ++ K Q RL+L+T+KK ++L +I
Sbjct: 60 ATLSESIQARVVSCRHSYQIWDLVFQHFQSLTKIKATQLRLELRTIKKGTRSCSDYLLRI 119
Query: 3111 KTCCDMLAAAGQRLTDEEQISYILTGLGNDYNSVMVSVN---SRIEPYSLREVHALLLSF 3281
T + LA+ G ++ E IL GL +Y+S++ +V SR + +S E+ ++L+
Sbjct: 120 STIVETLASIGSPISPREHAECILGGLPPEYDSLISTVTAFVSRDDHFSPAELETMILAQ 179
Query: 3282 ESRLEGLDIPQNQFGMDGSSPMVNYVVQGTGNRRGGFPQNNRGRGMNQSLVQXXXXXXXX 3461
E+RL+ Q + + + V N F +
Sbjct: 180 EARLDQAKTAAIQEPLSINLAQASSVPTNVPNVNLAFQPPLMTNSQPNPVQNFSPQPQAG 239
Query: 3462 XXXXXXXXXXXXXXXFTTPKMTCQICHRTNHTADKCFYRADLSYMPGNNNSSNAYSPGGT 3641
++ CQICH+ H A C+ LS S + YS GG+
Sbjct: 240 FNNHGGRGRGSRGGRNRGSQVQCQICHKRGHEASTCY---QLSNSLALGASWSPYSLGGS 296
Query: 3642 VNVAQYHSESVTKPAGNMD----------------------ESCWFPDSGATHHVTYDFG 3755
+ + +H T P + + W PDSGA+HH T D
Sbjct: 297 LPGSVFHPPGFTYPTAPANPPPRPRTASASAAPPAAPTLNTATAWIPDSGASHHATPDPQ 356
Query: 3756 NLNLASDYTGADKVQVGNGTGLDILHIGS 3842
L ++ +TGA+ + + NG G I +GS
Sbjct: 357 YLLQSAQFTGAEHIAMANGQGTSITSVGS 385
>gb|KYP47651.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 538
Score = 542 bits (1397), Expect = e-174
Identities = 281/538 (52%), Positives = 368/538 (68%), Gaps = 4/538 (0%)
Frame = +3
Query: 678 MVTRSKTGNLKPKSYAAVLQTPVEPTSHLQALKFPEWRKAMEQEYYALVKNGTWSLVPLP 857
M TR+K G +KP+ +L T EP S QAL W AM+QEY AL+ NGTW+LV LP
Sbjct: 1 MTTRAKAGIVKPRLQPTLLLTHTEPKSTKQALANDTWLAAMKQEYNALLNNGTWTLVSLP 60
Query: 858 PDKGLINCKWIFKLKKNSDGSIARYKARLVARGFTQIAGLDYTETYSPVVKPATVRLVLS 1037
P+K I CKW+F++K+N DG++ +YKARLVA+GF Q G DY ET+SPVVKP T+RL+L+
Sbjct: 61 PNKTAIGCKWVFRIKENLDGTVNKYKARLVAKGFHQQFGSDYNETFSPVVKPVTIRLILT 120
Query: 1038 LDISHSWPIRQLDIDNAFLNGELDIDLYMEQVPGFEQLDSKGNPLVCKLKKSLYGLKQAS 1217
L ++H W I+QLD++N FLNG L+ ++YM Q PGFE D LV K+ K +YGLKQA
Sbjct: 121 LALTHHWSIQQLDVNNTFLNGNLEEEVYMSQPPGFESSD---KALVYKIHKEIYGLKQAP 177
Query: 1218 RAWCSKLAIVLQSFGFTISQADNSLYFKKEKGNCILILTYVDDIIITGSCQKEVERIITS 1397
RAW KL L F IS+ + SL+ + I IL YVDDIIITG+ + II
Sbjct: 178 RAWFDKLKATLFQLNFQISKCNPSLFVYSHGNHVIYILVYVDDIIITGNNSSILRSIIAQ 237
Query: 1398 LHQVFSLKDLGHLHYFLGIEVTPTAQG-VLLSQHKYISDILEQAGMKGAKGLNTPMVTHP 1574
L+ FSLKDLG L +FLGIE G L+Q KYI D+L + M+ + +++PMV+
Sbjct: 238 LNSAFSLKDLGRLDFFLGIEAKSNPDGSPTLTQSKYIRDLLNRTNMENSNPISSPMVSGC 297
Query: 1575 VLSKDDGQPISNGTLYRKLVGALQYATISRPDISYSINKISQFMQNPLDTHWKALKRVLR 1754
LSK + + TLYR +VGALQYATI+RP IS+S+NK+ QFM NPL+ HW A+KR+LR
Sbjct: 298 KLSKTGLKKFIDVTLYRSVVGALQYATITRPKISFSVNKVCQFMSNPLEQHWSAIKRILR 357
Query: 1755 YLAGTIDYGLHFK---SDSPLVLTAFADADWGSDIDDRRSTSGYCIYLGKNLITWSSKKQ 1925
YL GT+ GLH + S+SPL + A+ DADW SD DD RSTSG I++G NLI+W SKKQ
Sbjct: 358 YLKGTMFPGLHLQPAPSNSPLSICAYRDADWASDPDDGRSTSGASIFVGPNLISWWSKKQ 417
Query: 1926 NIVSRSSTEAEYRSIAAATCELIWLQSLLNELGIQMNRPSIIWTDNLGERSLSANPVYHS 2105
+V+RSS EAEYRS+A AT E +W+Q+LL+EL + + P +++ DN+ SL+ N V H+
Sbjct: 418 TVVARSSAEAEYRSLALATAEALWIQTLLSELHVSHHTP-VVYCDNMSTVSLAHNHVLHA 476
Query: 2106 RTKHLELDLHFIREKVMNKAISVQHVPAIDQIADILTKPLSGQFFARLRNKLNVASKT 2279
RTKH+E+DL F+REKV ++ V HVPAIDQ ADILTK LS F LR KL + +
Sbjct: 477 RTKHMEMDLFFVREKVSANSLHVVHVPAIDQYADILTKALSPSRFCELRTKLKLVDSS 534
>gb|KYP46114.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 539
Score = 540 bits (1391), Expect = e-173
Identities = 271/536 (50%), Positives = 377/536 (70%), Gaps = 4/536 (0%)
Frame = +3
Query: 678 MVTRSKTGNLKPKSYAAVLQTPVEPTSHLQALKFPEWRKAMEQEYYALVKNGTWSLVPLP 857
M TRSK+G P+ + ++ EP + QAL P W AM+QEY AL+ N TW LV LP
Sbjct: 1 MQTRSKSGFHNPRIHPSLFLAHSEPKTVKQALADPNWFSAMQQEYNALMLNHTWDLVSLP 60
Query: 858 PDKGLINCKWIFKLKKNSDGSIARYKARLVARGFTQIAGLDYTETYSPVVKPATVRLVLS 1037
D+ + CKW+F++K+N+DGSI + KARLVA+GF Q+ G D+ ET+SPV+KP T+R++L+
Sbjct: 61 SDRKAVGCKWVFRVKENADGSIDKLKARLVAKGFHQVHGFDFHETFSPVIKPITIRIILT 120
Query: 1038 LDISHSWPIRQLDIDNAFLNGELDIDLYMEQVPGFEQLDSKGNPLVCKLKKSLYGLKQAS 1217
L ++++W + QLD++NAFLNG L+ +YM Q PGFE D LVCKL K+LYGLKQA
Sbjct: 121 LALTNNWNLFQLDVNNAFLNGTLEETIYMVQPPGFEAGDKS---LVCKLNKALYGLKQAP 177
Query: 1218 RAWCSKLAIVLQSFGFTISQADNSLYFKKEKGNCILILTYVDDIIITGSCQKEVERIITS 1397
R W +KL + L FGF S+ D SL+ + + + I IL YVDDIIITGS +++I
Sbjct: 178 RQWFNKLKLTLTRFGFQASKCDPSLFQYQHQTHTIFILVYVDDIIITGSSSLLIQQITNQ 237
Query: 1398 LHQVFSLKDLGHLHYFLGIEVTPTA-QGVLLSQHKYISDILEQAGMKGAKGLNTPMVTHP 1574
L +FSLK LG L YFLGIEV + ++L+Q KYI D+L + + A G +PM ++
Sbjct: 238 LDSIFSLKQLGSLDYFLGIEVKHLPDKSLVLTQSKYIRDLLFKTNLAEAHGAPSPMFSNC 297
Query: 1575 VLSKDDGQPISNGTLYRKLVGALQYATISRPDISYSINKISQFMQNPLDTHWKALKRVLR 1754
LS+ + T +R +VGALQYAT++RP+IS+++NK+ QFM PLD+HW A+KR+L+
Sbjct: 298 KLSRSGNDFFHDPTFFRSVVGALQYATLTRPEISFAVNKVCQFMATPLDSHWVAVKRILK 357
Query: 1755 YLAGTIDYGLHFKS---DSPLVLTAFADADWGSDIDDRRSTSGYCIYLGKNLITWSSKKQ 1925
YL GT+ YGLH + + P+ LTAF DADW SDIDDRRSTSG I+ G NLI+W S+KQ
Sbjct: 358 YLKGTLSYGLHMQPAAVNGPISLTAFCDADWASDIDDRRSTSGSAIFFGPNLISWWSRKQ 417
Query: 1926 NIVSRSSTEAEYRSIAAATCELIWLQSLLNELGIQMNRPSIIWTDNLGERSLSANPVYHS 2105
+++RSSTEAEYRSIA A+ EL W+Q+LL EL + + P+++ DN +++ NPV+HS
Sbjct: 418 RVIARSSTEAEYRSIAQASAELTWIQALLQELKVPFSTPTLL-CDNQSAVAIAHNPVFHS 476
Query: 2106 RTKHLELDLHFIREKVMNKAISVQHVPAIDQIADILTKPLSGQFFARLRNKLNVAS 2273
+TKH+E+D+ F+R+KV++K + V H+PA+DQ AD+LTKPLS F L +KL V S
Sbjct: 477 KTKHMEIDVFFVRDKVLSKQLLVYHIPALDQWADLLTKPLSAARFEVLWDKLKVQS 532
>gb|KYP75940.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1403
Score = 568 bits (1463), Expect = e-173
Identities = 286/547 (52%), Positives = 382/547 (69%), Gaps = 2/547 (0%)
Frame = +3
Query: 672 HHMVTRSKTGNLKPKSYAAVLQTPVEPTSHLQALKFPEWRKAMEQEYYALVKNGTWSLVP 851
H M+TR+K G KPK++ A EP S QAL W++AM+ EY AL+KN TW LV
Sbjct: 862 HPMITRAKIGVFKPKAFLATS----EPISVAQALDNKHWKQAMQDEYNALLKNHTWDLVS 917
Query: 852 LPPDKGLINCKWIFKLKKNSDGSIARYKARLVARGFTQIAGLDYTETYSPVVKPATVRLV 1031
LPP + I CKWIFK K DGSI R+KARLVARGF+Q GLDYT+T+SPVVKP ++R+V
Sbjct: 918 LPPGRTAITCKWIFKNKYKQDGSILRHKARLVARGFSQQQGLDYTDTFSPVVKPVSIRIV 977
Query: 1032 LSLDISHSWPIRQLDIDNAFLNGELDIDLYMEQVPGFEQLDSKGNP-LVCKLKKSLYGLK 1208
L+L +S WPI Q+D+DNAFLNG+L D+YM Q GF G P VCKL+K+LYGLK
Sbjct: 978 LALAVSKGWPIHQIDVDNAFLNGDLKEDIYMLQPQGFHN----GAPNTVCKLRKALYGLK 1033
Query: 1209 QASRAWCSKLAIVLQSFGFTISQADNSLYFKKEKGNCILILTYVDDIIITGSCQKEVERI 1388
QA RAW KL ++L GF +++D+SL+ K I IL YVDDIIIT + ++ +
Sbjct: 1034 QAPRAWFQKLTLILLQLGFKQARSDSSLFTFTSKVTSIYILIYVDDIIITSNSPAAIQTL 1093
Query: 1389 ITSLHQVFSLKDLGHLHYFLGIEVTPT-AQGVLLSQHKYISDILEQAGMKGAKGLNTPMV 1565
I++LH+ F LKDLG LHYFLGIEV A G+ LSQ KY+ DIL++ M AK + TPM
Sbjct: 1094 ISTLHRFFPLKDLGSLHYFLGIEVNSDGAGGIHLSQTKYLKDILDKLNMSNAKPVKTPMA 1153
Query: 1566 THPVLSKDDGQPISNGTLYRKLVGALQYATISRPDISYSINKISQFMQNPLDTHWKALKR 1745
L+ D + +LYR ++GALQY TI+RPDI+Y++NK+ QFM +PL++HWKA+KR
Sbjct: 1154 PSLKLTNDGTAVCPDPSLYRSVIGALQYLTITRPDIAYTVNKLCQFMHHPLESHWKAVKR 1213
Query: 1746 VLRYLAGTIDYGLHFKSDSPLVLTAFADADWGSDIDDRRSTSGYCIYLGKNLITWSSKKQ 1925
+LRYL GT+ +GLH+K + + A+ D+DW SD +D RSTSG C+YLG N+++W +KKQ
Sbjct: 1214 LLRYLQGTLQHGLHYKKSTDTGIHAYCDSDWASDHEDMRSTSGNCVYLGPNIVSWMAKKQ 1273
Query: 1926 NIVSRSSTEAEYRSIAAATCELIWLQSLLNELGIQMNRPSIIWTDNLGERSLSANPVYHS 2105
+VSRSSTEAE+RS+A+ E+ ++Q+LL+EL +P +IW DN G LSANPV H+
Sbjct: 1274 RVVSRSSTEAEFRSLASLVTEVQYIQNLLSELHNSSTQPPLIWCDNQGAVLLSANPVLHT 1333
Query: 2106 RTKHLELDLHFIREKVMNKAISVQHVPAIDQIADILTKPLSGQFFARLRNKLNVASKTSL 2285
+TKH ELDL F+RE+V I V+H+PA Q+AD+LTK S F LR+KL V +++L
Sbjct: 1334 KTKHFELDLWFVRERVARGQIQVKHIPARFQVADLLTKAPSSSIFLALRHKLTVDKQSTL 1393
Query: 2286 EMRGHDK 2306
++G K
Sbjct: 1394 SLKGDKK 1400
Score = 232 bits (591), Expect = 5e-58
Identities = 115/254 (45%), Positives = 156/254 (61%), Gaps = 1/254 (0%)
Frame = +1
Query: 3832 ILDQETKEVLLRGKVNNGLYCFDLTSLNEXXXXXXXXXXXXXXNPIFLQQQTSPNVHVLN 4011
+ Q++KE LLRG + NGLY FD + + Q+T
Sbjct: 424 VKSQDSKETLLRGNLKNGLYVFDEVQILKPDVYEHTVDSVPTNRTTLYVQRT-------- 475
Query: 4012 VKNKDSINLWHSRLGHTSFDTVQRVLKTCNISFDINEVEP-VCSSCIKAKSHTLPFSLSD 4188
+ S ++WH+RL H S VQ V+KTCN+ IN + VC SC KSHTLPFS S
Sbjct: 476 ---RKSYDVWHNRLAHASRKIVQAVMKTCNVPMPINHQDSIVCKSCCIGKSHTLPFSDSY 532
Query: 4189 TNHYNVLDLIYTDLWGPAPIRSVNGYSYYISFVDHCSRFTWLYLMKAKSDTSQVFIHFKT 4368
T + + L+L+Y+D+WGP+ S G+ YY+ F D S++TW+Y M KS+T+ FIHFK+
Sbjct: 533 TVYNSPLELVYSDVWGPSHYASREGFRYYVHFTDAFSKYTWIYFMHNKSETAHHFIHFKS 592
Query: 4369 LVENQFDKKIKSIQSGGGTEFKPLSKFFNDNGIVHRISCPYTPQQNGLVERKHRHIVETG 4548
+VENQF KIK QS GG EF L+K FN+NGI HR+SCP++ QQNG ERKHRHI E G
Sbjct: 593 MVENQFGHKIKMFQSDGGKEFTCLTKLFNENGITHRLSCPHSHQQNGTAERKHRHITEVG 652
Query: 4549 LSMISNAHMPTKFW 4590
L+++S++ +P FW
Sbjct: 653 LTLLSSSGLPHIFW 666
Score = 193 bits (491), Expect = 4e-46
Identities = 124/379 (32%), Positives = 189/379 (49%), Gaps = 4/379 (1%)
Frame = +3
Query: 2718 SQLVNVKLSESNYLVWKQQISAAIEGYGLESFINGDCSKPQQYTTLNDKQ--MVNPEYIN 2891
S ++ KLSE N+L W+QQ + I GY L+ I G P Q+ T DK +++PEY +
Sbjct: 17 SNPISSKLSEDNFLTWRQQAESTIRGYRLKKHILGAMHVPAQHKTDEDKAKGVLSPEYED 76
Query: 2892 WKRQDQXXXXXXXXXXXXXXXVTMVGLTSSRDIWEALEVSFATQSRAKIMQYRLQLQTLK 3071
+ +QD V MVG IW LE+ FA+Q++A++ Q ++QL+ +K
Sbjct: 77 YDQQDNLLKSWLLESMEPQFKVRMVGYEWCHQIWNNLEIYFASQTKARVKQLKIQLRGIK 136
Query: 3072 KRDMPMREFLNKIKTCCDMLAAAGQRLTDEEQISYILTGLGNDYNSVMVSVNSRIEPYSL 3251
K + ++L +IK + LAA G L E I I GL +Y+ + SV +R E YS+
Sbjct: 137 KTTA-INQYLLEIKKIVNNLAAIGSPLNTAEHIDAIFDGLSEEYDPFITSVLTRTEEYSV 195
Query: 3252 REVHALLLSFESRLEGLDIPQNQFGMDGSSPMVNYVVQGTGNRRGGFPQNNRGRGMNQSL 3431
++ +LL++ E RLE + S P+ + QG+ N R F N+GRG N +
Sbjct: 196 EQIESLLMAQEERLE-------KHKASESVPLQANLAQGSFNSRKQF--TNQGRGSNNNG 246
Query: 3432 VQXXXXXXXXXXXXXXXXXXXXXXXFTTPKMTCQICHRTNHTADKCFYRADLSYM-PGNN 3608
K CQ+C + H A C++R D Y P N
Sbjct: 247 THGRGPHRGRGRGRSAQHFGRGN------KQPCQVCGKIGHIAFHCWHRYDQQYTEPNLN 300
Query: 3609 NSSNAYSPGGTVNVAQYHSESVTKPAGNM-DESCWFPDSGATHHVTYDFGNLNLASDYTG 3785
+++N Y+PG Q +++ + NM + W+PDSGAT+H+T D NL +DYTG
Sbjct: 301 HNTNVYNPGN-----QQQMQAMIAGSQNMVYDDQWYPDSGATNHLTSDLNNLGSKTDYTG 355
Query: 3786 ADKVQVGNGTGLDILHIGS 3842
DK+ +GNG + I H G+
Sbjct: 356 QDKIHMGNGQAIGINHTGT 374
Score = 139 bits (349), Expect = 2e-29
Identities = 67/135 (49%), Positives = 88/135 (65%), Gaps = 11/135 (8%)
Frame = +3
Query: 12 MPTKFWDDAFSTAVFIINRLPAKVLNFQTPLEKLTGHKPRYSLLKTFGCLCFPHLRPYNK 191
+P FW DAFSTA+ +INRLP +L ++P E L P Y LL+ FGC C+PHLRP+N
Sbjct: 661 LPHIFWSDAFSTAIHVINRLPTPILGHKSPYEVLFNKIPDYLLLRPFGCACYPHLRPFNS 720
Query: 192 HKLEYRSQPGTFIGYSLQYKGYKVLLDNGKVLITRNVVFDETKFP----FQTHTTSCLST 359
HK+++RS FIGYS+Q+KGYK NGK++I+RNVVFDE FP F T+ + LS+
Sbjct: 721 HKMDFRSSQCVFIGYSMQHKGYKCFTTNGKIIISRNVVFDEDTFPGPSYFNTNNVAGLSS 780
Query: 360 -------PSVQWFPS 383
PS+ PS
Sbjct: 781 SHSPQPVPSIHVLPS 795
>gb|KYP44480.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 552
Score = 540 bits (1391), Expect = e-173
Identities = 276/547 (50%), Positives = 366/547 (66%), Gaps = 8/547 (1%)
Frame = +3
Query: 678 MVTRSKTGNLKPKSYAAVLQTPV-------EPTSHLQALKFPEWRKAMEQEYYALVKNGT 836
M+TR+K G KPK+Y V TP EP S +A+ P W+K M +EY AL+KN T
Sbjct: 1 MITRAKAGIHKPKAYNIVTTTPKLDLNPFHEPRSIKEAMAIPHWKKTMLEEYKALMKNNT 60
Query: 837 WSLVPLPPDKGLINCKWIFKLKKNSDGSIARYKARLVARGFTQIAGLDYTETYSPVVKPA 1016
W L LP + LI C+W+FK+K NSDGSI R+KARLVA+GF Q G D++ET+SPVVKPA
Sbjct: 61 WILTTLPAGRNLIGCRWVFKVKTNSDGSINRHKARLVAKGFHQRDGFDFSETFSPVVKPA 120
Query: 1017 TVRLVLSLDISHSWPIRQLDIDNAFLNGELDIDLYMEQVPGFEQLDSKGNPLVCKLKKSL 1196
T+R++LS+ +S SW +RQ+DI NAFLNG+L D+YM Q PGF Q D LVCKL+KSL
Sbjct: 121 TIRIILSIVVSRSWDMRQIDIANAFLNGDLQEDIYMAQPPGFIQTDKS---LVCKLQKSL 177
Query: 1197 YGLKQASRAWCSKLAIVLQSFGFTISQADNSLYFKKEKGNCILILTYVDDIIITGSCQKE 1376
YGLKQA RAW +L + L GF ++ D+SL+ + K + IL YVDDIII GS
Sbjct: 178 YGLKQAPRAWFERLHLSLSRIGFYYAKMDSSLFIRFHKDHITFILVYVDDIIICGSSTSA 237
Query: 1377 VERIITSLHQVFSLKDLGHLHYFLGIEVTPTAQGVL-LSQHKYISDILEQAGMKGAKGLN 1553
+ ++ L F ++DLG +YFLGI+V L L+Q KYI+D+L + M AK +
Sbjct: 238 ISSVVEQLQSEFPVRDLGFPNYFLGIQVDQLPNRTLMLTQTKYINDLLNRTNMHMAKPIK 297
Query: 1554 TPMVTHPVLSKDDGQPISNGTLYRKLVGALQYATISRPDISYSINKISQFMQNPLDTHWK 1733
TPMV L +G T YR +VG+LQY TI+RP+I++S+NK+ Q+MQ P + HW
Sbjct: 298 TPMVAGLKLQPLEGTAHYEITQYRSIVGSLQYITITRPEIAFSVNKVCQYMQAPRNPHWM 357
Query: 1734 ALKRVLRYLAGTIDYGLHFKSDSPLVLTAFADADWGSDIDDRRSTSGYCIYLGKNLITWS 1913
A+KR+LRYL GT++ LH + F DADWGS+++DR+ST+GY IYLG N I+WS
Sbjct: 358 AVKRILRYLCGTLNTSLHLIKSPDFSIKGFCDADWGSNLEDRKSTTGYVIYLGANPISWS 417
Query: 1914 SKKQNIVSRSSTEAEYRSIAAATCELIWLQSLLNELGIQMNRPSIIWTDNLGERSLSANP 2093
SKKQ VSRS+TEAEYRSIAA T E+ WL++LL EL I II+ DNL LS NP
Sbjct: 418 SKKQQAVSRSTTEAEYRSIAAITAEMTWLKNLLYELHIPTTSKPIIYCDNLSAVLLSTNP 477
Query: 2094 VYHSRTKHLELDLHFIREKVMNKAISVQHVPAIDQIADILTKPLSGQFFARLRNKLNVAS 2273
+ H++TKH E+DL+F+R++V K ++VQH+P+ +Q DILTK LS F +NKL V
Sbjct: 478 ILHTKTKHFEIDLYFVRDQVQKKQLAVQHIPSSEQTTDILTKALSFPAFNHCKNKLRVRL 537
Query: 2274 KTSLEMR 2294
+L +R
Sbjct: 538 HPTLSLR 544
>gb|KYP50571.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 553
Score = 538 bits (1386), Expect = e-172
Identities = 277/555 (49%), Positives = 375/555 (67%), Gaps = 11/555 (1%)
Frame = +3
Query: 678 MVTRSKTGNLKPKSYAAVLQTPV------EPTSHLQALKFPEWRKAMEQEYYALVKNGTW 839
M+TRSK G KPK+Y T EP + +AL P W++AM+QEY AL+ N TW
Sbjct: 1 MITRSKHGIFKPKTYEVTTPTQKLHDPFKEPKTIKEALAIPNWKQAMDQEYNALIHNKTW 60
Query: 840 SLVPLPPDKGLINCKWIFKLKKNSDGSIARYKARLVARGFTQIAGLDYTETYSPVVKPAT 1019
L LP L+ CKWIFK+K N+DG+I R+KARL+A+GF Q +GLD+TET+ PVVKP T
Sbjct: 61 VLTHLPVGANLVGCKWIFKVKTNADGTINRHKARLMAKGFNQQSGLDFTETFIPVVKPIT 120
Query: 1020 VRLVLSLDISHSWPIRQLDIDNAFLNGELDIDLYMEQVPGFEQLDSKGNPLVCKLKKSLY 1199
+R VL++ +S +W +RQLDI NAFLNG+L +YM Q PGF D +VCKL+K LY
Sbjct: 121 IRTVLTIALSLNWSLRQLDIANAFLNGDLQETIYMAQPPGFTNGDKN---MVCKLQKFLY 177
Query: 1200 GLKQASRAWCSKLAIVLQSFGFTISQADNSLYFKKEKGNCILILTYVDDIIITGSCQKEV 1379
GLKQA RAW KL L GF +++D SL+F+ N ILIL YVDD+II+GS Q E+
Sbjct: 178 GLKQAPRAWFQKLHDTLSVLGFNYAKSDCSLFFRITTSNIILILVYVDDLIISGSSQTEI 237
Query: 1380 ERIITSLHQVFSLKDLGHLHYFLGIEVTPTAQGVL-LSQHKYISDILEQAGMKGAKGLNT 1556
+ ++T L F +DLG +YF GI+VT + L L+Q KYI+D+L++A M AK + T
Sbjct: 238 DSVVTHLQTRFPARDLGFPNYFPGIQVTQMSNNSLHLTQTKYINDLLKRANMVTAKPVTT 297
Query: 1557 PMVTHPVLS----KDDGQPISNGTLYRKLVGALQYATISRPDISYSINKISQFMQNPLDT 1724
M V+S D P N +LYR +VG+LQY I+RP+IS+S+NK+ QFMQ P T
Sbjct: 298 RMFQFRVVSLKLTNSDKDPCENPSLYRSIVGSLQYLIITRPEISFSVNKVCQFMQEPKAT 357
Query: 1725 HWKALKRVLRYLAGTIDYGLHFKSDSPLVLTAFADADWGSDIDDRRSTSGYCIYLGKNLI 1904
HW+A+KR+LRYL GT G+ + L + AF DADWG D+DDR+ST+G+C++LG N I
Sbjct: 358 HWQAVKRILRYLCGTATTGIVLSKSNNLHIFAFCDADWGVDVDDRKSTTGFCVFLGCNPI 417
Query: 1905 TWSSKKQNIVSRSSTEAEYRSIAAATCELIWLQSLLNELGIQMNRPSIIWTDNLGERSLS 2084
+WSS+KQ VSRS+ EAEYRS+AA T E+ W+++LL+EL + R I+ DNL L+
Sbjct: 418 SWSSRKQQAVSRSTIEAEYRSLAAVTAEITWMKNLLHELQVPNIRTPKIYCDNLSAVLLA 477
Query: 2085 ANPVYHSRTKHLELDLHFIREKVMNKAISVQHVPAIDQIADILTKPLSGQFFARLRNKLN 2264
ANP+ HS+TKH ELDL+F+R+KV + ISVQH+P+++Q ADI TKPL+ F+ KL
Sbjct: 478 ANPILHSKTKHFELDLYFVRDKVQKREISVQHIPSLEQTADIFTKPLTYPSFSSCMYKLR 537
Query: 2265 VASKTSLEMRGHDKG 2309
+ + + +R KG
Sbjct: 538 LHFCSPISLRESVKG 552
>emb|CAN78451.1| hypothetical protein VITISV_005945 [Vitis vinifera]
Length = 773
Score = 543 bits (1399), Expect = e-171
Identities = 274/545 (50%), Positives = 374/545 (68%)
Frame = +3
Query: 669 THHMVTRSKTGNLKPKSYAAVLQTPVEPTSHLQALKFPEWRKAMEQEYYALVKNGTWSLV 848
TH MVTR+K+G K +S+ ++Q EP ++ QA K W +AM EY AL++N TWSLV
Sbjct: 181 THPMVTRAKSGIHKKRSF--IVQHTTEPRTYSQAFKNDSWVQAMNSEYQALLRNNTWSLV 238
Query: 849 PLPPDKGLINCKWIFKLKKNSDGSIARYKARLVARGFTQIAGLDYTETYSPVVKPATVRL 1028
P P ++ C+WI+KLK DGSI R+KARLVA+GFTQ G+DY +T+SPVVKP T+RL
Sbjct: 239 PPPSSAHIVGCRWIYKLKYRPDGSIDRHKARLVAQGFTQTPGIDYFDTFSPVVKPCTIRL 298
Query: 1029 VLSLDISHSWPIRQLDIDNAFLNGELDIDLYMEQVPGFEQLDSKGNPLVCKLKKSLYGLK 1208
+L+L +S W +RQLD++N FLNG+L+ +++M Q GF ++ VCKL K+LYGLK
Sbjct: 299 ILALAVSFQWSVRQLDVENGFLNGDLEEEVFMTQPQGF--VNPTYPTYVCKLHKALYGLK 356
Query: 1209 QASRAWCSKLAIVLQSFGFTISQADNSLYFKKEKGNCILILTYVDDIIITGSCQKEVERI 1388
QA RAW KL I L +GF S+AD SL+ + +++L YVDDI++TGS V
Sbjct: 357 QAPRAWFQKLRIALLDYGFQSSRADTSLFIFHTATDILILLVYVDDILVTGSNPTLVSHF 416
Query: 1389 ITSLHQVFSLKDLGHLHYFLGIEVTPTAQGVLLSQHKYISDILEQAGMKGAKGLNTPMVT 1568
I+ L F+L+DLG L YFLGI+ + L+QHKYI+D+L + M+ +K TP
Sbjct: 417 ISYLRTKFALRDLGPLSYFLGIQAQQLGSVLHLNQHKYIADLLNRTQMETSKPAPTPGRL 476
Query: 1569 HPVLSKDDGQPISNGTLYRKLVGALQYATISRPDISYSINKISQFMQNPLDTHWKALKRV 1748
LS+ DG +S+ + YR+ VGALQY T++RPDI++++NK QFM P D HW A+KR+
Sbjct: 477 GRTLSQSDGVSLSDPSEYRRTVGALQYVTLTRPDIAFAVNKACQFMAKPSDVHWMAVKRI 536
Query: 1749 LRYLAGTIDYGLHFKSDSPLVLTAFADADWGSDIDDRRSTSGYCIYLGKNLITWSSKKQN 1928
LRYL GTI GLHF+ + + ++DADW S DDRRSTSGYC++LG NLI+WSS KQ
Sbjct: 537 LRYLKGTIHLGLHFQPAASMEXQGYSDADWASCPDDRRSTSGYCVFLGSNLISWSSSKQR 596
Query: 1929 IVSRSSTEAEYRSIAAATCELIWLQSLLNELGIQMNRPSIIWTDNLGERSLSANPVYHSR 2108
+VS+SS E+EYR + + T EL+W+QSLL EL + + P I+W DN L+ANPV+HSR
Sbjct: 597 LVSKSSAESEYRGLVSLTAELVWIQSLLQELCLPTS-PPILWCDNQSAAHLAANPVFHSR 655
Query: 2109 TKHLELDLHFIREKVMNKAISVQHVPAIDQIADILTKPLSGQFFARLRNKLNVASKTSLE 2288
+KH+ELDLHFIREKV+ + + + +VP+ DQ+ADI TK L F LR+KL V + L
Sbjct: 656 SKHIELDLHFIREKVLRQELQICYVPSGDQLADIFTKHLPITQFCNLRSKLTV-TYPPLS 714
Query: 2289 MRGHD 2303
+RG D
Sbjct: 715 LRGDD 719
Score = 122 bits (307), Expect = 1e-24
Identities = 63/126 (50%), Positives = 86/126 (68%), Gaps = 1/126 (0%)
Frame = +3
Query: 12 MPTKFWDDAFSTAVFIINRLPAKVLNFQTPLEKLTGHKPRYSLLKTFGCLCFPHLRPYNK 191
+P+K+W AF TAV++IN LPAK+L+FQ+P + L P Y L+ FGCLCFP LRPY +
Sbjct: 6 LPSKYWTYAFQTAVYLINLLPAKLLHFQSPTQTLFHKLPNYHHLRVFGCLCFPSLRPYTQ 65
Query: 192 HKLEYRSQPGTFIGYSLQYKGYKVL-LDNGKVLITRNVVFDETKFPFQTHTTSCLSTPSV 368
HKL YRS F+GY+ +KGY L + ++ I+RNV+F E+ FPFQ ++S S+PS
Sbjct: 66 HKLCYRSTACVFLGYAPAHKGYLCLDVSTNRIYISRNVIFHESSFPFQ--SSSPPSSPSP 123
Query: 369 QWFPSS 386
PSS
Sbjct: 124 H-LPSS 128
>gb|KHN36156.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Glycine soja]
Length = 1417
Score = 560 bits (1442), Expect = e-170
Identities = 283/536 (52%), Positives = 378/536 (70%), Gaps = 4/536 (0%)
Frame = +3
Query: 672 HHMVTRSKTGNLKPKSYAAVLQTPVEPTSHLQALKFPEWRKAMEQEYYALVKNGTWSLVP 851
H M+TR+KTGNLKPK + A L EP S AL P W +AM+ EY AL+ N TW+LVP
Sbjct: 890 HPMITRAKTGNLKPKVFVAAL----EPKSVKSALNDPAWLQAMQAEYKALMDNQTWTLVP 945
Query: 852 LPPDKGLINCKWIFKLKKNSDGSIARYKARLVARGFTQIAGLDYTETYSPVVKPATVRLV 1031
LP + I CKWIF++K+N DG++ ++KARLVA+GF Q AG D+TET+SPV+KP T+R++
Sbjct: 946 LPQHRKAIGCKWIFRVKENPDGTVNKFKARLVAKGFLQTAGFDFTETFSPVIKPITIRII 1005
Query: 1032 LSLDISHSWPIRQLDIDNAFLNGELDIDLYMEQVPGFEQLDSKGNPLVCKLKKSLYGLKQ 1211
L+L ++ W ++Q+D++NAFLNG L ++YM Q GFE D LVCKL KSLYGLKQ
Sbjct: 1006 LTLAVTFKWSVQQIDVNNAFLNGILQEEVYMTQPAGFEASDKS---LVCKLHKSLYGLKQ 1062
Query: 1212 ASRAWCSKLAIVLQSFGFTISQADNSLYFKKEKGNCILILTYVDDIIITGSCQKEVERII 1391
A RAW +L L GF S+ D SL + G C +L YVDDI+ITGS + +I
Sbjct: 1063 APRAWYDRLTQALLQLGFVKSKCDPSLLIHTQNGACTYVLIYVDDILITGSAPHLISDLI 1122
Query: 1392 TSLHQVFSLKDLGHLHYFLGIEVTPTAQG-VLLSQHKYISDILEQAGMKGAKGLNTPMVT 1568
L+ F+LK LG + YFLGIEV G +LL+Q KYI D+L +A M+ + + +PMV+
Sbjct: 1123 HKLNMKFALKQLGQIDYFLGIEVHHLPSGALLLNQTKYIRDLLCKAHMEDSAPIGSPMVS 1182
Query: 1569 HPVLSKDDGQPISNGTLYRKLVGALQYATISRPDISYSINKISQFMQNPLDTHWKALKRV 1748
LSK +++ TLYR +VGALQYAT++RPDI++S+NK+ QFM +PL++HWKA+KR+
Sbjct: 1183 SCRLSKYGSDTMTDPTLYRSIVGALQYATLTRPDIAFSVNKVCQFMAHPLESHWKAVKRI 1242
Query: 1749 LRYLAGTIDYGLHF---KSDSPLVLTAFADADWGSDIDDRRSTSGYCIYLGKNLITWSSK 1919
LRYL GT+ +GL + P L A++DADW +D DDRRSTSG CIY G NLI+W SK
Sbjct: 1243 LRYLNGTLSHGLLLTPSPTSPPFSLRAYSDADWATDQDDRRSTSGSCIYFGPNLISWGSK 1302
Query: 1920 KQNIVSRSSTEAEYRSIAAATCELIWLQSLLNELGIQMNRPSIIWTDNLGERSLSANPVY 2099
KQ +V+RSSTEAEYRS+A T +L+W+QSLL EL + P+++ DNL SLS NP+
Sbjct: 1303 KQQLVARSSTEAEYRSMANTTADLLWIQSLLRELQVPFLTPTLL-CDNLSAVSLSHNPIL 1361
Query: 2100 HSRTKHLELDLHFIREKVMNKAISVQHVPAIDQIADILTKPLSGQFFARLRNKLNV 2267
HS+TKH+ELD+HF+REKV++K +++ HVPA DQ+AD LTKPLS +R KL V
Sbjct: 1362 HSKTKHIELDIHFVREKVLSKQLNILHVPAQDQLADPLTKPLSPSQHTAIRTKLKV 1417
Score = 207 bits (527), Expect = 2e-50
Identities = 109/259 (42%), Positives = 150/259 (57%), Gaps = 5/259 (1%)
Frame = +1
Query: 3829 YILDQETKEVLLRGKVN-NGLYCFD----LTSLNEXXXXXXXXXXXXXXNPIFLQQQTSP 3993
++ Q++K+VLL G V +GLY F LT+ +F +
Sbjct: 425 FVKYQDSKQVLLEGTVGADGLYQFKPFKFLTNSGAASNSDSSSMSSSSQFSVF-NNPVNC 483
Query: 3994 NVHVLNVKNKDSINLWHSRLGHTSFDTVQRVLKTCNISFDINEVEPVCSSCIKAKSHTLP 4173
N V ++N + +WH RLGH V+ +L CNI F C+ C KSH L
Sbjct: 484 NNTVSVMQNGNVFQMWHLRLGHAHTSAVKNILNLCNIPFSNKTATLPCTFCCMGKSHRLH 543
Query: 4174 FSLSDTNHYNVLDLIYTDLWGPAPIRSVNGYSYYISFVDHCSRFTWLYLMKAKSDTSQVF 4353
LS+T + ++I+ DLWGPAP S GYSYYI+FVD ++FTW+Y +KAKSD + F
Sbjct: 544 SPLSNTVYTKPFEVIHCDLWGPAPFVSYYGYSYYITFVDTYTKFTWIYFLKAKSDALKAF 603
Query: 4354 IHFKTLVENQFDKKIKSIQSGGGTEFKPLSKFFNDNGIVHRISCPYTPQQNGLVERKHRH 4533
FK L++NQF IK+IQS G EF+ + N+ GI HR++CP+T QNG VERKHRH
Sbjct: 604 TQFKALIQNQFQASIKAIQSDWGGEFRAFTALLNELGIQHRLTCPHTSHQNGTVERKHRH 663
Query: 4534 IVETGLSMISNAHMPTKFW 4590
IVE GL+++S+A +P KFW
Sbjct: 664 IVEMGLTLLSHAALPLKFW 682
Score = 152 bits (384), Expect = 2e-33
Identities = 113/410 (27%), Positives = 185/410 (45%), Gaps = 39/410 (9%)
Frame = +3
Query: 2727 VNVKLSESNYLVWKQQISAAIEGYGLESFINGDCSKPQQYTTLNDKQMV--NPEYINWKR 2900
+ +KL E N+L+W QQ++ I + L F+ P Q+ ++ D + + EY W
Sbjct: 1 LTIKLDEKNFLLWSQQVNGVITAHNLHRFVVNP-QIPLQFASIEDCALGINSDEYQQWLI 59
Query: 2901 QDQXXXXXXXXXXXXXXXVTMVGLTSSRDIWEALEVSFATQSRAKIMQYRLQLQTLKKRD 3080
+DQ ++ + ++W+ + F + +++ Q R +L+ KK
Sbjct: 60 KDQTLFTWLLSTLSDGVLPRVLSCRHAHEVWDKIHKYFNSVLKSRARQLRSELKNTKKLS 119
Query: 3081 MPMREFLNKIKTCCDMLAAAGQRLTDEEQISYILTGLGNDYNSVMVSVNSRIEPYSLREV 3260
+ E+L +IK+ + L A G ++++EQ+ IL GL ++NS ++ V SR + ++ +V
Sbjct: 120 RSVNEYLLRIKSIVNSLVAVGDMVSEQEQVDSILEGLPEEFNSFVMMVYSRFDTPTVEDV 179
Query: 3261 HALLLSFESRLEGLDIPQNQFGMDGSSPMVNYVVQGT----------------------- 3371
ALLL E++ E +F + +SP V+ V T
Sbjct: 180 EALLLLQEAQFE-------KFKQELTSPSVSANVAHTETNASDSNSEHESQELGTEHYNV 232
Query: 3372 -GNR-RGGFPQNNRGRGMNQSLVQXXXXXXXXXXXXXXXXXXXXXXXFTTPKMTCQICHR 3545
NR RG RGRG Q+ Q K+ CQIC +
Sbjct: 233 NANRGRGRGKGRGRGRGKGQAQNQG--------------------------KVKCQICAK 266
Query: 3546 TNHTADKCFYRADLSYMPGNNNSSNAYSPGGTVNVAQYHSE-------SVTKPAG--NMD 3698
NH A C+YR D M N NS Y G + ++ ++ +P NMD
Sbjct: 267 PNHDAINCWYRYDPQAM--NQNSRGGYQVGPSNRPQNFNPYMRPTAHLAMPQPYAMPNMD 324
Query: 3699 E---SCWFPDSGATHHVTYDFGNLNLASDYTGADKVQVGNGTGLDILHIG 3839
+ W+PDSGA+HH+TY+ NL+ +S YTG D+V +GNG G+ I +G
Sbjct: 325 QFSNGAWYPDSGASHHLTYNPNNLSYSSPYTGQDQVVMGNGQGVSIHSLG 374
Score = 127 bits (320), Expect = 6e-26
Identities = 56/110 (50%), Positives = 81/110 (73%), Gaps = 1/110 (0%)
Frame = +3
Query: 3 NAHMPTKFWDDAFSTAVFIINRLPAKVLN-FQTPLEKLTGHKPRYSLLKTFGCLCFPHLR 179
+A +P KFWD +F+ AV++INRLP+ + FQ+P L +P YS +K FGCLCFPHLR
Sbjct: 674 HAALPLKFWDHSFTQAVYLINRLPSSAIPLFQSPYHALHQSQPDYSQIKVFGCLCFPHLR 733
Query: 180 PYNKHKLEYRSQPGTFIGYSLQYKGYKVLLDNGKVLITRNVVFDETKFPF 329
PYN HKL+YRS P ++G S Q+KG+K L G++ I+++V+F E++FP+
Sbjct: 734 PYNNHKLQYRSSPCVYLGVSPQHKGHKCLDATGRIYISKDVIFHESQFPY 783
>gb|KHN22040.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Glycine soja]
Length = 1417
Score = 560 bits (1442), Expect = e-170
Identities = 283/536 (52%), Positives = 378/536 (70%), Gaps = 4/536 (0%)
Frame = +3
Query: 672 HHMVTRSKTGNLKPKSYAAVLQTPVEPTSHLQALKFPEWRKAMEQEYYALVKNGTWSLVP 851
H M+TR+KTGNLKPK + A L EP S AL P W +AM+ EY AL+ N TW+LVP
Sbjct: 890 HPMITRAKTGNLKPKVFVAAL----EPKSVKSALNDPAWLQAMQAEYKALMDNQTWTLVP 945
Query: 852 LPPDKGLINCKWIFKLKKNSDGSIARYKARLVARGFTQIAGLDYTETYSPVVKPATVRLV 1031
LP + I CKWIF++K+N DG++ ++KARLVA+GF Q AG D+TET+SPV+KP T+R++
Sbjct: 946 LPQHRKAIGCKWIFRVKENPDGTVNKFKARLVAKGFLQTAGFDFTETFSPVIKPITIRII 1005
Query: 1032 LSLDISHSWPIRQLDIDNAFLNGELDIDLYMEQVPGFEQLDSKGNPLVCKLKKSLYGLKQ 1211
L+L ++ W ++Q+D++NAFLNG L ++YM Q GFE D LVCKL KSLYGLKQ
Sbjct: 1006 LTLAVTFKWSVQQIDVNNAFLNGILQEEVYMTQPAGFEASDKS---LVCKLHKSLYGLKQ 1062
Query: 1212 ASRAWCSKLAIVLQSFGFTISQADNSLYFKKEKGNCILILTYVDDIIITGSCQKEVERII 1391
A RAW +L L GF S+ D SL + G C +L YVDDI+ITGS + +I
Sbjct: 1063 APRAWYDRLTQALLQLGFVKSKCDPSLLIHTQNGACTYVLIYVDDILITGSAPHLISDLI 1122
Query: 1392 TSLHQVFSLKDLGHLHYFLGIEVTPTAQG-VLLSQHKYISDILEQAGMKGAKGLNTPMVT 1568
L+ F+LK LG + YFLGIEV G +LL+Q KYI D+L +A M+ + + +PMV+
Sbjct: 1123 HKLNMKFALKQLGQIDYFLGIEVHHLPSGALLLNQTKYIRDLLCKAHMEDSAPIGSPMVS 1182
Query: 1569 HPVLSKDDGQPISNGTLYRKLVGALQYATISRPDISYSINKISQFMQNPLDTHWKALKRV 1748
LSK +++ TLYR +VGALQYAT++RPDI++S+NK+ QFM +PL++HWKA+KR+
Sbjct: 1183 SCRLSKYGSDTMTDPTLYRSIVGALQYATLTRPDIAFSVNKVCQFMAHPLESHWKAVKRI 1242
Query: 1749 LRYLAGTIDYGLHF---KSDSPLVLTAFADADWGSDIDDRRSTSGYCIYLGKNLITWSSK 1919
LRYL GT+ +GL + P L A++DADW +D DDRRSTSG CIY G NLI+W SK
Sbjct: 1243 LRYLNGTLSHGLLLTPSPTSPPFSLRAYSDADWATDQDDRRSTSGSCIYFGPNLISWGSK 1302
Query: 1920 KQNIVSRSSTEAEYRSIAAATCELIWLQSLLNELGIQMNRPSIIWTDNLGERSLSANPVY 2099
KQ +V+RSSTEAEYRS+A T +L+W+QSLL EL + P+++ DNL SLS NP+
Sbjct: 1303 KQQLVARSSTEAEYRSMANTTADLLWIQSLLRELQVPFLTPTLL-CDNLSAVSLSHNPIL 1361
Query: 2100 HSRTKHLELDLHFIREKVMNKAISVQHVPAIDQIADILTKPLSGQFFARLRNKLNV 2267
HS+TKH+ELD+HF+REKV++K +++ HVPA DQ+AD LTKPLS +R KL V
Sbjct: 1362 HSKTKHIELDIHFVREKVLSKQLNILHVPAQDQLADPLTKPLSPSQHTAIRTKLKV 1417
Score = 207 bits (528), Expect = 2e-50
Identities = 109/259 (42%), Positives = 150/259 (57%), Gaps = 5/259 (1%)
Frame = +1
Query: 3829 YILDQETKEVLLRGKVN-NGLYCFD----LTSLNEXXXXXXXXXXXXXXNPIFLQQQTSP 3993
++ Q++K+VLL G V +GLY F LT+ +F +
Sbjct: 425 FVKYQDSKQVLLEGTVGADGLYQFKPFKFLTNSGAASNSDSSSMSSSSQFSVF-NNPVNC 483
Query: 3994 NVHVLNVKNKDSINLWHSRLGHTSFDTVQRVLKTCNISFDINEVEPVCSSCIKAKSHTLP 4173
N V ++N + +WH RLGH V+ +L CNI F C+ C KSH L
Sbjct: 484 NNTVSVMQNGNVFQMWHLRLGHAHTSAVKNILNLCNIPFSNKTATLPCTFCCMGKSHRLH 543
Query: 4174 FSLSDTNHYNVLDLIYTDLWGPAPIRSVNGYSYYISFVDHCSRFTWLYLMKAKSDTSQVF 4353
LS+T + ++I+ DLWGPAP S GYSYYI+FVD ++FTW+Y +KAKSD + F
Sbjct: 544 SPLSNTVYTKPFEVIHCDLWGPAPFVSYYGYSYYITFVDTYTKFTWIYFLKAKSDALKAF 603
Query: 4354 IHFKTLVENQFDKKIKSIQSGGGTEFKPLSKFFNDNGIVHRISCPYTPQQNGLVERKHRH 4533
FK L++NQF IK+IQS G EF+ + N+ GI HR++CP+T QNG VERKHRH
Sbjct: 604 TQFKALIQNQFQASIKAIQSDWGGEFRAFTALLNELGIQHRLTCPHTSHQNGTVERKHRH 663
Query: 4534 IVETGLSMISNAHMPTKFW 4590
IVE GL+++S+A +P KFW
Sbjct: 664 IVEMGLTLLSHADLPLKFW 682
Score = 152 bits (384), Expect = 2e-33
Identities = 113/410 (27%), Positives = 185/410 (45%), Gaps = 39/410 (9%)
Frame = +3
Query: 2727 VNVKLSESNYLVWKQQISAAIEGYGLESFINGDCSKPQQYTTLNDKQMV--NPEYINWKR 2900
+ +KL E N+L+W QQ++ I + L F+ P Q+ ++ D + + EY W
Sbjct: 1 LTIKLDEKNFLLWSQQVNGVITAHNLHRFVVNP-QIPLQFASIEDCALGINSDEYQQWLI 59
Query: 2901 QDQXXXXXXXXXXXXXXXVTMVGLTSSRDIWEALEVSFATQSRAKIMQYRLQLQTLKKRD 3080
+DQ ++ + ++W+ + F + +++ Q R +L+ KK
Sbjct: 60 KDQTLFTWLLSTLSDGVLPRVLSCRHAHEVWDKIHKYFNSVLKSRARQLRSELKNTKKLS 119
Query: 3081 MPMREFLNKIKTCCDMLAAAGQRLTDEEQISYILTGLGNDYNSVMVSVNSRIEPYSLREV 3260
+ E+L +IK+ + L A G ++++EQ+ IL GL ++NS ++ V SR + ++ +V
Sbjct: 120 RSVNEYLLRIKSIVNSLVAVGDMVSEQEQVDSILEGLPEEFNSFVMMVYSRFDTPTVEDV 179
Query: 3261 HALLLSFESRLEGLDIPQNQFGMDGSSPMVNYVVQGT----------------------- 3371
ALLL E++ E +F + +SP V+ V T
Sbjct: 180 EALLLLQEAQFE-------KFKQELTSPSVSANVAHTETNASDSNSEHESQELGTEHYNV 232
Query: 3372 -GNR-RGGFPQNNRGRGMNQSLVQXXXXXXXXXXXXXXXXXXXXXXXFTTPKMTCQICHR 3545
NR RG RGRG Q+ Q K+ CQIC +
Sbjct: 233 NANRGRGRGKGRGRGRGKGQAQNQG--------------------------KVKCQICAK 266
Query: 3546 TNHTADKCFYRADLSYMPGNNNSSNAYSPGGTVNVAQYHSE-------SVTKPAG--NMD 3698
NH A C+YR D M N NS Y G + ++ ++ +P NMD
Sbjct: 267 PNHDAINCWYRYDPQAM--NQNSRGGYQVGPSNRPQNFNPYMRPTAHLAMPQPYAMPNMD 324
Query: 3699 E---SCWFPDSGATHHVTYDFGNLNLASDYTGADKVQVGNGTGLDILHIG 3839
+ W+PDSGA+HH+TY+ NL+ +S YTG D+V +GNG G+ I +G
Sbjct: 325 QFSNGAWYPDSGASHHLTYNPNNLSYSSPYTGQDQVVMGNGQGVSIHSLG 374
Score = 127 bits (318), Expect = 1e-25
Identities = 55/110 (50%), Positives = 81/110 (73%), Gaps = 1/110 (0%)
Frame = +3
Query: 3 NAHMPTKFWDDAFSTAVFIINRLPAKVLN-FQTPLEKLTGHKPRYSLLKTFGCLCFPHLR 179
+A +P KFWD +F+ AV++INRLP+ + FQ+P L +P YS +K FGCLCFPHLR
Sbjct: 674 HADLPLKFWDHSFTQAVYLINRLPSSAIPLFQSPYHALHQSQPDYSQIKVFGCLCFPHLR 733
Query: 180 PYNKHKLEYRSQPGTFIGYSLQYKGYKVLLDNGKVLITRNVVFDETKFPF 329
PYN HKL+Y+S P ++G S Q+KG+K L G++ I+++V+F E++FP+
Sbjct: 734 PYNNHKLQYKSSPCVYLGVSPQHKGHKCLDATGRIYISKDVIFHESQFPY 783
>emb|CAN76473.1| hypothetical protein VITISV_016007 [Vitis vinifera]
Length = 1002
Score = 543 bits (1400), Expect = e-169
Identities = 275/560 (49%), Positives = 377/560 (67%), Gaps = 8/560 (1%)
Frame = +3
Query: 612 NRHIDPVVISNENFESAAGTHHMVTRSKTGNLKPK---SYAAVLQTPVEPTSHL-----Q 767
+R + P ++S S H M TRSK G +KPK + L T V P+ L Q
Sbjct: 440 SRPVSPFILSPPI--SVPSLHPMTTRSKVGTIKPKLLPDHITYLSTSVSPSDQLPTTVSQ 497
Query: 768 ALKFPEWRKAMEQEYYALVKNGTWSLVPLPPDKGLINCKWIFKLKKNSDGSIARYKARLV 947
ALK P W M +EY ALV+N TW+LVP P +I+ KWIF++K NSDG+I RYKARLV
Sbjct: 498 ALKNPNWHTTMVEEYQALVRNNTWTLVPFHPSMNVIDSKWIFRVKYNSDGTIQRYKARLV 557
Query: 948 ARGFTQIAGLDYTETYSPVVKPATVRLVLSLDISHSWPIRQLDIDNAFLNGELDIDLYME 1127
A+GF Q AG+++T+T+SPV+K +T+R+V +L I+++W IRQ+D +NAFLNGE+ +Y+
Sbjct: 558 AKGFQQYAGVEFTDTFSPVIKASTIRVVFTLAITYNWEIRQIDFNNAFLNGEITETVYLS 617
Query: 1128 QVPGFEQLDSKGNPLVCKLKKSLYGLKQASRAWCSKLAIVLQSFGFTISQADNSLYFKKE 1307
Q GF + VCKL+K+LYGLKQA R W KL L ++GF S +D SL+ K
Sbjct: 618 QPAGFVSTSHPQH--VCKLQKALYGLKQAPRVWFHKLREALHTWGFISSTSDTSLFIYKH 675
Query: 1308 KGNCILILTYVDDIIITGSCQKEVERIITSLHQVFSLKDLGHLHYFLGIEVTPTAQGVLL 1487
GN +L+L YVDD++ITG+ V+ +I L F+LKDLG + FLG E T G+ L
Sbjct: 676 NGNFLLLLVYVDDLLITGNNVPLVQTLIQDLQNRFALKDLGLVKDFLGFEALRTTTGLHL 735
Query: 1488 SQHKYISDILEQAGMKGAKGLNTPMVTHPVLSKDDGQPISNGTLYRKLVGALQYATISRP 1667
+Q KY +D+L + M AK + TPM L G S+ TLYR +GALQY T +RP
Sbjct: 736 TQSKYTTDLLIKTKMHSAKPVPTPMSAALKLHAASGPAFSDPTLYRSTIGALQYLTYTRP 795
Query: 1668 DISYSINKISQFMQNPLDTHWKALKRVLRYLAGTIDYGLHFKSDSPLVLTAFADADWGSD 1847
DI++++NK+SQ++Q P + HW A KRVLRYL G + GLHF S L L + DADW S
Sbjct: 796 DIAFAVNKLSQYLQQPTELHWTACKRVLRYLKGIVHRGLHFTPASSLHLQVYTDADWASS 855
Query: 1848 IDDRRSTSGYCIYLGKNLITWSSKKQNIVSRSSTEAEYRSIAAATCELIWLQSLLNELGI 2027
IDDRRST+GYC++LG NL TWSS+KQ +V+RSST+AEYR++A A+ E+ WL+SL +ELGI
Sbjct: 856 IDDRRSTTGYCVFLGTNLFTWSSRKQPVVARSSTKAEYRALAHASXEVAWLRSLFSELGI 915
Query: 2028 QMNRPSIIWTDNLGERSLSANPVYHSRTKHLELDLHFIREKVMNKAISVQHVPAIDQIAD 2207
+ +IW DN G +L+ANPV+HSRTKH+E+D+ ++RE+V++K + V +VP+++Q AD
Sbjct: 916 SLVNTPVIWCDNQGAGALAANPVFHSRTKHIEVDVXYVREQVLDKKLVVSYVPSVEQXAD 975
Query: 2208 ILTKPLSGQFFARLRNKLNV 2267
+ TKPLS F L KLN+
Sbjct: 976 LFTKPLSIPRFQYLLTKLNL 995
Score = 62.4 bits (150), Expect(2) = 7e-09
Identities = 64/232 (27%), Positives = 84/232 (36%), Gaps = 40/232 (17%)
Frame = +3
Query: 3222 VNSRIEPYSLREVHALLLSFESRLEGL------DIPQNQFGMDGSSPMVNYVVQGTGNRR 3383
+ R E SL+EVH LL S E RLE L D+P G N G R
Sbjct: 160 IKERSEAISLQEVHYLLQSHEIRLEQLSAASVIDVPPAAHITVGGVQNSN---TNNGQFR 216
Query: 3384 GGFPQNNRGRGMNQSLVQXXXXXXXXXXXXXXXXXXXXXXXFTTPKMTCQICHRTNHTAD 3563
G +N R R + T ++ CQ+C + HTA
Sbjct: 217 GSSSKNFRPRNVRNP---------------------------QTSRIVCQLCGKMGHTAM 249
Query: 3564 KCFYRADLSYM----------------------PGNNNSSNAYSPGGTV------NVAQY 3659
KCF+R D+ + P + YS G V N Q
Sbjct: 250 KCFHRFDVYFQSPPRAQNQQFSSLHQPQQPQLRPPPLHQPQYYSTGPLVPSRPIQNSHQQ 309
Query: 3660 HSESVTKP-----AGNMDESC-WFPDSGATHHVTYDFGNLNLASDYTGADKV 3797
+ T P A ++D + WF DSGATHH+T D LN++ Y G V
Sbjct: 310 LDSTSTSPHAYIVAPDLDSNTSWFVDSGATHHMTTDSNTLNVSDHYCGXGNV 361
Score = 29.3 bits (64), Expect(2) = 7e-09
Identities = 9/28 (32%), Positives = 22/28 (78%)
Frame = +1
Query: 3832 ILDQETKEVLLRGKVNNGLYCFDLTSLN 3915
++D++++E+LL+G + GLY D++ ++
Sbjct: 361 VVDKKSREILLQGNLKEGLYQLDISKVS 388