BLASTX nr result
ID: Rehmannia27_contig00013854
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia27_contig00013854
(4910 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_011081158.1| PREDICTED: DNA-directed RNA polymerase IV su... 2137 0.0
ref|XP_012835484.1| PREDICTED: DNA-directed RNA polymerase IV su... 2030 0.0
gb|EYU38999.1| hypothetical protein MIMGU_mgv1a000239mg [Erythra... 1913 0.0
gb|EPS74753.1| hypothetical protein M569_00001, partial [Genlise... 1721 0.0
emb|CDP09818.1| unnamed protein product [Coffea canephora] 1531 0.0
ref|XP_009797463.1| PREDICTED: DNA-directed RNA polymerase IV su... 1501 0.0
ref|XP_009593317.1| PREDICTED: DNA-directed RNA polymerase IV su... 1498 0.0
ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV su... 1477 0.0
ref|XP_015085574.1| PREDICTED: DNA-directed RNA polymerase IV su... 1456 0.0
ref|XP_004245657.1| PREDICTED: DNA-directed RNA polymerase IV su... 1456 0.0
ref|XP_010661369.1| PREDICTED: DNA-directed RNA polymerase IV su... 1400 0.0
ref|XP_010661365.1| PREDICTED: DNA-directed RNA polymerase IV su... 1394 0.0
gb|AAY89361.1| RNA polymerase IV largest subunit [Antirrhinum ma... 1359 0.0
ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-... 1348 0.0
ref|XP_008238796.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 1348 0.0
ref|XP_012476045.1| PREDICTED: DNA-directed RNA polymerase IV su... 1339 0.0
gb|KJB25756.1| hypothetical protein B456_004G207300 [Gossypium r... 1333 0.0
ref|XP_015901884.1| PREDICTED: DNA-directed RNA polymerase IV su... 1327 0.0
ref|XP_011014513.1| PREDICTED: DNA-directed RNA polymerase IV su... 1319 0.0
ref|XP_011029161.1| PREDICTED: DNA-directed RNA polymerase IV su... 1315 0.0
>ref|XP_011081158.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Sesamum indicum]
Length = 1408
Score = 2137 bits (5538), Expect = 0.0
Identities = 1066/1410 (75%), Positives = 1187/1410 (84%), Gaps = 4/1410 (0%)
Frame = +1
Query: 388 IIGTVNEVSDAALGLPTTNATECGTCGAKNSKECEGHFGLINFPFTILNPYFMSEVAQIL 567
+I TVNEVSDAA GLPT+NA+EC TCGA++SK+CEGHFGLINFPFTILNPYFMSEVAQIL
Sbjct: 2 VITTVNEVSDAAFGLPTSNASECLTCGARSSKDCEGHFGLINFPFTILNPYFMSEVAQIL 61
Query: 568 NKICPGCKSIRRGNVKKADSASSHHQPKYCRYCNGKSKYGYPRMKFKVSSKDVFAKTAII 747
NKICPGCKS+R VKK DS S HH P+ CRYC G+ K GYP+MKFKVSSKDVFAKTAII
Sbjct: 62 NKICPGCKSVRHAKVKKVDSTSRHHPPRSCRYCAGRPKDGYPKMKFKVSSKDVFAKTAII 121
Query: 748 AEVHEMFVNKSSDWVLASDYWDIIPKDPSQAHEGLPANKRVLSPAQVYNILKDVCPRTLE 927
AEV+E +NK+S LA DYWD+IPKD +Q GLPANKRVL PAQVY+ILK VCPR LE
Sbjct: 122 AEVNETLLNKNSVRGLAPDYWDVIPKDSAQEFSGLPANKRVLLPAQVYSILKHVCPRVLE 181
Query: 928 ALVNRKNSIFLNSLLVTPNSHRVREFGQRITVDETTKMYRKLVDFRGTPNELSARVLDRY 1107
AL+ RKNSIFLNSLLVTPNSHRVREFGQRITVDETTKMYRKL+DFRGTPNELSARVLDRY
Sbjct: 182 ALLKRKNSIFLNSLLVTPNSHRVREFGQRITVDETTKMYRKLIDFRGTPNELSARVLDRY 241
Query: 1108 KLSKIRSEKLSNLQKIYEKQXXXXXXXXXXGLKNIKELLLGKRTDHSFRMVVVGDPRIKV 1287
K+SKIRSEKLS+L+KIYEKQ GLKNIKELLLGKRTDHSFRMVVVGDPRIKV
Sbjct: 242 KVSKIRSEKLSSLEKIYEKQSTNDSASSASGLKNIKELLLGKRTDHSFRMVVVGDPRIKV 301
Query: 1288 NEIGLPTQIAENVLISDHLNIWNWGKLEQCCEFMLKEKGNFSVLRNGQRVCIWSKDMLQK 1467
+EIGLP QIAENVLISDH+N+WNW +LE CC+FML +G FSVLRNGQR+CIWSKDML+
Sbjct: 302 DEIGLPFQIAENVLISDHINLWNWDRLEPCCDFMLYRRGYFSVLRNGQRICIWSKDMLRT 361
Query: 1468 GDSICRHLLDGDIVLINRPPSIHQHSLIALSVKILPINSVASINPLICSPLRGDFDGDCL 1647
GDSICR L+DGDIVLINRPPSIHQHSLIALSV+ILPI SV SINPL+CSPLRGDFDGDCL
Sbjct: 362 GDSICRPLIDGDIVLINRPPSIHQHSLIALSVRILPIKSVVSINPLVCSPLRGDFDGDCL 421
Query: 1648 HGYVPQSVNSRVELTELVSLDKQLVNGQDGRNXXXXXXXXXXXXXXXXENGVLLNKTEIQ 1827
HGYVPQSV SRVEL ELVSL++QL NGQ+GRN E+GVLLNK E+Q
Sbjct: 422 HGYVPQSVTSRVELNELVSLNEQLHNGQNGRNLLSLSQDSLTAAYLFLEDGVLLNKPEMQ 481
Query: 1828 QLQMFCPCIPVLPAIIKPTSRSSLWTGKQLFSLLLPPDFEFAYESNGVCIRKGELVSSSH 2007
QLQMFC +P+LPAIIK TS + WTGKQLF LLLPPDFEFAY SN VCIR+GELVSSSH
Sbjct: 482 QLQMFCSFMPILPAIIKSTS-GAAWTGKQLFGLLLPPDFEFAYASNDVCIRQGELVSSSH 540
Query: 2008 GSAWLNDNSENIFQCLLRHNRDRALDFLNAGQEVLCEWLSRRGXXXXXXXXXXXXXTESR 2187
GSAWL D+ +N+FQCLLRH RD+ LDFL+A QEVLCEWLSRRG ++SR
Sbjct: 541 GSAWLRDSCDNLFQCLLRHWRDKVLDFLHAAQEVLCEWLSRRGLSVSLSDLYLSPDSQSR 600
Query: 2188 KNLLDEIHYGLEEAEKLSEVSLLMVGGNEDLLVESSDENEDMEKFLKERILIDQQTKAEF 2367
KN+LDEI+YGL +AEKLS++SLLMV N+D LVESS+E+E+M+ FLKE + I QQTKAE
Sbjct: 601 KNILDEIYYGLLQAEKLSDISLLMVDCNQDFLVESSEEHENMKNFLKEHMSIAQQTKAEL 660
Query: 2368 FQASLSASKSVLWDMQNLVYKHCGSNNSFMAMLKAGSKGNLQKLFQHSMCLGLQHSLAPL 2547
FQAS+SASKSV WDMQNLVYK+ NNSF+AMLKAGSKGNLQKL QHSMCLGLQHSLAPL
Sbjct: 661 FQASISASKSVFWDMQNLVYKYSDKNNSFIAMLKAGSKGNLQKLVQHSMCLGLQHSLAPL 720
Query: 2548 SFPIPRELSCASWNDQKSYYSVHKFHGSQEISDSYIPCTMVANSYLAGLNPLECFVLSLT 2727
SF +PR LSCASWN+QK+ ++VHK H +QE +DSYIPC++VANSYLAGLNPLE FVLSLT
Sbjct: 721 SFSVPRYLSCASWNNQKNNFTVHKLH-NQETTDSYIPCSIVANSYLAGLNPLESFVLSLT 779
Query: 2728 TRDSSFGGHADVSGTLTRRLMFFMRDLINGYDGTVRSCHGNHVVQFNYCTKDL----SDA 2895
TRDSSF GHADVSGTLTRRLMFFMRDLI GYDGTVRSC+GN VVQF+YCT+D SDA
Sbjct: 780 TRDSSFSGHADVSGTLTRRLMFFMRDLIIGYDGTVRSCYGNQVVQFDYCTEDTSATHSDA 839
Query: 2896 SMGGHPVGXXXXXXXXXXXXXXLDQPVSVLEPSPLLTLKKVLDCGVKKSTGSKSASLFLS 3075
M GHPVG LDQPVS LEPSPLL LKKVL+CGVK+STG KSASLFLS
Sbjct: 840 LMAGHPVGSLAACAISEAAYSALDQPVSALEPSPLLALKKVLECGVKRSTGFKSASLFLS 899
Query: 3076 GRLRRWANGFEYGALEVKDHLESLLFSDIVSEVKICFXXXXXXXXXXXPWACHFHINKEV 3255
RLRRWANG EYGALEVKDHLES+ FSDIVSEV+ICF PWAC FHINKEV
Sbjct: 900 TRLRRWANGLEYGALEVKDHLESVFFSDIVSEVRICFSRQTKSNASISPWACIFHINKEV 959
Query: 3256 AKRRRLKLRSVIDALYMNNKFTGVKSKVILPKLHVTSKVCSEVDTRKKSDSVICISAALS 3435
AK+RR+KL+SVI L MNN TG+K K+ LPKL +TS+VCSE D K S ++I ISAAL+
Sbjct: 960 AKKRRIKLKSVIRTLSMNNGCTGLKFKITLPKLQITSQVCSEADINKTSHNIIYISAALT 1019
Query: 3436 ESLKGFSDLDILRDMVKPVLLQTVIKGFPEFKKVDILWKAEPNHPKSTKRPLGEPFLRVV 3615
ESLK FSDLDILRDMV PVLL+TVIKGFPEFKKVDILWK E NH + +KRP GE FLRVV
Sbjct: 1020 ESLKEFSDLDILRDMVIPVLLRTVIKGFPEFKKVDILWKDEANHKRFSKRPSGELFLRVV 1079
Query: 3616 TSEYCQKTKFWSILMDKCLRISNIIDWERSHPDDIHDCSEAYGIDVGWQCFVNSLHSAIS 3795
SEYC +TKFWSIL DKCLRI NIIDWERSHPDDIHD SEAYGID WQCFVNSLHSAIS
Sbjct: 1080 MSEYCDRTKFWSILKDKCLRIRNIIDWERSHPDDIHDYSEAYGIDTAWQCFVNSLHSAIS 1139
Query: 3796 DTGKTILPEHLVVTANCLSATGEFIALNAKGLAEQRKAANVCSPFSQACFSNPSDCLVKA 3975
DTGKTILPEHLVVTANCLS TGEF+ LNAKGL+ QRK AN+ +PFSQACF NPSDCLVKA
Sbjct: 1140 DTGKTILPEHLVVTANCLSTTGEFLPLNAKGLSLQRKEANIQAPFSQACFLNPSDCLVKA 1199
Query: 3976 AKMGQMDRLQGSLEALSWGQTPSVGTGCHFDIVYNGKGHEPAKPTDVYTLLSTHVARTKP 4155
AKMGQ+D LQGSLEALSWGQTPS+GTGC FDI+YNGKGHEP KPTDVYTLLS HV KP
Sbjct: 1200 AKMGQLDALQGSLEALSWGQTPSIGTGCQFDIMYNGKGHEPEKPTDVYTLLSNHVRCAKP 1259
Query: 4156 DDPMKQFSEKSIVSSHFNTKTRKSLLTKMASQHFSEVGIRKISQRLKRMLKEYPMNSKLS 4335
+D K S + S N K R++L+ +M SQHFS VGI+KISQRLKRMLKEYPMNS+L+
Sbjct: 1260 NDVAKHLSVRPNGLSP-NIKQRQTLVKRMVSQHFSVVGIQKISQRLKRMLKEYPMNSQLN 1318
Query: 4336 GEDKSTAIKALQFHPRWEDKIGTGVLDIKVGRHPDHNETCFFLVRTDGTEEDFSYNKCIH 4515
GEDKSTA++ALQFHPRWE+KIGTGV+DIKVGRHPDH E+CF L+RTDGTEEDFSYNKCIH
Sbjct: 1319 GEDKSTAMRALQFHPRWEEKIGTGVMDIKVGRHPDHKESCFVLIRTDGTEEDFSYNKCIH 1378
Query: 4516 HALEIIAPEKASAYRSRKQNLAQVPTVQLG 4605
+AL+I+APEKA AY SRK+NL + P V++G
Sbjct: 1379 NALQIVAPEKAKAYLSRKENLNRNPEVEVG 1408
>ref|XP_012835484.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Erythranthe
guttata] gi|848869730|ref|XP_012835485.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Erythranthe
guttata] gi|848869733|ref|XP_012835486.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Erythranthe
guttata]
Length = 1447
Score = 2030 bits (5260), Expect = 0.0
Identities = 1004/1450 (69%), Positives = 1174/1450 (80%), Gaps = 5/1450 (0%)
Frame = +1
Query: 268 MQRASMDNNLHIVQPVTSARLKAIHLNILSDEDAVKISASIIGTVNEVSDAALGLPTTNA 447
MQ+ASMDN+L +VQ +T RLK IHL ILSDEDA K+SA ++GTVNEVSDAALGLPT A
Sbjct: 1 MQQASMDNDLTVVQQITFGRLKGIHLRILSDEDAEKMSAIVVGTVNEVSDAALGLPTQYA 60
Query: 448 TECGTCGAKNSKECEGHFGLINFPFTILNPYFMSEVAQILNKICPGCKSIRRGNVKKADS 627
TEC TCGAKNS++CEGHFGLI FPFTILNPY+MSEV+QILNKICPGCK+ R K ADS
Sbjct: 61 TECATCGAKNSRDCEGHFGLIKFPFTILNPYYMSEVSQILNKICPGCKTFRHSKTKNADS 120
Query: 628 ASSHHQPKYCRYCNGKSKYGYPRMKFKVSSKDVFAKTAIIAEVHEMFVNKSSDWVLASDY 807
+S+H+Q + CRYC+GKSK GYP+M F+VSSKDVFAK+AIIAEV E+ VNK S LA DY
Sbjct: 121 SSAHNQSRNCRYCSGKSKDGYPKMTFRVSSKDVFAKSAIIAEVKEILVNKCSSGNLAYDY 180
Query: 808 WDIIPKDPSQAHEGLPANKRVLSPAQVYNILKDVCPRTLEALVNRKNSIFLNSLLVTPNS 987
WD+IPKD + H LP N+RVL PAQVYNILKDVCP TL+ L+ RKNSIFLNSLLVTPNS
Sbjct: 181 WDVIPKDSAVEHAVLPPNRRVLLPAQVYNILKDVCPTTLQGLLKRKNSIFLNSLLVTPNS 240
Query: 988 HRVREFGQRITVDETTKMYRKLVDFRGTPNELSARVLDRYKLSKIRSEKLSNLQKIYEKQ 1167
HRVREFGQRIT+DE T+MYRKLVDFRG+PNEL+ARVLDRYKLSKIRSEK+S++QK YE+Q
Sbjct: 241 HRVREFGQRITIDELTRMYRKLVDFRGSPNELTARVLDRYKLSKIRSEKVSSMQKEYERQ 300
Query: 1168 XXXXXXXXXXGLKNIKELLLGKRTDHSFRMVVVGDPRIKVNEIGLPTQIAENVLISDHLN 1347
LKNIKEL+L KRTD+ FRMVVVGDPRI+V+EIGLP+ +AEN+LI+DH+N
Sbjct: 301 SLNDSASSSSALKNIKELVLAKRTDNCFRMVVVGDPRIRVDEIGLPSHVAENMLIADHIN 360
Query: 1348 IWNWGKLEQCCEFMLKEKGNFSVLRNGQRVCIWSKDMLQKGDSICRHLLDGDIVLINRPP 1527
+WNW KLE CC+FML KGNFS+LRNG+R+ IWSKDML+ GDS+ R L+DGDIVL+NRPP
Sbjct: 361 LWNWDKLEVCCDFMLCHKGNFSILRNGERITIWSKDMLRTGDSLRRPLIDGDIVLVNRPP 420
Query: 1528 SIHQHSLIALSVKILPINSVASINPLICSPLRGDFDGDCLHGYVPQSVNSRVELTELVSL 1707
SIHQHSLIALSVKILP SV SINPLICSP RGDFDGDCLHGYVPQSVNSRVEL ELVSL
Sbjct: 421 SIHQHSLIALSVKILPTTSVVSINPLICSPFRGDFDGDCLHGYVPQSVNSRVELQELVSL 480
Query: 1708 DKQLVNGQDGRNXXXXXXXXXXXXXXXXENGVLLNKTEIQQLQMFCP-CIPVLPAIIKPT 1884
DKQLVNGQ GRN E+GV+LNKTEIQQLQMF C+P+LPA+I
Sbjct: 481 DKQLVNGQSGRNLLSLAQDSLTAAHLILEDGVILNKTEIQQLQMFSSSCMPILPALIDSA 540
Query: 1885 SRSSLWTGKQLFSLLLPPDFEFAYESNGVCIRKGELVSSSHGSAWLNDNSENIFQCLLRH 2064
SR++ WTGKQ+F LLPP EF+Y SN + GE++SSS GS+WLND SEN++QCL+R
Sbjct: 541 SRTNFWTGKQVFGHLLPP--EFSYASNSAHVMNGEVLSSS-GSSWLNDTSENLYQCLVRD 597
Query: 2065 NRDRALDFLNAGQEVLCEWLSRRGXXXXXXXXXXXXXTESRKNLLDEIHYGLEEAEKLSE 2244
DRAL F +A QEVLCEW++RRG SRKNLLDEI YGL+EA+ LS+
Sbjct: 598 FPDRALGFFDAAQEVLCEWIARRGLSVSLADLYLSSDQHSRKNLLDEIFYGLQEAKMLSD 657
Query: 2245 VSLLMVGGNEDLLVESSDENEDMEKFLKERILIDQQTKAEFFQASLSASKSVLWDMQNLV 2424
+S LMV N+D LVE +E ME L E++LI QQTKAE FQAS+S SKSV+ D+QNL
Sbjct: 658 ISSLMVDWNQDFLVECPEE-VGMENLLTEQMLIGQQTKAEIFQASVSVSKSVVRDIQNLA 716
Query: 2425 YKHCGSNNSFMAMLKAGSKGNLQKLFQHSMCLGLQHSLAPLSFPIPRELSCASWNDQKSY 2604
YK+ NNSF+AMLKAGSKGNL KLFQ S+CLGLQH+LAP+SF IPR+L+CASWN QK
Sbjct: 717 YKYPSKNNSFIAMLKAGSKGNLAKLFQQSLCLGLQHTLAPVSFSIPRDLTCASWNYQKGN 776
Query: 2605 YSVHKFHGSQEISDSYIPCTMVANSYLAGLNPLECFVLSLTTRDSSFGGHADVSGTLTRR 2784
VH F+G E+S+SYIPC +V++S+LAGLNPLE FVLSLT RDSSF GHADVSGT+TRR
Sbjct: 777 SGVHNFNGYPEVSESYIPCALVSSSFLAGLNPLENFVLSLTARDSSFSGHADVSGTITRR 836
Query: 2785 LMFFMRDLINGYDGTVRSCHGNHVVQFNYCTKDLS----DASMGGHPVGXXXXXXXXXXX 2952
+M+FMRD+I GYDGTVRS +GN VVQFNYCTK++S DA++GGHPVG
Sbjct: 837 IMYFMRDIIIGYDGTVRSSYGNQVVQFNYCTKEMSAADSDAAVGGHPVGALAACAISEAA 896
Query: 2953 XXXLDQPVSVLEPSPLLTLKKVLDCGVKKSTGSKSASLFLSGRLRRWANGFEYGALEVKD 3132
LDQPVS LEPSPLL +KK+L+CGVKK+TG KSASLFLS L RW +G EYGA EVK
Sbjct: 897 YSALDQPVSALEPSPLLAMKKILECGVKKNTGYKSASLFLSRALGRWTDGLEYGAKEVKS 956
Query: 3133 HLESLLFSDIVSEVKICFXXXXXXXXXXXPWACHFHINKEVAKRRRLKLRSVIDALYMNN 3312
HLE ++FSD+VSE +IC+ PW CHFHINKEVA++R+L++RSVI+ALY N+
Sbjct: 957 HLECIVFSDVVSETRICYSSQTNSSNSISPWVCHFHINKEVARKRQLQIRSVINALYTNS 1016
Query: 3313 KFTGVKSKVILPKLHVTSKVCSEVDTRKKSDSVICISAALSESLKGFSDLDILRDMVKPV 3492
KF+GV K+ LPKL +TS++CSE D +SDS+ICIS +L E+ + FSDLDILRDMV PV
Sbjct: 1017 KFSGVNLKINLPKLQITSRLCSEADICNQSDSIICISVSLIETFREFSDLDILRDMVMPV 1076
Query: 3493 LLQTVIKGFPEFKKVDILWKAEPNHPKSTKRPLGEPFLRVVTSEYCQKTKFWSILMDKCL 3672
+LQTVIKGF EFKKVDILWK +P HPK ++ P G+PFLRVV SEYC++TKFWSIL DKCL
Sbjct: 1077 ILQTVIKGFREFKKVDILWKDDPKHPKFSRSPPGKPFLRVVMSEYCERTKFWSILKDKCL 1136
Query: 3673 RISNIIDWERSHPDDIHDCSEAYGIDVGWQCFVNSLHSAISDTGKTILPEHLVVTANCLS 3852
I NIIDW++SHPDDI D SEAYG+D WQCFV SLHSAIS TGK ILPEHL++TANCLS
Sbjct: 1137 PIRNIIDWKQSHPDDILDISEAYGVDAAWQCFVTSLHSAISGTGKPILPEHLILTANCLS 1196
Query: 3853 ATGEFIALNAKGLAEQRKAANVCSPFSQACFSNPSDCLVKAAKMGQMDRLQGSLEALSWG 4032
ATGEF+ LNAKGLA QRK ANV SPF+Q C SNPSDC +KAAKMGQMD LQGSLEAL+WG
Sbjct: 1197 ATGEFVPLNAKGLALQRKEANVHSPFNQGCLSNPSDCFLKAAKMGQMDGLQGSLEALAWG 1256
Query: 4033 QTPSVGTGCHFDIVYNGKGHEPAKPTDVYTLLSTHVARTKPDDPMKQFSEKSIVSSHFNT 4212
QTP +GTGC FDIVYNGKGH PAK DVY+LLSTH R KP+ KQ S SI S HFNT
Sbjct: 1257 QTPPIGTGCRFDIVYNGKGHIPAKNADVYSLLSTHAERAKPNAMPKQVSGISISSYHFNT 1316
Query: 4213 KTRKSLLTKMASQHFSEVGIRKISQRLKRMLKEYPMNSKLSGEDKSTAIKALQFHPRWED 4392
K K+LL +M SQ+FS VGI+KISQRLKRMLK+YPMNS+L+GED+STAI+ALQFHP+W+D
Sbjct: 1317 KGCKTLLRRMVSQNFSMVGIQKISQRLKRMLKQYPMNSQLTGEDRSTAIRALQFHPQWKD 1376
Query: 4393 KIGTGVLDIKVGRHPDHNETCFFLVRTDGTEEDFSYNKCIHHALEIIAPEKASAYRSRKQ 4572
KIG+GV +IKVGRHP+H ETCFFLVRTDGTEEDFSYNKCI HALEIIAPEKA YRSRK+
Sbjct: 1377 KIGSGVSEIKVGRHPEHKETCFFLVRTDGTEEDFSYNKCIRHALEIIAPEKAKGYRSRKE 1436
Query: 4573 NLAQVPTVQL 4602
N+ + ++L
Sbjct: 1437 NVVRNQVIEL 1446
>gb|EYU38999.1| hypothetical protein MIMGU_mgv1a000239mg [Erythranthe guttata]
Length = 1379
Score = 1913 bits (4955), Expect = 0.0
Identities = 962/1444 (66%), Positives = 1120/1444 (77%), Gaps = 4/1444 (0%)
Frame = +1
Query: 283 MDNNLHIVQPVTSARLKAIHLNILSDEDAVKISASIIGTVNEVSDAALGLPTTNATECGT 462
MDN+L +VQ +T RLK IHL ILSDEDA K+SA ++GTVNEVSDAALGLPT ATEC T
Sbjct: 1 MDNDLTVVQQITFGRLKGIHLRILSDEDAEKMSAIVVGTVNEVSDAALGLPTQYATECAT 60
Query: 463 CGAKNSKECEGHFGLINFPFTILNPYFMSEVAQILNKICPGCKSIRRGNVKKADSASSHH 642
CGAKNS++CEGHFGLI FPFTILNPY+MSEV+QILNKICPGCK+ R K ADS+S+H+
Sbjct: 61 CGAKNSRDCEGHFGLIKFPFTILNPYYMSEVSQILNKICPGCKTFRHSKTKNADSSSAHN 120
Query: 643 QPKYCRYCNGKSKYGYPRMKFKVSSKDVFAKTAIIAEVHEMFVNKSSDWVLASDYWDIIP 822
Q + CRYC+GKSK GYP+M F+VSSKDVFAK+AIIAEV E+ VNK S LA DYWD+IP
Sbjct: 121 QSRNCRYCSGKSKDGYPKMTFRVSSKDVFAKSAIIAEVKEILVNKCSSGNLAYDYWDVIP 180
Query: 823 KDPSQAHEGLPANKRVLSPAQVYNILKDVCPRTLEALVNRKNSIFLNSLLVTPNSHRVRE 1002
KD + H LP N+RVL PAQVYNILKDVCP TL+ L+ RKNSIFLNSLLVTPNSHRVRE
Sbjct: 181 KDSAVEHAVLPPNRRVLLPAQVYNILKDVCPTTLQGLLKRKNSIFLNSLLVTPNSHRVRE 240
Query: 1003 FGQRITVDETTKMYRKLVDFRGTPNELSARVLDRYKLSKIRSEKLSNLQKIYEKQXXXXX 1182
FGQRIT+DE T+MYRKLVDFRG+PNEL+AR L+ S
Sbjct: 241 FGQRITIDELTRMYRKLVDFRGSPNELTARSLNDSASSS--------------------- 279
Query: 1183 XXXXXGLKNIKELLLGKRTDHSFRMVVVGDPRIKVNEIGLPTQIAENVLISDHLNIWNWG 1362
LKNIKEL+L KRTD+ FRMVVVGDPRI+V+EIGLP+ +AEN+LI+DH+N+WNW
Sbjct: 280 ----SALKNIKELVLAKRTDNCFRMVVVGDPRIRVDEIGLPSHVAENMLIADHINLWNWD 335
Query: 1363 KLEQCCEFMLKEKGNFSVLRNGQRVCIWSKDMLQKGDSICRHLLDGDIVLINRPPSIHQH 1542
KLE CC+FML KGNFS+LRNG+R+ IWSKDML+ GDS+ R L+DGDIVL+NRPPSIHQH
Sbjct: 336 KLEVCCDFMLCHKGNFSILRNGERITIWSKDMLRTGDSLRRPLIDGDIVLVNRPPSIHQH 395
Query: 1543 SLIALSVKILPINSVASINPLICSPLRGDFDGDCLHGYVPQSVNSRVELTELVSLDKQLV 1722
SLIALSVKILP SV SINPLICSP RGDFDGDCLHGYVPQSVNSRVEL ELVSLDKQLV
Sbjct: 396 SLIALSVKILPTTSVVSINPLICSPFRGDFDGDCLHGYVPQSVNSRVELQELVSLDKQLV 455
Query: 1723 NGQDGRNXXXXXXXXXXXXXXXXENGVLLNKTEIQQLQMFCPCIPVLPAIIKPTSRSSLW 1902
NGQ GRN E+GV+LNKTEIQQLQMF
Sbjct: 456 NGQSGRNLLSLAQDSLTAAHLILEDGVILNKTEIQQLQMF-------------------- 495
Query: 1903 TGKQLFSLLLPPDFEFAYESNGVCIRKGELVSSSHGSAWLNDNSENIFQCLLRHNRDRAL 2082
LF LLPP EF+Y SN + GE++SSS GS+WLND SEN++QCL
Sbjct: 496 -SSSLFGHLLPP--EFSYASNSAHVMNGEVLSSS-GSSWLNDTSENLYQCL--------- 542
Query: 2083 DFLNAGQEVLCEWLSRRGXXXXXXXXXXXXXTESRKNLLDEIHYGLEEAEKLSEVSLLMV 2262
EVLCEW++RRG SRKNLLDEI YGL+EA+ LS++S LMV
Sbjct: 543 -------EVLCEWIARRGLSVSLADLYLSSDQHSRKNLLDEIFYGLQEAKMLSDISSLMV 595
Query: 2263 GGNEDLLVESSDENEDMEKFLKERILIDQQTKAEFFQASLSASKSVLWDMQNLVYKHCGS 2442
N+D LVE +E ME L E++LI QQTKAE FQAS+S SKSV+ D+QNL YK+
Sbjct: 596 DWNQDFLVECPEE-VGMENLLTEQMLIGQQTKAEIFQASVSVSKSVVRDIQNLAYKYPSK 654
Query: 2443 NNSFMAMLKAGSKGNLQKLFQHSMCLGLQHSLAPLSFPIPRELSCASWNDQKSYYSVHKF 2622
NNSF+AMLKAGSKGNL KLFQ S+CLGLQH+LAP+SF IPR+L+CASWN QK VH F
Sbjct: 655 NNSFIAMLKAGSKGNLAKLFQQSLCLGLQHTLAPVSFSIPRDLTCASWNYQKGNSGVHNF 714
Query: 2623 HGSQEISDSYIPCTMVANSYLAGLNPLECFVLSLTTRDSSFGGHADVSGTLTRRLMFFMR 2802
+G E+S+SYIPC +V++S+LAGLNPLE FVLSLT RDSSF GHADVSGT+TRR+M+FMR
Sbjct: 715 NGYPEVSESYIPCALVSSSFLAGLNPLENFVLSLTARDSSFSGHADVSGTITRRIMYFMR 774
Query: 2803 DLINGYDGTVRSCHGNHVVQFNYCTKDL----SDASMGGHPVGXXXXXXXXXXXXXXLDQ 2970
D+I GYDGTVRS +GN VVQFNYCTK++ SDA++GGHPVG LDQ
Sbjct: 775 DIIIGYDGTVRSSYGNQVVQFNYCTKEMSAADSDAAVGGHPVGALAACAISEAAYSALDQ 834
Query: 2971 PVSVLEPSPLLTLKKVLDCGVKKSTGSKSASLFLSGRLRRWANGFEYGALEVKDHLESLL 3150
PVS LEPSPLL +KK+L+CGVKK+TG KSASLFLS L RW +G EYGA EVK HLE ++
Sbjct: 835 PVSALEPSPLLAMKKILECGVKKNTGYKSASLFLSRALGRWTDGLEYGAKEVKSHLECIV 894
Query: 3151 FSDIVSEVKICFXXXXXXXXXXXPWACHFHINKEVAKRRRLKLRSVIDALYMNNKFTGVK 3330
FSD+VSE +IC+ PW CHFHINKEVA++R+L++RSVI+ALY N+KF+GV
Sbjct: 895 FSDVVSETRICYSSQTNSSNSISPWVCHFHINKEVARKRQLQIRSVINALYTNSKFSGVN 954
Query: 3331 SKVILPKLHVTSKVCSEVDTRKKSDSVICISAALSESLKGFSDLDILRDMVKPVLLQTVI 3510
K+ LPKL +TS++CSE D +SDS+ICIS +L E+ + FSDLDILRDMV PV+LQTVI
Sbjct: 955 LKINLPKLQITSRLCSEADICNQSDSIICISVSLIETFREFSDLDILRDMVMPVILQTVI 1014
Query: 3511 KGFPEFKKVDILWKAEPNHPKSTKRPLGEPFLRVVTSEYCQKTKFWSILMDKCLRISNII 3690
KGF EFKKVDILWK +P HPK ++ P G+PFLRVV SEYC++TKFWSIL DKCL I NII
Sbjct: 1015 KGFREFKKVDILWKDDPKHPKFSRSPPGKPFLRVVMSEYCERTKFWSILKDKCLPIRNII 1074
Query: 3691 DWERSHPDDIHDCSEAYGIDVGWQCFVNSLHSAISDTGKTILPEHLVVTANCLSATGEFI 3870
DW++SHPDDI D SEAYG+D WQCFV SLHSAIS TGK ILPEHL++TANCLSATGEF+
Sbjct: 1075 DWKQSHPDDILDISEAYGVDAAWQCFVTSLHSAISGTGKPILPEHLILTANCLSATGEFV 1134
Query: 3871 ALNAKGLAEQRKAANVCSPFSQACFSNPSDCLVKAAKMGQMDRLQGSLEALSWGQTPSVG 4050
LNAKGLA QRK ANV SPF+Q C SNPSDC +KAAKMGQMD LQGSLEAL+WGQTP +G
Sbjct: 1135 PLNAKGLALQRKEANVHSPFNQGCLSNPSDCFLKAAKMGQMDGLQGSLEALAWGQTPPIG 1194
Query: 4051 TGCHFDIVYNGKGHEPAKPTDVYTLLSTHVARTKPDDPMKQFSEKSIVSSHFNTKTRKSL 4230
TGC FDIVYNGKGH PAK DVY+LLSTH R KP+ KQ S SI S HFNTK K+L
Sbjct: 1195 TGCRFDIVYNGKGHIPAKNADVYSLLSTHAERAKPNAMPKQVSGISISSYHFNTKGCKTL 1254
Query: 4231 LTKMASQHFSEVGIRKISQRLKRMLKEYPMNSKLSGEDKSTAIKALQFHPRWEDKIGTGV 4410
L +M SQ+FS VGI+KISQRLKRMLK+YPMNS+L+GED+STAI+ALQFHP+W+DKIG+GV
Sbjct: 1255 LRRMVSQNFSMVGIQKISQRLKRMLKQYPMNSQLTGEDRSTAIRALQFHPQWKDKIGSGV 1314
Query: 4411 LDIKVGRHPDHNETCFFLVRTDGTEEDFSYNKCIHHALEIIAPEKASAYRSRKQNLAQVP 4590
+IKVGRHP+H ETCFFLVRTDGTEEDFSYNKCI HALEIIAPEKA YRSRK+N+ +
Sbjct: 1315 SEIKVGRHPEHKETCFFLVRTDGTEEDFSYNKCIRHALEIIAPEKAKGYRSRKENVVRNQ 1374
Query: 4591 TVQL 4602
++L
Sbjct: 1375 VIEL 1378
>gb|EPS74753.1| hypothetical protein M569_00001, partial [Genlisea aurea]
Length = 1380
Score = 1721 bits (4456), Expect = 0.0
Identities = 878/1398 (62%), Positives = 1059/1398 (75%), Gaps = 7/1398 (0%)
Frame = +1
Query: 373 KISASIIGTVNEVSDAALGLPTTNATECGTCGAKNSKECEGHFGLINFPFTILNPYFMSE 552
KISA ++ VNEVSDA+LGLP+ NA EC TCGA ++KECEGHFG+INF +TILNPY+M E
Sbjct: 1 KISAIVVSNVNEVSDASLGLPSINARECLTCGANSAKECEGHFGVINFNYTILNPYYMPE 60
Query: 553 VAQILNKICPGCKSIRRGNVKKADSASSHHQPKYCRYCNGKSKYGYPRMKFKVSSKDVFA 732
+A ILNKICPGCKSIR+ +KK DSAS + C+YCN S GYP+MKF+VS+++VFA
Sbjct: 61 IANILNKICPGCKSIRQRKIKKGDSASQQN----CKYCNVTS-LGYPKMKFRVSTREVFA 115
Query: 733 KTAIIAEVHEMFVNKSSDWVLASDYWDIIPKDPSQAHEGLPANKRVLSPAQVYNILKDVC 912
KTAIIAEV EM VN+ LASDYWDIIPKD Q +P+N+RVL P+QVY+ILKDVC
Sbjct: 116 KTAIIAEVQEMAVNQHHCIGLASDYWDIIPKDSPQDQSDIPSNRRVLYPSQVYSILKDVC 175
Query: 913 PRTLEALVNRKNSIFLNSLLVTPNSHRVREFGQRITVDETTKMYRKLVDFRGTPNELSAR 1092
P+TLEAL+ RKNSIFLNSLLVTPNSHRVREFG ITVD TT++YRKL DFRG+ NEL+AR
Sbjct: 176 PKTLEALLKRKNSIFLNSLLVTPNSHRVREFGGHITVDGTTRLYRKLTDFRGSANELNAR 235
Query: 1093 VLDRYKLSKIRSEKLSNLQKIYEKQXXXXXXXXXXGLKNIKELLLGKRTDHSFRMVVVGD 1272
VL+RYK+ SEK+S ++KIYEKQ GL+NIKEL+L KRTD++FRMVVVGD
Sbjct: 236 VLERYKIC---SEKVSAIEKIYEKQSSNDSASSSSGLRNIKELILAKRTDNAFRMVVVGD 292
Query: 1273 PRIKVNEIGLPTQIAENVLISDHLNIWNWGKLEQCCEFMLKEKGNFS---VLRNGQRVCI 1443
PR+KV+EIGLP QIAE+VLISD ++I +WGKLE C+ ML +K FS V+RNGQ+ I
Sbjct: 293 PRLKVDEIGLPIQIAESVLISDLISIHSWGKLESWCDLMLYKKAPFSPFSVIRNGQKTHI 352
Query: 1444 WSKDMLQKGDSICRHLLDGDIVLINRPPSIHQHSLIALSVKILPINSVASINPLICSPLR 1623
+SKDMLQ GDSI R + DGDIVLINRPPSIHQHSL+ALSVK+LPI SV +INPL C PLR
Sbjct: 353 FSKDMLQVGDSISRPISDGDIVLINRPPSIHQHSLLALSVKVLPIKSVIAINPLTCLPLR 412
Query: 1624 GDFDGDCLHGYVPQSVNSRVELTELVSLDKQLVNGQDGRNXXXXXXXXXXXXXXXXENGV 1803
GDFDGDCLHG+VPQS+NSRVE+ EL SL KQLVNGQ+GR+ N V
Sbjct: 413 GDFDGDCLHGFVPQSLNSRVEIGELASLKKQLVNGQNGRSLMSLGQDSLTAAYLILNNSV 472
Query: 1804 LLNKTEIQQLQMFCPCIPVLPAIIKPTSRSSLWTGKQLFSLLLPPDFEFAYESNGVCIRK 1983
LNK E QQLQMFC C+P+LPAI+ +S + WTGKQLF+LLLP D F Y S+ VCIRK
Sbjct: 473 TLNKAEFQQLQMFCSCVPILPAIVNMSSNGTWWTGKQLFTLLLPVDSGFDYVSSDVCIRK 532
Query: 1984 GELVSSSHGSAWLNDNSENIFQCLLRHNRDRALDFLNAGQEVLCEWLSRRGXXXXXXXXX 2163
GEL+SSS+ ++WL D EN++ CL+RH DRAL FLN QEVLCEWLSR+G
Sbjct: 533 GELISSSNCTSWLRDADENLYLCLVRHCGDRALGFLNTAQEVLCEWLSRQGLSVSLSDLY 592
Query: 2164 XXXXTESRKNLLDEIHYGLEEAEKLSEVSLLMVGGNEDLLVESSDENEDMEKFLKERILI 2343
SRKNLL+E++YGL+EA +LSEVS LMV + D LVE ED +KE I
Sbjct: 593 ISSDRHSRKNLLEEVYYGLQEAGRLSEVSSLMVDQHRDFLVEHMGNMEDS---IKEHTAI 649
Query: 2344 DQQTKAEFFQASLSASKSVLWDMQNLVYKHCGSNNSFMAMLKAGSKGNLQKLFQHSMCLG 2523
+AE FQAS+SAS+SV D+QNLVY++ + NSF++MLK+GSKGNLQK QHSMC+G
Sbjct: 650 SSHARAELFQASVSASRSVFRDLQNLVYRYASNENSFISMLKSGSKGNLQKFVQHSMCVG 709
Query: 2524 LQHSLAPLSFPIPRELSCASWNDQKSYYSVHKFHGSQEISDSYIPCTMVANSYLAGLNPL 2703
LQHSLAPLSF + +L+CASWN +K Y + K +SDSYI C++V NS+L GLNP+
Sbjct: 710 LQHSLAPLSFSVADQLTCASWNKEKCYSDIPK----SVVSDSYIVCSIVKNSFLEGLNPI 765
Query: 2704 ECFVLSLTTRDSSFGGHADVSGTLTRRLMFFMRDLINGYDGTVRSCHGNHVVQFNYCTKD 2883
+CF SLT+RDSSF GHADVSGT+ RRLM+FMRDLI GYDGTVR+C+GN VVQFNY + D
Sbjct: 766 QCFTHSLTSRDSSFSGHADVSGTICRRLMYFMRDLIIGYDGTVRNCYGNQVVQFNYFSGD 825
Query: 2884 LS-DASMGGHPVGXXXXXXXXXXXXXXLDQPVSVLEPSPLLTLKKVLDCGVKKSTGSKSA 3060
++ DA+MGGHPVG LD P+S LEPSPLL LK+VL+CGVK+ST K+A
Sbjct: 826 VNKDAAMGGHPVGSLAGCAISEAAYSALDLPISALEPSPLLALKEVLECGVKRSTRCKTA 885
Query: 3061 SLFLSGRLRRWANGFEYGALEVKDHLESLLFSDIVSEVKICFXXXXXXXXXXXPWACHFH 3240
SLFLS LRRWA+GFEYGALEVK+HLE L FSDIVS+V+IC PW C+F+
Sbjct: 886 SLFLSKGLRRWAHGFEYGALEVKNHLERLCFSDIVSDVRIC-PWIDDNTSTTSPWTCNFY 944
Query: 3241 INKEVAKRRRLKLRSVIDALYMNNKFTGVKSKVILPKLHVTSKVCSEVDTRKKSDSVICI 3420
INKEVAK+ RLK+ S++DAL+ NNK K K+ LP L +++K+CSE D K+SDS CI
Sbjct: 945 INKEVAKKMRLKMHSIVDALHRNNKLASKKLKIYLPALWISTKLCSEADV-KRSDS-FCI 1002
Query: 3421 SAALSESLKGFSDLDILRDMVKPVLLQTVIKGFPEFKKVDILWKAEPNHPKSTKRPLGEP 3600
+A L + FSD++ILRDMV PVLL+TVIKGFPEFKKVDILWK EPNH K +R GE
Sbjct: 1003 AAKLIMKHEKFSDMEILRDMVVPVLLKTVIKGFPEFKKVDILWKDEPNHEKVARRTSGEL 1062
Query: 3601 FLRVVTSEYCQKTKFWSILMDKCLRISNIIDWERSHPDDIHDCSEAYGIDVGWQCFVNSL 3780
F+RV SEYC KFWS L+D CLRI N+IDWERS PDDI D S A+GI WQ FV +L
Sbjct: 1063 FIRVSMSEYCDPNKFWSNLVDSCLRIRNLIDWERSLPDDILDYSNAFGISSAWQSFVKNL 1122
Query: 3781 HSAISDTGKTILPEHLVVTANCLSATGEFIALNAKGLAEQRKAANVCSPFSQACFSNPSD 3960
HS+I DTGKTILPEHL+VTANCLSATGEF+ALNAKGL QRK ++ SPF+QA F NPSD
Sbjct: 1123 HSSIIDTGKTILPEHLIVTANCLSATGEFVALNAKGLVNQRKEIDIRSPFNQATFLNPSD 1182
Query: 3961 CLVKAAKMGQMDRLQGSLEALSWGQTPSVGTGCHFDIVYNGKGHEPAKPTDVYTLLSTHV 4140
VKAAK Q D L GS+EALSWGQTP +GTGC FD++Y GKGHE AK DVY LL +H
Sbjct: 1183 TFVKAAKACQTDDLVGSVEALSWGQTPRIGTGCQFDLIYKGKGHETAKNEDVYGLLISHD 1242
Query: 4141 ARTKPDDPMKQFSEKSIVSSH-FNTKTRKSLLTKMAS--QHFSEVGIRKISQRLKRMLKE 4311
R K + + S KS H NT+ KS L ++++ H S +GI+KISQ+LKR+LKE
Sbjct: 1243 GRAKSNVKERSLSMKSSNPLHGINTQQHKSWLERLSANMNHLSVLGIKKISQKLKRILKE 1302
Query: 4312 YPMNSKLSGEDKSTAIKALQFHPRWEDKIGTGVLDIKVGRHPDHNETCFFLVRTDGTEED 4491
YPM+ +LSGEDKSTA+ ALQFHPRW +KIG+G+ +IKVG HP+H +TCF L R+DGTEED
Sbjct: 1303 YPMDRQLSGEDKSTALTALQFHPRWPEKIGSGIQEIKVGLHPEHQQTCFILKRSDGTEED 1362
Query: 4492 FSYNKCIHHALEIIAPEK 4545
FSY KCI+HALE++AP K
Sbjct: 1363 FSYRKCINHALELVAPRK 1380
>emb|CDP09818.1| unnamed protein product [Coffea canephora]
Length = 1511
Score = 1531 bits (3965), Expect = 0.0
Identities = 810/1467 (55%), Positives = 1011/1467 (68%), Gaps = 26/1467 (1%)
Frame = +1
Query: 253 VSEGKMQRASMDNNLHIVQPVTSARLKAIHLNILSDEDAVKISASIIGTVNEVSDAALGL 432
+SE M RA++D H + RL +I NILS+ DAV+ S +IG +EV+D ALG
Sbjct: 32 ISELNMDRATIDIE-HSEKLEQKGRLMSISFNILSEADAVRKSVKLIGAASEVTDPALGF 90
Query: 433 PTTNATECGTCGAKNSKECEGHFGLINFPFTILNPYFMSEVAQILNKICPGCKSIRRGNV 612
P C TCGAK+ +ECEGHFGLINFPFTILNPYF+ EVAQILNKICP CKS+R V
Sbjct: 91 PNL-INHCNTCGAKDRRECEGHFGLINFPFTILNPYFLPEVAQILNKICPACKSVRVNKV 149
Query: 613 KKADSASSHHQPKYCRYCNGKSKYGYPRMKFKVSSKDVFAKTAIIAEVHEMFV-NKSSDW 789
K + S S C+YC+G+S+ YP MKFKV+SKDVFAKTAI AEV E N+SS+
Sbjct: 150 KSSGSTSVRDHSDTCKYCDGRSRDSYPPMKFKVTSKDVFAKTAISAEVSERSSSNRSSNG 209
Query: 790 VLASDYWDIIPKDPSQAHEGLPANKRVLSPAQVYNILKDVCPRTLEALVNRKNSIFLNSL 969
+ASDYWDIIP D Q L +NKR+LS AQVYNILKDV PR LE+ + RK+S+FLN
Sbjct: 210 SMASDYWDIIPSDAQQDLSNLGSNKRLLSHAQVYNILKDVDPRFLESFLKRKSSVFLNCF 269
Query: 970 LVTPNSHRVREFGQRITVDETTKMYRKLVDFRGTPNELSARVLDRYKLSKIRSEKLSNLQ 1149
L+TPN HRV E GQ IT D TK+Y+KL+DFRGT NELSARVLD K+SK+RSEK S +
Sbjct: 270 LLTPNCHRVTELGQHITFDTKTKLYKKLIDFRGTANELSARVLDLIKVSKVRSEKSSAIN 329
Query: 1150 KIYEKQXXXXXXXXXXGLKNIKELLLGKRTDHSFRMVVVGDPRIKVNEIGLPTQIAENVL 1329
+ GLK IKELLLGKRTDH+FRMVVVGDP I + EIG+P IAE +L
Sbjct: 330 SAFSVLGFKDSAVATSGLKYIKELLLGKRTDHAFRMVVVGDPNINLGEIGMPRHIAEKLL 389
Query: 1330 ISDHLNIWNWGKLEQCCEFMLKEKGNFSVLRNGQRVCIWSKDMLQKGDSICRHLLDGDIV 1509
+S+H+N WN+GKL+ +L G V R G+ + D L GD + R +LDGDIV
Sbjct: 390 VSEHVNKWNFGKLKDYVALILVGGGEICVRRGGRLEKLSIIDKLCCGDVLYRPMLDGDIV 449
Query: 1510 LINRPPSIHQHSLIALSVKILPINSVASINPLICSPLRGDFDGDCLHGYVPQSVNSRVEL 1689
LINRPPSIHQHS+++LSV+ILPINSV SINPLICSPLRGDFDGDCLHGYV QSV+SRVEL
Sbjct: 450 LINRPPSIHQHSMLSLSVRILPINSVLSINPLICSPLRGDFDGDCLHGYVSQSVDSRVEL 509
Query: 1690 TELVSLDKQLVNGQDGRNXXXXXXXXXXXXXXXXENGVLLNKTEIQQLQMFCPCIPVLPA 1869
ELV+L+KQL+NGQ GRN E+GV L+K ++QQLQMFC C +PA
Sbjct: 510 NELVALNKQLLNGQSGRNLLSLSHDSLTAAHLILEDGVTLDKFQMQQLQMFCSCPMPIPA 569
Query: 1870 IIKPTSRSSLWTGKQLFSLLLPPDFEFAYESNGVCIRKGELVSSSHGSAWLNDNSENIFQ 2049
I K WTGKQLFSLL+PP F++ +SNGV I KGE+V+SS GS+WL DN N+F
Sbjct: 570 ITKAPGNKCFWTGKQLFSLLIPPCFDYVSQSNGVQISKGEIVTSSSGSSWLRDNDGNLFH 629
Query: 2050 CLLRHNRDRALDFLNAGQEVLCEWLSRRGXXXXXXXXXXXXXTESRKNLLDEIHYGLEEA 2229
L+R ++ L FL A QEVLCEWL+ RG SR+N+++E+ GL+EA
Sbjct: 630 SLVRCCKNEVLGFLCAAQEVLCEWLAMRGLSVSLSDLYLTSDAYSRQNMIEEVSCGLQEA 689
Query: 2230 EKLSEVSLLMVGGNEDLLVESSDENEDMEKFLKERI-LIDQQTKAEFFQASLSASKSVLW 2406
E LS + LLM+G N+D LVES++ N+ F ++ + I QQ + +AS+SA K V
Sbjct: 690 ELLSSIRLLMMGSNQDFLVESTEANKRSVDFGEQHLSSIQQQNSSVLSEASVSAFKQVFL 749
Query: 2407 DMQNLVYKHCGSNNSFMAMLKAGSKGNLQKLFQHSMCLGLQHSLAPLSFPIPRELSCASW 2586
D+Q+LVY + +NSF++ML AGSKGNL KL QHSMCLGLQHS+ PLSF IP +LSCA+W
Sbjct: 750 DVQHLVYHYVSKDNSFLSMLMAGSKGNLLKLVQHSMCLGLQHSVVPLSFSIPHQLSCATW 809
Query: 2587 NDQKSYYSVHKFHGSQEISDSYIPCTMVANSYLAGLNPLECFVLSLTTRDSSFGGHADVS 2766
N K SVH+ HG+ + S SYIP ++ NS+L GLNP+ECFV SLTTRDSSF GHADVS
Sbjct: 810 NYHK--ISVHESHGTLDHSGSYIPFAVIENSFLTGLNPMECFVHSLTTRDSSFSGHADVS 867
Query: 2767 GTLTRRLMFFMRDLINGYDGTVRSCHGNHVVQFNYCTKD---------------LSDASM 2901
GTLTR+LMFFMRDL GYDGTVR+ +GN ++QF+Y ++D +S +
Sbjct: 868 GTLTRKLMFFMRDLSIGYDGTVRNSYGNQLIQFSYNSRDTLTPCNCNDESPSETISAYDV 927
Query: 2902 GGHPVGXXXXXXXXXXXXXXLDQPVSVLEPSPLLTLKKVLDCGVKKSTGSKSASLFLSGR 3081
GGHPVG LD P+S LE SPLL LKK+LDCGVKKS+G K+AS+FL +
Sbjct: 928 GGHPVGALAACAISEAAYSALDLPISALESSPLLNLKKILDCGVKKSSGDKTASIFLCKK 987
Query: 3082 LRRWANGFEYGALEVKDHLESLLFSDIVSEVKICFXXXXXXXXXXXPWACHFHINKEVAK 3261
L R G EYGALEVKDHLE L+ D+VS I + PW CHFHI+KE+ K
Sbjct: 988 LGRQTYGLEYGALEVKDHLERLMLEDVVSSSMISYSKEKCSRSQISPWICHFHISKEIIK 1047
Query: 3262 RRRLKLRSVIDALYMNNKFTGVKSKVILPKLHVTSKVCSEVDTRKKSDSVICISAA-LSE 3438
R+RL+++S+IDAL M + VK K+ LP L +T K CS + + D+ IC++ + L +
Sbjct: 1048 RKRLRVQSIIDALNMAWRSAKVKLKINLPDLQITGKACSLALKQNEKDTKICLTVSILEK 1107
Query: 3439 SLKGFSDLDILRDMVKPVLLQTVIKGFPEFKKVDILWKAEPNHPKSTKRPLGEPFLRVVT 3618
S K LDILR+MV P LL TVIKGFPEFKKVDI+WK N KS+K LG +LRV
Sbjct: 1108 SKKSSLRLDILRNMVMPFLLGTVIKGFPEFKKVDIMWKDCRNSSKSSKGSLGGVYLRVFM 1167
Query: 3619 SEYCQKTKFWSILMDKCLRISNIIDWERSHPDDIHDCSEAYGIDVGWQCFVNSLHSAISD 3798
SE C +TKFWS+L+D CLRI ++IDWERSHPDDIHD + AYGID F++SL+SAISD
Sbjct: 1168 SEKCDRTKFWSVLVDNCLRIRDLIDWERSHPDDIHDMAPAYGIDAAVNHFLSSLNSAISD 1227
Query: 3799 TGKTILPEHLVVTANCLSATGEFIALNAKGLAEQRKAANVCSPFSQACFSNPSDCLVKAA 3978
TGKTILPEHLV+TA+CLSATGEF+ALNAKGLA+QRK V SPF QACFS+P DC V+AA
Sbjct: 1228 TGKTILPEHLVLTADCLSATGEFVALNAKGLAQQRKETAVSSPFLQACFSSPGDCFVRAA 1287
Query: 3979 KMGQMDRLQGSLEALSWGQTPSVGTGCHFDIVYNGKGHEPAKPTDVYTLLSTHV---ART 4149
K G +D LQG+++AL+WG PS+GTG FDI+Y+GKGHEPAK DVY LL + V +
Sbjct: 1288 KTGIVDNLQGTVDALAWGMVPSIGTGARFDIIYSGKGHEPAKSIDVYDLLGSIVNLNQQV 1347
Query: 4150 KPDDPMKQFSEKSIVSSHF---NTKTRKSLLTK-MASQHFSEVGIRKISQRLKRMLKEYP 4317
K + + S KSIV F + T+ +L + + FS I+K+S LK ML +Y
Sbjct: 1348 KFPNKDYEMSGKSIVQHLFAYDDLATKGCILPRTLLRNFFSLKDIQKLSHSLKHMLNKYD 1407
Query: 4318 MNSKLSGEDKSTAIKALQFHPRWEDKIGTGVLDIKVGRHPDH-NETCFFLVRTDGTEEDF 4494
++ +LS DK+ + AL FHPR +KIG G +IKVG H ++ N CF LVR DGT DF
Sbjct: 1408 VDCQLSEIDKTIVMAALSFHPRSSEKIGIGAHEIKVGYHSEYDNSRCFVLVRKDGTVADF 1467
Query: 4495 SYNKCIHHALEIIAPEKASAYRSRKQN 4575
SY+KC+H+AL++IAP+ A Y S+ N
Sbjct: 1468 SYHKCVHNALQLIAPDWAKKYESKWLN 1494
>ref|XP_009797463.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
[Nicotiana sylvestris] gi|698503797|ref|XP_009797464.1|
PREDICTED: DNA-directed RNA polymerase IV subunit 1
isoform X1 [Nicotiana sylvestris]
gi|698503800|ref|XP_009797465.1| PREDICTED: DNA-directed
RNA polymerase IV subunit 1 isoform X1 [Nicotiana
sylvestris] gi|698503802|ref|XP_009797466.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 isoform X1
[Nicotiana sylvestris] gi|698503804|ref|XP_009797467.1|
PREDICTED: DNA-directed RNA polymerase IV subunit 1
isoform X1 [Nicotiana sylvestris]
Length = 1447
Score = 1501 bits (3885), Expect = 0.0
Identities = 799/1449 (55%), Positives = 999/1449 (68%), Gaps = 23/1449 (1%)
Frame = +1
Query: 283 MDNNLHIVQPVTSARLKAIHLNILSDEDAVKISASIIGTVNEVSDAALGLPTTNATECGT 462
M+++L I Q V S LK I NILS+ DA K++A +IG VNEV+D ALG P EC T
Sbjct: 1 MEHDL-IEQQVPSGTLKGIIFNILSETDAAKLAAKVIGVVNEVTDPALGFPNP-IFECST 58
Query: 463 CGAKNSKECEGHFGLINFPFTILNPYFMSEVAQILNKICPGCKSIRRGNVKKADSASSHH 642
CGAK+ K+CEGHFGLINFPFTILNPYF+SEVA+ILNK+CPGCKS+RR VK AD+ S+
Sbjct: 59 CGAKDGKKCEGHFGLINFPFTILNPYFISEVAKILNKVCPGCKSVRRDKVKGADTTSA-- 116
Query: 643 QPKYCRYCNGKSKYGYPRMKFKVSSKDVFAKTAIIAEVHEMFVNKSSDWVLASDYWDIIP 822
C YC+G + GYP MKFKVS KD+F +TAIIAEV E + ++S LASDYW+ IP
Sbjct: 117 ----CNYCDGILR-GYPPMKFKVSPKDMFGRTAIIAEVSEKKLQQTSGGSLASDYWNFIP 171
Query: 823 KDPSQ-AHEGLPANKRVLSPAQVYNILKDVCPRTLEALVNRKNSIFLNSLLVTPNSHRVR 999
D Q A K+VL+ AQVY+ILKDV P LE L+ RKNSIFL S L+TPNSHRV
Sbjct: 172 DDAQQDASLNSSKYKKVLTHAQVYSILKDVDPGFLEGLLRRKNSIFLKSCLLTPNSHRVT 231
Query: 1000 EFGQRITVDETTKMYRKLVDFRGTPNELSARVLDRYKLSKIRSEK-LSNLQKIYEKQXXX 1176
EFGQ + DE+ ++YRKL+DFRGT N+LS V +R K+SKIR+E+ L+N
Sbjct: 232 EFGQHMIFDESNRLYRKLIDFRGTANDLSMCVFNRIKVSKIRAERSLTN----------- 280
Query: 1177 XXXXXXXGLKNIKELLLGKRTDHSFRMVVVGDPRIKVNEIGLPTQIAENVLISDHLNIWN 1356
GLK +KEL+L KRT+H+FRMVVVGDP IK+ EIG+P +AE++ +++ L+ N
Sbjct: 281 DPNAPATGLKYVKELVLAKRTNHAFRMVVVGDPNIKLGEIGIPCHVAEDLHMAEPLSSRN 340
Query: 1357 WGKLEQCCEFMLKEKGNFSVLRNGQRVCIWSKDMLQKGDSICRHLLDGDIVLINRPPSIH 1536
W KL C+ M+ +KG V RNG V I D LQ+GD I R L+DGD+VLINRPPSIH
Sbjct: 341 WEKLSDHCDLMILQKGAIHVRRNGVLVRISVMDQLQRGDIIYRPLIDGDVVLINRPPSIH 400
Query: 1537 QHSLIALSVKILPINSVASINPLICSPLRGDFDGDCLHGYVPQSVNSRVELTELVSLDKQ 1716
QHSLIALSV+ILPI SV SINPL+CSP RGDFDGDCLHGYVPQS++SRVEL+ELV L++Q
Sbjct: 401 QHSLIALSVRILPIISVLSINPLVCSPFRGDFDGDCLHGYVPQSIDSRVELSELVGLNRQ 460
Query: 1717 LVNGQDGRNXXXXXXXXXXXXXXXXENGVLLNKTEIQQLQMFCPCIPVLPAIIKPTSRS- 1893
L++GQ G+N E GV L++ ++QQLQMFCP +PAI++ SR+
Sbjct: 461 LIDGQSGQNLLSLSHDSLTAAHLILEEGVFLDRFQMQQLQMFCPHQVGMPAIVRAPSRNR 520
Query: 1894 SLWTGKQLFSLLLPPDFEFAYESNGVCIRKGELVSSSHGSAWLNDNSENIFQCLLRHNRD 2073
S WTGKQLF L LP D + + SNGVCI GE+V+SS GS+WL D SEN+F L++H+
Sbjct: 521 SYWTGKQLFGLFLPSDLDCDFPSNGVCISDGEIVTSSGGSSWLRDASENLFYSLVKHHGG 580
Query: 2074 RALDFLNAGQEVLCEWLSRRGXXXXXXXXXXXXXTESRKNLLDEIHYGLEEAEKLSEVSL 2253
LD L A Q VLCEWLS RG SR+N++DE+ GL+EAE+LS V L
Sbjct: 581 DTLDLLYAAQAVLCEWLSMRGLSVSLSDLYISSDPYSRENMIDEVFCGLQEAERLSYVQL 640
Query: 2254 LMVGGNEDLLVESSDENEDMEKFLKERILIDQQTKAEFFQASLSASKSVLWDMQNLVYKH 2433
LM N D L S + ++ F E + I Q A QAS++A K V D+QNLVY +
Sbjct: 641 LMTRYNHDFLAGSLEVSQKAMGFDLEFMSIMLQKSASLSQASVTAFKQVFRDIQNLVYNY 700
Query: 2434 CGSNNSFMAMLKAGSKGNLQKLFQHSMCLGLQHSLAPLSFPIPRELSCASWNDQKSYYSV 2613
NSF+AMLKAGSKGNL KL QHSMCLGLQ SL PLSF +PR+LSC +WN+ K++
Sbjct: 701 ASKENSFLAMLKAGSKGNLLKLVQHSMCLGLQQSLVPLSFRMPRQLSCDAWNNHKAHLPF 760
Query: 2614 HKFHGSQEISDSYIPCTMVANSYLAGLNPLECFVLSLTTRDSSFGGHADVSGTLTRRLMF 2793
K H E SYIPC +V NS+LAGLNPLECFV SLTTRDSSF GHADVSGTL R+LMF
Sbjct: 761 EKAHNVPERPGSYIPCAVVENSFLAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKLMF 820
Query: 2794 FMRDLINGYDGTVRSCHGNHVVQFNYCTKDL-------SDASMGGHPVGXXXXXXXXXXX 2952
FMRDL GYDGTVR+ +GN +VQF+Y D + ++GGHPVG
Sbjct: 821 FMRDLYIGYDGTVRNAYGNQIVQFSYYNTDQIASTYNRASHAIGGHPVGSLAACAISEAA 880
Query: 2953 XXXLDQPVSVLEPSPLLTLKKVLDCGVKKSTGSKSASLFLSGRLRRWANGFEYGALEVKD 3132
LD P+ LEPSPLL LKK+L+ GVK ++ K+ASLFLS RL RWA+GFEYGALEVK
Sbjct: 881 YSALDLPIGALEPSPLLNLKKILEAGVKSNSSEKTASLFLSKRLGRWAHGFEYGALEVKG 940
Query: 3133 HLESLLFSDIVSEVKICFXXXXXXXXXXXPWACHFHINKEVAKRRRLKLRSVIDALYMNN 3312
HLE LL SDIVS V ICF PW CHFHI+KE K RRLKL+SVIDAL M
Sbjct: 941 HLERLLLSDIVSTVMICFSPGTYKSTHSSPWVCHFHIDKEYVKTRRLKLKSVIDALNMRY 1000
Query: 3313 KFTGVKSKVILPKLHVTSKVCSEVDTRKKSDSVICISAALSESLK-GFSDLDILRDMVKP 3489
+ T +++ + LP LH+T K CS V +K++S ICI+ A+ E+ K FS LD LRD+V P
Sbjct: 1001 RSTRMEAGIDLPSLHITCKDCS-VAEMQKANSKICIAVAVVETSKDSFSLLDTLRDLVIP 1059
Query: 3490 VLLQTVIKGFPEFKKVDILWKAEPNHPKSTKRPLGEPFLRVVTSEYCQKTKFWSILMDKC 3669
LL+TVIKGF FKKVDILW+ P+ KS++ GE +L+V SE C + FW+ L+D C
Sbjct: 1060 FLLETVIKGFSAFKKVDILWRELPSTSKSSRGSTGELYLQVFMSESCDRNNFWNALVDSC 1119
Query: 3670 LRISNIIDWERSHPDDIHDCSEAYGIDVGWQCFVNSLHSAISDTGKTILPEHLVVTANCL 3849
L I ++IDWE SHPD++HD + AYG+DV W+ F+ +L+SA+S+TGK ILPEHLV+ A+CL
Sbjct: 1120 LHIMDLIDWEWSHPDNVHDLTVAYGVDVAWKYFLRNLNSAVSETGKKILPEHLVLAADCL 1179
Query: 3850 SATGEFIALNAKGLAEQRKAANVCSPFSQACFSNPSDCLVKAAKMGQMDRLQGSLEALSW 4029
+ATGEF+ LN KGLA+QRK A V SPF QACFS+P D V+AAK D LQGSLEAL+W
Sbjct: 1180 TATGEFVPLNTKGLAQQRKCAGVISPFMQACFSHPGDSFVRAAKTELSDDLQGSLEALAW 1239
Query: 4030 GQTPSVGTGCHFDIVYNGKGHEPAKPTDVYTLLSTHVARTKPD-----DPMKQFSEKSIV 4194
G+TPS GTG FDI+Y+GKG+EPA PTDVY LL HV K D + ++K++
Sbjct: 1240 GKTPSTGTGFSFDIIYSGKGYEPAAPTDVYALLGNHVTSNKQQVKVTLDEDNETADKALA 1299
Query: 4195 S-----SHFNTKTRKSLLTKMASQHF-SEVGIRKISQRLKRMLKEYPMNSKLSGEDKSTA 4356
NTK KS + + F S I+K+SQ LK+ML +Y ++ +LS DKS
Sbjct: 1300 RRLCKLDDLNTKRCKSQWSIANLRSFLSFNDIKKLSQALKQMLSKYAIDRELSEADKSIV 1359
Query: 4357 IKALQFHPRWEDKIGTGVLDIKVGRHPDHNET-CFFLVRTDGTEEDFSYNKCIHHALEII 4533
+ AL FHPR +KIG G ++IK+G H ++ ++ CF LVRTDGT EDFSY KC+ HALE+I
Sbjct: 1360 MMALHFHPRRSEKIGKGAMEIKIGYHKEYEDSRCFMLVRTDGTVEDFSYRKCLQHALELI 1419
Query: 4534 APEKASAYR 4560
AP+KA Y+
Sbjct: 1420 APQKAKTYK 1428
>ref|XP_009593317.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
[Nicotiana tomentosiformis]
Length = 1447
Score = 1498 bits (3878), Expect = 0.0
Identities = 795/1449 (54%), Positives = 1001/1449 (69%), Gaps = 23/1449 (1%)
Frame = +1
Query: 283 MDNNLHIVQPVTSARLKAIHLNILSDEDAVKISASIIGTVNEVSDAALGLPTTNATECGT 462
M+++L I Q V S LK I NILS+ DA K++A +IG+VNEV+D ALG P EC T
Sbjct: 1 MEHDL-IEQQVPSGTLKGIIFNILSETDAAKLAAKVIGSVNEVTDPALGFPNP-IFECST 58
Query: 463 CGAKNSKECEGHFGLINFPFTILNPYFMSEVAQILNKICPGCKSIRRGNVKKADSASSHH 642
CGAK+ K+CEGHFGLINFPFTILNPYF+SEVA+ILNK+CPGCKS+RR VK AD+ S+
Sbjct: 59 CGAKDGKKCEGHFGLINFPFTILNPYFISEVAKILNKVCPGCKSVRRDKVKGADTTSA-- 116
Query: 643 QPKYCRYCNGKSKYGYPRMKFKVSSKDVFAKTAIIAEVHEMFVNKSSDWVLASDYWDIIP 822
C YC+G + GYP MKFKVS KD+F KTAI+AEV E + ++ LASDYW+ IP
Sbjct: 117 ----CNYCDGILR-GYPPMKFKVSPKDMFGKTAIMAEVSEKKLQQTCGGSLASDYWNFIP 171
Query: 823 KDPSQ-AHEGLPANKRVLSPAQVYNILKDVCPRTLEALVNRKNSIFLNSLLVTPNSHRVR 999
D Q A KRVL+ AQVY+ILKDV P LE L+ RKNSIFL S L+TPNSHRV
Sbjct: 172 DDAQQDASLNSSKYKRVLTHAQVYSILKDVDPGFLEGLLRRKNSIFLKSCLLTPNSHRVT 231
Query: 1000 EFGQRITVDETTKMYRKLVDFRGTPNELSARVLDRYKLSKIRSEK-LSNLQKIYEKQXXX 1176
EFGQ + DE+ ++YRKL+DFRGT N+LS V +R K+SKIR+E+ L+N
Sbjct: 232 EFGQHMIFDESNRLYRKLIDFRGTANDLSMCVFNRIKVSKIRAERSLTN----------- 280
Query: 1177 XXXXXXXGLKNIKELLLGKRTDHSFRMVVVGDPRIKVNEIGLPTQIAENVLISDHLNIWN 1356
GLK +KEL+L KRT+H+FRMVVVGDP IK+ EIG+P +AE++ +++ L+ N
Sbjct: 281 DPNAPATGLKYVKELVLAKRTNHAFRMVVVGDPNIKLGEIGIPCHVAEDLHMAEPLSSRN 340
Query: 1357 WGKLEQCCEFMLKEKGNFSVLRNGQRVCIWSKDMLQKGDSICRHLLDGDIVLINRPPSIH 1536
W KL C+ M+ +KG V RNG V I D LQ+GD I R L+DGD+VLINRPPSIH
Sbjct: 341 WEKLTDHCDLMILQKGAIHVRRNGVLVRISVMDQLQRGDIIYRPLIDGDVVLINRPPSIH 400
Query: 1537 QHSLIALSVKILPINSVASINPLICSPLRGDFDGDCLHGYVPQSVNSRVELTELVSLDKQ 1716
QHSLIALSV+ILPI SV SINPL+CSP RGDFDGDCLHGYVPQS++SRVEL+ELV L++Q
Sbjct: 401 QHSLIALSVRILPIISVLSINPLVCSPFRGDFDGDCLHGYVPQSIDSRVELSELVGLNRQ 460
Query: 1717 LVNGQDGRNXXXXXXXXXXXXXXXXENGVLLNKTEIQQLQMFCPCIPVLPAIIKPTSRS- 1893
L++GQ G+N E GV L++ ++QQLQMFCP +PAI++ SR+
Sbjct: 461 LIDGQSGQNLLSLSHDSLTAAHLVLEGGVFLDRFQVQQLQMFCPHQVGMPAIVRAPSRNR 520
Query: 1894 SLWTGKQLFSLLLPPDFEFAYESNGVCIRKGELVSSSHGSAWLNDNSENIFQCLLRHNRD 2073
S WTGKQLFSL LP D + + SNGVCI GE+V+SS GS+WL D SEN+F L++H+
Sbjct: 521 SYWTGKQLFSLFLPSDLDCDFPSNGVCISDGEIVTSSGGSSWLRDASENLFYSLVKHHGG 580
Query: 2074 RALDFLNAGQEVLCEWLSRRGXXXXXXXXXXXXXTESRKNLLDEIHYGLEEAEKLSEVSL 2253
LD L A Q VLCEWLS RG SR+N++DE+ GL+EAE+LS + L
Sbjct: 581 DTLDLLYAAQAVLCEWLSMRGLSVSLSDLYISSDPYSRENMIDEVFCGLQEAERLSYIQL 640
Query: 2254 LMVGGNEDLLVESSDENEDMEKFLKERILIDQQTKAEFFQASLSASKSVLWDMQNLVYKH 2433
LM N D L S + ++ F E + I QQ A QAS+S+ K V D+QNLVY +
Sbjct: 641 LMSRYNHDFLAGSLEVSQKAMGFNLEFMSIMQQKSASLSQASVSSFKHVFRDIQNLVYNY 700
Query: 2434 CGSNNSFMAMLKAGSKGNLQKLFQHSMCLGLQHSLAPLSFPIPRELSCASWNDQKSYYSV 2613
NSF+AMLKAGSKGNL KL QHSMCLGLQ SL PLSF +PR LSC +WN+ K++
Sbjct: 701 ASKENSFLAMLKAGSKGNLLKLVQHSMCLGLQQSLVPLSFRMPRRLSCDAWNNHKAHLPF 760
Query: 2614 HKFHGSQEISDSYIPCTMVANSYLAGLNPLECFVLSLTTRDSSFGGHADVSGTLTRRLMF 2793
K H E YIPC +V NS+LAGLNPLECFV SLTTRDSSF GHADVSGTL R+LMF
Sbjct: 761 EKAHNVPERPGPYIPCAVVENSFLAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKLMF 820
Query: 2794 FMRDLINGYDGTVRSCHGNHVVQFNYCTKDLSDAS-------MGGHPVGXXXXXXXXXXX 2952
FMRDL +GYDGTVR+ +GN +VQF+Y + D ++ +GGHPVG
Sbjct: 821 FMRDLYSGYDGTVRNAYGNQIVQFSYYSADQISSTYNRASHAIGGHPVGSLAACAISEAA 880
Query: 2953 XXXLDQPVSVLEPSPLLTLKKVLDCGVKKSTGSKSASLFLSGRLRRWANGFEYGALEVKD 3132
LD PV LEPSPLL LKK+L+ GVK ++ K+A+LFLS RL RWA+GFEYGA+EVK
Sbjct: 881 YSALDLPVGALEPSPLLNLKKILEAGVKSNSSEKTATLFLSRRLGRWAHGFEYGAIEVKG 940
Query: 3133 HLESLLFSDIVSEVKICFXXXXXXXXXXXPWACHFHINKEVAKRRRLKLRSVIDALYMNN 3312
HLE LL SDIVS V ICF PW CHFHI+KE K RRLKL+SVIDAL M
Sbjct: 941 HLERLLLSDIVSTVMICFSPETCKSTHSSPWVCHFHIDKEYVKTRRLKLKSVIDALNMRY 1000
Query: 3313 KFTGVKSKVILPKLHVTSKVCSEVDTRKKSDSVICISAALSESLK-GFSDLDILRDMVKP 3489
+ T +++ + LP LH+T K CS + +K++S ICI+ A+ E+ K FS LD LRD+V P
Sbjct: 1001 RSTRMEAGIDLPSLHITCKDCSAAE-MQKANSKICITVAVVETSKDSFSLLDTLRDLVIP 1059
Query: 3490 VLLQTVIKGFPEFKKVDILWKAEPNHPKSTKRPLGEPFLRVVTSEYCQKTKFWSILMDKC 3669
LL+TVIKGF FKKVDILW+ P+ KS++ GE +L+V SE C + FW+ L+D C
Sbjct: 1060 FLLETVIKGFSAFKKVDILWRELPSTSKSSRGSTGELYLQVFMSESCDRNNFWNALVDSC 1119
Query: 3670 LRISNIIDWERSHPDDIHDCSEAYGIDVGWQCFVNSLHSAISDTGKTILPEHLVVTANCL 3849
L I ++IDWE+SHPD++HD + AYG+DV W+ F+ +L+SA+S+TGK IL EHLV+ A+CL
Sbjct: 1120 LHIMDLIDWEQSHPDNVHDLTVAYGVDVAWKYFLRNLNSAVSETGKKILLEHLVLAADCL 1179
Query: 3850 SATGEFIALNAKGLAEQRKAANVCSPFSQACFSNPSDCLVKAAKMGQMDRLQGSLEALSW 4029
+ATGEF+ LN KGLA+QRK A V SPF QACFS+P D V+AAK D LQGSLEAL+W
Sbjct: 1180 TATGEFVPLNTKGLAQQRKCAGVISPFMQACFSHPGDSFVRAAKTELSDDLQGSLEALAW 1239
Query: 4030 GQTPSVGTGCHFDIVYNGKGHEPAKPTDVYTLLSTHVARTKPD-----DPMKQFSEKSIV 4194
G+TPS GTG FDI+Y+GKG+EPA PTDVY LL HV + D + ++K++
Sbjct: 1240 GKTPSTGTGFSFDIIYSGKGYEPAAPTDVYALLGNHVTSNRQQVKVTLDEDNETADKALA 1299
Query: 4195 S-----SHFNTKTRKSLLTKMASQHF-SEVGIRKISQRLKRMLKEYPMNSKLSGEDKSTA 4356
NTK KS + + F S I+K+SQ LK+ML +Y ++ +LS DKS
Sbjct: 1300 RRLCKLDDLNTKRCKSQWSIANLRSFLSFNDIKKLSQALKQMLSKYAIDRELSEADKSIV 1359
Query: 4357 IKALQFHPRWEDKIGTGVLDIKVGRHPDHNET-CFFLVRTDGTEEDFSYNKCIHHALEII 4533
+ AL FHPR +KIG G ++IK+G H ++ ++ CF LVRTDGT EDFSY KC+ HALE+I
Sbjct: 1360 MMALHFHPRRSEKIGKGAMEIKIGYHKEYEDSRCFMLVRTDGTVEDFSYRKCLQHALELI 1419
Query: 4534 APEKASAYR 4560
AP+KA Y+
Sbjct: 1420 APQKAKTYK 1428
>ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
[Solanum tuberosum] gi|971571222|ref|XP_015169636.1|
PREDICTED: DNA-directed RNA polymerase IV subunit 1
isoform X1 [Solanum tuberosum]
gi|971571225|ref|XP_015169637.1| PREDICTED: DNA-directed
RNA polymerase IV subunit 1 isoform X2 [Solanum
tuberosum]
Length = 1446
Score = 1477 bits (3824), Expect = 0.0
Identities = 790/1459 (54%), Positives = 1000/1459 (68%), Gaps = 33/1459 (2%)
Frame = +1
Query: 283 MDNNLHIVQPVTSARLKAIHLNILSDEDAVKISASIIGTVNEVSDAALGLPTTNATECGT 462
M+++ +I Q V L I+ +ILS+ DA K+SA +IG VNEV+D ALG P +C T
Sbjct: 1 MEHDRNIEQQVPEGILTGINFSILSETDAAKLSAKVIGAVNEVTDPALGFPNP-IFQCTT 59
Query: 463 CGAKNSKECEGHFGLINFPFTILNPYFMSEVAQILNKICPGCKSIRRGNVKKADSASSHH 642
CGA + K+CEGHFGL+NFP+TILNPYF+SEVAQIL KICPGCKS+RR VK +D S+
Sbjct: 60 CGANDGKKCEGHFGLVNFPYTILNPYFVSEVAQILKKICPGCKSVRRDKVKGSDRTSA-- 117
Query: 643 QPKYCRYCNGKSKYGYPRMKFKVSSKDVFAKTAIIAEVHEMFVNKSSDWV---LASDYWD 813
C+YC+G + GYP KFKVS KD+F +TAIIAEV+E + K LASDYWD
Sbjct: 118 ----CKYCDGVLR-GYPPTKFKVSPKDMFGRTAIIAEVNENLLKKVQQTTGVSLASDYWD 172
Query: 814 IIPKDPSQAHEGLPAN-KRVLSPAQVYNILKDVCPRTLEALVNRKNSIFLNSLLVTPNSH 990
IP D Q +N KRVLS AQVY+ILKD+ P LE L+ RKNSIFL S L+TPNSH
Sbjct: 173 FIPYDAQQEASVNSSNYKRVLSHAQVYSILKDIDPGFLEGLLKRKNSIFLKSCLLTPNSH 232
Query: 991 RVREFGQRITVDETTKMYRKLVDFRGTPNELSARVLDRYKLSKIRSEKLSNLQKIYEKQX 1170
RV EFGQ + DE+ ++YRKL+DFRGT N+LS VLDR K+SKIR+++
Sbjct: 233 RVTEFGQHMIFDESNRLYRKLIDFRGTANDLSMCVLDRIKVSKIRADR----------SV 282
Query: 1171 XXXXXXXXXGLKNIKELLLGKRTDHSFRMVVVGDPRIKVNEIGLPTQIAENVLISDHLNI 1350
GLK +KEL+L KRT+H+FRMVVVGDP I++ EIG+P +AEN+ +++ L++
Sbjct: 283 INDPNAPATGLKYVKELVLAKRTNHAFRMVVVGDPNIELGEIGIPCHVAENLHMAESLSL 342
Query: 1351 WNWGKLEQCCEFMLKEKGNFSVLRNGQRVCIWSKDMLQKGDSICRHLLDGDIVLINRPPS 1530
NW ++ C+ M+ ++G V RNG V I D LQ GD I R L+DGD+V+INRPPS
Sbjct: 343 RNWERMTDLCDLMILQRGGILVRRNGVLVRISVMDRLQNGDIIHRPLIDGDVVMINRPPS 402
Query: 1531 IHQHSLIALSVKILPINSVASINPLICSPLRGDFDGDCLHGYVPQSVNSRVELTELVSLD 1710
IHQHSLIALSV+ILPINSV SINPL+CSP RGDFDGDCLHGY+PQS++SR+EL+ELV+L
Sbjct: 403 IHQHSLIALSVRILPINSVLSINPLVCSPFRGDFDGDCLHGYIPQSIDSRIELSELVALK 462
Query: 1711 KQLVNGQDGRNXXXXXXXXXXXXXXXXENGVLLNKTEIQQLQMFCPCIPVLPAIIK-PTS 1887
+QL++GQ+G+N E GV L++ ++QQLQMFCP + AI+K P
Sbjct: 463 QQLLDGQNGQNLLSLSHDSLTAAHLILEPGVFLDRFQMQQLQMFCPRQLGMTAIVKAPPG 522
Query: 1888 RSSLWTGKQLFSLLLPPDFEFAYESNGVCIRKGELVSSSHGSAWLNDNSENIFQCLLRHN 2067
WTGKQLFSLLLP D E+ + SNGVCI +GE+V+SS GS+WL D S+N+F L++H+
Sbjct: 523 NLCYWTGKQLFSLLLPSDLEYVFPSNGVCISEGEIVTSSGGSSWLRDVSDNLFYSLVKHH 582
Query: 2068 RDRALDFLNAGQEVLCEWLSRRGXXXXXXXXXXXXXTESRKNLLDEIHYGLEEAEKLSEV 2247
LD L A Q VLCEWLS RG + SR+N++DE+ GL+EAE+LS +
Sbjct: 583 GGDTLDLLYAAQTVLCEWLSMRGLSVSLSDLYISSDSYSRENMIDEVCSGLQEAERLSYI 642
Query: 2248 SLLMVGGNEDLLVESSDENEDMEKFLKERILIDQQTKAEFFQASLSASKSVLWDMQNLVY 2427
LLM+ N+D L S +E+++ F E + I QQ A QAS SA K V D+QNLVY
Sbjct: 643 QLLMIKYNKDFLSGSLEESKNSMGFDFEFMSIMQQKSASLSQASASAFKKVFRDIQNLVY 702
Query: 2428 KHCGSNNSFMAMLKAGSKGNLQKLFQHSMCLGLQHSLAPLSFPIPRELSCASWNDQKSYY 2607
+ ++NS +AMLKAGSKGNL KL QHSMCLGLQ SL P+SF +PR+LSC +WN+ KS+
Sbjct: 703 NYASNDNSLLAMLKAGSKGNLLKLVQHSMCLGLQQSLVPVSFRMPRQLSCDAWNNHKSHL 762
Query: 2608 SVHKFHGSQEISDSYIPCTMVANSYLAGLNPLECFVLSLTTRDSSFGGHADVSGTLTRRL 2787
+ K H E SYIP +V +S+LAGLNPLECFV SLTTRDSSF GHADVSGTL R+L
Sbjct: 763 VIEKPHKVPECPGSYIPSAVVKSSFLAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKL 822
Query: 2788 MFFMRDLINGYDGTVRSCHGNHVVQFNY-------CTKDLSDA------SMGGHPVGXXX 2928
MFFMRDL GYDGTVR+ +GN +VQF+Y TK DA ++GGHPVG
Sbjct: 823 MFFMRDLYVGYDGTVRNAYGNQIVQFSYYEAEKIASTKGTGDALESHNHAIGGHPVGSLA 882
Query: 2929 XXXXXXXXXXXLDQPVSVLEPSPLLTLKKVLDCGVKKSTGSKSASLFLSGRLRRWANGFE 3108
LDQPVS LE SPLL LKK+L+ G +G K+AS+FLS RL RWA+GFE
Sbjct: 883 ACAISEAAYSALDQPVSALESSPLLNLKKILESGAGSRSGEKTASMFLSKRLGRWAHGFE 942
Query: 3109 YGALEVKDHLESLLFSDIVSEVKICFXXXXXXXXXXXPWACHFHINKEVAKRRRLKLRSV 3288
YGALEVK HLE LL S++VS V ICF PW CHFHI+KE K RRLKLRS+
Sbjct: 943 YGALEVKGHLERLLLSEVVSTVMICFSPETRKSTHNCPWVCHFHIDKENVKTRRLKLRSI 1002
Query: 3289 IDALYMNNKFTGVKSKVILPKLHVTSKVCSEVDTRKKSDSVICISAALSESLKGFSD-LD 3465
+DAL M + K LP LH+T K CS + RK+ S ICI+ ++ E+ K S LD
Sbjct: 1003 LDALNMRYRAATTKGGNDLPNLHITCKDCSVAEARKEK-SEICITVSVVETSKDPSSLLD 1061
Query: 3466 ILRDMVKPVLLQTVIKGFPEFKKVDILWKAEPNHPKSTKRPLGEPFLRVVTSEYCQKTKF 3645
LRD+V P LL+TVIKGF FKKVDILWK P+ KS++ GE +L+V SE C + KF
Sbjct: 1062 TLRDVVIPFLLETVIKGFSAFKKVDILWKELPSPSKSSRGSTGELYLQVFMSESCDRIKF 1121
Query: 3646 WSILMDKCLRISNIIDWERSHPDDIHDCSEAYGIDVGWQCFVNSLHSAISDTGKTILPEH 3825
W+ L+D CL+I ++IDWERS+PDD+HD + AYGIDV W+ F+ LHSA+S+TGK ILPEH
Sbjct: 1122 WNALVDSCLQIRDLIDWERSYPDDVHDLTVAYGIDVAWEYFLCKLHSAVSETGKKILPEH 1181
Query: 3826 LVVTANCLSATGEFIALNAKGLAEQRKAANVCSPFSQACFSNPSDCLVKAAKMGQMDRLQ 4005
LV+ A+ L+ATGEF+ L+AKGL QRKAA V SPF QACFSNP D V+AAKMG D LQ
Sbjct: 1182 LVLAADSLTATGEFVPLSAKGLTLQRKAAGVISPFMQACFSNPGDSFVRAAKMGLSDNLQ 1241
Query: 4006 GSLEALSWGQTPSVGTGCHFDIVYNGKGHEPAKPTDVYTLLSTHVARTKP--------DD 4161
GSLE+L+WG+TPS+GTG FDI+Y+GKG+EPA+P DVYTLL HV P D
Sbjct: 1242 GSLESLAWGKTPSIGTGSSFDIIYSGKGYEPAEPIDVYTLLQNHVTSGTPKVKVTLDEDG 1301
Query: 4162 PM--KQFSEKSIVSSHFNTKTRKS--LLTKMASQHFSEVGIRKISQRLKRMLKEYPMNSK 4329
M K + + N K+ KS +TK+ S S I+K+SQ LK+ML +Y ++ +
Sbjct: 1302 GMDGKSLARRLDRLDDLNKKSCKSEWSITKLRS-FISFNDIKKLSQSLKQMLSKYAIDRE 1360
Query: 4330 LSGEDKSTAIKALQFHPRWEDKIGTGV-LDIKVGRHPDHNET-CFFLVRTDGTEEDFSYN 4503
L+ DK A+ ALQFHPR +KIG G +IK+G H ++ ++ CF LVR+DG+ EDFSY
Sbjct: 1361 LNEADKCIAMMALQFHPRRNEKIGKGAPQEIKIGYHKEYEDSRCFMLVRSDGSVEDFSYR 1420
Query: 4504 KCIHHALEIIAPEKASAYR 4560
KC+ HALE+IAP+KA R
Sbjct: 1421 KCMQHALELIAPQKAKTSR 1439
>ref|XP_015085574.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Solanum
pennellii] gi|970048058|ref|XP_015085575.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Solanum
pennellii] gi|970048060|ref|XP_015085576.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Solanum
pennellii] gi|970048062|ref|XP_015085577.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Solanum
pennellii]
Length = 1446
Score = 1456 bits (3770), Expect = 0.0
Identities = 783/1467 (53%), Positives = 993/1467 (67%), Gaps = 41/1467 (2%)
Frame = +1
Query: 283 MDNNLHIVQPVTSARLKAIHLNILSDEDAVKISASIIGTVNEVSDAALGLPTTNATECGT 462
M+++ +I Q V L+ I+ +ILS+ DA K+SA +IG VNEV+D ALG P +C T
Sbjct: 1 MEHDRNIEQQVPDGILRGINFSILSETDAAKLSAKVIGAVNEVTDPALGFPNP-IFQCTT 59
Query: 463 CGAKNSKECEGHFGLINFPFTILNPYFMSEVAQILNKICPGCKSIRRGNVKKADSASSHH 642
CGA + K+CEGHFGL+NFP+TILNPYF+SEVAQIL KICPGCKS+RR VK +D S+
Sbjct: 60 CGANDGKKCEGHFGLVNFPYTILNPYFVSEVAQILKKICPGCKSVRRDKVKVSDRTSA-- 117
Query: 643 QPKYCRYCNGKSKYGYPRMKFKVSSKDVFAKTAIIAEVHEMF---VNKSSDWVLASDYWD 813
C+YC+G + GYP KFKVS KD+F +TAIIAEV+E V K++ LASDYWD
Sbjct: 118 ----CKYCDGVLR-GYPPTKFKVSPKDMFGRTAIIAEVNENLLKKVQKTTGVSLASDYWD 172
Query: 814 IIPKDPSQAHEGLPAN-KRVLSPAQVYNILKDVCPRTLEALVNRKNSIFLNSLLVTPNSH 990
IP D Q +N KRVLS AQVY+ILKD+ P LE L+ RKNSIFL S L+TPNSH
Sbjct: 173 FIPYDAQQEASVNSSNYKRVLSHAQVYSILKDIDPGFLEGLLRRKNSIFLKSCLLTPNSH 232
Query: 991 RVREFGQRITVDETTKMYRKLVDFRGTPNELSARVLDRYKLSKIRSEKLSNLQKIYEKQX 1170
RV EFGQ + DE+ ++YRKL+DFRGT N+LS VLDR K+SKIR+++
Sbjct: 233 RVTEFGQHMIFDESNRLYRKLIDFRGTANDLSMCVLDRIKVSKIRADR----------SV 282
Query: 1171 XXXXXXXXXGLKNIKELLLGKRTDHSFRMVVVGDPRIKVNEIGLPTQIAENVLISDHLNI 1350
GLK +KEL+L KRT+H+FRMVVVGDP I++ EIG+P +AEN+ +++ L++
Sbjct: 283 INDPNAPATGLKYVKELVLAKRTNHAFRMVVVGDPNIELGEIGIPCHVAENLHMAETLSL 342
Query: 1351 WNWGKLEQCCEFMLKEKGNFSVLRNGQRVCIWSKDMLQKGDSICRHLLDGDIVLINRPPS 1530
NW ++ C+ M+ ++G V RNG V I D LQKGD I R L+DGD+V+INRPPS
Sbjct: 343 RNWERMTDLCDLMILQRGGILVRRNGVLVRISVMDGLQKGDIIHRPLVDGDVVMINRPPS 402
Query: 1531 IHQHSLIALSVKILPINSVASINPLICSPLRGDFDGDCLHGYVPQSVNSRVELTELVSLD 1710
IHQHSLIALSV+ILPINSV SINPL+CSP RGDFDGDCLHGY+PQS++S +EL+ELV+L
Sbjct: 403 IHQHSLIALSVRILPINSVLSINPLVCSPFRGDFDGDCLHGYIPQSIDSTIELSELVALK 462
Query: 1711 KQLVNGQDGRNXXXXXXXXXXXXXXXXENGVLLNKTEIQQLQMFCPCIPVLPAIIK-PTS 1887
+QL++GQ+G+N E GV L++ ++QQLQMFCP + AI+K P
Sbjct: 463 QQLLDGQNGQNLLSLSHDSLTAAHLILEPGVFLDRFQMQQLQMFCPRQLGMTAIVKAPPG 522
Query: 1888 RSSLWTGKQLFSLLLPPDFEFAYESNGVCIRKGELVSSSHGSAWLNDNSENIFQCLLRHN 2067
WTGKQLFSLLLP D E+ + SNGVCI +GE+V+SS GS+WL D S+N+F L++HN
Sbjct: 523 NICYWTGKQLFSLLLPSDLEYVFPSNGVCISEGEIVTSSGGSSWLRDASDNLFYSLVKHN 582
Query: 2068 RDRALDFLNAGQEVLCEWLSRRGXXXXXXXXXXXXXTESRKNLLDEIHYGLEEAEKLSEV 2247
LD L A Q VLCEWLS RG + SR+N++DE+ GL+EAE+LS +
Sbjct: 583 GGDTLDLLYAAQTVLCEWLSMRGLSVSLSDLYISADSYSRENMIDEVCSGLQEAERLSYI 642
Query: 2248 SLLMVGGNEDLLVESSDENEDMEKFLKERILIDQQTKAEFFQASLSASKSVLWDMQNLVY 2427
LLM+ N+D L + +E+++ F E + I QQ A QAS SA K V D+QNLVY
Sbjct: 643 QLLMIKYNKDFLSGNLEESKNSLGFDFEFMSIMQQKSASLSQASASAFKKVFRDIQNLVY 702
Query: 2428 KHCGSNNSFMAMLKAGSKGNLQKLFQHSMCLGLQHSLAPLSFPIPRELSCASWNDQKSYY 2607
+ ++NS +AMLKAGSKGNL KL QHSMCLGLQ SL P+SF +PR+LSC +WN+ KS+
Sbjct: 703 NYASNDNSLLAMLKAGSKGNLLKLVQHSMCLGLQQSLVPVSFRMPRQLSCDAWNNHKSHL 762
Query: 2608 SVHKFHGSQEISDSYIPCTMVANSYLAGLNPLECFVLSLTTRDSSFGGHADVSGTLTRRL 2787
+ K H E SYIP +V NS+LAGLNPLECFV SLTTRDSSF GHADVSGTL R+L
Sbjct: 763 VIEKPHKVPECPGSYIPSAVVKNSFLAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKL 822
Query: 2788 MFFMRDLINGYDGTVRSCHGNHVVQFNY-------CTKDLSDA------SMGGHPVGXXX 2928
MFFMRDL GYDGTVR+ +GN +VQF+Y TK +A ++GGHPVG
Sbjct: 823 MFFMRDLYVGYDGTVRNAYGNQIVQFSYYEAEQIASTKVTGEALESHNHAIGGHPVGSLA 882
Query: 2929 XXXXXXXXXXXLDQPVSVLEPSPLLTLKKVLDCGVKKSTGSKSASLFLSGRLRRWANGFE 3108
LDQPVS LE SPLL LKK+L+ G TG K+AS+FLS RL RWA+GFE
Sbjct: 883 ACAISEAAYSALDQPVSALESSPLLNLKKILESGAGSRTGEKTASMFLSKRLGRWAHGFE 942
Query: 3109 YGALEVKDHLESLLFSDIVSEVKICFXXXXXXXXXXXPWACHFHINKEVAKRRRLKLRSV 3288
YGALEVK HLE LL S++VS V ICF PW CHFHI+KE K RRLKLRSV
Sbjct: 943 YGALEVKGHLERLLLSEVVSTVMICFSPETRKSTHNCPWVCHFHIDKENVKTRRLKLRSV 1002
Query: 3289 IDALYMNNKFTGVKSKVILPKLHVTSKVCSEVDTRKKSDSVICISAALSESLKGFSD-LD 3465
+DAL M + K+ LP LH+T K CS + +K+ S ICI+ ++ E+ K S LD
Sbjct: 1003 LDALNMRYRAATTKAGNDLPNLHITCKDCSVAEAQKEK-SEICITVSVVETSKDPSSLLD 1061
Query: 3466 ILRDMVKPVLLQTVIKGFPEFKKVDILWKAEPNHPKSTKRPLGEPFLRVVTSEYCQKTKF 3645
LRD+V P LL TVIKGF FKKVDILWK P+ KS++ GE +L+V SE C + KF
Sbjct: 1062 TLRDVVIPFLLDTVIKGFSAFKKVDILWKELPSPSKSSRGSTGELYLQVFMSESCDRIKF 1121
Query: 3646 WSILMDKCLRISNIIDWERSHPDDIHDCSEAYGIDVGWQCFVNSLHSAISDTGKTILPEH 3825
W+ L+D CL+I ++IDWERS+PDD+HD + AYGID+ W+ F+ LHSA+S+TGK ILPEH
Sbjct: 1122 WNALVDSCLQIRDLIDWERSYPDDVHDLTVAYGIDLAWEYFLCKLHSAVSETGKKILPEH 1181
Query: 3826 LVVTANCLSATGEFIALNAKGLAEQRKAANVCSPFSQACFSNPSDCLVKAAKMGQMDRLQ 4005
LV+ A+ L+ATGEF+ L+AKGL QRKAA V SPF QACF+NP D V+AAKMG D LQ
Sbjct: 1182 LVLAADSLTATGEFVPLSAKGLTLQRKAAGVVSPFMQACFTNPGDSFVRAAKMGLSDDLQ 1241
Query: 4006 GSLEALSWGQTPSVGTGCHFDIVYNGKGHEPAKPTDVYTLLSTHVARTKPD--------- 4158
GSLE+L+WG+TPS+GTG FDI+Y+GKG+E A+ +VYTLL V P+
Sbjct: 1242 GSLESLAWGKTPSIGTGSSFDIMYSGKGYELAEQINVYTLLRNLVTVDTPNVKVTLGKDG 1301
Query: 4159 -----------DPMKQFSEKSIVSSHFNTKTRKSLLTKMASQHFSEVGIRKISQRLKRML 4305
D + +KS S TK R +FS I+K+SQ LK+ML
Sbjct: 1302 GMDGTSLARRLDRLDDLDKKSCKSELSFTKLR---------SYFSFNDIKKLSQSLKQML 1352
Query: 4306 KEYPMNSKLSGEDKSTAIKALQFHPRWEDKIGTGV-LDIKVGRHPDH-NETCFFLVRTDG 4479
+Y + +L+ DK A+ ALQFHPR +KIG G +IK+G H ++ CF +VR+D
Sbjct: 1353 SKYDIGRELNEADKCLAMMALQFHPRRNEKIGKGAPKEIKIGYHQEYEGSRCFMVVRSDD 1412
Query: 4480 TEEDFSYNKCIHHALEIIAPEKASAYR 4560
T EDFSY KC+ HALE+IAP+KA R
Sbjct: 1413 TVEDFSYRKCMQHALELIAPQKAKTSR 1439
>ref|XP_004245657.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
[Solanum lycopersicum] gi|723724576|ref|XP_010325435.1|
PREDICTED: DNA-directed RNA polymerase IV subunit 1
isoform X1 [Solanum lycopersicum]
Length = 1446
Score = 1456 bits (3770), Expect = 0.0
Identities = 782/1467 (53%), Positives = 993/1467 (67%), Gaps = 41/1467 (2%)
Frame = +1
Query: 283 MDNNLHIVQPVTSARLKAIHLNILSDEDAVKISASIIGTVNEVSDAALGLPTTNATECGT 462
M+++ +I Q V L+ I+ +ILS+ DA K+SA +IG VNEV+D ALG P +C T
Sbjct: 1 MEHDRNIEQQVPDGILRGINFSILSETDAAKLSAKVIGAVNEVTDPALGFPNP-IFQCTT 59
Query: 463 CGAKNSKECEGHFGLINFPFTILNPYFMSEVAQILNKICPGCKSIRRGNVKKADSASSHH 642
CGA + K+CEGHFGL+NFP+TILNPYF+SEVAQIL KICPGCKS+RR VK +D S+
Sbjct: 60 CGANDGKKCEGHFGLVNFPYTILNPYFVSEVAQILKKICPGCKSVRRDKVKVSDRTSA-- 117
Query: 643 QPKYCRYCNGKSKYGYPRMKFKVSSKDVFAKTAIIAEVHEMF---VNKSSDWVLASDYWD 813
C+YC+G + GYP KFKVS KD+F +TAIIAEV+E V K++ LASDYWD
Sbjct: 118 ----CKYCDGVLR-GYPPTKFKVSPKDMFGRTAIIAEVNENLLKKVQKTTGVSLASDYWD 172
Query: 814 IIPKDPSQAHEGLPAN-KRVLSPAQVYNILKDVCPRTLEALVNRKNSIFLNSLLVTPNSH 990
IP D Q +N KRVLS AQVY+ILKD+ P LE L+ RKNSIFL S L+TPNSH
Sbjct: 173 FIPYDAQQEASVNSSNYKRVLSHAQVYSILKDIDPGFLEGLLRRKNSIFLKSCLLTPNSH 232
Query: 991 RVREFGQRITVDETTKMYRKLVDFRGTPNELSARVLDRYKLSKIRSEKLSNLQKIYEKQX 1170
RV EFGQ + DE+ ++YRKL+DFRGT N+LS VLDR K+SKIR+++
Sbjct: 233 RVTEFGQHMIFDESNRLYRKLIDFRGTANDLSMCVLDRIKVSKIRADR----------SV 282
Query: 1171 XXXXXXXXXGLKNIKELLLGKRTDHSFRMVVVGDPRIKVNEIGLPTQIAENVLISDHLNI 1350
GLK +KEL+L KRT+H+FRMVVVGDP I++ EIG+P +AEN+ +++ L++
Sbjct: 283 INDPNAPATGLKYVKELVLAKRTNHAFRMVVVGDPNIELGEIGIPCHVAENLHMAETLSL 342
Query: 1351 WNWGKLEQCCEFMLKEKGNFSVLRNGQRVCIWSKDMLQKGDSICRHLLDGDIVLINRPPS 1530
NW ++ C+ M+ ++G V RNG V I D LQKGD I R L+DGD+V+INRPPS
Sbjct: 343 RNWERMTDLCDLMILQRGGILVRRNGVLVRISVMDGLQKGDIIHRPLVDGDVVMINRPPS 402
Query: 1531 IHQHSLIALSVKILPINSVASINPLICSPLRGDFDGDCLHGYVPQSVNSRVELTELVSLD 1710
IHQHSLIALSV+ILPINSV SINPL+CSP RGDFDGDCLHGY+PQS++S +EL+ELV+L
Sbjct: 403 IHQHSLIALSVRILPINSVLSINPLVCSPFRGDFDGDCLHGYIPQSIDSTIELSELVALK 462
Query: 1711 KQLVNGQDGRNXXXXXXXXXXXXXXXXENGVLLNKTEIQQLQMFCPCIPVLPAIIK-PTS 1887
+QL++GQ+G+N E GV L++ ++QQLQMFCP + AI+K P
Sbjct: 463 QQLLDGQNGQNLLSLSHDSLTAAHLILEPGVFLDRFQMQQLQMFCPRQLGMTAIVKAPPG 522
Query: 1888 RSSLWTGKQLFSLLLPPDFEFAYESNGVCIRKGELVSSSHGSAWLNDNSENIFQCLLRHN 2067
WTGKQLFSLLLP D E+ + SNGVCI +GE+V+SS GS+WL D S+N+F L++HN
Sbjct: 523 NICYWTGKQLFSLLLPSDLEYVFPSNGVCISEGEIVTSSGGSSWLRDASDNLFYSLVKHN 582
Query: 2068 RDRALDFLNAGQEVLCEWLSRRGXXXXXXXXXXXXXTESRKNLLDEIHYGLEEAEKLSEV 2247
LD L A Q VLCEWLS RG + SR+N++DE+ GL+EAE+LS +
Sbjct: 583 GGDTLDLLYAAQTVLCEWLSMRGLSVSLSDLYISADSYSRENMIDEVCSGLQEAERLSYI 642
Query: 2248 SLLMVGGNEDLLVESSDENEDMEKFLKERILIDQQTKAEFFQASLSASKSVLWDMQNLVY 2427
LLM+ N+D L + +E+++ F E + I QQ A QAS SA K V D+QNLVY
Sbjct: 643 QLLMIKYNKDFLSGNLEESKNSMGFDFEFMSIMQQKSASLSQASASAFKKVFRDIQNLVY 702
Query: 2428 KHCGSNNSFMAMLKAGSKGNLQKLFQHSMCLGLQHSLAPLSFPIPRELSCASWNDQKSYY 2607
+ ++NS +AMLKAGSKGNL KL QH+MCLGLQ SL P+SF +PR+LSC +WN+ KS+
Sbjct: 703 NYASNDNSLLAMLKAGSKGNLLKLVQHNMCLGLQQSLVPVSFRMPRQLSCDAWNNHKSHL 762
Query: 2608 SVHKFHGSQEISDSYIPCTMVANSYLAGLNPLECFVLSLTTRDSSFGGHADVSGTLTRRL 2787
+ K H E SYIP +V +S+LAGLNPLECFV SLTTRDSSF GHADVSGTL R+L
Sbjct: 763 VIEKPHKVPECPGSYIPSAVVKSSFLAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKL 822
Query: 2788 MFFMRDLINGYDGTVRSCHGNHVVQFNY-------CTKDLSDA------SMGGHPVGXXX 2928
MFFMRDL GYDGTVR+ +GN +VQF+Y TK +A ++GGHPVG
Sbjct: 823 MFFMRDLYVGYDGTVRNAYGNQIVQFSYYEAEQIASTKVTGEALESHNHAIGGHPVGSLA 882
Query: 2929 XXXXXXXXXXXLDQPVSVLEPSPLLTLKKVLDCGVKKSTGSKSASLFLSGRLRRWANGFE 3108
LDQPVS LE SPLL LKK+L+ G TG K+AS+FLS RL RWA+GFE
Sbjct: 883 ACAISEAAYCALDQPVSALESSPLLNLKKILESGAGSRTGEKTASMFLSKRLGRWAHGFE 942
Query: 3109 YGALEVKDHLESLLFSDIVSEVKICFXXXXXXXXXXXPWACHFHINKEVAKRRRLKLRSV 3288
YGALEVK HLE LL S++VS V ICF PW CHFHI+KE K RRLKLRSV
Sbjct: 943 YGALEVKGHLERLLLSEVVSTVMICFSPETRKSTHNCPWVCHFHIDKENVKTRRLKLRSV 1002
Query: 3289 IDALYMNNKFTGVKSKVILPKLHVTSKVCSEVDTRKKSDSVICISAALSESLKGFSD-LD 3465
+DAL M + K+ LP LH+T K CS + +K+ S ICI+ ++ E+ K S LD
Sbjct: 1003 LDALNMRYRAATTKAGNDLPNLHITCKDCSVAEVQKEK-SEICITVSVVETSKDPSSLLD 1061
Query: 3466 ILRDMVKPVLLQTVIKGFPEFKKVDILWKAEPNHPKSTKRPLGEPFLRVVTSEYCQKTKF 3645
LRD+V P LL+TVIKGF FKKVDILWK P+ KS++ P GE +L+V SE C + KF
Sbjct: 1062 TLRDVVIPFLLETVIKGFSAFKKVDILWKELPSPSKSSRGPTGELYLQVFMSESCDRIKF 1121
Query: 3646 WSILMDKCLRISNIIDWERSHPDDIHDCSEAYGIDVGWQCFVNSLHSAISDTGKTILPEH 3825
W+ L+D CL+I ++IDWERS+PDD+HD + AYGIDV W+ F+ LHSA+S+TGK ILPEH
Sbjct: 1122 WNALVDSCLQIRDLIDWERSYPDDVHDLTVAYGIDVAWEYFLCKLHSAVSETGKKILPEH 1181
Query: 3826 LVVTANCLSATGEFIALNAKGLAEQRKAANVCSPFSQACFSNPSDCLVKAAKMGQMDRLQ 4005
LV+ A+ L+ TGEF+ L+AKGL QRKAA V SPF QACF+NP D V+AAKMG D LQ
Sbjct: 1182 LVLAADSLTTTGEFVPLSAKGLTLQRKAAGVVSPFMQACFTNPGDSFVRAAKMGLSDDLQ 1241
Query: 4006 GSLEALSWGQTPSVGTGCHFDIVYNGKGHEPAKPTDVYTLLSTHVARTKPD--------- 4158
GSLE+L+WG+TPS+GTG FDI+Y+GKG+E A+ +VYTLL V P+
Sbjct: 1242 GSLESLAWGKTPSIGTGSSFDIMYSGKGYELAEQINVYTLLRNLVTVDTPNVKVTLGKDG 1301
Query: 4159 -----------DPMKQFSEKSIVSSHFNTKTRKSLLTKMASQHFSEVGIRKISQRLKRML 4305
D + +KS S TK R +FS I+K+SQ LK+ML
Sbjct: 1302 GMDGMSLVRRLDRLDDLDKKSCKSELSFTKLR---------SYFSFNDIKKLSQSLKQML 1352
Query: 4306 KEYPMNSKLSGEDKSTAIKALQFHPRWEDKIGTGV-LDIKVGRHPD-HNETCFFLVRTDG 4479
+Y + +L+ DK A+ ALQFHPR +KIG G +IK+G H + CF +VR+D
Sbjct: 1353 SKYDIGRELNEADKCLAMMALQFHPRRNEKIGKGAPKEIKIGYHQEFEGSRCFMVVRSDD 1412
Query: 4480 TEEDFSYNKCIHHALEIIAPEKASAYR 4560
T EDFSY KC+ HALE+IAP+KA R
Sbjct: 1413 TVEDFSYRKCMQHALELIAPQKAKTSR 1439
>ref|XP_010661369.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2 [Vitis
vinifera]
Length = 1458
Score = 1400 bits (3623), Expect = 0.0
Identities = 757/1466 (51%), Positives = 964/1466 (65%), Gaps = 38/1466 (2%)
Frame = +1
Query: 283 MDNNLHIVQPVTSARLKAIHLNILSDEDAVKISASIIGTVNEVSDAALGLPTTNATECGT 462
MDN+ Q V S L I ++ ++ED KIS I VNE++D LG+P + +C T
Sbjct: 1 MDNDFLEEQQVPSGLLIGIKFDVSTEEDMEKISVMKIDAVNEITDPKLGVPNPSC-QCST 59
Query: 463 CGAKNSKECEGHFGLINFPFTILNPYFMSEVAQILNKICPGCKSIRRGN-VKKADSASSH 639
CGAK++K+CEGHFG+I FPFTIL+PYF++EV QILNKICPGCKS R+G VK ADS S
Sbjct: 60 CGAKDTKKCEGHFGVIKFPFTILHPYFLTEVVQILNKICPGCKSTRQGQWVKGADSGSRR 119
Query: 640 HQPKYCRYCNGKSKYGYPRMKFKVSSKDVFAKTAIIAEVHEMFVNK----SSDWVLASDY 807
+ K C+YC S YP MKFKVSSKD+F KTAII E++E K S VL DY
Sbjct: 120 LRSKGCKYCAANSNDWYPTMKFKVSSKDLFRKTAIIVEMNEKLPKKLQKKSFRPVLPLDY 179
Query: 808 WDIIPKDPSQAHEGLPANKRVLSPAQVYNILKDVCPRTLEALVNRKNSIFLNSLLVTPNS 987
WD IPKDP Q L N+RVLS AQV+ +LKD+ P ++ V+R +S FLN L VTPN+
Sbjct: 180 WDFIPKDPQQEENCLNPNRRVLSHAQVHYLLKDIDPGFIKEFVSRMDSFFLNCLPVTPNN 239
Query: 988 HRVREF------GQRITVDETTKMYRKLVDFRGTPNELSARVLDRYKLSKIRSEKLSNLQ 1149
HRV E GQ + D+ ++ Y+KLVDFRGT NELS RVLD K SK+RSEK ++
Sbjct: 240 HRVTEITHALSNGQTLIFDQHSRAYKKLVDFRGTANELSCRVLDCLKTSKLRSEKSTSKD 299
Query: 1150 KIYEKQXXXXXXXXXXGLKNIKELLLGKRTDHSFRMVVVGDPRIKVNEIGLPTQIAENVL 1329
+ GLK IKE+LLGKRT+HSFRM+VVGDP+++++EIG+P IAE +L
Sbjct: 300 SASKMS----------GLKWIKEVLLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELL 349
Query: 1330 ISDHLNIWNWGKLEQCCEFMLKEKGNFSVLRNGQRVCIWSKDMLQKGDSICRHLLDGDIV 1509
IS+HLN WNW K+ C L EKG V R G + + Q GD I R L DGDIV
Sbjct: 350 ISEHLNSWNWEKVTNGCNLRLLEKGQTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDGDIV 409
Query: 1510 LINRPPSIHQHSLIALSVKILPINSVASINPLICSPLRGDFDGDCLHGYVPQSVNSRVEL 1689
LINRPPSIHQHS+IALSVK+LP+NSV SINPL CSP RGDFDGDCLHGY+PQSV+SRVEL
Sbjct: 410 LINRPPSIHQHSVIALSVKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVEL 469
Query: 1690 TELVSLDKQLVNGQDGRNXXXXXXXXXXXXXXXXENGVLLNKTEIQQLQMFCPCIPVLPA 1869
+ELV+L++QL+N Q GRN E+GVLLN ++QQL+MFCP PA
Sbjct: 470 SELVALNRQLINRQSGRNLLSLSQDSLSAAHLVMEDGVLLNLFQMQQLEMFCPYQLQSPA 529
Query: 1870 IIK-PTSRSSLWTGKQLFSLLLPPDFEFAYESNGVCIRKGELVSSSHGSAWLNDNSENIF 2046
IIK P + +WTGKQLFS+LLPP F + + NGV I GEL+SSS GSAWL D N+F
Sbjct: 530 IIKAPLLDTQVWTGKQLFSMLLPPGFNYVFPLNGVRISDGELISSSDGSAWLRDIDGNLF 589
Query: 2047 QCLLRHNRDRALDFLNAGQEVLCEWLSRRGXXXXXXXXXXXXXTESRKNLLDEIHYGLEE 2226
L++ + +ALDFL A QEVLCEWLS RG + SRKN++DE+ GL
Sbjct: 590 SSLVKDCQGKALDFLYAAQEVLCEWLSMRGLSVSLSDIYLSSDSISRKNMIDEVFCGLLV 649
Query: 2227 AEKLSEVSLLMVGGNEDLLVESSDENEDMEKFLKERILIDQQTKAEFFQASLSASKSVLW 2406
AE+ L+V +++ L+ S + N++ + + ++Q A Q+S+ A K
Sbjct: 650 AEQTCHFKQLLVDSSQNFLIGSGENNQNGVVPDVQSLWYERQGSAALCQSSVCAFKQKFR 709
Query: 2407 DMQNLVYKHCGSNNSFMAMLKAGSKGNLQKLFQHSMCLGLQHSLAPLSFPIPRELSCASW 2586
D+QNLVY++ +NS +AMLKAGSKGNL KL Q +CLGLQHSL PLSF IP +LSCA+W
Sbjct: 710 DIQNLVYQYANKDNSLLAMLKAGSKGNLLKLVQQGLCLGLQHSLVPLSFKIPHQLSCAAW 769
Query: 2587 NDQKSYYSVHKFHGSQEISDSYIPCTMVANSYLAGLNPLECFVLSLTTRDSSFGGHADVS 2766
N QK + + + E ++SYIP +V NS+L GLNPLECFV S+T+RDSSF +AD+
Sbjct: 770 NKQKVPGLIQ--NDTSEYAESYIPYAVVENSFLMGLNPLECFVHSVTSRDSSFSDNADLP 827
Query: 2767 GTLTRRLMFFMRDLINGYDGTVRSCHGNHVVQFNYCTKDLSDAS-----------MGGHP 2913
GTLTRRLMFFMRDL YDGTVR+ +GN +VQF+Y + S S MGG P
Sbjct: 828 GTLTRRLMFFMRDLYIAYDGTVRNAYGNQLVQFSYNIEHTSTPSDGINEDTCAYDMGGQP 887
Query: 2914 VGXXXXXXXXXXXXXXLDQPVSVLEPSPLLTLKKVLDCGVKKSTGSKSASLFLSGRLRRW 3093
VG LDQP+S+LEPSPLL LK+VL+CG++KST ++ SLFLS +L +
Sbjct: 888 VGSISACAISEAAYSALDQPISLLEPSPLLNLKRVLECGLRKSTADRTVSLFLSKKLEKR 947
Query: 3094 ANGFEYGALEVKDHLESLLFSDIVSEVKICFXXXXXXXXXXXPWACHFHINKEVAKRRRL 3273
+GFEYGALEVK+HLE LLFSDIVS V I F PW CHFH+ +E+AK+R L
Sbjct: 948 KHGFEYGALEVKNHLEKLLFSDIVSTVMIVFSPQNGSKTHFSPWVCHFHVCEEIAKKRSL 1007
Query: 3274 KLRSVIDALYMNNKFTGVKSKVILPKLHVTSKVCSEVDTRKKSDSVICISAALSESLKGF 3453
K S+IDALYM +SK+ LP L +TSK C VD K+ CI+ ++ S K
Sbjct: 1008 KPHSIIDALYMKCNSARAESKINLPDLQITSKDCF-VDMEKEDSDCFCITVSIVNSKKSC 1066
Query: 3454 SDLDILRDMVKPVLLQTVIKGFPEFKKVDILWKAEPNHPKSTKRPLGEPFLRVVTSEYCQ 3633
LD +RD+V P LL V+KG + KKVDILW P+ K G +LRV S C
Sbjct: 1067 IQLDTVRDLVIPFLLGAVVKGLLDVKKVDILWNDNPD-SDVLKSSSGRLYLRVYVSGDCG 1125
Query: 3634 KTKFWSILMDKCLRISNIIDWERSHPDDIHDCSEAYGIDVGWQCFVNSLHSAISDTGKTI 3813
K FW +LMD CL+I ++IDWERSHPD+IHD YGID GW+ F+NSL SAISD GKT+
Sbjct: 1126 KKNFWGVLMDACLQIMDMIDWERSHPDNIHDIFVVYGIDAGWKYFLNSLKSAISDIGKTV 1185
Query: 3814 LPEHLVVTANCLSATGEFIALNAKGLAEQRKAANVCSPFSQACFSNPSDCLVKAAKMGQM 3993
LPEHL++ A+CLSATGEF+ LNAKG+A Q++ ++ SPF Q CFS+P C +KA K
Sbjct: 1186 LPEHLLLVASCLSATGEFVGLNAKGMARQKELTSISSPFMQGCFSSPGSCFIKAGKRAVA 1245
Query: 3994 DRLQGSLEALSWGQTPSVGTGCHFDIVYNGKGHEPAKPTDVYTLL----STHVARTKPDD 4161
D L GSL+AL+WG+ PSVG+G HFDI+Y+ KGHE A+P D+Y LL S H K
Sbjct: 1246 DNLHGSLDALAWGKIPSVGSGGHFDILYSAKGHELARPEDIYKLLGSQTSCHEQNLKVKV 1305
Query: 4162 PM-------KQFSEKSIVSSHFNTKTRKSL--LTKMASQHFSEVG-IRKISQRLKRMLKE 4311
P+ K ++ + +K KSL ++K + F + I+K+S+RLK +L++
Sbjct: 1306 PITCYQTTTKCGAQLVYANGDSASKGCKSLEKISKSVLRSFLSLNDIQKLSRRLKFILQK 1365
Query: 4312 YPMNSKLSGEDKSTAIKALQFHPRWEDKIGTGVLDIKVGRHPD-HNETCFFLVRTDGTEE 4488
YP+N +LS DK+T + AL FHPR ++KIG G +IKV H HN CF LVRTDGTEE
Sbjct: 1366 YPINHQLSEIDKTTLMMALYFHPRRDEKIGPGAQNIKVRYHSKYHNTRCFSLVRTDGTEE 1425
Query: 4489 DFSYNKCIHHALEIIAPEKASAYRSR 4566
DFSY+KC+H ALEII P +A +Y+SR
Sbjct: 1426 DFSYHKCVHGALEIIDPRRARSYQSR 1451
>ref|XP_010661365.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1 [Vitis
vinifera]
Length = 1460
Score = 1394 bits (3607), Expect = 0.0
Identities = 756/1468 (51%), Positives = 964/1468 (65%), Gaps = 40/1468 (2%)
Frame = +1
Query: 283 MDNNLHIVQPVTSARLKAIHLNILSDEDAVKISASIIGTVNEVSDAALGLPTTNATECGT 462
MDN+ Q V S L I ++ ++ED KIS I VNE++D LG+P + +C T
Sbjct: 1 MDNDFLEEQQVPSGLLIGIKFDVSTEEDMEKISVMKIDAVNEITDPKLGVPNPSC-QCST 59
Query: 463 CGAKNSKECEGHFGLINFPFTILNPYFMSEVAQILNKICPGCKSIRRGN-VKKADSASSH 639
CGAK++K+CEGHFG+I FPFTIL+PYF++EV QILNKICPGCKS R+G VK ADS S
Sbjct: 60 CGAKDTKKCEGHFGVIKFPFTILHPYFLTEVVQILNKICPGCKSTRQGQWVKGADSGSRR 119
Query: 640 HQPKYCRYCNGKSKYGYPRMKFKVSSKDVFAKTAIIAEVHEMFVNK----SSDWVLASDY 807
+ K C+YC S YP MKFKVSSKD+F KTAII E++E K S VL DY
Sbjct: 120 LRSKGCKYCAANSNDWYPTMKFKVSSKDLFRKTAIIVEMNEKLPKKLQKKSFRPVLPLDY 179
Query: 808 WDIIPKDPSQAHEGLPANKRVLSPAQVYNILKDVCPRTLEALVNRKNSIFLNSLLVTPNS 987
WD IPKDP Q L N+RVLS AQV+ +LKD+ P ++ V+R +S FLN L VTPN+
Sbjct: 180 WDFIPKDPQQEENCLNPNRRVLSHAQVHYLLKDIDPGFIKEFVSRMDSFFLNCLPVTPNN 239
Query: 988 HRVREF------GQRITVDETTKMYRKLVDFRGTPNELSARVLDRYKLSKIRSEKLSNLQ 1149
HRV E GQ + D+ ++ Y+KLVDFRGT NELS RVLD K SK+RSEK ++
Sbjct: 240 HRVTEITHALSNGQTLIFDQHSRAYKKLVDFRGTANELSCRVLDCLKTSKLRSEKSTSKD 299
Query: 1150 KIYEKQXXXXXXXXXXGLKNIKELLLGKRTDHSFRMVVVGDPRIKVNEIGLPTQIAENVL 1329
+ GLK IKE+LLGKRT+HSFRM+VVGDP+++++EIG+P IAE +L
Sbjct: 300 SASKMS----------GLKWIKEVLLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELL 349
Query: 1330 ISDHLNIWNWGKLEQCCEFMLKEKGNFSVLRNGQRVCIWSKDMLQKGDSICRHLLDGDIV 1509
IS+HLN WNW K+ C L EKG V R G + + Q GD I R L DGDIV
Sbjct: 350 ISEHLNSWNWEKVTNGCNLRLLEKGQTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDGDIV 409
Query: 1510 LINRPPSIHQHSLIALSVKILPINSVASINPLICSPLRGDFDGDCLHGYVPQSVNSRVEL 1689
LINRPPSIHQHS+IALSVK+LP+NSV SINPL CSP RGDFDGDCLHGY+PQSV+SRVEL
Sbjct: 410 LINRPPSIHQHSVIALSVKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVEL 469
Query: 1690 TELVSLDKQLVNGQDGRNXXXXXXXXXXXXXXXXENGVLLNKTEIQQLQMFCPCIPVLPA 1869
+ELV+L++QL+N Q GRN E+GVLLN ++QQL+MFCP PA
Sbjct: 470 SELVALNRQLINRQSGRNLLSLSQDSLSAAHLVMEDGVLLNLFQMQQLEMFCPYQLQSPA 529
Query: 1870 IIK-PTSRSSLWTGKQLFSLLLPPDFEFAYESNGVCIRKGELVSSSHGSAWLNDNSENIF 2046
IIK P + +WTGKQLFS+LLPP F + + NGV I GEL+SSS GSAWL D N+F
Sbjct: 530 IIKAPLLDTQVWTGKQLFSMLLPPGFNYVFPLNGVRISDGELISSSDGSAWLRDIDGNLF 589
Query: 2047 QCLLRHNRDRALDFLNAGQEVLCEWLSRRGXXXXXXXXXXXXXTESRKNLLDEIHYGLEE 2226
L++ + +ALDFL A QEVLCEWLS RG + SRKN++DE+ GL
Sbjct: 590 SSLVKDCQGKALDFLYAAQEVLCEWLSMRGLSVSLSDIYLSSDSISRKNMIDEVFCGLLV 649
Query: 2227 AEKLSEVSLLMVGGNEDLLVESSDENEDMEKFLKERILIDQQTKAEFFQASLSASKSVLW 2406
AE+ L+V +++ L+ S + N++ + + ++Q A Q+S+ A K
Sbjct: 650 AEQTCHFKQLLVDSSQNFLIGSGENNQNGVVPDVQSLWYERQGSAALCQSSVCAFKQKFR 709
Query: 2407 DMQNLVYKHCGSNNSFMAMLKAGSKGNLQKLFQHSMCLGLQHSLAPLSFPIPRELSCASW 2586
D+QNLVY++ +NS +AMLKAGSKGNL KL Q +CLGLQHSL PLSF IP +LSCA+W
Sbjct: 710 DIQNLVYQYANKDNSLLAMLKAGSKGNLLKLVQQGLCLGLQHSLVPLSFKIPHQLSCAAW 769
Query: 2587 NDQKSYYSVHKFHGSQEISDSYIPCTMVANSYLAGLNPLECFVLSLTTRDSSFGGHADVS 2766
N QK + + + E ++SYIP +V NS+L GLNPLECFV S+T+RDSSF +AD+
Sbjct: 770 NKQKVPGLIQ--NDTSEYAESYIPYAVVENSFLMGLNPLECFVHSVTSRDSSFSDNADLP 827
Query: 2767 GTLTRRLMFFMRDLINGYDGTVRSCHGNHVVQFNYCTKDLSDAS-----------MGGHP 2913
GTLTRRLMFFMRDL YDGTVR+ +GN +VQF+Y + S S MGG P
Sbjct: 828 GTLTRRLMFFMRDLYIAYDGTVRNAYGNQLVQFSYNIEHTSTPSDGINEDTCAYDMGGQP 887
Query: 2914 VGXXXXXXXXXXXXXXLDQPVSVLEPSPLLTLKKVLDCGVKKSTGSKSASLFLSGRLRRW 3093
VG LDQP+S+LEPSPLL LK+VL+CG++KST ++ SLFLS +L +
Sbjct: 888 VGSISACAISEAAYSALDQPISLLEPSPLLNLKRVLECGLRKSTADRTVSLFLSKKLEKR 947
Query: 3094 ANGFEYGALEVKDHLESLLFSDIVSEVKICFXXXXXXXXXXXPWACHFHINKEVAKRRRL 3273
+GFEYGALEVK+HLE LLFSDIVS V I F PW CHFH+ +E+AK+R L
Sbjct: 948 KHGFEYGALEVKNHLEKLLFSDIVSTVMIVFSPQNGSKTHFSPWVCHFHVCEEIAKKRSL 1007
Query: 3274 KLRSVIDALYMNNKFTGVKSKVILPKLHVTS--KVCSEVDTRKKSDSVICISAALSESLK 3447
K S+IDALYM +SK+ LP L +TS + C VD K+ CI+ ++ S K
Sbjct: 1008 KPHSIIDALYMKCNSARAESKINLPDLQITSNGRDCF-VDMEKEDSDCFCITVSIVNSKK 1066
Query: 3448 GFSDLDILRDMVKPVLLQTVIKGFPEFKKVDILWKAEPNHPKSTKRPLGEPFLRVVTSEY 3627
LD +RD+V P LL V+KG + KKVDILW P+ K G +LRV S
Sbjct: 1067 SCIQLDTVRDLVIPFLLGAVVKGLLDVKKVDILWNDNPD-SDVLKSSSGRLYLRVYVSGD 1125
Query: 3628 CQKTKFWSILMDKCLRISNIIDWERSHPDDIHDCSEAYGIDVGWQCFVNSLHSAISDTGK 3807
C K FW +LMD CL+I ++IDWERSHPD+IHD YGID GW+ F+NSL SAISD GK
Sbjct: 1126 CGKKNFWGVLMDACLQIMDMIDWERSHPDNIHDIFVVYGIDAGWKYFLNSLKSAISDIGK 1185
Query: 3808 TILPEHLVVTANCLSATGEFIALNAKGLAEQRKAANVCSPFSQACFSNPSDCLVKAAKMG 3987
T+LPEHL++ A+CLSATGEF+ LNAKG+A Q++ ++ SPF Q CFS+P C +KA K
Sbjct: 1186 TVLPEHLLLVASCLSATGEFVGLNAKGMARQKELTSISSPFMQGCFSSPGSCFIKAGKRA 1245
Query: 3988 QMDRLQGSLEALSWGQTPSVGTGCHFDIVYNGKGHEPAKPTDVYTLL----STHVARTKP 4155
D L GSL+AL+WG+ PSVG+G HFDI+Y+ KGHE A+P D+Y LL S H K
Sbjct: 1246 VADNLHGSLDALAWGKIPSVGSGGHFDILYSAKGHELARPEDIYKLLGSQTSCHEQNLKV 1305
Query: 4156 DDPM-------KQFSEKSIVSSHFNTKTRKSL--LTKMASQHFSEVG-IRKISQRLKRML 4305
P+ K ++ + +K KSL ++K + F + I+K+S+RLK +L
Sbjct: 1306 KVPITCYQTTTKCGAQLVYANGDSASKGCKSLEKISKSVLRSFLSLNDIQKLSRRLKFIL 1365
Query: 4306 KEYPMNSKLSGEDKSTAIKALQFHPRWEDKIGTGVLDIKVGRHPD-HNETCFFLVRTDGT 4482
++YP+N +LS DK+T + AL FHPR ++KIG G +IKV H HN CF LVRTDGT
Sbjct: 1366 QKYPINHQLSEIDKTTLMMALYFHPRRDEKIGPGAQNIKVRYHSKYHNTRCFSLVRTDGT 1425
Query: 4483 EEDFSYNKCIHHALEIIAPEKASAYRSR 4566
EEDFSY+KC+H ALEII P +A +Y+SR
Sbjct: 1426 EEDFSYHKCVHGALEIIDPRRARSYQSR 1453
>gb|AAY89361.1| RNA polymerase IV largest subunit [Antirrhinum majus]
Length = 1112
Score = 1359 bits (3517), Expect = 0.0
Identities = 691/1106 (62%), Positives = 837/1106 (75%), Gaps = 18/1106 (1%)
Frame = +1
Query: 1249 FRMVVVGDPRIKVNEIGLPTQIAENVLISDHLNIWNWGKLEQCCEFMLKEKGNFSVLRNG 1428
FR VVVGDPRI+V+EIGLP +IA+N+L+SD++ +WNW KLE CC+ ML+ G FSV R+G
Sbjct: 1 FRTVVVGDPRIRVDEIGLPIEIAKNMLVSDNIYLWNWDKLESCCDLMLRRNGQFSVTRDG 60
Query: 1429 QRVCIWSKDMLQKGDSICRHLLDGDIVLINRPPSIHQHSLIALSVKILPINSVASINPLI 1608
Q+ C+ S DML+ GDSI R L+DGDIVLINRPPSIHQHSLIALSVKILPINSV SINPL
Sbjct: 61 QKTCVRSADMLRTGDSIYRPLIDGDIVLINRPPSIHQHSLIALSVKILPINSVVSINPLT 120
Query: 1609 CSPLRGDFDGDCLHGYVPQSVNSRVELTELVSLDKQLVNGQDGRNXXXXXXXXXXXXXXX 1788
CSPLRGDFDGDCLHGYVPQSVN+RVEL ELV+L+KQLVNGQ G+N
Sbjct: 121 CSPLRGDFDGDCLHGYVPQSVNTRVELKELVTLNKQLVNGQSGQNLLSLSQDSLTAAHLI 180
Query: 1789 XENGVLLNKTEIQQLQMFCPCIPVLPAIIKPTSR-SSLWTGKQLFSLLLPPDFEFAYESN 1965
++GV LNK E+QQLQMF IP+LPAII+ TSR +S WTGKQLFS LLP DFEF+ SN
Sbjct: 181 SQDGVFLNKPEMQQLQMFSAWIPMLPAIIQSTSRETSFWTGKQLFSQLLPLDFEFSNASN 240
Query: 1966 GVCIRKGELVSSSHGSAWLNDNSENIFQCLLRHNRDRALDFLNAGQEVLCEWLSRRGXXX 2145
GV I+ GELVS S GS+WL D+ EN+FQCLLRH ++ LD L+A QEVLCEWLSRRG
Sbjct: 241 GVGIKHGELVSFSDGSSWLRDSGENLFQCLLRHCPEKTLDILHAAQEVLCEWLSRRGLSV 300
Query: 2146 XXXXXXXXXXTESRKNLLDEIHYGLEEAEKLSEVSLLMVGGNEDLLVESSDENEDMEKFL 2325
+SRKNLLD+I GLEEAEK+S++SLLMVG N+ L+E+S+E+EDM K
Sbjct: 301 SLSDLCLSSDPQSRKNLLDDIACGLEEAEKMSDISLLMVGHNQRFLIENSEEDEDMLKS- 359
Query: 2326 KERILIDQQTKAEFFQASLSASKSVLWDMQNLVYKHCGSNNSFMAMLKAGSKGNLQKLFQ 2505
KE + + QQT AE QASL ASKSV DMQNL+Y + G NS +AMLKAGSKGNLQKLFQ
Sbjct: 360 KEHLYVAQQTSAELCQASLFASKSVFRDMQNLIYHYAGDTNSLLAMLKAGSKGNLQKLFQ 419
Query: 2506 HSMCLGLQHSLAPLSFPIPRELSCASWNDQKSYYSVHKFHGSQEISDSYIPCTMVANSYL 2685
HSMCLGLQHSL P+SF +P LSCASWN+QK++ S+++ G++EI DSYIPCT+V++SYL
Sbjct: 420 HSMCLGLQHSLTPVSFSMPHYLSCASWNNQKNHLSLYRLDGTREILDSYIPCTVVSSSYL 479
Query: 2686 AGLNPLECFVLSLTTRDSSFGGHADVSGTLTRRLMFFMRDLINGYDGTVRSCHGNHVVQF 2865
GLNPLE F+ SLTTRDSSF G ADVSGTLTR+LMFFMRD+I GYDGTVR+ +G+ +VQF
Sbjct: 480 MGLNPLESFLHSLTTRDSSFSGQADVSGTLTRKLMFFMRDIITGYDGTVRNSYGSQIVQF 539
Query: 2866 NYCTKDLS----DASMGGHPVGXXXXXXXXXXXXXXLDQPVSVLEPSPLLTLKKVLDCGV 3033
+Y T D+S D MGGHPVG LDQPVS LEPSPL+ LKKVLDCGV
Sbjct: 540 DYGTGDMSAVNSDVLMGGHPVGSLAACAISEAAYSALDQPVSALEPSPLIALKKVLDCGV 599
Query: 3034 KKSTGSKSASLFLSGRLRRWANGFEYGALEVKDHLESLLFSDIVSEVKICFXXXXXXXXX 3213
K +TG KSASLFLS RL +W NGFE+GALEVKDH+ESLLFS++VSEV I F
Sbjct: 600 KNNTGGKSASLFLSRRLGKWVNGFEFGALEVKDHMESLLFSEVVSEVTISFSTERRTNIS 659
Query: 3214 XXPWACHFHINKEVAKRRRLKLRSVIDALYMNNKFTGVKSKVILPKLHVTSKVCSEVDTR 3393
PW C+F INKEV +R LKL SV+ L N T K K+ LP L + +K CSE D
Sbjct: 660 --PWVCNFCINKEVFMKRNLKLESVVHTLRANCNATPKKMKLKLPNLLIENKDCSEADFH 717
Query: 3394 KKSDSVICISAALSE---------SLKGFSDLDILRDMVKPVLLQTVIKGFPEFKKVDIL 3546
+ S S ICIS A+S+ SLK + LD LR+MV PVLL+TV+KGFPEFKKVDIL
Sbjct: 718 EDS-SRICISVAVSQNELSNLHFGSLKEYEILDYLRNMVIPVLLRTVVKGFPEFKKVDIL 776
Query: 3547 WKAEPNHPKSTKRPLGEPFLRVVTSEYCQKTKFWSILMDKCLRISNIIDWERSHPDDIHD 3726
WK E + + +K GEP++RV SE C++ +FW+IL++K LRI ++IDW+RSHPDD+HD
Sbjct: 777 WKDEQSRSRFSKCSSGEPYVRVFMSENCERARFWNILVEKSLRIRSLIDWDRSHPDDVHD 836
Query: 3727 CSEAYGIDVGWQCFVNSLHSAISDTGKTILPEHLVVTANCLSATGEFIALNAKGLAEQRK 3906
EA+GID W CFVNSL+SAIS+TGKTILPEHL+ TANCLS TGEF++LNAKGLA+QRK
Sbjct: 837 YGEAFGIDTAWMCFVNSLNSAISETGKTILPEHLIATANCLSMTGEFVSLNAKGLAQQRK 896
Query: 3907 AANVCSPFSQACFSNPSDCLVKAAKMGQMDRLQGSLEALSWGQTPSVGTGCHFDIVYNGK 4086
A + SPF QACFSNPSDC +KAAKMGQMD LQGS+++L+WGQTP +GTG FDI+Y+GK
Sbjct: 897 EATINSPFVQACFSNPSDCFIKAAKMGQMDNLQGSVDSLAWGQTPPIGTGGQFDIIYSGK 956
Query: 4087 GHEPAKPTDVYTLLSTHVARTKPDDPMK---QFSEKSIVSSHFNTKTRKSLLTKMASQHF 4257
GHEP+KPTDVY+LL++ V KP + +K QF+ + S + T RK L M S
Sbjct: 957 GHEPSKPTDVYSLLNSQVGFAKPSEKIKLPVQFTSGNDQSQNLKTNGRKRFLAGMKSLRS 1016
Query: 4258 SEVGIRKISQRLKRMLKEYPMNSKLSGEDKSTAIKALQFHPRWEDKIGTGVLDIKVGRHP 4437
+E IR++S LKRML EY + +L GEDK+ A++ALQ+HPRWE+K G G ++IKVGRHP
Sbjct: 1017 AEDEIREVSLALKRMLHEYASDCQLRGEDKTLALRALQYHPRWEEKTGAGTVEIKVGRHP 1076
Query: 4438 DHNET-CFFLVRTDGTEEDFSYNKCI 4512
DH E+ CFF+V+TDGTEED SY K I
Sbjct: 1077 DHKESRCFFVVKTDGTEEDISYRKSI 1102
>ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-B, putative [Theobroma
cacao] gi|508777356|gb|EOY24612.1| DNA-directed RNA
polymerase II subunit RPB1-B, putative [Theobroma cacao]
Length = 1484
Score = 1348 bits (3490), Expect = 0.0
Identities = 726/1477 (49%), Positives = 954/1477 (64%), Gaps = 48/1477 (3%)
Frame = +1
Query: 280 SMDNNLHIVQPVTSARLKAIHLNILSDEDAVKISASIIGTVNEVSDAALGLPTTNATECG 459
SM+N+L+ + + +A + I N+ +D D K+S I +EVSD LG P + C
Sbjct: 3 SMENDLYEAEQLPAAFVTGIRFNVSNDRDNEKMSVMEIAAPSEVSDPKLGFPNFS-NHCT 61
Query: 460 TCGAKNSKECEGHFGLINFPFTILNPYFMSEVAQILNKICPGCKSIRRG-NVKKADSASS 636
TCGA + K CEGHFG+INFP+ IL+PYF+SEV QILNKICPGCKS+R+ +K A+S S
Sbjct: 62 TCGAADMKHCEGHFGVINFPYAILHPYFLSEVVQILNKICPGCKSVRKDLRIKGANSVSK 121
Query: 637 HHQPKYCRYCNGKSKYGYPRMKFKVSSKDVFAKTAIIAEVHE---MFVNKSSDWVLASDY 807
+Q K C+YC G S YP M FK+SSKD+F K+AII EV E M V K L SDY
Sbjct: 122 VNQRKGCKYCVGNSIDWYPPMNFKISSKDLFRKSAIIVEVSEKSSMKVRKRGKQALPSDY 181
Query: 808 WDIIPKDPSQAHEGLPANKRVLSPAQVYNILKDVCPRTLEALVNRKNSIFLNSLLVTPNS 987
WD IPKD Q + N+RVLS +QV +LKDV P ++ V +SIFLN VTPNS
Sbjct: 182 WDFIPKDEQQEESLIRPNRRVLSHSQVRYLLKDVDPEFIKKFVLSMDSIFLNCFPVTPNS 241
Query: 988 HRVREF------GQRITVDETTKMYRKLVDFRGTPNELSARVLDRYKLSKIRSEKLSNLQ 1149
HRV E GQR+ D+ T++Y+KL DFRG NELS+ VL+ K+SK+ EK SN +
Sbjct: 242 HRVTEIMHASSNGQRLIFDQRTRVYKKLADFRGIANELSSHVLECLKISKLHLEKPSNEE 301
Query: 1150 K--IYEKQXXXXXXXXXXGLKNIKELLLGKRTDHSFRMVVVGDPRIKVNEIGLPTQIAEN 1323
+ ++ GL+ +K+++LGKR DH FRMV+ G+P +K++EI +P +AE
Sbjct: 302 SALVLAQKRNKDSASNMSGLRYMKDVILGKRNDHCFRMVLTGNPNLKLSEISIPCHVAER 361
Query: 1324 VLISDHLNIWNWGKLEQCCEFMLKEKGNFSVLRNGQRVCIWSKDMLQKGDSICRHLLDGD 1503
+ I++ LN WN +L+ CC+ L EKG V R G+ V I + LQ GD+I R L +GD
Sbjct: 362 LQIAEQLNNWNEERLKACCDLRLLEKGEIHVRREGRLVRIRHNEKLQVGDTIFRPLNNGD 421
Query: 1504 IVLINRPPSIHQHSLIALSVKILPINSVASINPLICSPLRGDFDGDCLHGYVPQSVNSRV 1683
I+LINRPPSIHQHSLIALSVK+LP++SV SINPLICSP RGDFDGDCLHGYVPQS+ +RV
Sbjct: 422 IILINRPPSIHQHSLIALSVKVLPVSSVVSINPLICSPFRGDFDGDCLHGYVPQSIKARV 481
Query: 1684 ELTELVSLDKQLVNGQDGRNXXXXXXXXXXXXXXXXENGVLLNKTEIQQLQMFCPCIPVL 1863
EL ELVSL++QL+NGQ GRN E+GVLLN ++QQL+MFCP
Sbjct: 482 ELIELVSLNRQLINGQSGRNLLSLSHDSLTAAYLVKEDGVLLNLFQMQQLEMFCPNHSPF 541
Query: 1864 PAIIK-PTSRSSLWTGKQLFSLLLPPDFEFAYESNGVCIRKGELVSSSHGSAWLNDNSEN 2040
PAI+K P RSS+WTGKQL S+L P +F++ + N V IR GEL+SSS GS WL D N
Sbjct: 542 PAIVKAPLLRSSVWTGKQLLSMLFPLEFDYDFTPNDVVIRNGELISSSEGSTWLRDADGN 601
Query: 2041 IFQCLLRHNRDRALDFLNAGQEVLCEWLSRRGXXXXXXXXXXXXXTESRKNLLDEIHYGL 2220
+FQ L++H + + LDFL A QEVLCEWLS RG + S+KN++DEI GL
Sbjct: 602 LFQSLIKHYQGKVLDFLYAAQEVLCEWLSMRGLSVSLSDLYLSSDSNSQKNMMDEIFCGL 661
Query: 2221 EEAEKLSEVSLLMVGGNEDLLVESSDENEDMEKFLKERILIDQQTKAEFFQASLSASKSV 2400
+E E+ LMV N D LV +E + E++ ++Q A QAS+ + K V
Sbjct: 662 QEIEQTCNFKQLMVDSNHDFLVGHDEEVDSFMALDVEQMCYEKQRSAALSQASVDSFKQV 721
Query: 2401 LWDMQNLVYKHCGSNNSFMAMLKAGSKGNLQKLFQHSMCLGLQHSLAPLSFPIPRELSCA 2580
D+QNL+YK+ +NS + M KAGSKGNL KL QHS+CLGLQHSL PLSF P +LSCA
Sbjct: 722 FRDIQNLLYKYANKDNSLLTMFKAGSKGNLLKLVQHSLCLGLQHSLVPLSFRFPHQLSCA 781
Query: 2581 SWNDQKSYYSVHKFHGSQEISDSYIPCTMVANSYLAGLNPLECFVLSLTTRDSSFGGHAD 2760
+WN+QKS+ K + E + +YIP +V +S++ GLNPLE FV S+T+RDSSF +AD
Sbjct: 782 AWNNQKSHGLTQKVDDTAESAKNYIPYAVVESSFMTGLNPLESFVHSVTSRDSSFSDNAD 841
Query: 2761 VSGTLTRRLMFFMRDLINGYDGTVRSCHGNHVVQFNY-CTKDLSDAS------------- 2898
+ GTL+RRLMFFMRDL YDGTVR+ +G+ VVQF Y KD S +
Sbjct: 842 LPGTLSRRLMFFMRDLYTAYDGTVRNSYGDLVVQFCYDIDKDASSPTSCAHGLISESSTI 901
Query: 2899 ---MGGHPVGXXXXXXXXXXXXXXLDQPVSVLEPSPLLTLKKVLDCGVKKSTGSKSASLF 3069
+GG PVG LDQPVS+LE SPLL LK+V++CG K+S ++ +LF
Sbjct: 902 PEGIGGQPVGSLSACAISEAAYSALDQPVSLLETSPLLNLKRVVECGSKRSNADQTMTLF 961
Query: 3070 LSGRLRRWANGFEYGALEVKDHLESLLFSDIVSEVKICFXXXXXXXXXXXPWACHFHINK 3249
LS +L R +G EY ALEVK+HLE L FSDIV+ V I F PW CHFH+ K
Sbjct: 962 LSNKLGRKRHGSEYAALEVKNHLERLTFSDIVTTVSIIFSPQMYRENHFTPWVCHFHVCK 1021
Query: 3250 EVAKRRRLKLRSVIDALYMNNKFTGVKSKVILPKLHVTS--KVCSEVDTRKKSDSVICIS 3423
+ KRR+LK++S+ID+L+M+ K+ LP + +TS + CS +D + D+ CI+
Sbjct: 1022 DTMKRRQLKVQSIIDSLHMHCTTAKTMWKISLPDMQITSNGRACSHIDMPNEDDT-FCIT 1080
Query: 3424 AALSE-SLKGFSDLDILRDMVKPVLLQTVIKGFPEFKKVDILWKAEPNHPKSTKRPLGEP 3600
+ E S +LD++RDMV P LL+ VIKGFPE KKVDILWK K K GE
Sbjct: 1081 VTIVEYSKSSHMELDVIRDMVIPYLLEAVIKGFPEIKKVDILWKDRLKVSKPHKSSCGEL 1140
Query: 3601 FLRVVTSEYCQKTKFWSILMDKCLRISNIIDWERSHPDDIHDCSEAYGIDVGWQCFVNSL 3780
+LRV S TK W +LM+ CL+I ++IDW RSHPD+I+ AYGID GW+ F+N+L
Sbjct: 1141 YLRVFVSGDFGITKLWGVLMNDCLQIMDMIDWTRSHPDNINQLCLAYGIDAGWKFFLNNL 1200
Query: 3781 HSAISDTGKTILPEHLVVTANCLSATGEFIALNAKGLAEQRKAANVCSPFSQACFSNPSD 3960
SAISDTGKTIL EHL+V ANCLSATGEF+ LN+KGL +QR+ A V SPF QACFSNPS
Sbjct: 1201 KSAISDTGKTILNEHLLVVANCLSATGEFVGLNSKGLRQQREHAYVSSPFMQACFSNPSA 1260
Query: 3961 CLVKAAKMGQMDRLQGSLEALSWGQTPSVGTGCHFDIVYNGKGHEPAKPTDVYTLLSTHV 4140
VKAAK G D LQG+++AL+WG+ P +GTG FDI+Y+ K A+P DVY LL + +
Sbjct: 1261 SFVKAAKTGASDDLQGTIDALAWGRIPHIGTGGQFDIIYSVKDQRLAEPVDVYKLLGSSI 1320
Query: 4141 ARTKPDDPMKQFSEKSIVSSHFN-----------TKTRKSLLTKMAS---QHFSEVGIRK 4278
+ K D + + S + ++ K + TK S + + I++
Sbjct: 1321 SSQKQDVEFEVPKALNFKSEKYGSLLIDALGDSASEELKKIETKRRSIWRELLTLDDIQR 1380
Query: 4279 ISQRLKRMLKEYPMNSKLSGEDKSTAIKALQFHPRWEDKIGTGVLDIKVGRHPDH-NETC 4455
+S+ L+ +L +YP++ +LS D +T + AL FHPR ++KIG+G +IKVG HP+H N C
Sbjct: 1381 LSRALRNILHKYPIDHRLSEADWNTLMMALYFHPRRDEKIGSGAQEIKVGYHPEHANARC 1440
Query: 4456 FFLVRTDGTEEDFSYNKCIHHALEIIAPEKASAYRSR 4566
F LVRTDGT DFSY+KC+ ALEIIAP +A +Y+S+
Sbjct: 1441 FSLVRTDGTIVDFSYHKCVLGALEIIAPHRAKSYKSK 1477
>ref|XP_008238796.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase IV
subunit 1 [Prunus mume]
Length = 1452
Score = 1348 bits (3489), Expect = 0.0
Identities = 731/1461 (50%), Positives = 945/1461 (64%), Gaps = 30/1461 (2%)
Frame = +1
Query: 283 MDNNLHIVQPVTSARLKAIHLNILSDEDAVKISASIIGTVNEVSDAALGLPTTNATECGT 462
MDN L+ + V S + IHLN+ + ED IS I V EV+D LGLP + +C T
Sbjct: 1 MDNELYEEEGVPSGLITGIHLNVSTQEDIENISVKQIDAVTEVTDPKLGLPNPSF-QCST 59
Query: 463 CGAKNSKECEGHFGLINFPFTILNPYFMSEVAQILNKICPGCKSIRRGNVKKADSASSHH 642
CGA+ K CEGHFG I FP TIL+PY++SEVAQILNKICPGCKSIR+ K + H
Sbjct: 60 CGAEKLKCCEGHFGDIKFPCTILHPYYLSEVAQILNKICPGCKSIRQNLRAKVSYRTLHV 119
Query: 643 QPKYCRYCNGKSKYGYPRMKFKVSSKDVFAKTAIIAEVHEMFVNKSSDWVLASDYWDIIP 822
P CR NG S +PRMKFKVS++++F ++AIIAE ++ +L +DYWD IP
Sbjct: 120 DPXDCRI-NGSS-INFPRMKFKVSTRELFKRSAIIAE---------ANGILPADYWDFIP 168
Query: 823 KDPSQAHEGLPANKRVLSPAQVYNILKDVCPRTLEALVNRKNSIFLNSLLVTPNSHRVRE 1002
KD Q + NKRVLS AQV+ +LKDV P+ +E +V + NS+F+ S LVTPN HRV E
Sbjct: 169 KDAQQDESCMKPNKRVLSHAQVHYLLKDVDPKFIEKIVPKTNSLFMGSFLVTPNCHRVTE 228
Query: 1003 F------GQRITVDETTKMYRKLVDFRGTPNELSARVLDRYKLSKIRSEKLSNLQKIYEK 1164
GQR+ DE T+ YRKLVDF+G NEL +RVLD K+SK+ SEK S ++
Sbjct: 229 VMHSFSNGQRLMFDERTRAYRKLVDFKGVANELGSRVLDCLKISKLNSEKPSKDFISAQQ 288
Query: 1165 QXXXXXXXXXXGLKNIKELLLGKRTDHSFRMVVVGDPRIKVNEIGLPTQIAENVLISDHL 1344
+ GL+ IK+++LGKR+DH FR VVVGDP IK++EIG+P QIAE + IS++L
Sbjct: 289 KNIKDDPSKTSGLRWIKDVVLGKRSDHCFRTVVVGDPNIKLSEIGIPCQIAERLQISENL 348
Query: 1345 NIWNWGKLEQCCEFMLKEKGNFSVLRNGQRVCIWSKDMLQKGDSICRHLLDGDIVLINRP 1524
N WN KL+ C L KG V R G V + D LQ GD+I R L DGDIVLINRP
Sbjct: 349 NRWNIEKLDASCNLRLMVKGEMHVRRKGSLVWVRRTDELQMGDTIYRPLSDGDIVLINRP 408
Query: 1525 PSIHQHSLIALSVKILPINSVASINPLICSPLRGDFDGDCLHGYVPQSVNSRVELTELVS 1704
PSIHQHSLIALSVKILPI SV SINPL CSP RGDFDGDCLHGY+PQS ++RVEL ELV+
Sbjct: 409 PSIHQHSLIALSVKILPITSVVSINPLCCSPFRGDFDGDCLHGYIPQSNDARVELRELVA 468
Query: 1705 LDKQLVNGQDGRNXXXXXXXXXXXXXXXXENGVLLNKTEIQQLQMFCPCIPVLPAIIK-P 1881
LDKQL+NGQ GRN E+G LLN E+QQL+MFC + PA+IK P
Sbjct: 469 LDKQLINGQSGRNLLSLSQDSLTAAHLIMEDGTLLNLLEMQQLEMFCWDVLPSPAVIKAP 528
Query: 1882 TSRSSLWTGKQLFSLLLPPDFEFAYESNGVCIRKGELVSSSHGSAWLNDNSENIFQCLLR 2061
+ S WTGKQ+FS+LLP DF++ + S+GV I+ GEL+SS GS+WL D N+FQ L+
Sbjct: 529 SLNSHAWTGKQVFSMLLPSDFDYDFASDGVYIKNGELLSSE-GSSWLRDTGGNLFQSLVN 587
Query: 2062 HNRDRALDFLNAGQEVLCEWLSRRGXXXXXXXXXXXXXTESRKNLLDEIHYGLEEAEKLS 2241
H + + LDFL A QEVLCEWLS RG + SR NL++EI GL+EAE+
Sbjct: 588 HFQGQVLDFLFAAQEVLCEWLSMRGLSVSLADLYLASDSGSRNNLMEEISCGLQEAEQAC 647
Query: 2242 EVSLLMVGGNEDLLVESSDENEDMEKFLKERILIDQQTKAEFFQASLSASKSVLWDMQNL 2421
L+V ++ L+ ++EN F E ++Q A Q A K + D+Q+L
Sbjct: 648 IFKQLLVDNCQEFLMGCAEENRSPLTFDAEYFCHEKQKSAALSQVVHDAFKHIFRDIQSL 707
Query: 2422 VYKHCGSNNSFMAMLKAGSKGNLQKLFQHSMCLGLQHSLAPLSFPIPRELSCASWNDQKS 2601
+K+ G +NS + MLKAGSKGNLQKL QHSMCLGLQHSL PLSF IP +LSCA+WN+QK+
Sbjct: 708 AHKYAGKDNSLLTMLKAGSKGNLQKLVQHSMCLGLQHSLIPLSFRIPNQLSCAAWNNQKA 767
Query: 2602 YYSVHKFHGSQEISDSYIPCTMVANSYLAGLNPLECFVLSLTTRDSSFGGHADVSGTLTR 2781
+ K G+ E +SYIP +V +S+L GLNPLECFV S+T+RDSSF G+AD+ GTLTR
Sbjct: 768 CSLIQKVEGTYECVESYIPSAVVESSFLTGLNPLECFVHSVTSRDSSFSGNADLPGTLTR 827
Query: 2782 RLMFFMRDLINGYDGTVRSCHGNHVVQFNY-CTKDLSDAS-------------MGGHPVG 2919
+LMF MRDL YDGTVR+ +GN +VQF+Y D SD++ +GG PVG
Sbjct: 828 KLMFLMRDLYTAYDGTVRNAYGNQLVQFSYDIDMDKSDSTSTSYAKSTTACDGIGGQPVG 887
Query: 2920 XXXXXXXXXXXXXXLDQPVSVLEPSPLLTLKKVLDCGVKKSTGSKSASLFLSGRLRRWAN 3099
LDQPVS+LE SPLL LK +L+CG KKS+ ++ SLFLS +L R +
Sbjct: 888 SLSACALSEAAYSALDQPVSLLETSPLLNLKNILECGSKKSSAKQTMSLFLSEKLGRRRH 947
Query: 3100 GFEYGALEVKDHLESLLFSDIVSEVKICFXXXXXXXXXXXPWACHFHINKEVAKRRRLKL 3279
GFEYGALEVK+HL L FSDIVS V I F PW HFHI KE+ ++RRLK+
Sbjct: 948 GFEYGALEVKNHLVGLTFSDIVSTVMIIFSSQNNSQKRFSPWVTHFHICKEIVRKRRLKV 1007
Query: 3280 RSVIDALYMNNKFTGVKSKVILPKLHVTSKVCSEVDTRKKSDSVICISAALSESLKGFSD 3459
SV+D+LY + KV+L L +TSK CS T D CI+ + E+ K S+
Sbjct: 1008 HSVVDSLYARCNSARPELKVVLRSLLITSKGCSAAQTCNGDDDTFCITVTMPENSKNSSE 1067
Query: 3460 -LDILRDMVKPVLLQTVIKGFPEFKKVDILWKAEPNHPKSTKRPLGEPFLRVVTSEYCQK 3636
LDI RD+V P LL TV+KGF E KKVDILW P K GE +LRV S +
Sbjct: 1068 QLDIARDLVIPFLLGTVVKGFLEVKKVDILWNDHPRESKKIHGSSGELYLRVSMSGKTGR 1127
Query: 3637 TKFWSILMDKCLRISNIIDWERSHPDDIHDCSEAYGIDVGWQCFVNSLHSAISDTGKTIL 3816
+ WS+LMD CL+I N+IDW RSHPD++HD AYGID GW+ F+N+L +A +D GK IL
Sbjct: 1128 RRLWSMLMDNCLQIMNLIDWSRSHPDNVHDYCIAYGIDAGWKYFLNNLETAANDIGKDIL 1187
Query: 3817 PEHLVVTANCLSATGEFIALNAKGLAEQRKAANVCSPFSQACFSNPSDCLVKAAKMGQMD 3996
P+HL++ A+CLSATGEF+ LNAKG+A+Q+ A+V SPF QACFS+P C +KAAK G +D
Sbjct: 1188 PQHLILVADCLSATGEFVGLNAKGIAQQKGHASVSSPFVQACFSSPGACFIKAAKGGVVD 1247
Query: 3997 RLQGSLEALSWGQTPSVGTGCHFDIVYNGKGHEPAKPTDVYTLLSTHVARTKPD--DPMK 4170
L GS+EAL+WG TP GTG FDI+Y+ +G +KP + Y LL + ++ + + + K
Sbjct: 1248 ELHGSVEALAWGNTPPSGTGRQFDILYSKEGLNLSKPLNPYDLLGSQISSSSENAFETSK 1307
Query: 4171 QFSEKSIVS---SHFNTKTRKSLLTKMASQHFSEVGIRKISQRLKRMLKEYPMNSKLSGE 4341
++ ++ + + +++ + ++ + I+K +Q LKR+L++Y +N L+
Sbjct: 1308 AWNNNTLDKCDVTSIGLEKSENVFKSVIRKYLTINDIQKWTQTLKRILRKYDINESLTEG 1367
Query: 4342 DKSTAIKALQFHPRWEDKIGTGVLDIKV---GRHPDHNETCFFLVRTDGTEEDFSYNKCI 4512
DKS AL FHP DK+G+GV DIKV + N CF LVR D TEEDFSY+KC+
Sbjct: 1368 DKSILKMALHFHPHKVDKMGSGVQDIKVHYIEKRKHENARCFMLVRIDRTEEDFSYHKCV 1427
Query: 4513 HHALEIIAPEKASAYRSRKQN 4575
ALEI+APE+A +YRS+ N
Sbjct: 1428 LGALEIVAPERAKSYRSKWMN 1448
>ref|XP_012476045.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
[Gossypium raimondii] gi|823152441|ref|XP_012476046.1|
PREDICTED: DNA-directed RNA polymerase IV subunit 1-like
isoform X1 [Gossypium raimondii]
gi|763758424|gb|KJB25755.1| hypothetical protein
B456_004G207300 [Gossypium raimondii]
gi|763758426|gb|KJB25757.1| hypothetical protein
B456_004G207300 [Gossypium raimondii]
Length = 1481
Score = 1339 bits (3466), Expect = 0.0
Identities = 718/1480 (48%), Positives = 946/1480 (63%), Gaps = 50/1480 (3%)
Frame = +1
Query: 277 ASMDNNLHIVQPVTSARLKAIHLNILSDEDAVKISASIIGTVNEVSDAALGLPTTNATEC 456
ASM+++ Q ++A L I ++ +D D +S I +EVSD LG P + C
Sbjct: 2 ASMESDSSEEQENSTAFLTGIKFHVSNDADNENMSILEITAPSEVSDPRLGFPNFS-NHC 60
Query: 457 GTCGAKNSKECEGHFGLINFPFTILNPYFMSEVAQILNKICPGCKSIRRGN-VKKADSAS 633
TC A++ K+CEGHFG+I FP+TIL+P+F+SEV ILNKICPGCKSIR+ +K A+S +
Sbjct: 61 TTCDARDMKQCEGHFGVIKFPYTILHPFFLSEVVHILNKICPGCKSIRKDLWMKGANSIA 120
Query: 634 SHHQPKYCRYCNGKSKYGYPRMKFKVSSKDVFAKTAIIAEVHE---MFVNKSSDWVLASD 804
+ K C+YC G S YP M+FK++SK++F K+AI+ EV E M V K L +D
Sbjct: 121 RLLETKGCKYCVGNSIEWYPPMRFKITSKELFRKSAIMVEVSENSLMKVRKRGRQALPAD 180
Query: 805 YWDIIPKDPSQAHEGLPANKRVLSPAQVYNILKDVCPRTLEALVNRKNSIFLNSLLVTPN 984
YWD IPKD Q + +RVLS AQV ++LKDV P ++ ++ +SIFLN VTPN
Sbjct: 181 YWDFIPKDQQQEEGFVKPGRRVLSHAQVRHLLKDVNPEFIKKFISEADSIFLNFFPVTPN 240
Query: 985 SHRVREF------GQRITVDETTKMYRKLVDFRGTPNELSARVLDRYKLSKIRSEKLSNL 1146
SHRV E QR+ DE T++Y+KLVDFRG NELS+ VL+ K+SK+ EK S
Sbjct: 241 SHRVTEIMHTSSNAQRLIFDERTRVYKKLVDFRGLANELSSHVLECLKISKLHVEKPSTE 300
Query: 1147 QK--IYEKQXXXXXXXXXXGLKNIKELLLGKRTDHSFRMVVVGDPRIKVNEIGLPTQIAE 1320
I + GL+ +K+++LGKR DH FRMV+ G+P +K++EIG+P +AE
Sbjct: 301 DSALIAALKKNKDSASNMSGLRYMKDVILGKRNDHCFRMVLTGNPNLKLSEIGIPCHVAE 360
Query: 1321 NVLISDHLNIWNWGKLEQCCEFMLKEKGNFSVLRNGQRVCIWSKDMLQKGDSICRHLLDG 1500
+ I++ LN WN +L+ CC + EKG + R G+ V I + +Q GD+I R L DG
Sbjct: 361 KLQIAEQLNRWNEERLKTCCNLRILEKGEIRIRREGKLVRIRHNEKVQVGDTIYRPLNDG 420
Query: 1501 DIVLINRPPSIHQHSLIALSVKILPINSVASINPLICSPLRGDFDGDCLHGYVPQSVNSR 1680
D VLINRPPSIHQHSLIALSVK+LP+NSV SINPLICSP RGDFDGDCLHGYVPQS+N+R
Sbjct: 421 DTVLINRPPSIHQHSLIALSVKVLPVNSVVSINPLICSPFRGDFDGDCLHGYVPQSINTR 480
Query: 1681 VELTELVSLDKQLVNGQDGRNXXXXXXXXXXXXXXXXENGVLLNKTEIQQLQMFCPCIPV 1860
VEL+ELVSLD+QL+NGQ GRN E+GVLLN ++QQL+MFCP
Sbjct: 481 VELSELVSLDRQLINGQSGRNLLSLSHDSLTAAYLVKEDGVLLNLFQMQQLEMFCPNHSP 540
Query: 1861 LPAIIK-PTSRSSLWTGKQLFSLLLPPDFEFAYESNGVCIRKGELVSSSHGSAWLNDNSE 2037
LPAI+K P + +WTGKQLFS+L PP+F++ + +GV I G+L+ SS GS+WL D
Sbjct: 541 LPAIVKAPLLSNPVWTGKQLFSMLFPPEFDYVFAPSGVVIHNGDLICSSEGSSWLRDADG 600
Query: 2038 NIFQCLLRHNRDRALDFLNAGQEVLCEWLSRRGXXXXXXXXXXXXXTESRKNLLDEIHYG 2217
N+FQ L++H + + LDFL+A QEVLCEWLS RG T+S+KN++DEI YG
Sbjct: 601 NLFQSLIKHYQGKVLDFLHAAQEVLCEWLSMRGLSVSLLDLYLSPDTDSQKNMMDEIFYG 660
Query: 2218 LEEAEKLSEVSLLMVGGNEDLLVESSDENEDMEKFLKERILIDQQTKAEFFQASLSASKS 2397
L+EAE+ LMV +D L + +E E++ ++Q A QAS+ + K
Sbjct: 661 LQEAEQTCNFKQLMVDSCQDFLAGNDEETNRFMVLDVEQMCYEKQRSAALSQASVDSFKQ 720
Query: 2398 VLWDMQNLVYKHCGSNNSFMAMLKAGSKGNLQKLFQHSMCLGLQHSLAPLSFPIPRELSC 2577
V D+QNL+YK+ +NS M KAGSKGNL KL QHSMCLGLQHSL PLSF P +LSC
Sbjct: 721 VFRDIQNLLYKYANKDNSLFTMFKAGSKGNLLKLVQHSMCLGLQHSLVPLSFRFPHQLSC 780
Query: 2578 ASWNDQKSYYSVHKFHGSQEISDSYIPCTMVANSYLAGLNPLECFVLSLTTRDSSFGGHA 2757
A+WN+QKS+ K + E + YIP +V +S++ GLNPLECFV S+TTRD+SF +A
Sbjct: 781 AAWNNQKSHILTQKVDDTDESAKKYIPYAVVESSFVKGLNPLECFVHSVTTRDTSFSDNA 840
Query: 2758 DVSGTLTRRLMFFMRDLINGYDGTVRSCHGNHVVQFNY-----------CTKDLSDA--- 2895
D+ GTL+RRLMFFMRDL YDGTVR+ +G+ VVQF Y C L
Sbjct: 841 DLPGTLSRRLMFFMRDLCAAYDGTVRNAYGDQVVQFCYNIDKGTFSPTSCPDKLVSQGSS 900
Query: 2896 ---SMGGHPVGXXXXXXXXXXXXXXLDQPVSVLEPSPLLTLKKVLDCGVKKSTGSKSASL 3066
+GG PVG LDQP+S+LE SPLL LK+VL+CG K+S ++ SL
Sbjct: 901 LPDGIGGQPVGSLSACAISEAAYSALDQPISLLESSPLLNLKRVLECGSKRSNADQTMSL 960
Query: 3067 FLSGRLRRWANGFEYGALEVKDHLESLLFSDIVSEVKICFXXXXXXXXXXXPWACHFHIN 3246
FLSG+L R +G EYGALEVK+HLE L+F DIVS V I F PW CHFH+
Sbjct: 961 FLSGKLVRRRHGQEYGALEVKNHLERLIFKDIVSTVSIIFSPQMSSENRFSPWVCHFHVF 1020
Query: 3247 KEVAKRRRLKLRSVIDALYMNNKFTGVKSKVILPKLHVTSKVCSEVDTRKKSDSVICISA 3426
K++ RRRL + S+IDAL+M+ K+ LP + VTSK CS +D + D+ CI+
Sbjct: 1021 KDIVTRRRLTVHSIIDALHMHCTNAKRLWKINLPDMQVTSKACSVIDMENEDDT-FCITV 1079
Query: 3427 ALSESLKGFSDLDILRDMVKPVLLQTVIKGFPEFKKVDILWKAEPNHPKSTKRPLGEPFL 3606
+ E +LD+++DMV P LL+ V+KGFPE KKV+ILW + P S K GE +L
Sbjct: 1080 TIVECKTSRIELDVIQDMVIPSLLEAVVKGFPEIKKVEILWNEDFRVPNSHKPAPGELYL 1139
Query: 3607 RVVTSEYCQKTKFWSILMDKCLRISNIIDWERSHPDDIHDCSEAYGIDVGWQCFVNSLHS 3786
RV S TK WS+LM+ CL++ +IIDW RSHPD+I+ A+GID GW+ F+N++ S
Sbjct: 1140 RVSVSGDFGITKLWSVLMNDCLQLMDIIDWTRSHPDNINQFCLAFGIDAGWRFFLNNMKS 1199
Query: 3787 AISDTGKTILPEHLVVTANCLSATGEFIALNAKGLAEQRKAANVCSPFSQACFSNPSDCL 3966
AISDTGK+IL EHL + ANCLSATGEF+ LN+KGL +QR+ A V SPF QACFSNPS C
Sbjct: 1200 AISDTGKSILNEHLHLAANCLSATGEFVGLNSKGLKQQREHAFVSSPFMQACFSNPSACF 1259
Query: 3967 VKAAKMGQMDRLQGSLEALSWGQTPSVGTGCHFDIVYNGKGHEPAKPTDVYTLLSTHVAR 4146
VKAAK G D LQG+++ L+WG+ P +GTG FDIVY+ K E A+P DVY LL +
Sbjct: 1260 VKAAKTGVADNLQGTIDLLAWGRVPRIGTGGQFDIVYSMKDEELAEPVDVYKLLGDSINS 1319
Query: 4147 TKPD-----------------DPMKQFSEKSIVS--SHFNTKTRKSLLTKMASQHFSEVG 4269
K D P K S+ TKTR L ++
Sbjct: 1320 KKQDIEFEVPKVFNPTSEKHSSPFKGALRDSVFDEWKKIETKTRSLLRGRLTLN-----D 1374
Query: 4270 IRKISQRLKRMLKEYPMNSKLSGEDKSTAIKALQFHPRWEDKIGTGVLDIKVGRHPDHNE 4449
++++ + LK +L++YP++ ++S D T + AL FHP +KIG+G +IKVG HPDH +
Sbjct: 1375 VQRLERNLKNILRKYPIDHRVSEADWDTLMMALYFHPHRVEKIGSGAKEIKVGHHPDHAD 1434
Query: 4450 T-CFFLVRTDGTEEDFSYNKCIHHALEIIAPEKASAYRSR 4566
+ CFFLVRTD T DFSY KC+ ALEIIAP +A +Y+S+
Sbjct: 1435 SRCFFLVRTDETTVDFSYRKCVVGALEIIAPCRAQSYKSK 1474
>gb|KJB25756.1| hypothetical protein B456_004G207300 [Gossypium raimondii]
Length = 1478
Score = 1333 bits (3450), Expect = 0.0
Identities = 715/1478 (48%), Positives = 943/1478 (63%), Gaps = 50/1478 (3%)
Frame = +1
Query: 283 MDNNLHIVQPVTSARLKAIHLNILSDEDAVKISASIIGTVNEVSDAALGLPTTNATECGT 462
M+++ Q ++A L I ++ +D D +S I +EVSD LG P + C T
Sbjct: 1 MESDSSEEQENSTAFLTGIKFHVSNDADNENMSILEITAPSEVSDPRLGFPNFS-NHCTT 59
Query: 463 CGAKNSKECEGHFGLINFPFTILNPYFMSEVAQILNKICPGCKSIRRGN-VKKADSASSH 639
C A++ K+CEGHFG+I FP+TIL+P+F+SEV ILNKICPGCKSIR+ +K A+S +
Sbjct: 60 CDARDMKQCEGHFGVIKFPYTILHPFFLSEVVHILNKICPGCKSIRKDLWMKGANSIARL 119
Query: 640 HQPKYCRYCNGKSKYGYPRMKFKVSSKDVFAKTAIIAEVHE---MFVNKSSDWVLASDYW 810
+ K C+YC G S YP M+FK++SK++F K+AI+ EV E M V K L +DYW
Sbjct: 120 LETKGCKYCVGNSIEWYPPMRFKITSKELFRKSAIMVEVSENSLMKVRKRGRQALPADYW 179
Query: 811 DIIPKDPSQAHEGLPANKRVLSPAQVYNILKDVCPRTLEALVNRKNSIFLNSLLVTPNSH 990
D IPKD Q + +RVLS AQV ++LKDV P ++ ++ +SIFLN VTPNSH
Sbjct: 180 DFIPKDQQQEEGFVKPGRRVLSHAQVRHLLKDVNPEFIKKFISEADSIFLNFFPVTPNSH 239
Query: 991 RVREF------GQRITVDETTKMYRKLVDFRGTPNELSARVLDRYKLSKIRSEKLSNLQK 1152
RV E QR+ DE T++Y+KLVDFRG NELS+ VL+ K+SK+ EK S
Sbjct: 240 RVTEIMHTSSNAQRLIFDERTRVYKKLVDFRGLANELSSHVLECLKISKLHVEKPSTEDS 299
Query: 1153 --IYEKQXXXXXXXXXXGLKNIKELLLGKRTDHSFRMVVVGDPRIKVNEIGLPTQIAENV 1326
I + GL+ +K+++LGKR DH FRMV+ G+P +K++EIG+P +AE +
Sbjct: 300 ALIAALKKNKDSASNMSGLRYMKDVILGKRNDHCFRMVLTGNPNLKLSEIGIPCHVAEKL 359
Query: 1327 LISDHLNIWNWGKLEQCCEFMLKEKGNFSVLRNGQRVCIWSKDMLQKGDSICRHLLDGDI 1506
I++ LN WN +L+ CC + EKG + R G+ V I + +Q GD+I R L DGD
Sbjct: 360 QIAEQLNRWNEERLKTCCNLRILEKGEIRIRREGKLVRIRHNEKVQVGDTIYRPLNDGDT 419
Query: 1507 VLINRPPSIHQHSLIALSVKILPINSVASINPLICSPLRGDFDGDCLHGYVPQSVNSRVE 1686
VLINRPPSIHQHSLIALSVK+LP+NSV SINPLICSP RGDFDGDCLHGYVPQS+N+RVE
Sbjct: 420 VLINRPPSIHQHSLIALSVKVLPVNSVVSINPLICSPFRGDFDGDCLHGYVPQSINTRVE 479
Query: 1687 LTELVSLDKQLVNGQDGRNXXXXXXXXXXXXXXXXENGVLLNKTEIQQLQMFCPCIPVLP 1866
L+ELVSLD+QL+NGQ GRN E+GVLLN ++QQL+MFCP LP
Sbjct: 480 LSELVSLDRQLINGQSGRNLLSLSHDSLTAAYLVKEDGVLLNLFQMQQLEMFCPNHSPLP 539
Query: 1867 AIIK-PTSRSSLWTGKQLFSLLLPPDFEFAYESNGVCIRKGELVSSSHGSAWLNDNSENI 2043
AI+K P + +WTGKQLFS+L PP+F++ + +GV I G+L+ SS GS+WL D N+
Sbjct: 540 AIVKAPLLSNPVWTGKQLFSMLFPPEFDYVFAPSGVVIHNGDLICSSEGSSWLRDADGNL 599
Query: 2044 FQCLLRHNRDRALDFLNAGQEVLCEWLSRRGXXXXXXXXXXXXXTESRKNLLDEIHYGLE 2223
FQ L++H + + LDFL+A QEVLCEWLS RG T+S+KN++DEI YGL+
Sbjct: 600 FQSLIKHYQGKVLDFLHAAQEVLCEWLSMRGLSVSLLDLYLSPDTDSQKNMMDEIFYGLQ 659
Query: 2224 EAEKLSEVSLLMVGGNEDLLVESSDENEDMEKFLKERILIDQQTKAEFFQASLSASKSVL 2403
EAE+ LMV +D L + +E E++ ++Q A QAS+ + K V
Sbjct: 660 EAEQTCNFKQLMVDSCQDFLAGNDEETNRFMVLDVEQMCYEKQRSAALSQASVDSFKQVF 719
Query: 2404 WDMQNLVYKHCGSNNSFMAMLKAGSKGNLQKLFQHSMCLGLQHSLAPLSFPIPRELSCAS 2583
D+QNL+YK+ +NS M KAGSKGNL KL QHSMCLGLQHSL PLSF P +LSCA+
Sbjct: 720 RDIQNLLYKYANKDNSLFTMFKAGSKGNLLKLVQHSMCLGLQHSLVPLSFRFPHQLSCAA 779
Query: 2584 WNDQKSYYSVHKFHGSQEISDSYIPCTMVANSYLAGLNPLECFVLSLTTRDSSFGGHADV 2763
WN+QKS+ K + E + YIP +V +S++ GLNPLECFV S+TTRD+SF +AD+
Sbjct: 780 WNNQKSHILTQKVDDTDESAKKYIPYAVVESSFVKGLNPLECFVHSVTTRDTSFSDNADL 839
Query: 2764 SGTLTRRLMFFMRDLINGYDGTVRSCHGNHVVQFNY-----------CTKDLSDA----- 2895
GTL+RRLMFFMRDL YDGTVR+ +G+ VVQF Y C L
Sbjct: 840 PGTLSRRLMFFMRDLCAAYDGTVRNAYGDQVVQFCYNIDKGTFSPTSCPDKLVSQGSSLP 899
Query: 2896 -SMGGHPVGXXXXXXXXXXXXXXLDQPVSVLEPSPLLTLKKVLDCGVKKSTGSKSASLFL 3072
+GG PVG LDQP+S+LE SPLL LK+VL+CG K+S ++ SLFL
Sbjct: 900 DGIGGQPVGSLSACAISEAAYSALDQPISLLESSPLLNLKRVLECGSKRSNADQTMSLFL 959
Query: 3073 SGRLRRWANGFEYGALEVKDHLESLLFSDIVSEVKICFXXXXXXXXXXXPWACHFHINKE 3252
SG+L R +G EYGALEVK+HLE L+F DIVS V I F PW CHFH+ K+
Sbjct: 960 SGKLVRRRHGQEYGALEVKNHLERLIFKDIVSTVSIIFSPQMSSENRFSPWVCHFHVFKD 1019
Query: 3253 VAKRRRLKLRSVIDALYMNNKFTGVKSKVILPKLHVTSKVCSEVDTRKKSDSVICISAAL 3432
+ RRRL + S+IDAL+M+ K+ LP + VTSK CS +D + D+ CI+ +
Sbjct: 1020 IVTRRRLTVHSIIDALHMHCTNAKRLWKINLPDMQVTSKACSVIDMENEDDT-FCITVTI 1078
Query: 3433 SESLKGFSDLDILRDMVKPVLLQTVIKGFPEFKKVDILWKAEPNHPKSTKRPLGEPFLRV 3612
E +LD+++DMV P LL+ V+KGFPE KKV+ILW + P S K GE +LRV
Sbjct: 1079 VECKTSRIELDVIQDMVIPSLLEAVVKGFPEIKKVEILWNEDFRVPNSHKPAPGELYLRV 1138
Query: 3613 VTSEYCQKTKFWSILMDKCLRISNIIDWERSHPDDIHDCSEAYGIDVGWQCFVNSLHSAI 3792
S TK WS+LM+ CL++ +IIDW RSHPD+I+ A+GID GW+ F+N++ SAI
Sbjct: 1139 SVSGDFGITKLWSVLMNDCLQLMDIIDWTRSHPDNINQFCLAFGIDAGWRFFLNNMKSAI 1198
Query: 3793 SDTGKTILPEHLVVTANCLSATGEFIALNAKGLAEQRKAANVCSPFSQACFSNPSDCLVK 3972
SDTGK+IL EHL + ANCLSATGEF+ LN+KGL +QR+ A V SPF QACFSNPS C VK
Sbjct: 1199 SDTGKSILNEHLHLAANCLSATGEFVGLNSKGLKQQREHAFVSSPFMQACFSNPSACFVK 1258
Query: 3973 AAKMGQMDRLQGSLEALSWGQTPSVGTGCHFDIVYNGKGHEPAKPTDVYTLLSTHVARTK 4152
AAK G D LQG+++ L+WG+ P +GTG FDIVY+ K E A+P DVY LL + K
Sbjct: 1259 AAKTGVADNLQGTIDLLAWGRVPRIGTGGQFDIVYSMKDEELAEPVDVYKLLGDSINSKK 1318
Query: 4153 PD-----------------DPMKQFSEKSIVS--SHFNTKTRKSLLTKMASQHFSEVGIR 4275
D P K S+ TKTR L ++ ++
Sbjct: 1319 QDIEFEVPKVFNPTSEKHSSPFKGALRDSVFDEWKKIETKTRSLLRGRLTLN-----DVQ 1373
Query: 4276 KISQRLKRMLKEYPMNSKLSGEDKSTAIKALQFHPRWEDKIGTGVLDIKVGRHPDHNET- 4452
++ + LK +L++YP++ ++S D T + AL FHP +KIG+G +IKV HPDH ++
Sbjct: 1374 RLERNLKNILRKYPIDHRVSEADWDTLMMALYFHPHRVEKIGSGAKEIKVRHHPDHADSR 1433
Query: 4453 CFFLVRTDGTEEDFSYNKCIHHALEIIAPEKASAYRSR 4566
CFFLVRTD T DFSY KC+ ALEIIAP +A +Y+S+
Sbjct: 1434 CFFLVRTDETTVDFSYRKCVVGALEIIAPCRAQSYKSK 1471
>ref|XP_015901884.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
[Ziziphus jujuba]
Length = 1455
Score = 1327 bits (3434), Expect = 0.0
Identities = 708/1442 (49%), Positives = 932/1442 (64%), Gaps = 24/1442 (1%)
Frame = +1
Query: 313 VTSARLKAIHLNILSDEDAVKISASIIGTVNEVSDAALGLPTTNATECGTCGAKNSKECE 492
V A + + + + D K+S I N V+D LG+P ++ +C TCGA + K CE
Sbjct: 11 VPLALIDGLTFYVSTQADTEKMSVISIDAANGVTDPRLGVPNPSS-QCSTCGASDLKSCE 69
Query: 493 GHFGLINFPFTILNPYFMSEVAQILNKICPGCKSIRRGN-VKKADSASSHHQPKYCRYCN 669
GHFG I FPFTIL+PYF+SEV QILNKICP CKS R+ VK +S + +HQP C YC
Sbjct: 70 GHFGHIKFPFTILHPYFLSEVVQILNKICPRCKSTRQSRQVKGPNSITGYHQPTGCSYCI 129
Query: 670 GKSKYGYPRMKFKVSSKDVFAKTAIIAEVHEMFVNKSSDWVLASDYWDIIPKDPSQAHEG 849
G S MKFKVSSKD+F+++ I EV + + K D+WD IPKD Q
Sbjct: 130 GSSS----TMKFKVSSKDLFSRSTITVEVTDKLLEKFKS---TDDFWDFIPKDAQQEESC 182
Query: 850 LPANKRVLSPAQVYNILKDVCPRTLEALVNRKNSIFLNSLLVTPNSHRVREF------GQ 1011
+ NKRVLS AQV+ +L + P ++ V R +S+FLN VTPNSHRV EF GQ
Sbjct: 183 MKPNKRVLSHAQVHYLLNAIDPDFIKKYVARTDSLFLNCFPVTPNSHRVTEFINSFSNGQ 242
Query: 1012 RITVDETTKMYRKLVDFRGTPNELSARVLDRYKLSKIR-SEKLSNLQKIYEKQXXXXXXX 1188
R+ DE T+ Y+KLVDFRG N+L +RVLD K+SK+ S I +++
Sbjct: 243 RLIFDERTRAYKKLVDFRGAANDLGSRVLDCLKISKLSIGPNPSKDLVIGQQKSIRDSPS 302
Query: 1189 XXXGLKNIKELLLGKRTDHSFRMVVVGDPRIKVNEIGLPTQIAENVLISDHLNIWNWGKL 1368
GL+ IK+++LGKR+DH FRMVVVGDP IK+NEIG+P IAE + +S+ LN WN K
Sbjct: 303 KTCGLRWIKDVILGKRSDHCFRMVVVGDPNIKLNEIGIPCHIAERMHVSERLNRWNLDKS 362
Query: 1369 EQCCEFMLKEKGNFSVLRNGQRVCIWSKDMLQKGDSICRHLLDGDIVLINRPPSIHQHSL 1548
+ C L EKG V RN + V + D L GD+I R L DGDI+LINRPPSIHQHSL
Sbjct: 363 DGCWNLRLIEKGEIYVRRNNKLVRVRPTDELHIGDTIYRPLSDGDILLINRPPSIHQHSL 422
Query: 1549 IALSVKILPINSVASINPLICSPLRGDFDGDCLHGYVPQSVNSRVELTELVSLDKQLVNG 1728
IALSVK+LPI SV SINP+ CSP RGDFDGDCLHGYVPQSV++RVEL ELV+LD+QL N
Sbjct: 423 IALSVKVLPITSVVSINPICCSPFRGDFDGDCLHGYVPQSVDTRVELRELVALDRQLTNR 482
Query: 1729 QDGRNXXXXXXXXXXXXXXXXENGVLLNKTEIQQLQMFCPCIPVLPAIIK-PTSRSSLWT 1905
Q GRN E+ VLLN E+QQL+MFC +LPAIIK P+ +WT
Sbjct: 483 QSGRNLLSFSQDSLTAAHLIMEDSVLLNLFEMQQLEMFCLHQRMLPAIIKAPSLDGPVWT 542
Query: 1906 GKQLFSLLLPPDFEFAYESNGVCIRKGELVSSSHGSAWLNDNSENIFQCLLRHNRDRALD 2085
GKQLFS+LLP F++ SNGVCIR GELVS S GS+WL D N+FQ L+++ LD
Sbjct: 543 GKQLFSMLLPSGFDYVDASNGVCIRNGELVSFSEGSSWLRDIDGNLFQSLIKYCHGHVLD 602
Query: 2086 FLNAGQEVLCEWLSRRGXXXXXXXXXXXXXTESRKNLLDEIHYGLEEAEKLSEVSLLMVG 2265
L+A QEVLCEWLS RG + SR+ ++DEI +GL+EAE+ L+
Sbjct: 603 ILHAAQEVLCEWLSMRGLSVSLADLYLTADSHSREKMMDEIFFGLQEAEQTCAFKRLVNY 662
Query: 2266 GNEDLLVESSDENEDMEKFLKERILIDQQTKAEFFQASLSASKSVLWDMQNLVYKHCGSN 2445
E L+ ++++N+ E +L +QT AE Q S+ A K V D+Q+L YK+ G +
Sbjct: 663 FQEFLIENNTEDNQRNVSIQMEYLLYKKQTSAELSQVSIDAFKQVFRDIQSLAYKYGGKD 722
Query: 2446 NSFMAMLKAGSKGNLQKLFQHSMCLGLQHSLAPLSFPIPRELSCASWNDQKSYYSVHKFH 2625
NS M M KAGSKGNL KL Q+ MCLGLQHSL PLSF +P +LSC +WN+ K+ K
Sbjct: 723 NSLMVMFKAGSKGNLLKLVQNCMCLGLQHSLIPLSFGLPHQLSCIAWNNHKACGLTQKVD 782
Query: 2626 GSQEISDSYIPCTMVANSYLAGLNPLECFVLSLTTRDSSFGGHADVSGTLTRRLMFFMRD 2805
S + SYIPC +V +S+L+GLNPLECFV S+T RDSSF +A++ GTL RRLM+F+RD
Sbjct: 783 ASPKYCKSYIPCAVVESSFLSGLNPLECFVHSVTCRDSSFSDNAELPGTLHRRLMYFLRD 842
Query: 2806 LINGYDGTVRSCHGNHVVQFNYCTKDLSDASMGGHPVGXXXXXXXXXXXXXXLDQPVSVL 2985
L YDGTVR+ +GN +VQF Y + +G PVG LDQP+SVL
Sbjct: 843 LYAAYDGTVRNAYGNQLVQFAYSSDVPVCNVLGSEPVGSLSACAISEAAYSALDQPISVL 902
Query: 2986 EPSPLLTLKKVLDCGVKKSTGSKSASLFLSGRLRRWANGFEYGALEVKDHLESLLFSDIV 3165
E SPLL LK+VL+CG KKS+ ++ SL+LS L R +GFEYGALEVKDHLE L+FS++V
Sbjct: 903 ETSPLLNLKRVLECGSKKSSADQTMSLYLSEELGRQRHGFEYGALEVKDHLEGLIFSEVV 962
Query: 3166 SEVKICFXXXXXXXXXXXPWACHFHINKEVAKRRRLKLRSVIDALYMNNKFTGVKSKVIL 3345
S V I F PW CHFHI K++ +RRRL + S+ID+L++ K +SK
Sbjct: 963 STVMIMFSPQTGSKTCLSPWVCHFHICKDILRRRRLNVHSIIDSLHLRCKSAQTESKTNF 1022
Query: 3346 PKLHVTSKVCSEVDTRKKSDSVICISAALSESLKGFS-DLDILRDMVKPVLLQTVIKGFP 3522
KL + +K CSE DT +K CI ++ E+ K S +LD+++++V P LL TVIKGF
Sbjct: 1023 SKLQIMNKNCSEADTHEKDKDPCCIVVSIPENSKNSSIELDMVQNVVIPSLLGTVIKGFR 1082
Query: 3523 EFKKVDILWKAEPNHPKSTKRPLGEPFLRVVTSEYCQKTKFWSILMDKCLRISNIIDWER 3702
E KKVDILWK P K+ GE +LRV S +T+ WS+L++ L I ++IDW R
Sbjct: 1083 EIKKVDILWKDRPKISKAIHGSSGELYLRVSMSGSTSRTRAWSMLLNDSLPIMDMIDWSR 1142
Query: 3703 SHPDDIHDCSEAYGIDVGWQCFVNSLHSAISDTGKTILPEHLVVTANCLSATGEFIALNA 3882
SHPD+I + +YGID GW+ F+N+L SAISD GKTILPEHL++ A+ LS TG+F+ LNA
Sbjct: 1143 SHPDNIKEFCVSYGIDAGWKYFLNNLESAISDIGKTILPEHLLLVADSLSVTGQFVGLNA 1202
Query: 3883 KGLAEQRKAANVCSPFSQACFSNPSDCLVKAAKMGQMDRLQGSLEALSWGQTPSVGTGCH 4062
KG+A+Q++ A+ SPF +ACFS P +KAAK G D LQGSL+AL+WG+ P++GTG
Sbjct: 1203 KGIAQQKEHASSSSPFMRACFSTPGAHFIKAAKAGVTDCLQGSLDALAWGKVPAMGTGGL 1262
Query: 4063 FDIVYNGKGHEPAKPTDVYTLLSTHVARTKPDDPMKQFSEKSIVSSHFNTK--------- 4215
FDI+Y+GKGHE AKP DVY LL + ++ K ++ +K ++++ S+ ++T+
Sbjct: 1263 FDIIYSGKGHEIAKPADVYDLLGSQISSDKQNE-IKMSTDQNHTSNKYDTQFLYGFGGSV 1321
Query: 4216 ----TRKSLLTKMASQHFSEVGIRKISQRLKRMLKEYPMNSKLSGEDKSTAIKALQFHPR 4383
T+ + + F+ ++ +S +LK +L +YP++ KL DKST + L FHPR
Sbjct: 1322 SKGFTKLGIAKSFIRKFFTPKDVQNLSHKLKHILHKYPIDHKLDDADKSTLMMTLYFHPR 1381
Query: 4384 WEDKIGTGVLDIKVGRHPDH-NETCFFLVRTDGTEEDFSYNKCIHHALEIIAPEKASAYR 4560
+ K+G G+ DIKV HPDH N CF L+RTDGT EDFSY+KC+H ALEI+AP +A +Y
Sbjct: 1382 RDVKVGAGIQDIKVVNHPDHENSRCFMLLRTDGTSEDFSYHKCVHGALEIVAPVRAKSYW 1441
Query: 4561 SR 4566
S+
Sbjct: 1442 SK 1443
>ref|XP_011014513.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Populus
euphratica] gi|743940107|ref|XP_011014514.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1-like [Populus
euphratica] gi|743940109|ref|XP_011014516.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1-like [Populus
euphratica] gi|743940111|ref|XP_011014517.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1-like [Populus
euphratica] gi|743940113|ref|XP_011014518.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1-like [Populus
euphratica] gi|743940115|ref|XP_011014519.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1-like [Populus
euphratica] gi|743940117|ref|XP_011014520.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1-like [Populus
euphratica] gi|743940119|ref|XP_011014522.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1-like [Populus
euphratica]
Length = 1488
Score = 1319 bits (3413), Expect = 0.0
Identities = 714/1470 (48%), Positives = 940/1470 (63%), Gaps = 55/1470 (3%)
Frame = +1
Query: 313 VTSARLKAIHLNILSDEDAVKISASIIGTVNEVSDAALGLPTTNATECGTCGAKNSKECE 492
V SA + I +L++ D K+S I ++EV++ LGLP ++ +C TCG+++ K CE
Sbjct: 11 VPSALITGIAFGVLTEADMEKLSVLNIDALSEVTNPKLGLPNPSS-QCPTCGSRDLKSCE 69
Query: 493 GHFGLINFPFTILNPYFMSEVAQILNKICPGCKSIRRGNVKKADSASSHHQPKYCRYCNG 672
GHFG+INFP+TI++PYF+SEV QILNKICPGCKSIR + + + Q K C+YC G
Sbjct: 70 GHFGVINFPYTIVHPYFLSEVVQILNKICPGCKSIRLAKATELIT-KENPQRKGCKYCAG 128
Query: 673 KSKYGYPRMKFKVSSKDVFAKTAIIAEVHEMFVNKSSDW---VLASDYWDIIPKDPSQAH 843
S YP MKFKVSSK++F KTAIIAE+ E NK +LA+DYWDI PKD +
Sbjct: 129 NSLGWYPPMKFKVSSKEIFRKTAIIAEIRETLSNKPQKGFKKILAADYWDIFPKDEQEEE 188
Query: 844 EGLPA--NKRVLSPAQVYNILKDVCPRTLEALVNRKNSIFLNSLLVTPNSHRVREF---- 1005
E A N+RVLS +QV ++LKDV P ++ + + N+IFLN VTPNSHRV E
Sbjct: 189 EETNAKPNRRVLSHSQVRHMLKDVDPNLIKLSILKTNTIFLNCFPVTPNSHRVTEVTHAF 248
Query: 1006 --GQRITVDETTKMYRKLVDFRGTPNELSARVLDRYKLSKIRSEKLSNLQK-IYEKQXXX 1176
GQR+ DE T+ Y+K+VDFRG N LS V+D K SK+ +K N+ + +
Sbjct: 249 SNGQRLIFDERTRAYKKMVDFRGVANTLSFHVMDCLKTSKLNPDKSGNIDPWTAQPKKSN 308
Query: 1177 XXXXXXXGLKNIKELLLGKRTDHSFRMVVVGDPRIKVNEIGLPTQIAENVLISDHLNIWN 1356
GL+ IK+++LGKR DHSFRMV+VGDP ++++EIG+P IAE + +S+ L WN
Sbjct: 309 DYVNNASGLRWIKDVILGKRNDHSFRMVLVGDPNLQLHEIGIPCHIAERLQVSESLTAWN 368
Query: 1357 WGKLEQCCEFMLKEKGNFSVLRNGQRVCIWSKDMLQKGDSICRHLLDGDIVLINRPPSIH 1536
W KL C E EKG+ V R G V + L+ GD I R L DGD VLINRPPSIH
Sbjct: 369 WEKLNACFEKSRFEKGDMHVRREGNLVRVRHMKELRLGDIIYRPLNDGDTVLINRPPSIH 428
Query: 1537 QHSLIALSVKILPINSVASINPLICSPLRGDFDGDCLHGYVPQSVNSRVELTELVSLDKQ 1716
QHSLIAL VK+LP+ SV +INPL C P R DFDGDCLHGYVPQSV++RVELTELVSLDKQ
Sbjct: 429 QHSLIALCVKVLPVPSVLAINPLCCPPFRADFDGDCLHGYVPQSVDTRVELTELVSLDKQ 488
Query: 1717 LVNGQDGRNXXXXXXXXXXXXXXXXENGVLLNKTEIQQLQMFCPCIPVLPAIIKPTSRSS 1896
L N Q GRN E+ V L+ E+QQLQMF P +LPA+ P++ +
Sbjct: 489 LTNWQSGRNLLSLSQDSLTAAHLVLEDDVFLSSFELQQLQMFRPERFLLPAVKAPSANAL 548
Query: 1897 LWTGKQLFSLLLPPDFEFAYESNGVCIRKGELVSSSHGSAWLNDNSENIFQCLLRHNRDR 2076
+WTG+QL S+LLP F+ + S VCIR G+LVSS GS WL D N+FQ L++H +
Sbjct: 549 VWTGRQLISMLLPVGFDHDFPSCNVCIRDGDLVSSE-GSFWLWDTDGNLFQSLVKHCHGQ 607
Query: 2077 ALDFLNAGQEVLCEWLSRRGXXXXXXXXXXXXXTESRKNLLDEIHYGLEEAEKLSEVSLL 2256
LDFL A Q VLCEWLS RG + SRKN++DEI YGL++A+ + L
Sbjct: 608 VLDFLYAAQRVLCEWLSMRGLSVSLSDLYLCPDSNSRKNMMDEIWYGLQDADYACNLKHL 667
Query: 2257 MVGGNEDLLVESSDE---NEDMEKFLK--------------ERILIDQQTKAEFFQASLS 2385
MV D L +++E N + +FL ER+ ++Q A Q+S+
Sbjct: 668 MVDSCRDFLTGNNEEDQCNVERLRFLSGCSEEDYCVMAFDGERLCYEKQRSAALSQSSVD 727
Query: 2386 ASKSVLWDMQNLVYKHCGSNNSFMAMLKAGSKGNLQKLFQHSMCLGLQHSLAPLSFPIPR 2565
A + V D+Q+LVY++ +NSF+AM KAGSKGNL KL QHSMCLGLQH+LA LSF +P
Sbjct: 728 AFRLVFRDIQSLVYRYASKDNSFLAMFKAGSKGNLLKLVQHSMCLGLQHALASLSFRMPH 787
Query: 2566 ELSCASWNDQKSYYSVHKFHGSQEISDSYIPCTMVANSYLAGLNPLECFVLSLTTRDSSF 2745
+LSCA WN QK+ + E + YIP +V S+L+GLNP+ECFV S+T+RDSSF
Sbjct: 788 QLSCAGWNKQKA-------DDATESAKRYIPHAVVEGSFLSGLNPIECFVHSVTSRDSSF 840
Query: 2746 GGHADVSGTLTRRLMFFMRDLINGYDGTVRSCHGNHVVQFNYCTKDLSDAS--------- 2898
+AD+ GTL RR+MFFMRDL YDGTVR+ +GN +VQF+Y D+ +S
Sbjct: 841 SDNADLPGTLFRRMMFFMRDLHGAYDGTVRNAYGNQLVQFSYNIDDMDPSSSVDEINKGD 900
Query: 2899 -MGGHPVGXXXXXXXXXXXXXXLDQPVSVLEPSPLLTLKKVLDCGVKKSTGSKSASLFLS 3075
+ G PVG LDQP+S+LE SPLL LK VL+CG+K+++ ++ SLFLS
Sbjct: 901 GIAGRPVGPLAACAISEAAYSALDQPISLLEKSPLLNLKNVLECGLKRNSAHQTMSLFLS 960
Query: 3076 GRLRRWANGFEYGALEVKDHLESLLFSDIVSEVKICFXXXXXXXXXXXPWACHFHINKEV 3255
+L R +GFEY ALEV++HLE LLFSDIVS V+I F PW CHFH+ KE+
Sbjct: 961 EKLGRQRHGFEYAALEVQNHLERLLFSDIVSFVRIIFSPQSDGRMHFSPWVCHFHVYKEI 1020
Query: 3256 AKRRRLKLRSVIDALYMNNKFTGVKSKVILPKLHVTSKVCSEVDTRKKSDSVICISAALS 3435
K+R LK+ +IDAL KSK PK+ +TS+ C+ DT K+ CI+ +
Sbjct: 1021 VKKRSLKMHYIIDALDKQ-----CKSKTRFPKVQITSRYCTVADTWKEKKETFCITVTIV 1075
Query: 3436 ESLKG-FSDLDILRDMVKPVLLQTVIKGFPEFKKVDILWKAEPNHPKSTKRPLGEPFLRV 3612
E+ K F +L+ ++D++ P LL+TVIKGF E +KVDILW +P PKS R GE FLRV
Sbjct: 1076 ETSKNEFIELETIQDLMIPFLLETVIKGFMEIRKVDILWNDKPKIPKSHNRLRGELFLRV 1135
Query: 3613 VTSEYCQKTKFWSILMDKCLRISNIIDWERSHPDDIHDCSEAYGIDVGWQCFVNSLHSAI 3792
S KT+ W+ LMD CL I +IIDW RSHPD+IH+C AYGID GW+ F+N+L SA+
Sbjct: 1136 HMSRGSDKTRLWNQLMDDCLSIMDIIDWARSHPDNIHECCLAYGIDAGWKFFLNNLQSAM 1195
Query: 3793 SDTGKTILPEHLVVTANCLSATGEFIALNAKGLAEQRKAANVCSPFSQACFSNPSDCLVK 3972
SD GKT+LPEHL++ ANCLS TGEF+ LNAKGL QR+ A+V +PF QACFSNP DC ++
Sbjct: 1196 SDVGKTLLPEHLLLVANCLSVTGEFVGLNAKGLKRQREHASVSTPFVQACFSNPGDCFIR 1255
Query: 3973 AAKMGQMDRLQGSLEALSWGQTPSVGTGCHFDIVYNGKGHEPAKPTDVYTLLSTHVART- 4149
AAK G +D LQGS++AL+WG+ P++GTG FDIVY+GKG E +KP DVY LL + +
Sbjct: 1256 AAKAGVVDDLQGSIDALAWGKIPAIGTG-QFDIVYSGKGLEFSKPVDVYNLLGSQMITPG 1314
Query: 4150 -------------KPDDPMKQFSEKSIVSSHFNTKTRKSLLTKMASQHFSEVGIRKISQR 4290
K D QF K K ++ + + + I+++S
Sbjct: 1315 QNTEFGVLDAQIYKSDKCGAQFLHKFGGCGRKGFKVKEGIPRSFLRRLLTYDDIQRMSYT 1374
Query: 4291 LKRMLKEYPMNSKLSGEDKSTAIKALQFHPRWEDKIGTGVLDIKVGRHPDHNET-CFFLV 4467
++++LK+Y ++ +L+ DKS + L FHPR ++KIG G DIKV HP++ +T CF LV
Sbjct: 1375 VRKILKKYSVDQQLNERDKSVLMMTLYFHPRRDEKIGIGAKDIKVINHPEYQDTRCFSLV 1434
Query: 4468 RTDGTEEDFSYNKCIHHALEIIAPEKASAY 4557
RTDGT EDFSY KC+H+ALEIIAP++A Y
Sbjct: 1435 RTDGTIEDFSYRKCLHNALEIIAPQRAQRY 1464
>ref|XP_011029161.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Populus
euphratica] gi|743852096|ref|XP_011029162.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Populus
euphratica] gi|743852100|ref|XP_011029163.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Populus
euphratica] gi|743852104|ref|XP_011029164.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Populus
euphratica] gi|743852108|ref|XP_011029165.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Populus
euphratica] gi|743852112|ref|XP_011029166.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Populus
euphratica] gi|743852116|ref|XP_011029168.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Populus
euphratica] gi|743852120|ref|XP_011029169.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Populus
euphratica] gi|743852124|ref|XP_011029170.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Populus
euphratica]
Length = 1488
Score = 1315 bits (3404), Expect = 0.0
Identities = 713/1470 (48%), Positives = 939/1470 (63%), Gaps = 55/1470 (3%)
Frame = +1
Query: 313 VTSARLKAIHLNILSDEDAVKISASIIGTVNEVSDAALGLPTTNATECGTCGAKNSKECE 492
V SA + I +L++ D K+S I ++EV++ LGLP ++ +C TCG+++ K CE
Sbjct: 11 VPSALITGIAFGVLTEADMEKLSVLNIDALSEVTNPKLGLPNPSS-QCPTCGSRDLKSCE 69
Query: 493 GHFGLINFPFTILNPYFMSEVAQILNKICPGCKSIRRGNVKKADSASSHHQPKYCRYCNG 672
GHFG+INFP+TI++PYF+SEV QILNKICPGCKSIR + + + Q K C+YC G
Sbjct: 70 GHFGVINFPYTIVHPYFLSEVVQILNKICPGCKSIRLAKATELIT-KENPQRKGCKYCAG 128
Query: 673 KSKYGYPRMKFKVSSKDVFAKTAIIAEVHEMFVNKSSDW---VLASDYWDIIPKDPSQAH 843
S YP MKFKVSSK++F KTAIIAE+ E NK +LA+DYWDI PKD +
Sbjct: 129 NSLGWYPPMKFKVSSKEIFRKTAIIAEIRETLSNKPQKGFKKILAADYWDIFPKDEQEEE 188
Query: 844 EGLPA--NKRVLSPAQVYNILKDVCPRTLEALVNRKNSIFLNSLLVTPNSHRVREF---- 1005
E A N+RVLS +QV ++LKDV P ++ + + N+IFLN VTPNSHRV E
Sbjct: 189 EETNAKPNRRVLSHSQVRHMLKDVDPNLIKLSILKTNTIFLNCFPVTPNSHRVTEVTHAF 248
Query: 1006 --GQRITVDETTKMYRKLVDFRGTPNELSARVLDRYKLSKIRSEKLSNLQK-IYEKQXXX 1176
GQR+ D T+ Y+K+VDFRG N LS V+D K SK+ +K N+ + +
Sbjct: 249 SNGQRLIFDARTRAYKKMVDFRGVANTLSFHVMDCLKTSKLNPDKSGNIDPWTAQPKKSN 308
Query: 1177 XXXXXXXGLKNIKELLLGKRTDHSFRMVVVGDPRIKVNEIGLPTQIAENVLISDHLNIWN 1356
GL+ IK+++LGKR DHSFRMV+VGDP ++++EIG+P IAE + +S+ L WN
Sbjct: 309 DYVNNASGLRWIKDVILGKRNDHSFRMVLVGDPNLQLHEIGIPCHIAERLQVSESLTAWN 368
Query: 1357 WGKLEQCCEFMLKEKGNFSVLRNGQRVCIWSKDMLQKGDSICRHLLDGDIVLINRPPSIH 1536
W KL C E EKG+ V R G V + L+ GD I R L DGD VLINRPPSIH
Sbjct: 369 WEKLNACFEKSRFEKGDMHVRREGNLVRVRHMKELRLGDIIYRPLDDGDTVLINRPPSIH 428
Query: 1537 QHSLIALSVKILPINSVASINPLICSPLRGDFDGDCLHGYVPQSVNSRVELTELVSLDKQ 1716
QHSLIAL VK+LP+ SV +INPL C P R DFDGDCLHGYVPQSV++RVELTELVSLDKQ
Sbjct: 429 QHSLIALCVKVLPVPSVLAINPLCCPPFRADFDGDCLHGYVPQSVDTRVELTELVSLDKQ 488
Query: 1717 LVNGQDGRNXXXXXXXXXXXXXXXXENGVLLNKTEIQQLQMFCPCIPVLPAIIKPTSRSS 1896
L N Q GRN E+ V L+ E+QQLQMF P +LPA+ P++ +
Sbjct: 489 LTNWQSGRNLLSLSQDSLTAAHLVLEDDVFLSSFELQQLQMFRPERFLLPAVKAPSANAL 548
Query: 1897 LWTGKQLFSLLLPPDFEFAYESNGVCIRKGELVSSSHGSAWLNDNSENIFQCLLRHNRDR 2076
+WTGKQL S+LLP F+ + S VCIR G+LVSS GS WL D N+FQ L++H +
Sbjct: 549 VWTGKQLISMLLPVGFDHDFPSCNVCIRDGDLVSSE-GSFWLWDTDGNLFQSLVKHCHGQ 607
Query: 2077 ALDFLNAGQEVLCEWLSRRGXXXXXXXXXXXXXTESRKNLLDEIHYGLEEAEKLSEVSLL 2256
LDFL A Q VLCEWLS RG + SRKN++DEI YGL++A+ + L
Sbjct: 608 VLDFLYAAQRVLCEWLSMRGLSVSLSDLYLCPDSNSRKNMMDEIWYGLQDADYACNLKHL 667
Query: 2257 MVGGNEDLLVESSDE---NEDMEKFLK--------------ERILIDQQTKAEFFQASLS 2385
MV D L +++E N + +FL ER+ ++Q A Q+S+
Sbjct: 668 MVDSCRDFLTGNNEEDQCNVERLRFLSGCSEEDYCVMAFDGERLCYEKQRSAALSQSSVD 727
Query: 2386 ASKSVLWDMQNLVYKHCGSNNSFMAMLKAGSKGNLQKLFQHSMCLGLQHSLAPLSFPIPR 2565
A + V D+Q+LVY++ +NSF+AM KAGSKGNL KL QHSMCLGLQH+LA LSF +P
Sbjct: 728 AFRLVFRDIQSLVYRYASKDNSFLAMFKAGSKGNLLKLVQHSMCLGLQHALASLSFRMPH 787
Query: 2566 ELSCASWNDQKSYYSVHKFHGSQEISDSYIPCTMVANSYLAGLNPLECFVLSLTTRDSSF 2745
+LSCA W+ QK+ + E + YIP +V S+L+GLNP+ECFV S+T+RDSSF
Sbjct: 788 QLSCAGWHKQKA-------DDATESAKRYIPHAVVEGSFLSGLNPIECFVHSVTSRDSSF 840
Query: 2746 GGHADVSGTLTRRLMFFMRDLINGYDGTVRSCHGNHVVQFNYCTKDLSDAS--------- 2898
+AD+ GTL RR+MFFMRDL YDGTVR+ +GN +VQF+Y D+ +S
Sbjct: 841 SDNADLPGTLFRRMMFFMRDLHGAYDGTVRNAYGNQLVQFSYNIDDMDPSSSVDEINKGD 900
Query: 2899 -MGGHPVGXXXXXXXXXXXXXXLDQPVSVLEPSPLLTLKKVLDCGVKKSTGSKSASLFLS 3075
+ G PVG LDQP+S+LE SPLL LK VL+CG+K+++ ++ SLFLS
Sbjct: 901 GIAGRPVGPLAACAISEAAYSALDQPISLLEKSPLLNLKNVLECGLKRNSAHQTMSLFLS 960
Query: 3076 GRLRRWANGFEYGALEVKDHLESLLFSDIVSEVKICFXXXXXXXXXXXPWACHFHINKEV 3255
+L R +GFEY ALEV++HLE LLFSDIVS V+I F PW CHFH+ KE+
Sbjct: 961 EKLGRQRHGFEYAALEVQNHLERLLFSDIVSFVRIIFSPQSDGRMHFSPWVCHFHVYKEI 1020
Query: 3256 AKRRRLKLRSVIDALYMNNKFTGVKSKVILPKLHVTSKVCSEVDTRKKSDSVICISAALS 3435
K+R LK+ +IDAL KSK PK+ +TS+ C+ DT K+ CI+ +
Sbjct: 1021 VKKRSLKMHYIIDALDKQ-----CKSKTRFPKVQITSRYCTVADTWKEKKETFCITVTIV 1075
Query: 3436 ESLKG-FSDLDILRDMVKPVLLQTVIKGFPEFKKVDILWKAEPNHPKSTKRPLGEPFLRV 3612
E+ K F +L+ ++D++ P LL+TVIKGF E +KVDILW +P PKS R GE FLRV
Sbjct: 1076 ETSKNEFIELETIQDLMIPFLLETVIKGFMEIRKVDILWNDKPKIPKSHNRLRGELFLRV 1135
Query: 3613 VTSEYCQKTKFWSILMDKCLRISNIIDWERSHPDDIHDCSEAYGIDVGWQCFVNSLHSAI 3792
S KT+ W+ LMD CL I +IIDW RSHPD+IH+C AYGID GW+ F+N+L SA+
Sbjct: 1136 HMSRGSDKTRLWNQLMDDCLSIMDIIDWARSHPDNIHECCLAYGIDAGWKFFLNNLQSAM 1195
Query: 3793 SDTGKTILPEHLVVTANCLSATGEFIALNAKGLAEQRKAANVCSPFSQACFSNPSDCLVK 3972
SD GKT+LPEHL++ ANCLS TGEF+ LNAKGL QR+ A+V +PF QACFSNP DC ++
Sbjct: 1196 SDVGKTLLPEHLLLVANCLSVTGEFVGLNAKGLKRQREHASVSTPFVQACFSNPGDCFIR 1255
Query: 3973 AAKMGQMDRLQGSLEALSWGQTPSVGTGCHFDIVYNGKGHEPAKPTDVYTLLSTHVART- 4149
AAK G +D LQGS++AL+WG+ P++GTG FDIVY+GKG E +KP DVY LL + +
Sbjct: 1256 AAKAGVVDDLQGSIDALAWGKIPAIGTG-QFDIVYSGKGLEFSKPVDVYNLLGSQMITPG 1314
Query: 4150 -------------KPDDPMKQFSEKSIVSSHFNTKTRKSLLTKMASQHFSEVGIRKISQR 4290
K D QF K K ++ + + + I+++S
Sbjct: 1315 QNTEFGVLDAQIYKSDKCGAQFLHKFGGCGRKGFKVKEGIPRSFLRRLLTYDDIQRMSYT 1374
Query: 4291 LKRMLKEYPMNSKLSGEDKSTAIKALQFHPRWEDKIGTGVLDIKVGRHPDHNET-CFFLV 4467
++++LK+Y ++ +L+ DKS + L FHPR ++KIG G DIKV HP++ +T CF LV
Sbjct: 1375 VRKILKKYSVDQQLNERDKSVLMMTLYFHPRRDEKIGIGAKDIKVINHPEYQDTRCFSLV 1434
Query: 4468 RTDGTEEDFSYNKCIHHALEIIAPEKASAY 4557
RTDGT EDFSY KC+H+ALEIIAP++A Y
Sbjct: 1435 RTDGTIEDFSYRKCLHNALEIIAPQRAQRY 1464