BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia27_contig00011331
         (719 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotei...   309   3e-99
gb|KYP71220.1| Retrovirus-related Pol polyprotein from transposo...   216   2e-62
gb|KYP46254.1| Retrovirus-related Pol polyprotein from transposo...   211   4e-61
gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposo...   216   5e-61
gb|KYP50611.1| Retrovirus-related Pol polyprotein from transposo...   205   2e-60
gb|KYP48029.1| Retrovirus-related Pol polyprotein from transposo...   209   3e-60
gb|KYP59893.1| Retrovirus-related Pol polyprotein from transposo...   206   1e-59
gb|KYP58493.1| Retrovirus-related Pol polyprotein from transposo...   197   6e-59
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        204   6e-57
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]   204   8e-57
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   203   2e-56
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]   203   2e-56
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   202   3e-56
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi...   202   3e-56
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   202   4e-56
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   202   5e-56
dbj|BAH90873.1| Os01g0116166 [Oryza sativa Japonica Group]            199   6e-56
gb|KYP68607.1| Retrovirus-related Pol polyprotein from transposo...   201   1e-55
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   200   2e-55
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     200   2e-55

>ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
           1-94 [Erythranthe guttata]
          Length = 598

 Score =  309 bits (792), Expect = 3e-99
 Identities = 155/249 (62%), Positives = 181/249 (72%), Gaps = 10/249 (4%)
 Frame = +1

Query: 1   FDSGYAYTLKNVRHVPDLCNNLMSCAALEDDGLEGRFGNGLMKILKGSLVIFKAVKRNNL 180
           F SG   TLKNVRHVP L +NL+SCA LEDDG  G +G+G M I+KGS  +FKA++  N+
Sbjct: 65  FVSGSVLTLKNVRHVPTLSHNLISCAVLEDDGFRGDWGDGCMNIMKGSRYLFKALRMGNM 124

Query: 181 YVCVGKPVSFAQNSVNVVQEDKTDLWHKRLGHMSAKGLEILQKNGYFGXXXXXXXXXXXK 360
           YVC  +    +  S+NVVQ D ++LWHK LGHMS K L IL KN YFG            
Sbjct: 125 YVCSAE----SSASMNVVQNDLSELWHKGLGHMSNKWLSILHKNQYFGNDKVSSVTLCDS 180

Query: 361 ----------FPVSPFPNQSVCTDVLEYLHADVWGPSSEPTQGGNRYFLSIIDDFSRKVW 510
                     FP  P PN S CT++LEY+HADVWGP+S PT GGNRYFLSIIDD+SRKV+
Sbjct: 181 CILGKQTHVLFPEYPSPNLSRCTEILEYIHADVWGPTSVPTYGGNRYFLSIIDDYSRKVF 240

Query: 511 VFLMKNKSDVFEKFKNWKTLIENQTGKRIRTLRTDNGLEFCNNLFDNLCAEFGIRRHKTV 690
           VFL+K KSDVF+KFK WKTLIENQTGKRI+TLRTDNG+EFCN  FDNLCA  GIRRHK+V
Sbjct: 241 VFLLKQKSDVFDKFKTWKTLIENQTGKRIKTLRTDNGIEFCNLEFDNLCANSGIRRHKSV 300

Query: 691 PYTPQQNGV 717
            +TPQQNGV
Sbjct: 301 VHTPQQNGV 309


>gb|KYP71220.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 690

 Score =  216 bits (549), Expect = 2e-62
 Identities = 110/243 (45%), Positives = 147/243 (60%), Gaps = 7/243 (2%)
 Frame = +1

Query: 10   GYAYTLKNVRHVPDLCNNLMSCAALEDDGLEGRFGNGLMKILKGSLVIFKAVKRNNLYVC 189
            G   TL NVR +PDL  NL+S   LE  G +     G++K+ KG++V+ KA +  +LY+ 
Sbjct: 338  GTIKTLSNVRFIPDLKRNLISLGTLESLGCKYSAEGGVLKVSKGAIVLLKANRIGSLYIL 397

Query: 190  VGKPVS-FAQNSVNVVQEDKTDLWHKRLGHMSAKGLEILQKNGYFGXXXXXXXXXXXKFP 366
             G  V+  A  S ++  +D T LWH RLGHMS KG+ +L K G  G              
Sbjct: 398  QGSIVTGSAAVSSSMSDKDATKLWHMRLGHMSEKGMHLLSKQGLLGNQGIGKLEFCEHCV 457

Query: 367  VSPFPNQSVCT------DVLEYLHADVWGPSSEPTQGGNRYFLSIIDDFSRKVWVFLMKN 528
                   S  T        L+Y+H+D+WGPS  P+ GG RY ++IIDDFSRKVWV+ +++
Sbjct: 458  FGKQKRVSFSTATHRTKGTLDYIHSDLWGPSKVPSYGGCRYMMTIIDDFSRKVWVYFLRH 517

Query: 529  KSDVFEKFKNWKTLIENQTGKRIRTLRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQ 708
            K++ F  FK WKTL+E QTGK+++ LRTDNGLEFC   F+  CA  GI RHKT+P  PQQ
Sbjct: 518  KNETFPTFKKWKTLVETQTGKKVKKLRTDNGLEFCEGDFNEFCANHGIARHKTIPGKPQQ 577

Query: 709  NGV 717
            NGV
Sbjct: 578  NGV 580


>gb|KYP46254.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 609

 Score =  211 bits (536), Expect = 4e-61
 Identities = 113/245 (46%), Positives = 145/245 (59%), Gaps = 9/245 (3%)
 Frame = +1

Query: 10  GYAYTLKNVRHVPDLCNNLMSCAALEDDGLEGRFGNGLMKILKGSLVIFKAVKRNNLYVC 189
           G   TL  VRHVPDL  NL+S   L   G +     G+M+I KGS V+ + +K+ NLY+ 
Sbjct: 265 GVIRTLTEVRHVPDLKKNLISVGVLHTKGFKCNVEGGVMEISKGSTVVIRGIKKGNLYML 324

Query: 190 VGKPVSFAQNSVNVVQE---DKTDLWHKRLGHMSAKGLEILQKNGYFGXXXXXXXXXXXK 360
            G   +    SV+V  +   D T LWH RLGHMS +G+ +L+K    G            
Sbjct: 325 QGS-TNLISESVSVADKHTPDLTHLWHMRLGHMSERGMMVLRKQKLLGDHTVKELKFCEH 383

Query: 361 FPVSP-----FPN-QSVCTDVLEYLHADVWGPSSEPTQGGNRYFLSIIDDFSRKVWVFLM 522
             V       FP  Q      L+Y+H+D WGPS  P+ GG RYFLSIIDD+S   W+F+M
Sbjct: 384 CVVGKHHRIKFPKAQHTTKSTLDYVHSDCWGPSRVPSLGGGRYFLSIIDDYSGMTWIFIM 443

Query: 523 KNKSDVFEKFKNWKTLIENQTGKRIRTLRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTP 702
           K+K+  F+ FK WK L+ENQTGKRI+ LRTDNGLEFC+  F++ C + GI R  TV  TP
Sbjct: 444 KHKNQAFKYFKEWKILVENQTGKRIKRLRTDNGLEFCSAEFNDYCKKEGIVRQYTVRNTP 503

Query: 703 QQNGV 717
           QQNGV
Sbjct: 504 QQNGV 508


>gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1032

 Score =  216 bits (549), Expect = 5e-61
 Identities = 110/243 (45%), Positives = 147/243 (60%), Gaps = 7/243 (2%)
 Frame = +1

Query: 10  GYAYTLKNVRHVPDLCNNLMSCAALEDDGLEGRFGNGLMKILKGSLVIFKAVKRNNLYVC 189
           G   TL NVR +PDL  NL+S   LE  G +     G++K+ KG++V+ KA +  +LY+ 
Sbjct: 42  GTIKTLSNVRFIPDLKRNLISLGTLESLGCKYSAEGGVLKVSKGAIVLLKANRIGSLYIL 101

Query: 190 VGKPVS-FAQNSVNVVQEDKTDLWHKRLGHMSAKGLEILQKNGYFGXXXXXXXXXXXKFP 366
            G  V+  A  S ++  +D T LWH RLGHMS KG+ +L K G  G              
Sbjct: 102 QGSIVTGSAAVSSSMSDKDATKLWHMRLGHMSEKGMHLLSKQGLLGNQGIGKLEFCEHCV 161

Query: 367 VSPFPNQSVCT------DVLEYLHADVWGPSSEPTQGGNRYFLSIIDDFSRKVWVFLMKN 528
                  S  T        L+Y+H+D+WGPS  P+ GG RY ++IIDDFSRKVWV+ +++
Sbjct: 162 FGKQKRVSFSTATHRTKGTLDYIHSDLWGPSKVPSYGGCRYMMTIIDDFSRKVWVYFLRH 221

Query: 529 KSDVFEKFKNWKTLIENQTGKRIRTLRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQ 708
           K++ F  FK WKTL+E QTGK+++ LRTDNGLEFC   F+  CA  GI RHKT+P  PQQ
Sbjct: 222 KNETFPTFKKWKTLVETQTGKKVKKLRTDNGLEFCEGDFNEFCANHGIARHKTIPGKPQQ 281

Query: 709 NGV 717
           NGV
Sbjct: 282 NGV 284


>gb|KYP50611.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 448

 Score =  205 bits (521), Expect = 2e-60
 Identities = 110/249 (44%), Positives = 146/249 (58%), Gaps = 13/249 (5%)
 Frame = +1

Query: 10  GYAYTLKNVRHVPDLCNNLMSCAALEDDGLEGRFGNGLMKILKGSLVIFKAVKRNNLYVC 189
           G   TL  VRHVPDL  NL+S   L+  G +    NG+M+I +GS V+ +  K+ NLY+ 
Sbjct: 104 GVIRTLTEVRHVPDLKKNLISVGVLDSKGFKCNVKNGVMEIKRGSTVVMRGFKKGNLYML 163

Query: 190 VGKPVSFAQNSVNVVQE---DKTDLWHKRLGHMSAKGLEILQKNGYFGXXXXXXXXXXX- 357
            G   S ++ SV+V ++   D T LWH RLGHMS +G+ IL +    G            
Sbjct: 164 QGSTSSISE-SVSVAEKNIPDLTYLWHMRLGHMSERGMMILSRQQLLGNHTVKELRFCEH 222

Query: 358 ---------KFPVSPFPNQSVCTDVLEYLHADVWGPSSEPTQGGNRYFLSIIDDFSRKVW 510
                    KFP +    +S     L+Y+H+D WGPS  P+ GG RYFLSIIDD+SR  W
Sbjct: 223 CVFGKQHRIKFPKAQHSTKST----LDYIHSDCWGPSQVPSLGGGRYFLSIIDDYSRMTW 278

Query: 511 VFLMKNKSDVFEKFKNWKTLIENQTGKRIRTLRTDNGLEFCNNLFDNLCAEFGIRRHKTV 690
           +F+ K+K+  F+ FK WK L+E Q  KR++ LRTDNGLEFC+  F++ C   GI R  TV
Sbjct: 279 IFITKHKNQAFKCFKEWKILMEKQISKRVKRLRTDNGLEFCSKEFNDFCKAEGIARQYTV 338

Query: 691 PYTPQQNGV 717
             TPQQNGV
Sbjct: 339 RNTPQQNGV 347


>gb|KYP48029.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 634

 Score =  209 bits (531), Expect = 3e-60
 Identities = 107/241 (44%), Positives = 145/241 (60%), Gaps = 13/241 (5%)
 Frame = +1

Query: 34  VRHVPDLCNNLMSCAALEDDGLEGRFGNGLMKILKGSLVIFKAVKRNNLYVC-VGKPVSF 210
           VRHVP+L  NL+S   L+  G   +   G +++ KGSLVI K V++N LY   VG+ V  
Sbjct: 1   VRHVPELKRNLISLGTLDQGGYAYKCDQGSLRVFKGSLVILKGVRKNWLYYSLVGQTVVA 60

Query: 211 AQNSV------NVVQEDKTDLWHKRLGHMSAKGLEILQKNGYFGXXXXXXXXXXXKFPVS 372
             ++V       +  +  T LWH RLGH+S +GL+ L K G FG              + 
Sbjct: 61  RSSNVIGSSNATITSDVATKLWHHRLGHVSQRGLDELAKQGVFGRDKIEPLEFCEHCVMG 120

Query: 373 PFPNQSVCTD------VLEYLHADVWGPSSEPTQGGNRYFLSIIDDFSRKVWVFLMKNKS 534
                   T       VL+Y+H+D+WGPS   + GG RYFLSI+DDFSRKVWV+ +K K+
Sbjct: 121 KASRLKFSTSTHSSGGVLDYVHSDLWGPSRTESHGGARYFLSIVDDFSRKVWVYFLKQKN 180

Query: 535 DVFEKFKNWKTLIENQTGKRIRTLRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQNG 714
           +VF++FK WK L+E QTG+ ++ LRTDNGLEFC+  F   C E G+ RHKTV  TPQ+NG
Sbjct: 181 EVFDRFKEWKVLVETQTGRNLKKLRTDNGLEFCDEKFSKFCRENGVARHKTVRGTPQKNG 240

Query: 715 V 717
           +
Sbjct: 241 L 241


>gb|KYP59893.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 593

 Score =  206 bits (525), Expect = 1e-59
 Identities = 110/245 (44%), Positives = 145/245 (59%), Gaps = 9/245 (3%)
 Frame = +1

Query: 10   GYAYTLKNVRHVPDLCNNLMSCAALEDDGLEGRFGNGLMKILKGSLVIFKAVKRNNLYVC 189
            G   TL  VRHVPDL  NL+S   L+  G +     G+M+I KGS ++ + +K+ NLY+ 
Sbjct: 317  GVIRTLTEVRHVPDLKKNLISVGVLDTKGFKCNVEGGVMEINKGSTIVIRGIKKGNLYML 376

Query: 190  VGKPVSFAQNSVNVVQE---DKTDLWHKRLGHMSAKGLEILQKNGYFGXXXXXXXXXXX- 357
             G   +    S++V  +   D T LWH RLGHMS +G+ +L K                 
Sbjct: 377  QGS-TNLISESISVADKHTLDLTRLWHMRLGHMSERGMMVLSKQKLLRDHTVKELKFCEH 435

Query: 358  ----KFPVSPFPN-QSVCTDVLEYLHADVWGPSSEPTQGGNRYFLSIIDDFSRKVWVFLM 522
                K   S FP  Q      L+Y+H++ WGPS  P+ GG RYFLSIIDD+SR  W+F+M
Sbjct: 436  CVLGKHHRSKFPKAQHTTKSTLDYVHSNCWGPSRVPSLGGGRYFLSIIDDYSRMTWIFIM 495

Query: 523  KNKSDVFEKFKNWKTLIENQTGKRIRTLRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTP 702
            K+K+  F+ FK WK L+ENQTGKRI+ LRTDN LEFC+  F++ C + GI R  TV  TP
Sbjct: 496  KHKNQAFKYFKEWKILVENQTGKRIKRLRTDNSLEFCSAEFNDYCKKEGIVRQYTVRNTP 555

Query: 703  QQNGV 717
            QQNGV
Sbjct: 556  QQNGV 560


>gb|KYP58493.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 313

 Score =  197 bits (501), Expect = 6e-59
 Identities = 98/234 (41%), Positives = 140/234 (59%), Gaps = 8/234 (3%)
 Frame = +1

Query: 40  HVPDLCNNLMSCAALEDDGLEGRFGNGLMKILKGSLVIFKAVKRNNLYVCVGKPVSFAQN 219
           +VP L  NL+S   L+  G      +G + + KG+L++ K   ++ +YV +G       +
Sbjct: 58  YVPGLRKNLISIGTLDKQGYSFLGNDGHITVSKGALIVMKGKLQHGIYVMLGNSFQGTVS 117

Query: 220 SVNVVQE--DKTDLWHKRLGHMSAKGLEILQKNGYFGXXXXXXXXXXXKFPVSP------ 375
             + +++  D T LWH RLGHMS +GL +L K G  G              +        
Sbjct: 118 ISHSLEQHVDNTKLWHCRLGHMSERGLAVLSKQGLLGGAVTGKLEFCESCVMGKQRRLKF 177

Query: 376 FPNQSVCTDVLEYLHADVWGPSSEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSDVFEKFK 555
              +   T++L+Y H+D+WGPS   + G +RYF++ IDD+SRKVWV+ +K+K +VF  FK
Sbjct: 178 SHGKHTSTEILQYFHSDLWGPSPVQSHGRSRYFVTFIDDYSRKVWVYFLKSKDEVFGHFK 237

Query: 556 NWKTLIENQTGKRIRTLRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGV 717
            WKT++E +TGK ++TLRTDNGLEFCN LFD  C E GI RH TV +TPQQNGV
Sbjct: 238 EWKTMVEKRTGKLVKTLRTDNGLEFCNALFDGYCKEAGIVRHLTVRHTPQQNGV 291


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  204 bits (520), Expect = 6e-57
 Identities = 104/238 (43%), Positives = 143/238 (60%), Gaps = 6/238 (2%)
 Frame = +1

Query: 22   TLKNVRHVPDLCNNLMSCAALEDDGLEGRFGNGLMKILKGSLVIFKAVKRNNLYVCVGKP 201
            +L  VRH P L  NL+S   L+  G   +   G +++ KG+ ++ K V  N LYV  G  
Sbjct: 348  SLHEVRHAPRLKRNLISLGMLDSLGYFFKSRIGGLEVRKGTEIVMKGVNENGLYVLQGSS 407

Query: 202  VSFAQNSVNVVQEDKTDLWHKRLGHMSAKGLEILQKNGYFGXXXXXXXXXXX-----KFP 366
            V   +    V +ED+T LWH RLGHMS KGL+ L K G  G                K  
Sbjct: 408  VPVQEGVSAVSEEDRTKLWHLRLGHMSIKGLQELSKQGLLGGDRIQQLEFCENCIFGKSH 467

Query: 367  VSPF-PNQSVCTDVLEYLHADVWGPSSEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSDVF 543
             S F   + +   VL+Y H D WGP+  P+  G RYF+S+IDD+SRKVW++++K K    
Sbjct: 468  RSKFNKGEHMSKQVLDYAHIDHWGPAQVPSLSGGRYFMSLIDDYSRKVWIYILKIKDQAL 527

Query: 544  EKFKNWKTLIENQTGKRIRTLRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGV 717
            EKFK WK+L+ENQ+  +++ LRTDNGLEFC+ +F+  C + GI+RHKTV +TPQQNG+
Sbjct: 528  EKFKVWKSLVENQSDFKLKCLRTDNGLEFCSKVFEEYCQKHGIKRHKTVRFTPQQNGL 585


>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
          Length = 1208

 Score =  204 bits (519), Expect = 8e-57
 Identities = 102/246 (41%), Positives = 151/246 (61%), Gaps = 10/246 (4%)
 Frame = +1

Query: 10   GYAYTLKNVRHVPDLCNNLMSCAALEDDGLEGRFGNGLMKILKGSLVIFKAVKRNNLYVC 189
            G    L++VR++P+L  NL+S   L+  G   +     +++ +GSL + K   +N LY  
Sbjct: 312  GIERVLEDVRYIPELKRNLISLGMLDKSGYTFKSEPNSLRVARGSLTVMKGTIKNGLYTL 371

Query: 190  VGKPVSFAQNSVNVVQEDKTDLWHKRLGHMSAKGLEILQKNGYFGXXXXXXXXXXX---- 357
            +G+ V+   ++V       T LWH+RLGH+S +GL+ L+K G  G               
Sbjct: 372  IGQTVTGKVSTVLKEDVGTTKLWHQRLGHISHRGLQELEKQGVLGNYKLTDLPFCEHCVF 431

Query: 358  ------KFPVSPFPNQSVCTDVLEYLHADVWGPSSEPTQGGNRYFLSIIDDFSRKVWVFL 519
                  KF  +    Q+     L+Y+H+D+WGPS  P+ GG RYFL++IDD+SRKVW++ 
Sbjct: 432  GKATRVKFAKAIHETQNQ----LDYIHSDLWGPSRVPSIGGARYFLTLIDDYSRKVWIYF 487

Query: 520  MKNKSDVFEKFKNWKTLIENQTGKRIRTLRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYT 699
            +KNKS+ F KFK WK L+E QT ++++ LRTDNGLEF +N F++LC + GI RH+TV YT
Sbjct: 488  LKNKSETFLKFKEWKILVETQTSRKVKKLRTDNGLEFLSNDFNSLCQKEGIARHRTVRYT 547

Query: 700  PQQNGV 717
            PQQNG+
Sbjct: 548  PQQNGL 553


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  203 bits (516), Expect = 2e-56
 Identities = 110/249 (44%), Positives = 156/249 (62%), Gaps = 11/249 (4%)
 Frame = +1

Query: 4    DSGYAYTLKNVRHVPDLCNNLMSCAALEDDGLEGRFGNGLMKILKGSLVIFKA-VKRNNL 180
            D G   TLKNVR++P +  NL+S + L+ +G +    +G++K+ KGSLV  K  V    L
Sbjct: 340  DDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDVNSAKL 399

Query: 181  YVCVGKPVSFAQNSVNVVQED---KTDLWHKRLGHMSAKGL-EILQKNGYFGXXXXXXXX 348
            YV  G  ++ + ++   +  D   KT+LWH RLGHMS  G+ E++++N   G        
Sbjct: 400  YVLRGCTLTGSDSAAAAITNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKF 459

Query: 349  XXX----KFPVSPFPNQSVCTD--VLEYLHADVWGPSSEPTQGGNRYFLSIIDDFSRKVW 510
                   K     F N SV T    L+Y+HAD+WGPS +P+ GG RY L+IIDD+SRKVW
Sbjct: 460  CEHCIFGKHKRVQF-NTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVW 518

Query: 511  VFLMKNKSDVFEKFKNWKTLIENQTGKRIRTLRTDNGLEFCNNLFDNLCAEFGIRRHKTV 690
             + +K+K D F  FKNWK +IE QT ++++ LRTDNG EFC++ F++ C + GI RH T+
Sbjct: 519  PYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTI 578

Query: 691  PYTPQQNGV 717
            P+TPQQNGV
Sbjct: 579  PHTPQQNGV 587


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score =  203 bits (516), Expect = 2e-56
 Identities = 106/235 (45%), Positives = 145/235 (61%), Gaps = 6/235 (2%)
 Frame = +1

Query: 31   NVRHVPDLCNNLMSCAALEDDGLEGRFGNGLMKILKGSLVIFKAVKRNNLYVCVGKPVSF 210
            N  +VP L  NL+S   L+ +G       G++++ KG+LV+ K   ++ +Y  +G  V  
Sbjct: 676  NAWYVPGLRKNLISVGTLDKNGYTFSGSGGVLRVSKGALVVMKGRLQHGIYTLMGSSVL- 734

Query: 211  AQNSVNVVQEDKTDLWHKRLGHMSAKGLEILQKNGYF-----GXXXXXXXXXXXKFPVSP 375
               +  V +++ T+LWH+RLGHMS KGL IL K G       G           K     
Sbjct: 735  --GTAAVEEDNCTELWHRRLGHMSEKGLSILSKQGLLSGAETGKLKFCETCVMGKQRRVK 792

Query: 376  FPNQSVCTD-VLEYLHADVWGPSSEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSDVFEKF 552
            F   S  T+ VLEY+H+D+WGPS   +  G RY+++ IDDFSRKVWV+ +K K +VF KF
Sbjct: 793  FSMGSHTTNGVLEYIHSDLWGPSPVESHSGCRYYVTFIDDFSRKVWVYFLKAKDEVFGKF 852

Query: 553  KNWKTLIENQTGKRIRTLRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGV 717
            K WKT++E +TGK ++TLRTDNGLEFCN  FD  C + GI RH+TV +TPQQNGV
Sbjct: 853  KEWKTMVEKRTGKVVKTLRTDNGLEFCNKDFDEFCRKEGIVRHRTVRHTPQQNGV 907


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  202 bits (515), Expect = 3e-56
 Identities = 108/240 (45%), Positives = 144/240 (60%), Gaps = 8/240 (3%)
 Frame = +1

Query: 22   TLKNVRHVPDLCNNLMSCAALEDDGLEGRFGNGLMKILKGSLVIFKAVKRNNLYVCVGKP 201
            TL  VRHVP +  NL+S + L+  G      +G++++ KGS +I K V R  LY   G  
Sbjct: 334  TLNEVRHVPLMTKNLISLSLLDSKGFSWSGKDGVLRVWKGSNLILKGVMRGTLYFLQGST 393

Query: 202  VSFAQN--SVNVVQEDKTDLWHKRLGHMSAKGLEILQKNGYFGXXXXXXXXXXX-----K 360
            V+ + +  S    Q+D T LWH RLGHM  +G++IL K                     K
Sbjct: 394  VTGSAHVASSEFHQKDMTKLWHIRLGHMGERGMQILSKEDLLAGHKVKSLEFCEHCVFGK 453

Query: 361  FPVSPFPNQSVCTD-VLEYLHADVWGPSSEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSD 537
               + FP     T   L+Y+H+D WGP    + GG R+F+SIIDD+SR  WV++MK+KS+
Sbjct: 454  LHRNKFPKAIHRTKGTLDYIHSDCWGPCRVESLGGCRFFVSIIDDYSRMTWVYMMKHKSE 513

Query: 538  VFEKFKNWKTLIENQTGKRIRTLRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQNGV 717
             F+KFK WK L+ENQTGK+I+ LRTDNGLEFC + FD  C + GI RH+TV  TPQQNGV
Sbjct: 514  AFQKFKEWKILMENQTGKKIKRLRTDNGLEFCWSEFDQFCKDEGIARHRTVRNTPQQNGV 573


>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1335

 Score =  202 bits (515), Expect = 3e-56
 Identities = 104/243 (42%), Positives = 146/243 (60%), Gaps = 7/243 (2%)
 Frame = +1

Query: 10   GYAYTLKNVRHVPDLCNNLMSCAALEDDGLEGRFGNGLMKILKGSLVIFKAVKRNNLYVC 189
            G    L +VR++P++  NL+S   LED G   +  +G++KI+KG   I K  KR+ LY+ 
Sbjct: 336  GSQVILTDVRYMPNMTRNLISLGTLEDRGCWFKSQDGILKIVKGCSTILKGQKRDTLYIL 395

Query: 190  VGKPVSFAQNSVNVVQEDKTDLWHKRLGHMSAKGLEILQKNGYFGXXXXXXXXXXX---- 357
             G       +S   V+ D+T LWH RLGHMS KG+EIL K G                  
Sbjct: 396  DGVTEEGESHSSAEVK-DETALWHSRLGHMSQKGMEILVKKGCLRREVIKELEFCEDCVY 454

Query: 358  --KFPVSPFPNQSVCTDVLEYLHADVWGPSSEPTQGGN-RYFLSIIDDFSRKVWVFLMKN 528
              +  VS  P Q V  + L Y+H+D+WG    P   GN +YF+S +DD+SRKVW++ ++ 
Sbjct: 455  GKQHRVSFAPAQHVTKEKLAYVHSDLWGSPHNPASLGNSQYFISFVDDYSRKVWIYFLRK 514

Query: 529  KSDVFEKFKNWKTLIENQTGKRIRTLRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTPQQ 708
            K + FEKF  WK ++ENQ+ ++++ LRTDNGLE+CN+ F+  C E GI RHKT  YTPQQ
Sbjct: 515  KDEAFEKFVEWKKMVENQSDRKVKKLRTDNGLEYCNHYFEKFCKEEGIVRHKTCAYTPQQ 574

Query: 709  NGV 717
            NG+
Sbjct: 575  NGI 577


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  202 bits (514), Expect = 4e-56
 Identities = 110/249 (44%), Positives = 156/249 (62%), Gaps = 11/249 (4%)
 Frame = +1

Query: 4    DSGYAYTLKNVRHVPDLCNNLMSCAALEDDGLEGRFGNGLMKILKGSLVIFKA-VKRNNL 180
            D G   TLKNVR++P +  NL+S + L+ +G +    +G++K+ KGSLV  K  +    L
Sbjct: 340  DDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKL 399

Query: 181  YVCVGKPVSFAQNSVNVVQED---KTDLWHKRLGHMSAKGL-EILQKNGYFGXXXXXXXX 348
            YV  G  ++ + ++   V  D   KT+LWH RLGHMS  G+ E++++N   G        
Sbjct: 400  YVLRGCTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKF 459

Query: 349  XXX----KFPVSPFPNQSVCTD--VLEYLHADVWGPSSEPTQGGNRYFLSIIDDFSRKVW 510
                   K     F N SV T    L+Y+HAD+WGPS +P+ GG RY L+IIDD+SRKVW
Sbjct: 460  CEHCIFGKHKRVQF-NTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVW 518

Query: 511  VFLMKNKSDVFEKFKNWKTLIENQTGKRIRTLRTDNGLEFCNNLFDNLCAEFGIRRHKTV 690
             + +K+K D F  FKNWK +IE QT ++++ LRTDNG EFC++ F++ C + GI RH T+
Sbjct: 519  PYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTI 578

Query: 691  PYTPQQNGV 717
            P+TPQQNGV
Sbjct: 579  PHTPQQNGV 587


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  202 bits (513), Expect = 5e-56
 Identities = 109/249 (43%), Positives = 156/249 (62%), Gaps = 11/249 (4%)
 Frame = +1

Query: 4    DSGYAYTLKNVRHVPDLCNNLMSCAALEDDGLEGRFGNGLMKILKGSLVIFKA-VKRNNL 180
            D G   TLKNVR++P +  NL+S + L+ +G +    +G++K+ KGSLV  K  +    L
Sbjct: 340  DDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKL 399

Query: 181  YVCVGKPVSFAQNSVNVVQED---KTDLWHKRLGHMSAKGL-EILQKNGYFGXXXXXXXX 348
            YV  G  ++ + ++   V  D   KT+LWH RLGHMS  G+ E++++N   G        
Sbjct: 400  YVLRGCTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKF 459

Query: 349  XXX----KFPVSPFPNQSVCTD--VLEYLHADVWGPSSEPTQGGNRYFLSIIDDFSRKVW 510
                   K     F N SV T    L+Y+HAD+WGPS +P+ GG RY L++IDD+SRKVW
Sbjct: 460  CEHCIFGKHKRVQF-NTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTVIDDYSRKVW 518

Query: 511  VFLMKNKSDVFEKFKNWKTLIENQTGKRIRTLRTDNGLEFCNNLFDNLCAEFGIRRHKTV 690
             + +K+K D F  FKNWK +IE QT ++++ LRTDNG EFC++ F++ C + GI RH T+
Sbjct: 519  PYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTI 578

Query: 691  PYTPQQNGV 717
            P+TPQQNGV
Sbjct: 579  PHTPQQNGV 587


>dbj|BAH90873.1| Os01g0116166 [Oryza sativa Japonica Group]
          Length = 778

 Score =  199 bits (507), Expect = 6e-56
 Identities = 103/245 (42%), Positives = 151/245 (61%), Gaps = 9/245 (3%)
 Frame = +1

Query: 10   GYAYTLKNVRHVPDLCNNLMSCAALEDDGLEGRFGNGLMKILKGSLVIFKA-VKRNNLYV 186
            G   TL +VRH+P+L  +L+S   L+  G +   G+G++K+ KGSLV+ KA +K  NLY 
Sbjct: 317  GCIRTLSDVRHIPNLKRSLISFCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYH 376

Query: 187  CVGKPV--SFAQNSVNVVQEDKTDLWHKRLGHMSAKGLEILQKNGYF-----GXXXXXXX 345
              G  +  + A  S ++   D T+LWH RLGHMS  GL  L K G       G       
Sbjct: 377  LRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLYGQSIGKLKFCEH 436

Query: 346  XXXXKFPVSPFPNQSVCTD-VLEYLHADVWGPSSEPTQGGNRYFLSIIDDFSRKVWVFLM 522
                K     F   +  T+ +L+Y+H+D+WGP+ + + GG RY ++I+DD+SRKVW + +
Sbjct: 437  CIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYIMTIVDDYSRKVWPYFL 496

Query: 523  KNKSDVFEKFKNWKTLIENQTGKRIRTLRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTP 702
            K+K   F+ FK WKT++E QT ++++ LRTDNG+EFC+ +F + C   GI RH T+P+TP
Sbjct: 497  KHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTIPHTP 556

Query: 703  QQNGV 717
            QQNGV
Sbjct: 557  QQNGV 561


>gb|KYP68607.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1291

 Score =  201 bits (510), Expect = 1e-55
 Identities = 103/245 (42%), Positives = 152/245 (62%), Gaps = 8/245 (3%)
 Frame = +1

Query: 7    SGYAYTLKNVRHVPDLCNNLMSCAALEDDGLEGRFGNGLMKILKGSLVIFKAVKRNNLYV 186
            SG  +TLKNVRH+P L  NL+S   L+D+G E  FG+G  K+ KG+L++ +  KR +LY+
Sbjct: 318  SGSHWTLKNVRHIPALKRNLISVGQLDDEGHETTFGDGAWKVKKGNLIVARGKKRGSLYM 377

Query: 187  CVGKPVSFAQNSVNVVQEDKTDLWHKRLGHMSAKGLEILQKNGYF--------GXXXXXX 342
               + +     + N      + LWH+RLGHMS KG++++   G          G      
Sbjct: 378  VADENMIAVTEAAN-----NSFLWHQRLGHMSEKGMKLMATKGKLSKLKHVDVGTCEHCI 432

Query: 343  XXXXXKFPVSPFPNQSVCTDVLEYLHADVWGPSSEPTQGGNRYFLSIIDDFSRKVWVFLM 522
                 K   S    +++ T+ LE +H DVWGP+   + GG+ Y+++ IDD +RKVWV+ +
Sbjct: 433  LGKQRKISFSR-QGKTLKTERLELVHTDVWGPAPVKSLGGSCYYVTFIDDATRKVWVYFL 491

Query: 523  KNKSDVFEKFKNWKTLIENQTGKRIRTLRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTP 702
            KNKSDVF  FK WKT +ENQTG ++++L++DNG E+ ++ F N C+E GIR  KT+P TP
Sbjct: 492  KNKSDVFSVFKRWKTEVENQTGLKLKSLKSDNGGEYNSHEFKNFCSEHGIRMIKTIPGTP 551

Query: 703  QQNGV 717
            +QNGV
Sbjct: 552  EQNGV 556


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1278

 Score =  200 bits (509), Expect = 2e-55
 Identities = 108/246 (43%), Positives = 148/246 (60%), Gaps = 10/246 (4%)
 Frame = +1

Query: 10   GYAYTLKNVRHVPDLCNNLMSCAALEDDGLEGRFGNGLMKILKGSLV-IFKAVKRNNLYV 186
            G   TLK+VRH+P +  NL+S + L+ +G +     G++K+ KGSLV +   +   NLYV
Sbjct: 344  GITRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYV 403

Query: 187  CVGKPVSFAQNSVNVVQED--KTDLWHKRLGHMSAKGLEILQKNGYF-----GXXXXXXX 345
              G  +  +  +  V +++  KT+LWH RLGHMS  G+  L K         G       
Sbjct: 404  LRGSTLHGSVTAAAVTKDEPNKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCER 463

Query: 346  XXXXKFPVSPFPNQSV--CTDVLEYLHADVWGPSSEPTQGGNRYFLSIIDDFSRKVWVFL 519
                K     F N SV     +L+Y+HAD+WGPS +P+ GG RY L+IIDD+SRKVW + 
Sbjct: 464  CVFGKHKRVKF-NTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKVWPYF 522

Query: 520  MKNKSDVFEKFKNWKTLIENQTGKRIRTLRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYT 699
            +K+K D F  FK WK +IE QT K ++ LRTDN  EFC++ FD+ C + GI RH T+PYT
Sbjct: 523  LKHKDDTFAAFKEWKVMIERQTEKEVKVLRTDNAGEFCSDAFDDYCRKEGIVRHHTIPYT 582

Query: 700  PQQNGV 717
            PQQNGV
Sbjct: 583  PQQNGV 588


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  200 bits (508), Expect = 2e-55
 Identities = 104/245 (42%), Positives = 150/245 (61%), Gaps = 9/245 (3%)
 Frame = +1

Query: 10   GYAYTLKNVRHVPDLCNNLMSCAALEDDGLEGRFGNGLMKILKGSLVIFKA-VKRNNLYV 186
            GY  TL +VRH+P+L  +L+S   L+  G +   G+G++K+ KGSLV+ KA +K  NLY 
Sbjct: 386  GYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYH 445

Query: 187  CVGKPV--SFAQNSVNVVQEDKTDLWHKRLGHMSAKGLEILQKNGYF-----GXXXXXXX 345
              G  +  + A  S ++   D T+LWH RLGHMS  GL  L K         G       
Sbjct: 446  LRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCEH 505

Query: 346  XXXXKFPVSPFPNQSVCTD-VLEYLHADVWGPSSEPTQGGNRYFLSIIDDFSRKVWVFLM 522
                K     F   +  T+ +L+Y+H+D+WGP+ + + GG RY ++I+DD+SRKVW + +
Sbjct: 506  CIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPACKTSFGGARYMMTIVDDYSRKVWPYFL 565

Query: 523  KNKSDVFEKFKNWKTLIENQTGKRIRTLRTDNGLEFCNNLFDNLCAEFGIRRHKTVPYTP 702
            K+K   F+ FK WKT++E QT K+++ LRTDNG+EFC+ +F + C   GI  H TVP+TP
Sbjct: 566  KHKYQAFDVFKEWKTMVERQTEKKVKILRTDNGMEFCSKIFKSYCKSEGIVHHYTVPHTP 625

Query: 703  QQNGV 717
            QQNGV
Sbjct: 626  QQNGV 630