BLASTX nr result
ID: Rehmannia27_contig00011322
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia27_contig00011322
(700 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotei... 317 e-102
gb|KYP46254.1| Retrovirus-related Pol polyprotein from transposo... 228 7e-68
gb|KYP50611.1| Retrovirus-related Pol polyprotein from transposo... 223 1e-67
gb|KYP59893.1| Retrovirus-related Pol polyprotein from transposo... 221 2e-65
gb|KYP48029.1| Retrovirus-related Pol polyprotein from transposo... 219 4e-64
gb|KYP71220.1| Retrovirus-related Pol polyprotein from transposo... 217 4e-63
gb|KYP58493.1| Retrovirus-related Pol polyprotein from transposo... 206 2e-62
gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposo... 217 1e-61
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 214 1e-60
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi... 213 4e-60
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 210 6e-59
gb|KYP64461.1| Retrovirus-related Pol polyprotein from transposo... 204 1e-58
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera] 206 1e-57
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa] 206 2e-57
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 204 9e-57
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 203 1e-56
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 203 2e-56
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 202 2e-56
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 202 2e-56
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 202 2e-56
>ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
1-94 [Erythranthe guttata]
Length = 598
Score = 317 bits (812), Expect = e-102
Identities = 154/232 (66%), Positives = 181/232 (78%)
Frame = -2
Query: 699 LKFDSGYAYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFKAVKRN 520
LKF SG TLKNVRHVP L +NLISCA LEDDG G +G+G M I+KGS +FKA++
Sbjct: 63 LKFVSGSVLTLKNVRHVPTLSHNLISCAVLEDDGFRGDWGDGCMNIMKGSRYLFKALRMG 122
Query: 519 NLYVCIGKPVSFAGNSVNIVQEDKTDLWHKRLGHMSSKGLEILHKAGCFGSDVLSCMPFC 340
N+YVC + + S+N+VQ D ++LWHK LGHMS+K L ILHK FG+D +S + C
Sbjct: 123 NMYVCSAE----SSASMNVVQNDLSELWHKGLGHMSNKWLSILHKNQYFGNDKVSSVTLC 178
Query: 339 DSCVLGKQHKVKFPVSPFPNQSVCTDILEYLHADVWGPSSEPTQGGNRYFLSIIDDFSRK 160
DSC+LGKQ V FP P PN S CT+ILEY+HADVWGP+S PT GGNRYFLSIIDD+SRK
Sbjct: 179 DSCILGKQTHVLFPEYPSPNLSRCTEILEYIHADVWGPTSVPTYGGNRYFLSIIDDYSRK 238
Query: 159 VWVFLMKNKSDVFEKFKNWKILIENQTGKRIKTLRTDNGLEFCNNLFDNLCA 4
V+VFL+K KSDVF+KFK WK LIENQTGKRIKTLRTDNG+EFCN FDNLCA
Sbjct: 239 VFVFLLKQKSDVFDKFKTWKTLIENQTGKRIKTLRTDNGIEFCNLEFDNLCA 290
>gb|KYP46254.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 609
Score = 228 bits (581), Expect = 7e-68
Identities = 111/234 (47%), Positives = 149/234 (63%), Gaps = 3/234 (1%)
Frame = -2
Query: 699 LKFDSGYAYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFKAVKRN 520
+K G TL VRHVPDL NLIS L G + G+M+I KGS V+ + +K+
Sbjct: 260 IKMHDGVIRTLTEVRHVPDLKKNLISVGVLHTKGFKCNVEGGVMEISKGSTVVIRGIKKG 319
Query: 519 NLYVCIGKPVSFAGNSVNIVQE---DKTDLWHKRLGHMSSKGLEILHKAGCFGSDVLSCM 349
NLY+ G + SV++ + D T LWH RLGHMS +G+ +L K G + +
Sbjct: 320 NLYMLQGS-TNLISESVSVADKHTPDLTHLWHMRLGHMSERGMMVLRKQKLLGDHTVKEL 378
Query: 348 PFCDSCVLGKQHKVKFPVSPFPNQSVCTDILEYLHADVWGPSSEPTQGGNRYFLSIIDDF 169
FC+ CV+GK H++KFP + +S L+Y+H+D WGPS P+ GG RYFLSIIDD+
Sbjct: 379 KFCEHCVVGKHHRIKFPKAQHTTKST----LDYVHSDCWGPSRVPSLGGGRYFLSIIDDY 434
Query: 168 SRKVWVFLMKNKSDVFEKFKNWKILIENQTGKRIKTLRTDNGLEFCNNLFDNLC 7
S W+F+MK+K+ F+ FK WKIL+ENQTGKRIK LRTDNGLEFC+ F++ C
Sbjct: 435 SGMTWIFIMKHKNQAFKYFKEWKILVENQTGKRIKRLRTDNGLEFCSAEFNDYC 488
>gb|KYP50611.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 448
Score = 223 bits (569), Expect = 1e-67
Identities = 109/234 (46%), Positives = 150/234 (64%), Gaps = 3/234 (1%)
Frame = -2
Query: 699 LKFDSGYAYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFKAVKRN 520
L+ G TL VRHVPDL NLIS L+ G + NG+M+I +GS V+ + K+
Sbjct: 99 LRMHDGVIRTLTEVRHVPDLKKNLISVGVLDSKGFKCNVKNGVMEIKRGSTVVMRGFKKG 158
Query: 519 NLYVCIGKPVSFAGNSVNIVQE---DKTDLWHKRLGHMSSKGLEILHKAGCFGSDVLSCM 349
NLY+ G S + SV++ ++ D T LWH RLGHMS +G+ IL + G+ + +
Sbjct: 159 NLYMLQGSTSSIS-ESVSVAEKNIPDLTYLWHMRLGHMSERGMMILSRQQLLGNHTVKEL 217
Query: 348 PFCDSCVLGKQHKVKFPVSPFPNQSVCTDILEYLHADVWGPSSEPTQGGNRYFLSIIDDF 169
FC+ CV GKQH++KFP + +S L+Y+H+D WGPS P+ GG RYFLSIIDD+
Sbjct: 218 RFCEHCVFGKQHRIKFPKAQHSTKST----LDYIHSDCWGPSQVPSLGGGRYFLSIIDDY 273
Query: 168 SRKVWVFLMKNKSDVFEKFKNWKILIENQTGKRIKTLRTDNGLEFCNNLFDNLC 7
SR W+F+ K+K+ F+ FK WKIL+E Q KR+K LRTDNGLEFC+ F++ C
Sbjct: 274 SRMTWIFITKHKNQAFKCFKEWKILMEKQISKRVKRLRTDNGLEFCSKEFNDFC 327
>gb|KYP59893.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 593
Score = 221 bits (564), Expect = 2e-65
Identities = 108/234 (46%), Positives = 148/234 (63%), Gaps = 3/234 (1%)
Frame = -2
Query: 699 LKFDSGYAYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFKAVKRN 520
+K G TL VRHVPDL NLIS L+ G + G+M+I KGS ++ + +K+
Sbjct: 312 IKMHDGVIRTLTEVRHVPDLKKNLISVGVLDTKGFKCNVEGGVMEINKGSTIVIRGIKKG 371
Query: 519 NLYVCIGKPVSFAGNSVNIVQE---DKTDLWHKRLGHMSSKGLEILHKAGCFGSDVLSCM 349
NLY+ G + S+++ + D T LWH RLGHMS +G+ +L K + +
Sbjct: 372 NLYMLQGS-TNLISESISVADKHTLDLTRLWHMRLGHMSERGMMVLSKQKLLRDHTVKEL 430
Query: 348 PFCDSCVLGKQHKVKFPVSPFPNQSVCTDILEYLHADVWGPSSEPTQGGNRYFLSIIDDF 169
FC+ CVLGK H+ KFP + +S L+Y+H++ WGPS P+ GG RYFLSIIDD+
Sbjct: 431 KFCEHCVLGKHHRSKFPKAQHTTKST----LDYVHSNCWGPSRVPSLGGGRYFLSIIDDY 486
Query: 168 SRKVWVFLMKNKSDVFEKFKNWKILIENQTGKRIKTLRTDNGLEFCNNLFDNLC 7
SR W+F+MK+K+ F+ FK WKIL+ENQTGKRIK LRTDN LEFC+ F++ C
Sbjct: 487 SRMTWIFIMKHKNQAFKYFKEWKILVENQTGKRIKRLRTDNSLEFCSAEFNDYC 540
>gb|KYP48029.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 634
Score = 219 bits (557), Expect = 4e-64
Identities = 107/227 (47%), Positives = 147/227 (64%), Gaps = 7/227 (3%)
Frame = -2
Query: 660 VRHVPDLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFKAVKRNNLYVC-IGKPVSF 484
VRHVP+L NLIS L+ G + G +++ KGSLVI K V++N LY +G+ V
Sbjct: 1 VRHVPELKRNLISLGTLDQGGYAYKCDQGSLRVFKGSLVILKGVRKNWLYYSLVGQTVVA 60
Query: 483 AGNSV------NIVQEDKTDLWHKRLGHMSSKGLEILHKAGCFGSDVLSCMPFCDSCVLG 322
++V I + T LWH RLGH+S +GL+ L K G FG D + + FC+ CV+G
Sbjct: 61 RSSNVIGSSNATITSDVATKLWHHRLGHVSQRGLDELAKQGVFGRDKIEPLEFCEHCVMG 120
Query: 321 KQHKVKFPVSPFPNQSVCTDILEYLHADVWGPSSEPTQGGNRYFLSIIDDFSRKVWVFLM 142
K ++KF S + V L+Y+H+D+WGPS + GG RYFLSI+DDFSRKVWV+ +
Sbjct: 121 KASRLKFSTSTHSSGGV----LDYVHSDLWGPSRTESHGGARYFLSIVDDFSRKVWVYFL 176
Query: 141 KNKSDVFEKFKNWKILIENQTGKRIKTLRTDNGLEFCNNLFDNLCAE 1
K K++VF++FK WK+L+E QTG+ +K LRTDNGLEFC+ F C E
Sbjct: 177 KQKNEVFDRFKEWKVLVETQTGRNLKKLRTDNGLEFCDEKFSKFCRE 223
>gb|KYP71220.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 690
Score = 217 bits (553), Expect = 4e-63
Identities = 106/233 (45%), Positives = 148/233 (63%), Gaps = 1/233 (0%)
Frame = -2
Query: 699 LKFDSGYAYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFKAVKRN 520
+K G TL NVR +PDL NLIS LE G + G++K+ KG++V+ KA +
Sbjct: 333 IKTHDGTIKTLSNVRFIPDLKRNLISLGTLESLGCKYSAEGGVLKVSKGAIVLLKANRIG 392
Query: 519 NLYVCIGKPVS-FAGNSVNIVQEDKTDLWHKRLGHMSSKGLEILHKAGCFGSDVLSCMPF 343
+LY+ G V+ A S ++ +D T LWH RLGHMS KG+ +L K G G+ + + F
Sbjct: 393 SLYILQGSIVTGSAAVSSSMSDKDATKLWHMRLGHMSEKGMHLLSKQGLLGNQGIGKLEF 452
Query: 342 CDSCVLGKQHKVKFPVSPFPNQSVCTDILEYLHADVWGPSSEPTQGGNRYFLSIIDDFSR 163
C+ CV GKQ +V F + + L+Y+H+D+WGPS P+ GG RY ++IIDDFSR
Sbjct: 453 CEHCVFGKQKRVSFSTATHRTKGT----LDYIHSDLWGPSKVPSYGGCRYMMTIIDDFSR 508
Query: 162 KVWVFLMKNKSDVFEKFKNWKILIENQTGKRIKTLRTDNGLEFCNNLFDNLCA 4
KVWV+ +++K++ F FK WK L+E QTGK++K LRTDNGLEFC F+ CA
Sbjct: 509 KVWVYFLRHKNETFPTFKKWKTLVETQTGKKVKKLRTDNGLEFCEGDFNEFCA 561
>gb|KYP58493.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 313
Score = 206 bits (524), Expect = 2e-62
Identities = 103/222 (46%), Positives = 142/222 (63%), Gaps = 4/222 (1%)
Frame = -2
Query: 654 HVPDLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFKAVKRNNLYVCIGKPVSFAGN 475
+VP L NLIS L+ G +G + + KG+L++ K ++ +YV +G SF G
Sbjct: 58 YVPGLRKNLISIGTLDKQGYSFLGNDGHITVSKGALIVMKGKLQHGIYVMLGN--SFQGT 115
Query: 474 ---SVNIVQE-DKTDLWHKRLGHMSSKGLEILHKAGCFGSDVLSCMPFCDSCVLGKQHKV 307
S ++ Q D T LWH RLGHMS +GL +L K G G V + FC+SCV+GKQ ++
Sbjct: 116 VSISHSLEQHVDNTKLWHCRLGHMSERGLAVLSKQGLLGGAVTGKLEFCESCVMGKQRRL 175
Query: 306 KFPVSPFPNQSVCTDILEYLHADVWGPSSEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSD 127
KF + T+IL+Y H+D+WGPS + G +RYF++ IDD+SRKVWV+ +K+K +
Sbjct: 176 KFS----HGKHTSTEILQYFHSDLWGPSPVQSHGRSRYFVTFIDDYSRKVWVYFLKSKDE 231
Query: 126 VFEKFKNWKILIENQTGKRIKTLRTDNGLEFCNNLFDNLCAE 1
VF FK WK ++E +TGK +KTLRTDNGLEFCN LFD C E
Sbjct: 232 VFGHFKEWKTMVEKRTGKLVKTLRTDNGLEFCNALFDGYCKE 273
>gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 1032
Score = 217 bits (553), Expect = 1e-61
Identities = 106/233 (45%), Positives = 148/233 (63%), Gaps = 1/233 (0%)
Frame = -2
Query: 699 LKFDSGYAYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFKAVKRN 520
+K G TL NVR +PDL NLIS LE G + G++K+ KG++V+ KA +
Sbjct: 37 IKTHDGTIKTLSNVRFIPDLKRNLISLGTLESLGCKYSAEGGVLKVSKGAIVLLKANRIG 96
Query: 519 NLYVCIGKPVS-FAGNSVNIVQEDKTDLWHKRLGHMSSKGLEILHKAGCFGSDVLSCMPF 343
+LY+ G V+ A S ++ +D T LWH RLGHMS KG+ +L K G G+ + + F
Sbjct: 97 SLYILQGSIVTGSAAVSSSMSDKDATKLWHMRLGHMSEKGMHLLSKQGLLGNQGIGKLEF 156
Query: 342 CDSCVLGKQHKVKFPVSPFPNQSVCTDILEYLHADVWGPSSEPTQGGNRYFLSIIDDFSR 163
C+ CV GKQ +V F + + L+Y+H+D+WGPS P+ GG RY ++IIDDFSR
Sbjct: 157 CEHCVFGKQKRVSFSTATHRTKGT----LDYIHSDLWGPSKVPSYGGCRYMMTIIDDFSR 212
Query: 162 KVWVFLMKNKSDVFEKFKNWKILIENQTGKRIKTLRTDNGLEFCNNLFDNLCA 4
KVWV+ +++K++ F FK WK L+E QTGK++K LRTDNGLEFC F+ CA
Sbjct: 213 KVWVYFLRHKNETFPTFKKWKTLVETQTGKKVKKLRTDNGLEFCEGDFNEFCA 265
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 214 bits (546), Expect = 1e-60
Identities = 105/233 (45%), Positives = 154/233 (66%), Gaps = 2/233 (0%)
Frame = -2
Query: 699 LKFDSGYAYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFKAVKRN 520
+K G L++VR++P+L NLIS L+ G + +++ +GSL + K +N
Sbjct: 307 IKHYDGIERVLEDVRYIPELKRNLISLGMLDKSGYTFKSEPNSLRVARGSLTVMKGTIKN 366
Query: 519 NLYVCIGKPVSFAGNSVNIVQED--KTDLWHKRLGHMSSKGLEILHKAGCFGSDVLSCMP 346
LY IG+ V+ G +++ED T LWH+RLGH+S +GL+ L K G G+ L+ +P
Sbjct: 367 GLYTLIGQTVT--GKVSTVLKEDVGTTKLWHQRLGHISHRGLQELEKQGVLGNYKLTDLP 424
Query: 345 FCDSCVLGKQHKVKFPVSPFPNQSVCTDILEYLHADVWGPSSEPTQGGNRYFLSIIDDFS 166
FC+ CV GK +VKF + Q+ L+Y+H+D+WGPS P+ GG RYFL++IDD+S
Sbjct: 425 FCEHCVFGKATRVKFAKAIHETQNQ----LDYIHSDLWGPSRVPSIGGARYFLTLIDDYS 480
Query: 165 RKVWVFLMKNKSDVFEKFKNWKILIENQTGKRIKTLRTDNGLEFCNNLFDNLC 7
RKVW++ +KNKS+ F KFK WKIL+E QT +++K LRTDNGLEF +N F++LC
Sbjct: 481 RKVWIYFLKNKSETFLKFKEWKILVETQTSRKVKKLRTDNGLEFLSNDFNSLC 533
>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1335
Score = 213 bits (543), Expect = 4e-60
Identities = 104/235 (44%), Positives = 151/235 (64%), Gaps = 2/235 (0%)
Frame = -2
Query: 699 LKFDSGYAYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFKAVKRN 520
++ G L +VR++P++ NLIS LED G + +G++KI+KG I K KR+
Sbjct: 331 IRNSDGSQVILTDVRYMPNMTRNLISLGTLEDRGCWFKSQDGILKIVKGCSTILKGQKRD 390
Query: 519 NLYVCIGKPVSFAGNSVNIVQ-EDKTDLWHKRLGHMSSKGLEILHKAGCFGSDVLSCMPF 343
LY+ G V+ G S + + +D+T LWH RLGHMS KG+EIL K GC +V+ + F
Sbjct: 391 TLYILDG--VTEEGESHSSAEVKDETALWHSRLGHMSQKGMEILVKKGCLRREVIKELEF 448
Query: 342 CDSCVLGKQHKVKFPVSPFPNQSVCTDILEYLHADVWGPSSEPTQGGN-RYFLSIIDDFS 166
C+ CV GKQH+V F P Q V + L Y+H+D+WG P GN +YF+S +DD+S
Sbjct: 449 CEDCVYGKQHRVSFA----PAQHVTKEKLAYVHSDLWGSPHNPASLGNSQYFISFVDDYS 504
Query: 165 RKVWVFLMKNKSDVFEKFKNWKILIENQTGKRIKTLRTDNGLEFCNNLFDNLCAE 1
RKVW++ ++ K + FEKF WK ++ENQ+ +++K LRTDNGLE+CN+ F+ C E
Sbjct: 505 RKVWIYFLRKKDEAFEKFVEWKKMVENQSDRKVKKLRTDNGLEYCNHYFEKFCKE 559
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 210 bits (534), Expect = 6e-59
Identities = 105/235 (44%), Positives = 145/235 (61%), Gaps = 2/235 (0%)
Frame = -2
Query: 699 LKFDSGYAYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFKAVKRN 520
++ G TL VRHVP + NLIS + L+ G +G++++ KGS +I K V R
Sbjct: 325 IRTHDGSFCTLNEVRHVPLMTKNLISLSLLDSKGFSWSGKDGVLRVWKGSNLILKGVMRG 384
Query: 519 NLYVCIGKPVSFAGN--SVNIVQEDKTDLWHKRLGHMSSKGLEILHKAGCFGSDVLSCMP 346
LY G V+ + + S Q+D T LWH RLGHM +G++IL K + +
Sbjct: 385 TLYFLQGSTVTGSAHVASSEFHQKDMTKLWHIRLGHMGERGMQILSKEDLLAGHKVKSLE 444
Query: 345 FCDSCVLGKQHKVKFPVSPFPNQSVCTDILEYLHADVWGPSSEPTQGGNRYFLSIIDDFS 166
FC+ CV GK H+ KFP + + L+Y+H+D WGP + GG R+F+SIIDD+S
Sbjct: 445 FCEHCVFGKLHRNKFPKAIHRTKGT----LDYIHSDCWGPCRVESLGGCRFFVSIIDDYS 500
Query: 165 RKVWVFLMKNKSDVFEKFKNWKILIENQTGKRIKTLRTDNGLEFCNNLFDNLCAE 1
R WV++MK+KS+ F+KFK WKIL+ENQTGK+IK LRTDNGLEFC + FD C +
Sbjct: 501 RMTWVYMMKHKSEAFQKFKEWKILMENQTGKKIKRLRTDNGLEFCWSEFDQFCKD 555
>gb|KYP64461.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 597
Score = 204 bits (518), Expect = 1e-58
Identities = 102/222 (45%), Positives = 144/222 (64%), Gaps = 4/222 (1%)
Frame = -2
Query: 654 HVPDLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFKAVKRNNLYVCIGKPVSFAGN 475
+VP L NLIS L+ G +G + + KG+LV+ K ++ +YV + SF G
Sbjct: 263 YVPGLRKNLISIGTLDKQGYSFSGNDGQITVSKGALVVMKGKLQHGIYVMLDN--SFQGM 320
Query: 474 ---SVNIVQE-DKTDLWHKRLGHMSSKGLEILHKAGCFGSDVLSCMPFCDSCVLGKQHKV 307
S ++ Q D T LWH +LGHMS +GL +L K G G V + FC+SCV+GKQ ++
Sbjct: 321 VSISHSLEQHVDNTKLWHCKLGHMSERGLVVLSKQGLLGGAVTGKLKFCESCVMGKQRRL 380
Query: 306 KFPVSPFPNQSVCTDILEYLHADVWGPSSEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSD 127
KF + + T IL+Y+H+D+WGPS + G +RYF++ IDD+SRKVWV+ +K+K +
Sbjct: 381 KFSHGKYTS----TKILQYVHSDLWGPSPVQSHGRSRYFVTFIDDYSRKVWVYFLKSKDE 436
Query: 126 VFEKFKNWKILIENQTGKRIKTLRTDNGLEFCNNLFDNLCAE 1
VF +FK WK ++E +TGK +KTLRTDNGLEFCN LFD+ C E
Sbjct: 437 VFGRFKEWKTMVEKRTGKLVKTLRTDNGLEFCNALFDDYCKE 478
>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
Length = 1643
Score = 206 bits (525), Expect = 1e-57
Identities = 102/231 (44%), Positives = 143/231 (61%)
Frame = -2
Query: 699 LKFDSGYAYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFKAVKRN 520
+K G TL N +VP L NLIS L+ +G G++++ KG+LV+ K ++
Sbjct: 665 IKMYDGLVRTL-NAWYVPGLRKNLISVGTLDKNGYTFSGSGGVLRVSKGALVVMKGRLQH 723
Query: 519 NLYVCIGKPVSFAGNSVNIVQEDKTDLWHKRLGHMSSKGLEILHKAGCFGSDVLSCMPFC 340
+Y +G V + + +++ T+LWH+RLGHMS KGL IL K G + FC
Sbjct: 724 GIYTLMGSSVL---GTAAVEEDNCTELWHRRLGHMSEKGLSILSKQGLLSGAETGKLKFC 780
Query: 339 DSCVLGKQHKVKFPVSPFPNQSVCTDILEYLHADVWGPSSEPTQGGNRYFLSIIDDFSRK 160
++CV+GKQ +VKF + V LEY+H+D+WGPS + G RY+++ IDDFSRK
Sbjct: 781 ETCVMGKQRRVKFSMGSHTTNGV----LEYIHSDLWGPSPVESHSGCRYYVTFIDDFSRK 836
Query: 159 VWVFLMKNKSDVFEKFKNWKILIENQTGKRIKTLRTDNGLEFCNNLFDNLC 7
VWV+ +K K +VF KFK WK ++E +TGK +KTLRTDNGLEFCN FD C
Sbjct: 837 VWVYFLKAKDEVFGKFKEWKTMVEKRTGKVVKTLRTDNGLEFCNKDFDEFC 887
>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
Length = 1297
Score = 206 bits (523), Expect = 2e-57
Identities = 105/234 (44%), Positives = 148/234 (63%), Gaps = 1/234 (0%)
Frame = -2
Query: 699 LKFDSGYAYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFK-AVKR 523
++ G L NVRH P L NLIS + ++ G + NG++K+ KG +V K A++
Sbjct: 309 IRMHDGIVRALGNVRHTPGLNRNLISLSTMDRVGFWHKGQNGVLKVGKGQMVYMKGAIQP 368
Query: 522 NNLYVCIGKPVSFAGNSVNIVQEDKTDLWHKRLGHMSSKGLEILHKAGCFGSDVLSCMPF 343
+N+Y G V G + +EDKT+LW +RLGHMS +GL+ LHK + + + F
Sbjct: 369 DNMYKLTGSTVE--GGAGVCTEEDKTELWRRRLGHMSQRGLQELHKKEQLDGVMSAALEF 426
Query: 342 CDSCVLGKQHKVKFPVSPFPNQSVCTDILEYLHADVWGPSSEPTQGGNRYFLSIIDDFSR 163
C C LGKQ +V F +S N+S +L+Y+H DVWGPS+ ++GG RYF+S IDDFSR
Sbjct: 427 CRYCTLGKQTRVSFNLSSSENKS--KGVLDYIHTDVWGPSATISKGGARYFVSFIDDFSR 484
Query: 162 KVWVFLMKNKSDVFEKFKNWKILIENQTGKRIKTLRTDNGLEFCNNLFDNLCAE 1
KVW+F MK K++VF KFK WK + NQTG++IK LR+DNG E+ + F LC +
Sbjct: 485 KVWIFFMKTKNEVFTKFKEWKAEVGNQTGRKIKCLRSDNGGEYRDKKFLQLCKD 538
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 204 bits (518), Expect = 9e-57
Identities = 102/237 (43%), Positives = 148/237 (62%), Gaps = 4/237 (1%)
Frame = -2
Query: 699 LKFDSGYAYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFKA-VKR 523
+K D G TLKNVR++P + NLIS + L+ +G + +G++K+ KGSLV K V
Sbjct: 337 IKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDVNS 396
Query: 522 NNLYVCIGKPVSFAGNSVNIVQED---KTDLWHKRLGHMSSKGLEILHKAGCFGSDVLSC 352
LYV G ++ + ++ + D KT+LWH RLGHMS G+ L K S
Sbjct: 397 AKLYVLRGCTLTGSDSAAAAITNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSK 456
Query: 351 MPFCDSCVLGKQHKVKFPVSPFPNQSVCTDILEYLHADVWGPSSEPTQGGNRYFLSIIDD 172
+ FC+ C+ GK +V+F S + L+Y+HAD+WGPS +P+ GG RY L+IIDD
Sbjct: 457 IKFCEHCIFGKHKRVQFNTSVHTTKGT----LDYVHADLWGPSKKPSLGGARYMLTIIDD 512
Query: 171 FSRKVWVFLMKNKSDVFEKFKNWKILIENQTGKRIKTLRTDNGLEFCNNLFDNLCAE 1
+SRKVW + +K+K D F FKNWK++IE QT +++K LRTDNG EFC++ F++ C +
Sbjct: 513 YSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQ 569
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 203 bits (517), Expect = 1e-56
Identities = 97/222 (43%), Positives = 136/222 (61%)
Frame = -2
Query: 672 TLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFKAVKRNNLYVCIGKP 493
+L VRH P L NLIS L+ G + G +++ KG+ ++ K V N LYV G
Sbjct: 348 SLHEVRHAPRLKRNLISLGMLDSLGYFFKSRIGGLEVRKGTEIVMKGVNENGLYVLQGSS 407
Query: 492 VSFAGNSVNIVQEDKTDLWHKRLGHMSSKGLEILHKAGCFGSDVLSCMPFCDSCVLGKQH 313
V + +ED+T LWH RLGHMS KGL+ L K G G D + + FC++C+ GK H
Sbjct: 408 VPVQEGVSAVSEEDRTKLWHLRLGHMSIKGLQELSKQGLLGGDRIQQLEFCENCIFGKSH 467
Query: 312 KVKFPVSPFPNQSVCTDILEYLHADVWGPSSEPTQGGNRYFLSIIDDFSRKVWVFLMKNK 133
+ KF + + +L+Y H D WGP+ P+ G RYF+S+IDD+SRKVW++++K K
Sbjct: 468 RSKFN----KGEHMSKQVLDYAHIDHWGPAQVPSLSGGRYFMSLIDDYSRKVWIYILKIK 523
Query: 132 SDVFEKFKNWKILIENQTGKRIKTLRTDNGLEFCNNLFDNLC 7
EKFK WK L+ENQ+ ++K LRTDNGLEFC+ +F+ C
Sbjct: 524 DQALEKFKVWKSLVENQSDFKLKCLRTDNGLEFCSKVFEEYC 565
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 203 bits (516), Expect = 2e-56
Identities = 102/237 (43%), Positives = 148/237 (62%), Gaps = 4/237 (1%)
Frame = -2
Query: 699 LKFDSGYAYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFKA-VKR 523
+K D G TLKNVR++P + NLIS + L+ +G + +G++K+ KGSLV K +
Sbjct: 337 IKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNS 396
Query: 522 NNLYVCIGKPVSFAGNSVNIVQED---KTDLWHKRLGHMSSKGLEILHKAGCFGSDVLSC 352
LYV G ++ + ++ V D KT+LWH RLGHMS G+ L K S
Sbjct: 397 AKLYVLRGCTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSK 456
Query: 351 MPFCDSCVLGKQHKVKFPVSPFPNQSVCTDILEYLHADVWGPSSEPTQGGNRYFLSIIDD 172
+ FC+ C+ GK +V+F S + L+Y+HAD+WGPS +P+ GG RY L+IIDD
Sbjct: 457 IKFCEHCIFGKHKRVQFNTSVHTTKGT----LDYVHADLWGPSKKPSLGGARYMLTIIDD 512
Query: 171 FSRKVWVFLMKNKSDVFEKFKNWKILIENQTGKRIKTLRTDNGLEFCNNLFDNLCAE 1
+SRKVW + +K+K D F FKNWK++IE QT +++K LRTDNG EFC++ F++ C +
Sbjct: 513 YSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQ 569
>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 202 bits (515), Expect = 2e-56
Identities = 99/234 (42%), Positives = 146/234 (62%), Gaps = 3/234 (1%)
Frame = -2
Query: 699 LKFDSGYAYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFKA-VKR 523
+K GY TL +VRH+P+L +LIS L+ G + G+G++K+ KGSLV+ KA +K
Sbjct: 381 IKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKS 440
Query: 522 NNLYVCIGKPV--SFAGNSVNIVQEDKTDLWHKRLGHMSSKGLEILHKAGCFGSDVLSCM 349
NLY G + + A S ++ D T+LWH RLGHMS GL L K + +
Sbjct: 441 ANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKL 500
Query: 348 PFCDSCVLGKQHKVKFPVSPFPNQSVCTDILEYLHADVWGPSSEPTQGGNRYFLSIIDDF 169
FC+ C+ GK +VKF S + IL+Y+H+D+WGP+ + + GG RY ++I+DD+
Sbjct: 501 KFCEHCIFGKHKRVKFNTSTHTTEG----ILDYVHSDLWGPACKTSFGGARYMMTIVDDY 556
Query: 168 SRKVWVFLMKNKSDVFEKFKNWKILIENQTGKRIKTLRTDNGLEFCNNLFDNLC 7
SRKVW + +K+K F+ FK WK ++E QT K++K LRTDNG+EFC+ +F + C
Sbjct: 557 SRKVWPYFLKHKYQAFDVFKEWKTMVERQTEKKVKILRTDNGMEFCSKIFKSYC 610
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 202 bits (515), Expect = 2e-56
Identities = 99/234 (42%), Positives = 146/234 (62%), Gaps = 3/234 (1%)
Frame = -2
Query: 699 LKFDSGYAYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFKA-VKR 523
+K GY TL +VRH+P+L +LIS L+ G + G+G++K+ KGSLV+ KA +K
Sbjct: 381 IKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKS 440
Query: 522 NNLYVCIGKPV--SFAGNSVNIVQEDKTDLWHKRLGHMSSKGLEILHKAGCFGSDVLSCM 349
NLY G + + A S ++ D T+LWH RLGHMS GL L K + +
Sbjct: 441 ANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKL 500
Query: 348 PFCDSCVLGKQHKVKFPVSPFPNQSVCTDILEYLHADVWGPSSEPTQGGNRYFLSIIDDF 169
FC+ C+ GK +VKF S + IL+Y+H+D+WGP+ + + GG RY ++I+DD+
Sbjct: 501 KFCEHCIFGKHKRVKFNTSTHTTEG----ILDYVHSDLWGPACKTSFGGARYMMTIVDDY 556
Query: 168 SRKVWVFLMKNKSDVFEKFKNWKILIENQTGKRIKTLRTDNGLEFCNNLFDNLC 7
SRKVW + +K+K F+ FK WK ++E QT K++K LRTDNG+EFC+ +F + C
Sbjct: 557 SRKVWPYFLKHKYQAFDVFKEWKTMVERQTEKKVKILRTDNGMEFCSKIFKSYC 610
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 202 bits (515), Expect = 2e-56
Identities = 101/237 (42%), Positives = 148/237 (62%), Gaps = 4/237 (1%)
Frame = -2
Query: 699 LKFDSGYAYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGLMKILKGSLVIFKA-VKR 523
+K D G TLKNVR++P + NLIS + L+ +G + +G++K+ KGSLV K +
Sbjct: 337 IKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNS 396
Query: 522 NNLYVCIGKPVSFAGNSVNIVQED---KTDLWHKRLGHMSSKGLEILHKAGCFGSDVLSC 352
LYV G ++ + ++ V D KT+LWH RLGHMS G+ L K S
Sbjct: 397 AKLYVLRGCTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSK 456
Query: 351 MPFCDSCVLGKQHKVKFPVSPFPNQSVCTDILEYLHADVWGPSSEPTQGGNRYFLSIIDD 172
+ FC+ C+ GK +V+F S + L+Y+HAD+WGPS +P+ GG RY L++IDD
Sbjct: 457 IKFCEHCIFGKHKRVQFNTSVHTTKGT----LDYVHADLWGPSKKPSLGGARYMLTVIDD 512
Query: 171 FSRKVWVFLMKNKSDVFEKFKNWKILIENQTGKRIKTLRTDNGLEFCNNLFDNLCAE 1
+SRKVW + +K+K D F FKNWK++IE QT +++K LRTDNG EFC++ F++ C +
Sbjct: 513 YSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQ 569