BLASTX nr result
ID: Rehmannia27_contig00008801
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia27_contig00008801
(5353 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AMN10083.1| RNA-dependent RNA polymerase [Plantago asiatica m... 2015 0.0
gb|AAX19931.1| viral replicase [Nandina mosaic virus] 2011 0.0
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ... 1992 0.0
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ... 1989 0.0
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ... 1989 0.0
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ... 1988 0.0
emb|CEN56830.1| RNA-dependent RNA polymerase [Plantago asiatica ... 1987 0.0
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ... 1986 0.0
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ... 1983 0.0
gb|AMD78101.1| RdRP [Plantago asiatica mosaic virus] 1979 0.0
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ... 1979 0.0
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1... 1932 0.0
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi... 1652 0.0
gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago a... 1276 0.0
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo... 1043 0.0
dbj|BAU45634.1| RNA-dependent RNA polymerase [Hydrangea ringspot... 1033 0.0
dbj|BAU45640.1| RNA-dependent RNA polymerase [Hydrangea ringspot... 1033 0.0
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus] 1031 0.0
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5... 1028 0.0
ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|A... 920 0.0
>gb|AMN10083.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1387
Score = 2015 bits (5220), Expect = 0.0
Identities = 1001/1196 (83%), Positives = 1048/1196 (87%), Gaps = 7/1196 (0%)
Frame = -1
Query: 5353 LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGA 5174
LYPQIYTLTYSEDGFMYIPGGHAGASYFH+YDQLEWLTVGHLTAP QPTITAQRLETKGA
Sbjct: 189 LYPQIYTLTYSEDGFMYIPGGHAGASYFHRYDQLEWLTVGHLTAPGQPTITAQRLETKGA 248
Query: 5173 NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKE 4994
NHLFIFQRGNYLTP RRTF T++HYVTVP IFLPE YNCRTPISKT MMQMFFYIKSVKE
Sbjct: 249 NHLFIFQRGNYLTPARRTFATSDHYVTVPQIFLPEDYNCRTPISKTTMMQMFFYIKSVKE 308
Query: 4993 AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLR 4814
AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCF+DVLSGNL+QRLLR
Sbjct: 309 AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFQDVLSGNLLQRLLR 368
Query: 4813 PLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPV 4634
PLR+D QRVLQFF+GRPSFVKLIKALDWQPITLEFPVR V T +RGPPGF NPFT+P PV
Sbjct: 369 PLRADFQRVLQFFQGRPSFVKLIKALDWQPITLEFPVRDVRTTVRGPPGFKNPFTQPQPV 428
Query: 4633 NPDDADTMRAFREFXXXXXXXXXXTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHE 4454
NP+DADT R F++F T+ +LE +AE+ HT LKV L +QL A+H
Sbjct: 429 NPEDADTSRGFQDFTRATTPKLQPTVEATLEATAESSDHHTQLKVLCDTLPEKQLEAIHA 488
Query: 4453 LGNTRLGGPLLPKITXXXXXXXXXXXXXXXXXPTQASASLNQGDHTDEAPVNSDPATLPW 4274
LG+ R GGPLLP T + AS + + D P P TLPW
Sbjct: 489 LGHLRCGGPLLPAPTQSCSPAEPCPDLPPSPVKSTASPASPDPNVLDAQPTTQAPETLPW 548
Query: 4273 VAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGL 4094
VAWLPKLNALGFEALE+Q DPSTGE+IMPI D RDLP+ATLP HW L +LTTLR L
Sbjct: 549 VAWLPKLNALGFEALEVQHDPSTGEMIMPITDTRDLPRATLPPHWQGHDLESILTTLRSL 608
Query: 4093 NRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGA 3914
NRFPTPW PDR RARAFTSDVKNSRTGKALHRE+Q WKETQTMLTEN A+LAISVIHGA
Sbjct: 609 NRFPTPWSPDRTRARAFTSDVKNSRTGKALHRESQAWKETQTMLTENTQADLAISVIHGA 668
Query: 3913 GGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPV 3734
GGSGKSQALQTLLRQNP LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV S SPV
Sbjct: 669 GGSGKSQALQTLLRQNPSLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVSSHSPV 728
Query: 3733 VIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSEL 3554
VIFDDYGKLPQGY+EAFA+THA+LEL ILTGDPRQSTHHE+NEEALISKL PATTI+S L
Sbjct: 729 VIFDDYGKLPQGYLEAFALTHANLELAILTGDPRQSTHHESNEEALISKLPPATTIYSTL 788
Query: 3553 SRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHK 3374
SRYYINATHRNSK+LANKLGVYS+NSCPL VTYGFQP PGMHLLVPSL+KKAAFTD GHK
Sbjct: 789 SRYYINATHRNSKYLANKLGVYSANSCPLNVTYGFQPLPGMHLLVPSLVKKAAFTDVGHK 848
Query: 3373 VSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEA 3194
VSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEA
Sbjct: 849 VSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEA 908
Query: 3193 TPYLKTFLSLVREDKIEEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLXXXXXXXX 3014
TPYLKTFLSLVREDKI EF PVE+ TTLDDFKE L
Sbjct: 909 TPYLKTFLSLVREDKITEFQAPEDAPKPVTPPVTHFPVEEPATTLDDFKEELHDKFDREI 968
Query: 3013 XXXXXX-------DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANIEEFRAKKDLGD 2855
DDPT QLFSHQQAKDEALLWETIKARLTISTPEANI+EFRAKKDLGD
Sbjct: 969 FTSDRGHTNCVQTDDPTIQLFSHQQAKDEALLWETIKARLTISTPEANIDEFRAKKDLGD 1028
Query: 2854 ILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSINQIKGGERRQSPDFHEHQIL 2675
ILWANYH+AM LPKEQP+FSEDLWTRCAEEVQNTYLKKS+ Q+KGGERRQSPDFHEHQIL
Sbjct: 1029 ILWANYHRAMGLPKEQPDFSEDLWTRCAEEVQNTYLKKSLAQLKGGERRQSPDFHEHQIL 1088
Query: 2674 IFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCE 2495
IFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCE
Sbjct: 1089 IFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALGPNNIMINCE 1148
Query: 2494 KTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDI 2315
KTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDI
Sbjct: 1149 KTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDI 1208
Query: 2314 KLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCP 2135
KLSPKIF+GTLSIMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCP
Sbjct: 1209 KLSPKIFMGTLSIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCP 1268
Query: 2134 EKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKK 1955
EKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQ+K
Sbjct: 1269 EKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQRK 1328
Query: 1954 AGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 1787
AGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QAHLHQVTVRDLVKFGGSPFL
Sbjct: 1329 AGVKDAIANVVANYSLDAKLAYSLGDDLQDLLSPHQAHLHQVTVRDLVKFGGSPFL 1384
>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
Length = 1368
Score = 2011 bits (5210), Expect = 0.0
Identities = 1002/1196 (83%), Positives = 1054/1196 (88%), Gaps = 7/1196 (0%)
Frame = -1
Query: 5353 LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGA 5174
LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLT+GHL APNQPT+TAQRLETKGA
Sbjct: 189 LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTIGHLQAPNQPTVTAQRLETKGA 248
Query: 5173 NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKE 4994
NHLFIFQRGNYLTPERRTFTTT+ YVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKE
Sbjct: 249 NHLFIFQRGNYLTPERRTFTTTDPYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKE 308
Query: 4993 AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLR 4814
AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEF ASLDSHTCFEDVLSGNL+QRLLR
Sbjct: 309 AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFAASLDSHTCFEDVLSGNLLQRLLR 368
Query: 4813 PLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPV 4634
PLR+D+QR+L FFRGRPSFVKLIKALDWQPITLEFPVR VNTRLRGPPGF +PFT+P PV
Sbjct: 369 PLRADMQRILHFFRGRPSFVKLIKALDWQPITLEFPVRRVNTRLRGPPGFLSPFTRPQPV 428
Query: 4633 NPDDADTMRAFREFXXXXXXXXXXTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHE 4454
NPDDA+T +FREF T+ + LE S E+ +HTSLKV LS EQL ALHE
Sbjct: 429 NPDDAETTESFREFIQPLNPSPTATVTEMLENSTESDVTHTSLKVVPQSLSPEQLSALHE 488
Query: 4453 LGNTRLGGPLLPKITXXXXXXXXXXXXXXXXXPTQASASLNQGDHTDEAPVNSDPATLPW 4274
LGN+R GGP+LPK + T S+ L + H P P
Sbjct: 489 LGNSRCGGPMLPKRSSNH---------------THTSSDLLRRRH----PRQQRSTNPPM 529
Query: 4273 VAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGL 4094
+ K +GFEALEIQTDPSTG+ IMPI D R+LP+A +P HW+ P K++ TLR L
Sbjct: 530 GSLAAKAKRIGFEALEIQTDPSTGQPIMPITDTRELPRAIMPAHWDSPQFEKIIATLRNL 589
Query: 4093 NRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGA 3914
NRFPTPW PDRARARAFTSDVKNSRTGKALHRE+QTWKETQTMLT+N + AISVIHGA
Sbjct: 590 NRFPTPWSPDRARARAFTSDVKNSRTGKALHRESQTWKETQTMLTDNAEIHTAISVIHGA 649
Query: 3913 GGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPV 3734
GGSGKSQALQTLLRQNP+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV S+ PV
Sbjct: 650 GGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVSSRGPV 709
Query: 3733 VIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSEL 3554
VIFDDYGKLPQGYIEAFAMTHA+LEL+ILTGDPRQSTHHEANEEALISKL+PATT FSEL
Sbjct: 710 VIFDDYGKLPQGYIEAFAMTHANLELIILTGDPRQSTHHEANEEALISKLSPATTTFSEL 769
Query: 3553 SRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHK 3374
SRYYINATHRNSKFLANKLG+YSSN CPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGHK
Sbjct: 770 SRYYINATHRNSKFLANKLGIYSSNHCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHK 829
Query: 3373 VSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEA 3194
VSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDS HFVNSNAQSSAFWEKLEA
Sbjct: 830 VSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSNHFVNSNAQSSAFWEKLEA 889
Query: 3193 TPYLKTFLSLVREDKIEEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLXXXXXXXX 3014
TPYLKTFLSLVREDKIEEFS PVE+ TT LDDF+E L
Sbjct: 890 TPYLKTFLSLVREDKIEEFSAPPDPPKSVMPPVTHFPVEECTTALDDFREELHDKFDREI 949
Query: 3013 XXXXXX-------DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANIEEFRAKKDLGD 2855
DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANIEEFRAKKDLGD
Sbjct: 950 FTEAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANIEEFRAKKDLGD 1009
Query: 2854 ILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSINQIKGGERRQSPDFHEHQIL 2675
ILW NYHKAM LPKEQP+FSE+LWTRCAEEVQNTYLKKS+NQ+KGGERRQSPDFHEHQIL
Sbjct: 1010 ILWTNYHKAMNLPKEQPDFSEELWTRCAEEVQNTYLKKSLNQLKGGERRQSPDFHEHQIL 1069
Query: 2674 IFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCE 2495
IFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCE
Sbjct: 1070 IFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCE 1129
Query: 2494 KTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDI 2315
KTPQDLSRWVL+YWDFSKP+YANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDI
Sbjct: 1130 KTPQDLSRWVLSYWDFSKPAYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDI 1189
Query: 2314 KLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCP 2135
KLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF IPEGTAQIYAGDDCAIAQVCP
Sbjct: 1190 KLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFNIPEGTAQIYAGDDCAIAQVCP 1249
Query: 2134 EKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKK 1955
EKPSFALLK+RIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKK
Sbjct: 1250 EKPSFALLKDRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKK 1309
Query: 1954 AGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 1787
AGVKDAI+NV+ANYSLDAKLAYSLGD+L DLLSPRQAHLHQVTVRDLVKFGGSPFL
Sbjct: 1310 AGVKDAITNVVANYSLDAKLAYSLGDELHDLLSPRQAHLHQVTVRDLVKFGGSPFL 1365
>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 1992 bits (5161), Expect = 0.0
Identities = 997/1201 (83%), Positives = 1043/1201 (86%), Gaps = 12/1201 (0%)
Frame = -1
Query: 5353 LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGA 5174
LYPQIYTLTYSEDGFMYIPGGHAGASYFHKY QLEWLTVGHLT P Q T+TAQRLETKGA
Sbjct: 189 LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYSQLEWLTVGHLTTPGQITVTAQRLETKGA 248
Query: 5173 NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKE 4994
NHLFIFQRGNYLTPERRTFTTTEHYVTVPD+FLP KYNCRTPISKTIMMQMFFYIKSVKE
Sbjct: 249 NHLFIFQRGNYLTPERRTFTTTEHYVTVPDVFLPAKYNCRTPISKTIMMQMFFYIKSVKE 308
Query: 4993 AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLR 4814
AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LR
Sbjct: 309 AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLR 368
Query: 4813 PLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPV 4634
PL+S I ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PV
Sbjct: 369 PLKSGITQLLNFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPV 428
Query: 4633 NPDDADTMRAFREFXXXXXXXXXXTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHE 4454
NPDDA+T ++F+ F +LE AE H SL + L QL ALHE
Sbjct: 429 NPDDAETTQSFQAFCQATITAEA-----ALEQQAETPDEHQSLSLKCPTLPEHQLWALHE 483
Query: 4453 LGNTRLGGPLLPKITXXXXXXXXXXXXXXXXXPTQASASLN-----QGDHTDEAPVNSDP 4289
LGNTR GGPLLPK A S N + T + P DP
Sbjct: 484 LGNTRCGGPLLPK-------GPAKLTTVEPCPDLPAENSANPEPPRKTTQTLDLPHPEDP 536
Query: 4288 ATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLT 4109
TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+A HW P + ++++
Sbjct: 537 TTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRAEGHAHWQGPDMERIIS 596
Query: 4108 TLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAIS 3929
TLR NR+PTPW PDR+RA+AFTSDVKNSRTGKALHRE+Q WKETQTML EN NLAIS
Sbjct: 597 TLRSFNRYPTPWNPDRSRAKAFTSDVKNSRTGKALHRESQVWKETQTMLAENSQTNLAIS 656
Query: 3928 VIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVC 3749
VIHGAGGSGKSQALQTLLRQ P LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVC
Sbjct: 657 VIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVC 716
Query: 3748 SKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATT 3569
S+ PVVIFDDYGKLPQGY+EAFA+THASLELVILTGDPRQSTHHE+NEEALISKL PAT
Sbjct: 717 SRCPVVIFDDYGKLPQGYLEAFALTHASLELVILTGDPRQSTHHESNEEALISKLPPATA 776
Query: 3568 IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFT 3389
IFSELSRYYINATHRNSKFLANKLGVYSSN CPLKVTYGFQPQPG+HLLVPSL+KKAAFT
Sbjct: 777 IFSELSRYYINATHRNSKFLANKLGVYSSNPCPLKVTYGFQPQPGLHLLVPSLVKKAAFT 836
Query: 3388 DAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFW 3209
DAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFW
Sbjct: 837 DAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFW 896
Query: 3208 EKLEATPYLKTFLSLVREDKIEEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLXXX 3029
EKLEATPYLKTFLSLVREDKIEEF+ PVED TTTLDDFKE L
Sbjct: 897 EKLEATPYLKTFLSLVREDKIEEFTATTAEAKPVAPPCTHFPVEDGTTTLDDFKEELHDK 956
Query: 3028 XXXXXXXXXXX-------DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANIEEFRAK 2870
DDPTTQLFSHQQAKDEALLWETI ARLTIS PEAN+ EFRAK
Sbjct: 957 FDREIFNPTHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTISNPEANLAEFRAK 1016
Query: 2869 KDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSINQIKGGERRQSPDFH 2690
KDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+ QIKGGERRQSPDFH
Sbjct: 1017 KDLGDILWENYRKAMKLPNEQPDFSEDLWIRCAEEVQNTYLKKSVAQIKGGERRQSPDFH 1076
Query: 2689 EHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNI 2510
EHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR+ALSPNNI
Sbjct: 1077 EHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFREALSPNNI 1136
Query: 2509 MINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIE 2330
MINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIE
Sbjct: 1137 MINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIE 1196
Query: 2329 GYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAI 2150
GYLDIKLSPKIFLGTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAI
Sbjct: 1197 GYLDIKLSPKIFLGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAI 1256
Query: 2149 AQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELA 1970
AQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELA
Sbjct: 1257 AQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELA 1316
Query: 1969 KAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPF 1790
KAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QAHLHQVTVRDLVKFGGSPF
Sbjct: 1317 KAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQAHLHQVTVRDLVKFGGSPF 1376
Query: 1789 L 1787
L
Sbjct: 1377 L 1377
>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 1989 bits (5152), Expect = 0.0
Identities = 993/1196 (83%), Positives = 1042/1196 (87%), Gaps = 7/1196 (0%)
Frame = -1
Query: 5353 LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGA 5174
LYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT P Q T+TAQRLETKGA
Sbjct: 189 LYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGA 248
Query: 5173 NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKE 4994
NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKE
Sbjct: 249 NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKE 308
Query: 4993 AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLR 4814
AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LR
Sbjct: 309 AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLR 368
Query: 4813 PLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPV 4634
PLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PV
Sbjct: 369 PLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPV 428
Query: 4633 NPDDADTMRAFREFXXXXXXXXXXTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHE 4454
NPDDA+T ++F+ F + +L +E H SL + L QL ALHE
Sbjct: 429 NPDDAETTQSFQAFCQATAT-----VEATLAQQSETPDEHQSLSLKCPTLPEHQLWALHE 483
Query: 4453 LGNTRLGGPLLPKITXXXXXXXXXXXXXXXXXPTQASASLNQGDHTDEAPVNSDPATLPW 4274
LGN R GGPLLPK P ++ + + P DP+TLPW
Sbjct: 484 LGNARCGGPLLPK--GPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSDLPHPQDPSTLPW 541
Query: 4273 VAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGL 4094
VAWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+A HW P + ++L+TLR L
Sbjct: 542 VAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRSL 601
Query: 4093 NRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGA 3914
NR+PTPW PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLTEN NLAISVIHGA
Sbjct: 602 NRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGA 661
Query: 3913 GGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPV 3734
GGSGKSQALQTLLRQ P LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PV
Sbjct: 662 GGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPV 721
Query: 3733 VIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSEL 3554
VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSEL
Sbjct: 722 VIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSEL 781
Query: 3553 SRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHK 3374
SRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGHK
Sbjct: 782 SRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHK 841
Query: 3373 VSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEA 3194
VSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEA
Sbjct: 842 VSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEA 901
Query: 3193 TPYLKTFLSLVREDKIEEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLXXXXXXXX 3014
TPYLKTFLSLVREDKIEEF+ PVED TTTLDDFKE L
Sbjct: 902 TPYLKTFLSLVREDKIEEFTAIPAEAKHVAPPCTHFPVEDGTTTLDDFKEELRDKFDREI 961
Query: 3013 XXXXXX-------DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANIEEFRAKKDLGD 2855
DDPTTQLFSHQQAKDEALLWETI ARLT+S PEAN+ EFRAKKDLGD
Sbjct: 962 FNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGD 1021
Query: 2854 ILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSINQIKGGERRQSPDFHEHQIL 2675
ILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS++QIKGGERRQSPDFHEHQIL
Sbjct: 1022 ILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQIL 1081
Query: 2674 IFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCE 2495
IFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCE
Sbjct: 1082 IFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCE 1141
Query: 2494 KTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDI 2315
KTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDI
Sbjct: 1142 KTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDI 1201
Query: 2314 KLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCP 2135
KLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCP
Sbjct: 1202 KLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCP 1261
Query: 2134 EKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKK 1955
EKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKK
Sbjct: 1262 EKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKK 1321
Query: 1954 AGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 1787
AGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QA LHQVTVRDLVKFGGS FL
Sbjct: 1322 AGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQARLHQVTVRDLVKFGGSSFL 1377
>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 1989 bits (5152), Expect = 0.0
Identities = 993/1196 (83%), Positives = 1043/1196 (87%), Gaps = 7/1196 (0%)
Frame = -1
Query: 5353 LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGA 5174
LYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT P Q T+TAQRLETKGA
Sbjct: 189 LYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGA 248
Query: 5173 NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKE 4994
NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKE
Sbjct: 249 NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKE 308
Query: 4993 AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLR 4814
AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LR
Sbjct: 309 AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLR 368
Query: 4813 PLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPV 4634
PLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PV
Sbjct: 369 PLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPV 428
Query: 4633 NPDDADTMRAFREFXXXXXXXXXXTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHE 4454
NPDDA+T ++F+ F + +L +E H SL + + L QL ALHE
Sbjct: 429 NPDDAETTQSFQAFCQATAT-----VEXTLAQQSETPDEHQSLSLKCSTLPEHQLWALHE 483
Query: 4453 LGNTRLGGPLLPKITXXXXXXXXXXXXXXXXXPTQASASLNQGDHTDEAPVNSDPATLPW 4274
LGN R GGPLLPK P ++ + + P DP+TLPW
Sbjct: 484 LGNARCGGPLLPK--GPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSDLPHPQDPSTLPW 541
Query: 4273 VAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGL 4094
VAWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+A HW P + ++L+TLRGL
Sbjct: 542 VAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRGL 601
Query: 4093 NRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGA 3914
NR+PTPW PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLTEN NLAISVIHGA
Sbjct: 602 NRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGA 661
Query: 3913 GGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPV 3734
GGSGKSQALQTLLRQ P LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PV
Sbjct: 662 GGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPV 721
Query: 3733 VIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSEL 3554
VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSEL
Sbjct: 722 VIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSEL 781
Query: 3553 SRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHK 3374
SRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGHK
Sbjct: 782 SRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHK 841
Query: 3373 VSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEA 3194
VSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEA
Sbjct: 842 VSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEA 901
Query: 3193 TPYLKTFLSLVREDKIEEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLXXXXXXXX 3014
TPYLKTFLSLVREDKIEEF+ PVED TTTLDDFKE L
Sbjct: 902 TPYLKTFLSLVREDKIEEFTAIPAEAKRVAPPCTHFPVEDGTTTLDDFKEELRDKFDREI 961
Query: 3013 XXXXXX-------DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANIEEFRAKKDLGD 2855
DDPTTQLFSHQQAKDEALLWETI ARLT+S PEAN+ EFRAKKDLGD
Sbjct: 962 FNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGD 1021
Query: 2854 ILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSINQIKGGERRQSPDFHEHQIL 2675
ILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS++QIKGGERRQSPDFHEHQIL
Sbjct: 1022 ILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQIL 1081
Query: 2674 IFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCE 2495
IFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCE
Sbjct: 1082 IFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCE 1141
Query: 2494 KTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDI 2315
KTPQDLSRWVLN WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDI
Sbjct: 1142 KTPQDLSRWVLNCWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDI 1201
Query: 2314 KLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCP 2135
KLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCP
Sbjct: 1202 KLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCP 1261
Query: 2134 EKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKK 1955
EKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKK
Sbjct: 1262 EKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKK 1321
Query: 1954 AGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 1787
AGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QA LHQVTVRDLVKFGGS FL
Sbjct: 1322 AGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQARLHQVTVRDLVKFGGSSFL 1377
>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 1988 bits (5151), Expect = 0.0
Identities = 993/1196 (83%), Positives = 1043/1196 (87%), Gaps = 7/1196 (0%)
Frame = -1
Query: 5353 LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGA 5174
LYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT P Q T+TAQRLETKGA
Sbjct: 189 LYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGA 248
Query: 5173 NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKE 4994
NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKE
Sbjct: 249 NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKE 308
Query: 4993 AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLR 4814
AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LR
Sbjct: 309 AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLR 368
Query: 4813 PLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPV 4634
PLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PV
Sbjct: 369 PLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPV 428
Query: 4633 NPDDADTMRAFREFXXXXXXXXXXTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHE 4454
NPDDA+T ++F+ F + +L +E H SL + + L QL ALHE
Sbjct: 429 NPDDAETTQSFQAFCQATAT-----VEATLAQQSETPDEHQSLSLKCSTLPEHQLWALHE 483
Query: 4453 LGNTRLGGPLLPKITXXXXXXXXXXXXXXXXXPTQASASLNQGDHTDEAPVNSDPATLPW 4274
LGN R GGPLLPK P ++ + + P DP+TLPW
Sbjct: 484 LGNARCGGPLLPK--GPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSDLPHPQDPSTLPW 541
Query: 4273 VAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGL 4094
VAWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+A HW P + ++L+TLRGL
Sbjct: 542 VAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRGL 601
Query: 4093 NRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGA 3914
NR+PTPW PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLTEN NLAISVIHGA
Sbjct: 602 NRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGA 661
Query: 3913 GGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPV 3734
GGSGKSQALQTLLRQ P LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PV
Sbjct: 662 GGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPV 721
Query: 3733 VIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSEL 3554
VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSEL
Sbjct: 722 VIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSEL 781
Query: 3553 SRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHK 3374
SRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGHK
Sbjct: 782 SRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHK 841
Query: 3373 VSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEA 3194
VSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEA
Sbjct: 842 VSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEA 901
Query: 3193 TPYLKTFLSLVREDKIEEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLXXXXXXXX 3014
TPYLKTFLSLVREDKIEEF+ PVED TTTLDDFKE L
Sbjct: 902 TPYLKTFLSLVREDKIEEFTAIPAEAKRVAPPCTHFPVEDGTTTLDDFKEELRDKFDREI 961
Query: 3013 XXXXXX-------DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANIEEFRAKKDLGD 2855
DDPTTQLFSHQQAKDEALLWETI ARLT+S PEAN+ EFRAKKDLGD
Sbjct: 962 FNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGD 1021
Query: 2854 ILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSINQIKGGERRQSPDFHEHQIL 2675
ILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS++QIKGGERRQSPDFHEHQIL
Sbjct: 1022 ILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQIL 1081
Query: 2674 IFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCE 2495
IFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCE
Sbjct: 1082 IFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCE 1141
Query: 2494 KTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDI 2315
KTPQDLSRWVLN WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDI
Sbjct: 1142 KTPQDLSRWVLNCWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDI 1201
Query: 2314 KLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCP 2135
KLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCP
Sbjct: 1202 KLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCP 1261
Query: 2134 EKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKK 1955
EKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKK
Sbjct: 1262 EKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKK 1321
Query: 1954 AGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 1787
AGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QA LHQVTVRDLVKFGGS FL
Sbjct: 1322 AGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQARLHQVTVRDLVKFGGSSFL 1377
>emb|CEN56830.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 1987 bits (5148), Expect = 0.0
Identities = 989/1197 (82%), Positives = 1045/1197 (87%), Gaps = 8/1197 (0%)
Frame = -1
Query: 5353 LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGA 5174
L+PQIYTLTYSEDGFMYIPGGHAGASYFHKY QLEWLTVGHLTAP T+TAQRLETKGA
Sbjct: 189 LHPQIYTLTYSEDGFMYIPGGHAGASYFHKYSQLEWLTVGHLTAPGLLTVTAQRLETKGA 248
Query: 5173 NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKE 4994
NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKE
Sbjct: 249 NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKE 308
Query: 4993 AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLR 4814
AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LR
Sbjct: 309 AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRILR 368
Query: 4813 PLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPV 4634
PL S ++L FFRGRPSFVKLI+ALDWQPITLEFPVR VNT LRGPPGF +PFT+P PV
Sbjct: 369 PLTSGATQILNFFRGRPSFVKLIQALDWQPITLEFPVRKVNTLLRGPPGFDSPFTRPQPV 428
Query: 4633 NPDDADTMRAFREFXXXXXXXXXXTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHE 4454
NPDDA+T +F+ F + LE AE H SL++ LS QL ALHE
Sbjct: 429 NPDDAETTHSFQAFCQAAAA-----VETILEQQAETPDEHQSLRLDCPTLSEHQLWALHE 483
Query: 4453 LGNTRLGGPLLPKITXXXXXXXXXXXXXXXXXPTQASASLNQGD-HTDEAPVNSDPATLP 4277
LGN R GGPLLP+ T A+ +Q + P DP TLP
Sbjct: 484 LGNARCGGPLLPQ---RPDTSTVVEPCPDLPPETHAAPEPSQRNTQAPNLPSPQDPTTLP 540
Query: 4276 WVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRG 4097
WVAWLPKLNALGFEALEIQ DPSTG +IMPI D ++LP+A P HW P + ++++TLR
Sbjct: 541 WVAWLPKLNALGFEALEIQNDPSTGNMIMPITDTKELPRAIGPAHWQGPDMEQIISTLRS 600
Query: 4096 LNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHG 3917
LNR+PTPW PDR+RARAFTSDVKNSRTGKALHRE+Q WKETQTMLTE+ NLAISVIHG
Sbjct: 601 LNRYPTPWNPDRSRARAFTSDVKNSRTGKALHRESQVWKETQTMLTESTQTNLAISVIHG 660
Query: 3916 AGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSP 3737
AGGSGKSQALQTLLRQ+P LP+EVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ P
Sbjct: 661 AGGSGKSQALQTLLRQHPSLPVEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCP 720
Query: 3736 VVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSE 3557
VVIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHEANEEALISKL PATTIFSE
Sbjct: 721 VVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLPPATTIFSE 780
Query: 3556 LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGH 3377
LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYG QPQPG+HLLVPSLMKKAAFTDAGH
Sbjct: 781 LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGSQPQPGLHLLVPSLMKKAAFTDAGH 840
Query: 3376 KVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLE 3197
KVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHF+NSNAQSSAFWEKLE
Sbjct: 841 KVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFINSNAQSSAFWEKLE 900
Query: 3196 ATPYLKTFLSLVREDKIEEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLXXXXXXX 3017
ATPYLKTFLSLVRED++ EFS PVED TTTLDDF+E L
Sbjct: 901 ATPYLKTFLSLVREDRVAEFSASPADPTPVAPPCTHFPVEDGTTTLDDFREELQDKFDRE 960
Query: 3016 XXXXXXX-------DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANIEEFRAKKDLG 2858
D+PTTQLF+HQQAKDEALLWETI ARLTIS+PEAN+ EFRAKKDLG
Sbjct: 961 IFNQAHGHTNCVQTDNPTTQLFAHQQAKDEALLWETINARLTISSPEANLAEFRAKKDLG 1020
Query: 2857 DILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSINQIKGGERRQSPDFHEHQI 2678
DILW NY KAMKLP EQP+FSEDLWTRCAEEVQNTYLKKS+ QIKGG+RRQSPDFHEHQI
Sbjct: 1021 DILWENYRKAMKLPNEQPDFSEDLWTRCAEEVQNTYLKKSVAQIKGGDRRQSPDFHEHQI 1080
Query: 2677 LIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINC 2498
LIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINC
Sbjct: 1081 LIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINC 1140
Query: 2497 EKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLD 2318
EKTPQDLSRWVLN+WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLD
Sbjct: 1141 EKTPQDLSRWVLNHWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLD 1200
Query: 2317 IKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVC 2138
IKLSPKIFLGTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEG AQIYAGDDCAI+QVC
Sbjct: 1201 IKLSPKIFLGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGAAQIYAGDDCAISQVC 1260
Query: 2137 PEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQK 1958
PEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQK
Sbjct: 1261 PEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQK 1320
Query: 1957 KAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 1787
KAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QAHLHQVTVRDLVKFGGSPFL
Sbjct: 1321 KAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQAHLHQVTVRDLVKFGGSPFL 1377
>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 1986 bits (5145), Expect = 0.0
Identities = 992/1196 (82%), Positives = 1042/1196 (87%), Gaps = 7/1196 (0%)
Frame = -1
Query: 5353 LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGA 5174
LYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT P Q T+TAQRLETKGA
Sbjct: 189 LYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGA 248
Query: 5173 NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKE 4994
NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKE
Sbjct: 249 NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKE 308
Query: 4993 AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLR 4814
AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LR
Sbjct: 309 AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLR 368
Query: 4813 PLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPV 4634
PLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PV
Sbjct: 369 PLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPV 428
Query: 4633 NPDDADTMRAFREFXXXXXXXXXXTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHE 4454
NPDDA+T ++F+ F + +L +E H SL + + L QL ALHE
Sbjct: 429 NPDDAETTQSFQAFCQATAT-----VEATLAQQSETPDEHQSLSLKCSTLPEHQLWALHE 483
Query: 4453 LGNTRLGGPLLPKITXXXXXXXXXXXXXXXXXPTQASASLNQGDHTDEAPVNSDPATLPW 4274
LGN R G PLLPK P ++ + + P DP+TLPW
Sbjct: 484 LGNARCGAPLLPK--GPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSDLPHPQDPSTLPW 541
Query: 4273 VAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGL 4094
VAWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+A HW P + ++L+TLRGL
Sbjct: 542 VAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRGL 601
Query: 4093 NRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGA 3914
NR+PTPW PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLTEN NLAISVIHGA
Sbjct: 602 NRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGA 661
Query: 3913 GGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPV 3734
GGSGKSQALQTLLRQ P LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PV
Sbjct: 662 GGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPV 721
Query: 3733 VIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSEL 3554
VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSEL
Sbjct: 722 VIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSEL 781
Query: 3553 SRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHK 3374
SRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGHK
Sbjct: 782 SRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHK 841
Query: 3373 VSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEA 3194
VSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEA
Sbjct: 842 VSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEA 901
Query: 3193 TPYLKTFLSLVREDKIEEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLXXXXXXXX 3014
TPYLKTFLSLVREDKIEEF+ PVED TTTLDDFKE L
Sbjct: 902 TPYLKTFLSLVREDKIEEFTAIPAEAKRVAPPCTHFPVEDGTTTLDDFKEELRDKFDREI 961
Query: 3013 XXXXXX-------DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANIEEFRAKKDLGD 2855
DDPTTQLFSHQQAKDEALLWETI ARLT+S PEAN+ EFRAKKDLGD
Sbjct: 962 FNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGD 1021
Query: 2854 ILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSINQIKGGERRQSPDFHEHQIL 2675
ILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS++QIKGGERRQSPDFHEHQIL
Sbjct: 1022 ILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQIL 1081
Query: 2674 IFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCE 2495
IFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCE
Sbjct: 1082 IFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCE 1141
Query: 2494 KTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDI 2315
KTPQDLSRWVLN WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDI
Sbjct: 1142 KTPQDLSRWVLNCWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDI 1201
Query: 2314 KLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCP 2135
KLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCP
Sbjct: 1202 KLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCP 1261
Query: 2134 EKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKK 1955
EKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKK
Sbjct: 1262 EKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKK 1321
Query: 1954 AGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 1787
AGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QA LHQVTVRDLVKFGGS FL
Sbjct: 1322 AGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQARLHQVTVRDLVKFGGSSFL 1377
>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 1983 bits (5138), Expect = 0.0
Identities = 990/1196 (82%), Positives = 1040/1196 (86%), Gaps = 7/1196 (0%)
Frame = -1
Query: 5353 LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGA 5174
LYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT P Q T+TAQRLETKGA
Sbjct: 189 LYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGA 248
Query: 5173 NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKE 4994
NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKE
Sbjct: 249 NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKE 308
Query: 4993 AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLR 4814
AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LR
Sbjct: 309 AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLR 368
Query: 4813 PLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPV 4634
PLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PV
Sbjct: 369 PLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPV 428
Query: 4633 NPDDADTMRAFREFXXXXXXXXXXTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHE 4454
NPDDA+T ++F+ F + +L +E H SL + L QL ALHE
Sbjct: 429 NPDDAETTQSFQAFCQATAT-----VEATLAQQSETPDEHQSLSLKCPTLPEHQLWALHE 483
Query: 4453 LGNTRLGGPLLPKITXXXXXXXXXXXXXXXXXPTQASASLNQGDHTDEAPVNSDPATLPW 4274
LGN R GGPLLPK P ++ + + P DP+TLPW
Sbjct: 484 LGNARCGGPLLPK--GPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSDLPHPQDPSTLPW 541
Query: 4273 VAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGL 4094
VAWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+A HW P + ++L+TLR L
Sbjct: 542 VAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRSL 601
Query: 4093 NRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGA 3914
NR+PTPW PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLTEN NLAISVIHGA
Sbjct: 602 NRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGA 661
Query: 3913 GGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPV 3734
GGSGKSQALQTLLRQ P LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PV
Sbjct: 662 GGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPV 721
Query: 3733 VIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSEL 3554
VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSEL
Sbjct: 722 VIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSEL 781
Query: 3553 SRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHK 3374
SRYYINATHRNSK LANKLGVYSSNSCPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGHK
Sbjct: 782 SRYYINATHRNSKLLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHK 841
Query: 3373 VSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEA 3194
VSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEA
Sbjct: 842 VSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEA 901
Query: 3193 TPYLKTFLSLVREDKIEEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLXXXXXXXX 3014
TPYLKTFLSLVREDKIEEF+ PVED TTTLDDFKE L
Sbjct: 902 TPYLKTFLSLVREDKIEEFTAIPAEAKHVAPPCTHFPVEDGTTTLDDFKEELRDKFDREI 961
Query: 3013 XXXXXX-------DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANIEEFRAKKDLGD 2855
DDPTTQLFSHQQAKDEALLWETI ARLT+S PEAN+ EFRAKKDLGD
Sbjct: 962 FNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGD 1021
Query: 2854 ILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSINQIKGGERRQSPDFHEHQIL 2675
ILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS++QIKGGERRQSPDFHEH IL
Sbjct: 1022 ILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHHIL 1081
Query: 2674 IFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCE 2495
IFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCE
Sbjct: 1082 IFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCE 1141
Query: 2494 KTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDI 2315
+TPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDI
Sbjct: 1142 RTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDI 1201
Query: 2314 KLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCP 2135
KLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCP
Sbjct: 1202 KLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCP 1261
Query: 2134 EKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKK 1955
EKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKK
Sbjct: 1262 EKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKK 1321
Query: 1954 AGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 1787
AGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QA LHQVTVRDLVKFGGS FL
Sbjct: 1322 AGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQARLHQVTVRDLVKFGGSSFL 1377
>gb|AMD78101.1| RdRP [Plantago asiatica mosaic virus]
Length = 1380
Score = 1979 bits (5127), Expect = 0.0
Identities = 985/1197 (82%), Positives = 1042/1197 (87%), Gaps = 8/1197 (0%)
Frame = -1
Query: 5353 LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGA 5174
L+PQIYTLTYSEDGFMYIPGGHAGASYFHKY QLEWLTVGHLTAP T+TAQRLETKGA
Sbjct: 189 LHPQIYTLTYSEDGFMYIPGGHAGASYFHKYSQLEWLTVGHLTAPGLLTVTAQRLETKGA 248
Query: 5173 NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKE 4994
NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKE
Sbjct: 249 NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKE 308
Query: 4993 AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLR 4814
AKERDIWAKFRQLISTKELQHYQPSE TLLVNYFE TASLDSHTCFED+LSGNL+QR+LR
Sbjct: 309 AKERDIWAKFRQLISTKELQHYQPSETTLLVNYFELTASLDSHTCFEDILSGNLLQRILR 368
Query: 4813 PLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPV 4634
PL S ++L FFRGRPSFVKLI+ALDWQPITLEFPVR V+T LRGPP F +PFT+P PV
Sbjct: 369 PLTSGATQILNFFRGRPSFVKLIQALDWQPITLEFPVRKVHTLLRGPPWFDSPFTRPQPV 428
Query: 4633 NPDDADTMRAFREFXXXXXXXXXXTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHE 4454
NPDDA+T F+ F + LE AE H SL++ LS QL +LHE
Sbjct: 429 NPDDAETTHIFQAFCQAAAA-----VETILEQQAETPEEHQSLRLDCPTLSEHQLWSLHE 483
Query: 4453 LGNTRLGGPLLPKITXXXXXXXXXXXXXXXXXPTQASASLNQGD-HTDEAPVNSDPATLP 4277
LGN R GGPLLP+ T A+ +Q + P DP TLP
Sbjct: 484 LGNARCGGPLLPQ---RPDTATVVEPCPDLPPETHAAPEPSQRNTQAPNLPSPQDPTTLP 540
Query: 4276 WVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRG 4097
WVAWLPKLNALGFEALEIQ DPSTG +IMPI D ++LP+A P HW +P + ++++TLR
Sbjct: 541 WVAWLPKLNALGFEALEIQNDPSTGNMIMPITDTKELPRAIGPAHWQDPDMEQIISTLRS 600
Query: 4096 LNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHG 3917
LNR+PTPW PDR+RARAFTSDVKNSRTGKALHRE+Q WKETQTMLTE+ NLAISVIHG
Sbjct: 601 LNRYPTPWNPDRSRARAFTSDVKNSRTGKALHRESQVWKETQTMLTESTQTNLAISVIHG 660
Query: 3916 AGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSP 3737
AGGSGKSQALQTLLRQ+P LP+EVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ P
Sbjct: 661 AGGSGKSQALQTLLRQHPSLPVEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCP 720
Query: 3736 VVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSE 3557
VVIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHEANEEALISKL PATTIFSE
Sbjct: 721 VVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLPPATTIFSE 780
Query: 3556 LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGH 3377
LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYG QPQPG+HLLVPSLMKKAAFTDAGH
Sbjct: 781 LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGSQPQPGLHLLVPSLMKKAAFTDAGH 840
Query: 3376 KVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLE 3197
KVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHF+NSNAQSSAFWEKLE
Sbjct: 841 KVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFINSNAQSSAFWEKLE 900
Query: 3196 ATPYLKTFLSLVREDKIEEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLXXXXXXX 3017
ATPYLKTFLSLVREDK+ EFS PVED TTTLDDF+E L
Sbjct: 901 ATPYLKTFLSLVREDKVAEFSASPADPTPVAPPCTHFPVEDGTTTLDDFREELQDKFDRE 960
Query: 3016 XXXXXXX-------DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANIEEFRAKKDLG 2858
D+PTTQLF+HQQAKDEALLWETI ARLTIS+PEAN+ EFRAKKDLG
Sbjct: 961 IFNQAHGHTNCVQTDNPTTQLFAHQQAKDEALLWETINARLTISSPEANLAEFRAKKDLG 1020
Query: 2857 DILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSINQIKGGERRQSPDFHEHQI 2678
DILW NY KAMKLP EQP+FSEDLWTRCAEEVQNTYLKKS+ QIKGG+RRQSPDFHEHQI
Sbjct: 1021 DILWENYRKAMKLPNEQPDFSEDLWTRCAEEVQNTYLKKSVAQIKGGDRRQSPDFHEHQI 1080
Query: 2677 LIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINC 2498
LIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINC
Sbjct: 1081 LIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINC 1140
Query: 2497 EKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLD 2318
EKTPQDLSRWVLN+WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLD
Sbjct: 1141 EKTPQDLSRWVLNHWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLD 1200
Query: 2317 IKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVC 2138
IKLSPKIFLGTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEG AQIYAGDDCAI+QVC
Sbjct: 1201 IKLSPKIFLGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGAAQIYAGDDCAISQVC 1260
Query: 2137 PEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQK 1958
PEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQK
Sbjct: 1261 PEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQK 1320
Query: 1957 KAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 1787
KAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QAHLHQVTVRDLVKFGGSPFL
Sbjct: 1321 KAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQAHLHQVTVRDLVKFGGSPFL 1377
>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 1979 bits (5126), Expect = 0.0
Identities = 988/1196 (82%), Positives = 1039/1196 (86%), Gaps = 7/1196 (0%)
Frame = -1
Query: 5353 LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGA 5174
LYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT P Q T+TAQRLETKGA
Sbjct: 189 LYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGA 248
Query: 5173 NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKE 4994
NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKE
Sbjct: 249 NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKE 308
Query: 4993 AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLR 4814
AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LR
Sbjct: 309 AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLR 368
Query: 4813 PLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPV 4634
PLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PV
Sbjct: 369 PLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPV 428
Query: 4633 NPDDADTMRAFREFXXXXXXXXXXTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHE 4454
NPDDA+T ++F+ F + +L +E H SL + L QL ALHE
Sbjct: 429 NPDDAETTQSFQAFCQATAT-----VEATLAQQSETPDEHQSLSLKCPTLPEHQLWALHE 483
Query: 4453 LGNTRLGGPLLPKITXXXXXXXXXXXXXXXXXPTQASASLNQGDHTDEAPVNSDPATLPW 4274
LGN R GGPLLPK P ++ + + P DP+TLPW
Sbjct: 484 LGNARCGGPLLPK--GPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSDLPHPQDPSTLPW 541
Query: 4273 VAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGL 4094
VAWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+A HW P ++++L+TLR L
Sbjct: 542 VAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMARILSTLRSL 601
Query: 4093 NRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGA 3914
NR+PTPW PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQ MLTEN NLAISVIHGA
Sbjct: 602 NRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQAMLTENSQTNLAISVIHGA 661
Query: 3913 GGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPV 3734
GGSGKSQALQTLLRQ P LPIEVVLPTNELRLDW KKLPHNPPEQFRTFERAFVCS+ PV
Sbjct: 662 GGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWPKKLPHNPPEQFRTFERAFVCSRCPV 721
Query: 3733 VIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSEL 3554
VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSEL
Sbjct: 722 VIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSEL 781
Query: 3553 SRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHK 3374
SRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQP+PG+HLLVPSL+KKAAFTDAGHK
Sbjct: 782 SRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPRPGLHLLVPSLVKKAAFTDAGHK 841
Query: 3373 VSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEA 3194
VSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEA
Sbjct: 842 VSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEA 901
Query: 3193 TPYLKTFLSLVREDKIEEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLXXXXXXXX 3014
TPYLKTFLSLVREDKIEEF+ PVED TTTLDDFKE L
Sbjct: 902 TPYLKTFLSLVREDKIEEFTAIPAEAKHVAPPCTHFPVEDGTTTLDDFKEELRDKFDREI 961
Query: 3013 XXXXXX-------DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANIEEFRAKKDLGD 2855
DDPTTQLFSHQQAKDEALLWETI ARLT+S PEAN+ EFRAKKDLGD
Sbjct: 962 FNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGD 1021
Query: 2854 ILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSINQIKGGERRQSPDFHEHQIL 2675
ILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS++QIKGGERRQSPDFHEHQIL
Sbjct: 1022 ILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQIL 1081
Query: 2674 IFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCE 2495
IFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCE
Sbjct: 1082 IFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCE 1141
Query: 2494 KTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDI 2315
KTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDI
Sbjct: 1142 KTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDI 1201
Query: 2314 KLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCP 2135
KLSPKIF+GTL+IMRLTGEGP FDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCP
Sbjct: 1202 KLSPKIFMGTLTIMRLTGEGPAFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCP 1261
Query: 2134 EKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKK 1955
EKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKK
Sbjct: 1262 EKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKK 1321
Query: 1954 AGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 1787
AGVKDAI+NV+ NYSLDAKLAYSLGDDLQDLLSP QA LHQVTVRDLVKFGGS FL
Sbjct: 1322 AGVKDAITNVVDNYSLDAKLAYSLGDDLQDLLSPHQARLHQVTVRDLVKFGGSSFL 1377
>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
replication protein; AltName: Full=156 kDa protein;
AltName: Full=ORF1 protein; Includes: RecName:
Full=RNA-directed RNA polymerase; Includes: RecName:
Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
[Plantago asiatica mosaic virus]
Length = 1385
Score = 1932 bits (5004), Expect = 0.0
Identities = 966/1196 (80%), Positives = 1024/1196 (85%), Gaps = 7/1196 (0%)
Frame = -1
Query: 5353 LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGA 5174
LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAP PT+TAQRLETKGA
Sbjct: 188 LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPGCPTVTAQRLETKGA 247
Query: 5173 NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKE 4994
NHLFIFQRGNY+TPERRTF T + YVTVP IFLPE YNCRTPISKT MMQMFFYIKS KE
Sbjct: 248 NHLFIFQRGNYITPERRTFATNDQYVTVPHIFLPENYNCRTPISKTTMMQMFFYIKSGKE 307
Query: 4993 AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLR 4814
A+ + +QLISTKELQHYQPSEITLLVNYFEFTA+LDSHTCFEDV L +
Sbjct: 308 AQREGHLGQVQQLISTKELQHYQPSEITLLVNYFEFTATLDSHTCFEDV-PPKLAPKTTP 366
Query: 4813 PLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPV 4634
I R+LQFFRGRPSFVKLIKALDWQPITLEFPVR V T +RGPPGF NPFT+P PV
Sbjct: 367 APPLGISRILQFFRGRPSFVKLIKALDWQPITLEFPVRDVRTTVRGPPGFKNPFTQPQPV 426
Query: 4633 NPDDADTMRAFREFXXXXXXXXXXTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHE 4454
NP+DAD F++F T+ LE SAE+ HT LKV + LS QL A+H
Sbjct: 427 NPEDADISSRFQDFSRATNSTPKPTVEAVLEASAESPDHHTQLKVLCSALSEGQLEAIHA 486
Query: 4453 LGNTRLGGPLLPKITXXXXXXXXXXXXXXXXXPTQASASLNQGDHTDEAPVNSDPATLPW 4274
LG++R GGPLLP++T +QAS + + D P +P TLPW
Sbjct: 487 LGHSRCGGPLLPELTAKSTPVEQCPDLPPCPTKSQASPASSNPSGPDAQPTAQNPETLPW 546
Query: 4273 VAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGL 4094
VAWLPKLNALGFEALE+Q DPSTGE+IMPI D ++LP+ATLP HW L ++L+TLR L
Sbjct: 547 VAWLPKLNALGFEALEVQHDPSTGEMIMPITDTQELPRATLPAHWQGHNLERILSTLRSL 606
Query: 4093 NRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGA 3914
NRFPTPW PDR RARAFTSDVKNSRTGKALHRE+QTWKETQTMLTEN LAISVIHGA
Sbjct: 607 NRFPTPWSPDRTRARAFTSDVKNSRTGKALHRESQTWKETQTMLTENTQTELAISVIHGA 666
Query: 3913 GGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPV 3734
GGSGKSQALQTLLRQ+ LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV S SPV
Sbjct: 667 GGSGKSQALQTLLRQDHSLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVSSHSPV 726
Query: 3733 VIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSEL 3554
VIFDDYGKLPQGY+EAFA+THA+LELVILTGDPRQSTHHE+NEEALISKL PATTI+S
Sbjct: 727 VIFDDYGKLPQGYLEAFALTHANLELVILTGDPRQSTHHESNEEALISKLPPATTIYSAF 786
Query: 3553 SRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHK 3374
SRYYINAT RNSKFLANKLGVYS+NSCPL VTYGFQP PG+HLLVPSLMKKAAFTDAGHK
Sbjct: 787 SRYYINATLRNSKFLANKLGVYSANSCPLNVTYGFQPLPGLHLLVPSLMKKAAFTDAGHK 846
Query: 3373 VSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEA 3194
VS+YAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHFVN+NAQSSAFWEKLEA
Sbjct: 847 VSSYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNTNAQSSAFWEKLEA 906
Query: 3193 TPYLKTFLSLVREDKIEEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLXXXXXXXX 3014
TPYLKTFLSLVREDKI EF PVE+ TTLDDFKE L
Sbjct: 907 TPYLKTFLSLVREDKITEFQAPADAPKPVTPPVTHFPVEEPATTLDDFKEELRDKFDREI 966
Query: 3013 XXXXXX-------DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANIEEFRAKKDLGD 2855
DDPTTQLFSHQQAKDEALLWE I+ARL ISTPEANIEEFRAKKDLGD
Sbjct: 967 FTSDRGHTNCVQTDDPTTQLFSHQQAKDEALLWEMIRARLKISTPEANIEEFRAKKDLGD 1026
Query: 2854 ILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSINQIKGGERRQSPDFHEHQIL 2675
ILW NYH+AM LPKEQP+FSEDLW RCAEEVQNTYLKK++ Q+KGGERRQSPDFHEHQIL
Sbjct: 1027 ILWVNYHRAMGLPKEQPDFSEDLWNRCAEEVQNTYLKKTMAQLKGGERRQSPDFHEHQIL 1086
Query: 2674 IFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCE 2495
IFLKSQWVKKMEKLGAK+IKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCE
Sbjct: 1087 IFLKSQWVKKMEKLGAKEIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCE 1146
Query: 2494 KTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDI 2315
KTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDI
Sbjct: 1147 KTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDI 1206
Query: 2314 KLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCP 2135
KLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCP
Sbjct: 1207 KLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCP 1266
Query: 2134 EKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKK 1955
EKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKK
Sbjct: 1267 EKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKK 1326
Query: 1954 AGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 1787
AGV+DAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QAHLHQVTVRDLVKFGGSPFL
Sbjct: 1327 AGVRDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQAHLHQVTVRDLVKFGGSPFL 1382
>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
[Tulip virus X]
Length = 1361
Score = 1652 bits (4277), Expect = 0.0
Identities = 835/1200 (69%), Positives = 941/1200 (78%), Gaps = 11/1200 (0%)
Frame = -1
Query: 5353 LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGA 5174
LYP++YTLTYS+DGFMYIPGGHAGASY+HKYDQL+WLT G+L + + T+TAQRLETKGA
Sbjct: 189 LYPEVYTLTYSDDGFMYIPGGHAGASYYHKYDQLQWLTAGYLISEST-TVTAQRLETKGA 247
Query: 5173 NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKE 4994
NHLFIFQRG YLTPERRTFTT YVTVP+IFLP N RTPI+KT+ MQ+FFYIKSVKE
Sbjct: 248 NHLFIFQRGRYLTPERRTFTTATSYVTVPEIFLPSSANARTPITKTLAMQIFFYIKSVKE 307
Query: 4993 AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLR 4814
+ERD+WAKFRQLISTKELQH+QP E TLLVNYF+F A+LDS TC ED+LSG+L+ RLLR
Sbjct: 308 CRERDLWAKFRQLISTKELQHFQPDEATLLVNYFDFVANLDSATCHEDILSGSLLTRLLR 367
Query: 4813 PLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPV 4634
P R + Q +++FF+G P KLIKAL WQP+ LEF V TV R PPGF +P +P PV
Sbjct: 368 PARVNWQALVRFFKGSPDHTKLIKALQWQPVLLEFKVSTVLVHKRTPPGFRHPLCRPLPV 427
Query: 4633 NPDDADTMRAFREFXXXXXXXXXXTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHE 4454
N DA T A ++ SL + + LS +QL ALH
Sbjct: 428 NEVDALTTAA---------------------------CANQSLPLDN--LSEDQLEALHV 458
Query: 4453 LGNTRLGG---PLLPKITXXXXXXXXXXXXXXXXXPTQASASLNQGDHTDEAPVNSDPAT 4283
LG+ R G P PK T + ++ + DP T
Sbjct: 459 LGSLRTDGESLPSPPKAPLETGPHPTPTISAAGPTKTVPTPNVEVSANPLTGTPLPDPDT 518
Query: 4282 LPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPG-LSKVLTT 4106
LPW AWLP L ALGFEA EIQTDP IMPI D++ LP T E+ + KV+ T
Sbjct: 519 LPWKAWLPHLRALGFEASEIQTDPRDHSTIMPITDIQTLPHETFDEYDSTSSPFDKVVIT 578
Query: 4105 LRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISV 3926
L+ LNR PTPW PDR RARA+ SD+KNSRTGKALH+E+Q WKETQT LTE L +SV
Sbjct: 579 LKQLNRSPTPWTPDRLRARAYASDIKNSRTGKALHKESQNWKETQTRLTETSETRLGLSV 638
Query: 3925 IHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 3746
IHGAGGSGKSQALQT+LR +P+LP+EVVLPTNELR DWL+KLPHNPPEQFRTFERAFV S
Sbjct: 639 IHGAGGSGKSQALQTMLRNHPDLPVEVVLPTNELRXDWLRKLPHNPPEQFRTFERAFVSS 698
Query: 3745 KSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTI 3566
+PVVIFDDYGKLPQG++EAFA+ L+L ILTGDPRQSTHHE+NE+A+I++L PAT I
Sbjct: 699 TAPVVIFDDYGKLPQGFLEAFALCRPGLKLAILTGDPRQSTHHESNEQAMIAQLEPATKI 758
Query: 3565 FSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTD 3386
FS L RYYINATHRN K LANKLGVYSSN PL V+YGF+P+PG+HLLVPSL+KKAAF D
Sbjct: 759 FSALCRYYINATHRNVKELANKLGVYSSNPSPLHVSYGFRPEPGLHLLVPSLVKKAAFAD 818
Query: 3385 AGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWE 3206
AGHKVSTYAGCQGITAP+VQILLD+DTTMC+ EVLYTALSRAVDSIHF+NSNAQSSAFWE
Sbjct: 819 AGHKVSTYAGCQGITAPKVQILLDSDTTMCSSEVLYTALSRAVDSIHFINSNAQSSAFWE 878
Query: 3205 KLEATPYLKTFLSLVREDKIEEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLXXXX 3026
KLEATPYLKTFLSLVRE K+EEF+ PVE+ + TL ++SL
Sbjct: 879 KLEATPYLKTFLSLVREHKLEEFTAVEDPPQEVAPPVTHFPVENASHTLGLIQDSLADKY 938
Query: 3025 XXXXXXXXXX-------DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANIEEFRAKK 2867
+D T QLFSHQQAKDEALLWETI ARL +STPEAN+ EF AKK
Sbjct: 939 DREILNTNHGFTNCVQTEDLTVQLFSHQQAKDEALLWETIDARLRLSTPEANLAEFHAKK 998
Query: 2866 DLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSINQIKGGERRQSPDFHE 2687
DLGD+LW NYH+AMKLPKEQP+FS +LW RCA EVQ TYL KS+ QIKGGERRQSPDF E
Sbjct: 999 DLGDVLWENYHRAMKLPKEQPDFSPELWERCAAEVQQTYLSKSLQQIKGGERRQSPDFPE 1058
Query: 2686 HQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIM 2507
++ILIFLKSQWVKKMEKLGA KIKPGQTIASFQQ AVMLYGTMARYMRR+RDAL PNNIM
Sbjct: 1059 NKILIFLKSQWVKKMEKLGAPKIKPGQTIASFQQAAVMLYGTMARYMRRYRDALGPNNIM 1118
Query: 2506 INCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEG 2327
INCE+TP DLSRWV N+WDF+KP YANDFTAFDQSQDGAMLQFEILKAK+FNLPEWVIEG
Sbjct: 1119 INCERTPADLSRWVRNHWDFTKPXYANDFTAFDQSQDGAMLQFEILKAKFFNLPEWVIEG 1178
Query: 2326 YLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIA 2147
YLDIKL+P+IF GTL+IMRLTGEGPTFDANTECNIAYTHTRF IP+ AQ+YAGDDCAIA
Sbjct: 1179 YLDIKLTPQIFTGTLAIMRLTGEGPTFDANTECNIAYTHTRFHIPDHVAQLYAGDDCAIA 1238
Query: 2146 QVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAK 1967
+VC EKPSFALLKNRIALQAKPAY PQ RG WAEFCGYLITPKGLIKDPLKLH+SLELAK
Sbjct: 1239 EVCQEKPSFALLKNRIALQAKPAYAPQTRGAWAEFCGYLITPKGLIKDPLKLHSSLELAK 1298
Query: 1966 AQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 1787
A +K G KDAI+NV+ANYSLDAK+AYSLGDDLQDLLSP QAHLHQVTVRDL KFGGSPFL
Sbjct: 1299 ALRKQGRKDAITNVVANYSLDAKMAYSLGDDLQDLLSPEQAHLHQVTVRDLTKFGGSPFL 1358
>gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
virus]
Length = 711
Score = 1276 bits (3303), Expect = 0.0
Identities = 632/708 (89%), Positives = 655/708 (92%), Gaps = 7/708 (0%)
Frame = -1
Query: 3889 LQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGK 3710
LQTLLRQ+P LP+EVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGK
Sbjct: 1 LQTLLRQHPSLPVEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGK 60
Query: 3709 LPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINAT 3530
LPQGY+EAFAMTHASLELVILTGDPRQSTHHEANEEALISKL PATTIFSELSRYYINAT
Sbjct: 61 LPQGYLEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLPPATTIFSELSRYYINAT 120
Query: 3529 HRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQ 3350
HRNSKFLANKLGVYSSNSCPLKVTYG QPQPG+HLLVPSLMKKAAFTDAGHKVSTYAGCQ
Sbjct: 121 HRNSKFLANKLGVYSSNSCPLKVTYGSQPQPGLHLLVPSLMKKAAFTDAGHKVSTYAGCQ 180
Query: 3349 GITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFL 3170
GITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHF+NSNAQSSAFWEKLEATPYLKTFL
Sbjct: 181 GITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFINSNAQSSAFWEKLEATPYLKTFL 240
Query: 3169 SLVREDKIEEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLXXXXXXXXXXXXXX-- 2996
SLVRED++ EFS PVED TTTLDDF+E L
Sbjct: 241 SLVREDRVAEFSASPADPTPVAPPCTHFPVEDGTTTLDDFREELQDKFDREIFNQAHGHT 300
Query: 2995 -----DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANIEEFRAKKDLGDILWANYHK 2831
D+PTTQLF+HQQAKDEALLWETI ARLTIS+PEAN+ EFRAKKDLGDILW NY K
Sbjct: 301 NCVQTDNPTTQLFAHQQAKDEALLWETINARLTISSPEANLAEFRAKKDLGDILWENYRK 360
Query: 2830 AMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSINQIKGGERRQSPDFHEHQILIFLKSQWV 2651
AMKLP EQP+FSEDLWTRCAEEVQNTYLKKS+ QIKGG+RRQSPDFHEHQILIFLKSQWV
Sbjct: 361 AMKLPNEQPDFSEDLWTRCAEEVQNTYLKKSVAQIKGGDRRQSPDFHEHQILIFLKSQWV 420
Query: 2650 KKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSR 2471
KKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSR
Sbjct: 421 KKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSR 480
Query: 2470 WVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFL 2291
WVLN+WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFL
Sbjct: 481 WVLNHWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFL 540
Query: 2290 GTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALL 2111
GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEG AQIYAGDDCAI+QVCPEKPSF+LL
Sbjct: 541 GTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGAAQIYAGDDCAISQVCPEKPSFSLL 600
Query: 2110 KNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAIS 1931
KNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+
Sbjct: 601 KNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAIT 660
Query: 1930 NVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 1787
NV+ANYSLDAKLAYSLGDDLQDLLSP QAHLHQVTVRDLVKFGGSPFL
Sbjct: 661 NVVANYSLDAKLAYSLGDDLQDLLSPHQAHLHQVTVRDLVKFGGSPFL 708
>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
RNA polymerase [Cassava common mosaic virus]
gi|1587823|prf||2207297A ORF 1 [Cassava common mosaic
virus]
Length = 1449
Score = 1043 bits (2696), Expect = 0.0
Identities = 532/850 (62%), Positives = 630/850 (74%), Gaps = 12/850 (1%)
Frame = -1
Query: 4300 NSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLS 4121
N+ A LPW W+PKLNALGFEA E Q P T +IMPI D+ K +P H
Sbjct: 612 NAKEAGLPWAVWMPKLNALGFEAKEKQISPITKSMIMPITDI----KTGIPVHRETKAPQ 667
Query: 4120 KVLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTAN 3941
++L L+ L+R PT W PD RA++FTSD+KN RTGK L +E+Q+WKE QT+ ++
Sbjct: 668 ELLDLLKALSRMPTLWTPDTLRAKSFTSDIKNGRTGKCLQQESQSWKEAQTLKVDHNIRP 727
Query: 3940 LAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFER 3761
+ +SVIHGAGGSGKS ALQ LLR +PELPI+V+LPTNELR+DWL KLP N PE FRTFE+
Sbjct: 728 VPLSVIHGAGGSGKSAALQDLLRDHPELPIQVILPTNELRMDWLSKLPRNRPENFRTFEK 787
Query: 3760 AFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLA 3581
A++ + +P +I DDYGKLPQGY+EAFA+TH ++EL++LTGD +QS HHE NE+A+I++L
Sbjct: 788 AYLQTNAPSIIMDDYGKLPQGYVEAFAVTHPNVELIVLTGDNKQSVHHETNEQAMIAQLE 847
Query: 3580 PATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKK 3401
P+T IFS+ SRYYINATHRN+K LAN LGVYS N+ LK+T+GFQP +HLLVPSL+KK
Sbjct: 848 PSTQIFSQFSRYYINATHRNAKKLANMLGVYSDNNKELKITHGFQPIKDIHLLVPSLIKK 907
Query: 3400 AAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQS 3221
AAF++AGHK STYAGCQGITA ++QILLD++T MC++EVLYTALSRAVDSIHF+N+ S
Sbjct: 908 AAFSEAGHKTSTYAGCQGITARKLQILLDSNTPMCSQEVLYTALSRAVDSIHFINTAPTS 967
Query: 3220 SAFWEKLEATPYLKTFLSLVREDKIEEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKES 3041
S FWEKLEATPYLKTFLS+VREDKI E+ PVE+ T L++F E
Sbjct: 968 SNFWEKLEATPYLKTFLSMVREDKILEWRPKEPEPAKEEPPKTHFPVENGNTILEEFTEE 1027
Query: 3040 L-------XXXXXXXXXXXXXXDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANIEE 2882
L D+ Q SHQQAKDEALLWETIKARL IS + N E
Sbjct: 1028 LAQKHEREIFNESHGHTNCVQTDNKIIQTLSHQQAKDEALLWETIKARLVISHKQHNWTE 1087
Query: 2881 FRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSINQIKGGERRQS 2702
F KKD+GDILW NY +AM LP++ F E+LW A E+Q+TYL KS +K GERRQS
Sbjct: 1088 FVKKKDIGDILWLNYKRAMHLPEDPIPF-EELWELAAREIQHTYLSKSTQMLKNGERRQS 1146
Query: 2701 PDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALS 2522
PDF E ILIFLKSQWVKKMEKLGA KIKPGQTIASFQQ AVMLYGTMARYMRR RD
Sbjct: 1147 PDFGEKDILIFLKSQWVKKMEKLGAPKIKPGQTIASFQQSAVMLYGTMARYMRRIRDIYM 1206
Query: 2521 PNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPE 2342
P +IMINCE+TP DLS W LNYW+F KPSYANDFTAFDQSQDGAMLQFEILKAK+ N+PE
Sbjct: 1207 PEHIMINCERTPTDLSYWALNYWNFDKPSYANDFTAFDQSQDGAMLQFEILKAKHHNIPE 1266
Query: 2341 WVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGD 2162
WV+EGYLDIKL +IFLGTLSIMRLTGE TFDANTECNIAYTHTRF+IPEG AQ
Sbjct: 1267 WVLEGYLDIKLDSRIFLGTLSIMRLTGEYQTFDANTECNIAYTHTRFDIPEGVAQ----- 1321
Query: 2161 DCAIAQVCPEKPSFALLKNRIALQ-----AKPAYTPQERGQWAEFCGYLITPKGLIKDPL 1997
D A+ C EKPSF L+++ ++L+ KP Q G+WAEFCGYLITPKGLIKDPL
Sbjct: 1322 DSAMDATCLEKPSFKLIESELSLKLYAGDCKPCLKAQIPGEWAEFCGYLITPKGLIKDPL 1381
Query: 1996 KLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRD 1817
KL AS LAK + K + N + NY+ D KLAY LGDDL +LL+P QA LHQVTVRD
Sbjct: 1382 KLAASFRLAKERGKR----ELDNCLENYARDMKLAYDLGDDLLELLTPEQAQLHQVTVRD 1437
Query: 1816 LVKFGGSPFL 1787
++K G S L
Sbjct: 1438 MIKLGASDIL 1447
Score = 243 bits (621), Expect = 2e-61
Identities = 120/232 (51%), Positives = 153/232 (65%), Gaps = 12/232 (5%)
Frame = -1
Query: 5353 LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT--APNQP---------- 5210
LYPQIYTL Y E GF+Y PGGHAGASY+H+Y QL WL VG + N P
Sbjct: 189 LYPQIYTLQYKEKGFIYTPGGHAGASYYHEYSQLGWLDVGLIEYFEENAPDGSEYLGTKW 248
Query: 5209 TITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIM 5030
+TAQR+ETKGANHLF+FQRG TP+ R+ T Y+TVP +FLP+K+N R P+ KTI
Sbjct: 249 AVTAQRIETKGANHLFVFQRGRLQTPQMRSIATNTQYITVPAVFLPKKFNSRQPLKKTIA 308
Query: 5029 MQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED 4850
QMF YIKSVK+ ERDI++K RQLI T ELQ Y P E+ LL NYF + L S E+
Sbjct: 309 QQMFLYIKSVKQVTERDIYSKLRQLIKTSELQEYSPDELVLLANYFMLISELSSKASAEE 368
Query: 4849 VLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTV 4694
VL+G+L ++L RP++S + + G+P F +L++AL W + L PVR V
Sbjct: 369 VLAGSLFKKLFRPIKSKVTAFIHKLFGQPEFAQLLEALLWTNVDLILPVRYV 420
>dbj|BAU45634.1| RNA-dependent RNA polymerase [Hydrangea ringspot virus]
Length = 1387
Score = 1033 bits (2672), Expect = 0.0
Identities = 532/848 (62%), Positives = 614/848 (72%), Gaps = 8/848 (0%)
Frame = -1
Query: 4306 PVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIAD-VRDLPKATLPEHWNEP 4130
PV++ LPW W P L LGF+A EIQ P VIMPI + V LP + + H
Sbjct: 544 PVSALEDALPWNKWTPILRGLGFQAREIQRSPHDNSVIMPITNIVSGLPISQIQGH---- 599
Query: 4129 GLSKVLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENV 3950
V+ L L+R PTPW P RAR++TSD+KN RTG L +E+ TWKETQT+ E +
Sbjct: 600 --DLVMKVLEKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESATWKETQTLKAERL 657
Query: 3949 TANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRT 3770
+ +SVIHG GGSGKS A Q LLRQ+P++ ++VVLPTNELRLDW+ K P PE+ +T
Sbjct: 658 EKTVGLSVIHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWMAKAPKVRPEKIKT 717
Query: 3769 FERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALIS 3590
+ERAF SPVV+FDDYGKLP GYIEA+ +ELVILTGD RQSTHHE NE+A+IS
Sbjct: 718 YERAFTGVSSPVVLFDDYGKLPAGYIEAYVAVQTRVELVILTGDARQSTHHENNEQAMIS 777
Query: 3589 KLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSL 3410
+LAPAT +F L RYYINATHRN + LANKL VYS K+T GFQP +HLLVPSL
Sbjct: 778 QLAPATEVFQPLCRYYINATHRNKRDLANKLEVYSEKEGETKITMGFQPIKDLHLLVPSL 837
Query: 3409 MKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSN 3230
+KK+A+ + GHKVSTYAGCQGITAP++QILLDNDT MC+KEVLYTALSRAV SIHF+N+
Sbjct: 838 LKKSAYGEMGHKVSTYAGCQGITAPKIQILLDNDTVMCSKEVLYTALSRAVHSIHFINTG 897
Query: 3229 AQSSAFWEKLEATPYLKTFLSLVREDKIEEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDF 3050
S+FWEKLEATPYLK FLS VRE+ I PVE+ + L +
Sbjct: 898 PTHSSFWEKLEATPYLKAFLSTVREEAIAAHQLPSADPRPDPEPKTHFPVENTSCALGAY 957
Query: 3049 KESLXXXXXXXXXXXXXX-------DDPTTQLFSHQQAKDEALLWETIKARLTISTPEAN 2891
E + +P QLF HQQAKDEALLWETIKARLTIS+PEAN
Sbjct: 958 MEKVPEKFEREIFTEDRGHTNCVQTQNPLVQLFPHQQAKDEALLWETIKARLTISSPEAN 1017
Query: 2890 IEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSINQIKGGER 2711
EEF KKD+GDILW +Y KAM LP+E FSEDLW A EVQNTYL K IN +K GER
Sbjct: 1018 WEEFYKKKDIGDILWLHYKKAMTLPEEPLPFSEDLWRLSAAEVQNTYLSKPINMLKNGER 1077
Query: 2710 RQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRD 2531
RQSPDF +HQIL+FLKSQWVKKMEKLG KIK GQTIASFQQHAVMLYGTMARYMRRFR+
Sbjct: 1078 RQSPDFEKHQILLFLKSQWVKKMEKLGGPKIKAGQTIASFQQHAVMLYGTMARYMRRFRE 1137
Query: 2530 ALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFN 2351
AL PN+I INCE TP DLSR++ NYWDF SYANDFTAFDQSQDGAMLQFEILKAK+FN
Sbjct: 1138 ALGPNHIKINCEATPNDLSRFIQNYWDFKPASYANDFTAFDQSQDGAMLQFEILKAKHFN 1197
Query: 2350 LPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIY 2171
+PE +I+GYLDIKL+ KIFLG L IMRLTGEGPTFDANTECNIAYTHTRF+IP GTAQ+Y
Sbjct: 1198 IPEEIIQGYLDIKLNAKIFLGVLGIMRLTGEGPTFDANTECNIAYTHTRFDIPPGTAQLY 1257
Query: 2170 AGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKL 1991
AGDD AIA V PE+PSF L+ +AL+AKP Y PQ G WAEFCGYLITPKGLIKDP KL
Sbjct: 1258 AGDDSAIACVPPERPSFKLIAKSLALEAKPVYAPQVAGAWAEFCGYLITPKGLIKDPAKL 1317
Query: 1990 HASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLV 1811
ASL+L +A +G K + NY D LAY+L D L ++LSP QA LHQ TVR LV
Sbjct: 1318 FASLKLLQA--TSGSKKELVEAAGNYERDVGLAYALKDSLYEILSPEQAELHQETVRTLV 1375
Query: 1810 KFGGSPFL 1787
K +L
Sbjct: 1376 KLTKGTYL 1383
Score = 246 bits (628), Expect = 3e-62
Identities = 117/222 (52%), Positives = 156/222 (70%)
Frame = -1
Query: 5353 LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGA 5174
L+P +YTL Y +D F+Y+PGGHAGASY H Y QL+WL VGH+ +P+ ITAQR+ETK A
Sbjct: 189 LHPLVYTLQYLKDHFIYLPGGHAGASYCHTYSQLQWLDVGHIVSPSGNCITAQRIETKAA 248
Query: 5173 NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKE 4994
NHLF+F RG TP R+F Y T+P IFLP ++N RTP +KT + QMF Y+KS+K+
Sbjct: 249 NHLFVFIRGRLNTPPMRSFAPMRAYCTLPAIFLPTEFNSRTPYTKTFLQQMFLYLKSIKK 308
Query: 4993 AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLR 4814
E D++AKFRQL T +LQ P EITL+VNYF + LDS TCF+D+LSG+ ++RLL+
Sbjct: 309 PTETDLYAKFRQLTKTDDLQELDPKEITLVVNYFLLISRLDSVTCFDDILSGSALRRLLK 368
Query: 4813 PLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNT 4688
PL ++++ Q GR FV+L+KAL+W IT V +T
Sbjct: 369 PLICWMEKMRQTIFGREEFVRLMKALEWTDITFTEQVMAYHT 410
>dbj|BAU45640.1| RNA-dependent RNA polymerase [Hydrangea ringspot virus]
Length = 1387
Score = 1033 bits (2671), Expect = 0.0
Identities = 532/856 (62%), Positives = 617/856 (72%), Gaps = 8/856 (0%)
Frame = -1
Query: 4330 QGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIAD-VRDLPKAT 4154
+G PV++ LPW W P L LGF+A EIQ P VIMPI + V LP +
Sbjct: 536 EGQKMITRPVSALEDALPWNKWTPILRGLGFQAREIQRSPHDNSVIMPITNIVSGLPISQ 595
Query: 4153 LPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKET 3974
+ H V+ L L+R PTPW P RAR++TSD+KN RTG L +E+ TWKET
Sbjct: 596 IQGH------DLVMRVLEKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESATWKET 649
Query: 3973 QTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPH 3794
QT+ E + + +SVIHG GGSGKS A Q LLRQ+P++ ++VVLPTNELRLDW+ K P
Sbjct: 650 QTLKAERLEKTVGLSVIHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWMAKAPK 709
Query: 3793 NPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHE 3614
PE+ +T+ERAF SPVV+FDDYGKLP GYIEA+ +ELVILTGD RQSTHHE
Sbjct: 710 VRPEKIKTYERAFTGVSSPVVLFDDYGKLPAGYIEAYVAVQTRVELVILTGDARQSTHHE 769
Query: 3613 ANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPG 3434
NE+A+IS+LAPAT +F L RYYINATHRN + LANKL VYS K+T GFQP
Sbjct: 770 NNEQAMISQLAPATEVFQPLCRYYINATHRNKRDLANKLEVYSEKEGETKITMGFQPIKD 829
Query: 3433 MHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVD 3254
+HLLVPSL+KK+A+ + GHKVSTYAGCQGITAP++QILLDNDT MC+KEVLYTALSRAV
Sbjct: 830 LHLLVPSLLKKSAYGEMGHKVSTYAGCQGITAPKIQILLDNDTVMCSKEVLYTALSRAVH 889
Query: 3253 SIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSXXXXXXXXXXXXXXXXPVED 3074
SIHF+N+ S+FWEKLEATPYLK FLS VRE+ I PVE+
Sbjct: 890 SIHFINTGPTHSSFWEKLEATPYLKAFLSTVREEAIAAHQLPSADPRPDPEPKTHFPVEN 949
Query: 3073 KTTTLDDFKESLXXXXXXXXXXXXXX-------DDPTTQLFSHQQAKDEALLWETIKARL 2915
+ L + E + +P QLF HQQAKDEALLWETIKARL
Sbjct: 950 TSCALGAYMEKVPEKFEREIFTEDRGHTNCVQTQNPLVQLFPHQQAKDEALLWETIKARL 1009
Query: 2914 TISTPEANIEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSI 2735
TIS+PEAN EEF KKD+GDILW +Y KAM LP+E FSEDLW A EVQNTYL K +
Sbjct: 1010 TISSPEANWEEFYKKKDIGDILWLHYKKAMTLPEEPLPFSEDLWRLSAAEVQNTYLSKPM 1069
Query: 2734 NQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMA 2555
N +K GERRQSPDF +HQIL+FLKSQWVKKMEKLG KIK GQTIASFQQHAVMLYGTMA
Sbjct: 1070 NMLKNGERRQSPDFEKHQILLFLKSQWVKKMEKLGGPKIKAGQTIASFQQHAVMLYGTMA 1129
Query: 2554 RYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFE 2375
RYMRRFR+AL PN+I INCE TP+DLSR++ NYWDF SYANDFTAFDQSQDGAMLQFE
Sbjct: 1130 RYMRRFREALGPNHIKINCEATPKDLSRFIQNYWDFKPASYANDFTAFDQSQDGAMLQFE 1189
Query: 2374 ILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEI 2195
ILKAK+FN+PE +I+GYLDIKL+ KIFLG L IMRLTGEGPTFDANTECNIAYTHTRF+I
Sbjct: 1190 ILKAKHFNIPEEIIQGYLDIKLNAKIFLGVLGIMRLTGEGPTFDANTECNIAYTHTRFDI 1249
Query: 2194 PEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKG 2015
P GTAQ+YAGDD AIA V PE+PSF L+ +AL+AKP Y PQ G WAEFCGYLITPKG
Sbjct: 1250 PPGTAQLYAGDDSAIACVPPERPSFKLIAKSLALEAKPVYAPQVAGAWAEFCGYLITPKG 1309
Query: 2014 LIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLH 1835
LIKDP KL ASL+L +A +G K + NY D LAY+L D L ++LSP QA LH
Sbjct: 1310 LIKDPAKLFASLKLLQA--TSGSKKELVEAAGNYERDVGLAYALKDSLYEILSPEQAELH 1367
Query: 1834 QVTVRDLVKFGGSPFL 1787
Q TVR LVK +L
Sbjct: 1368 QETVRTLVKLTKGTYL 1383
Score = 246 bits (628), Expect = 3e-62
Identities = 117/222 (52%), Positives = 156/222 (70%)
Frame = -1
Query: 5353 LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGA 5174
L+P +YTL Y +D F+Y+PGGHAGASY H Y QL+WL VGH+ +P+ ITAQR+ETK A
Sbjct: 189 LHPLVYTLQYLKDHFIYLPGGHAGASYCHTYSQLQWLDVGHIVSPSGNCITAQRIETKAA 248
Query: 5173 NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKE 4994
NHLF+F RG TP R+F Y T+P IFLP ++N RTP +KT + QMF Y+KS+K+
Sbjct: 249 NHLFVFIRGRLNTPPMRSFAPMRAYCTLPAIFLPTEFNSRTPYTKTFLQQMFLYLKSIKK 308
Query: 4993 AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLR 4814
E D++AKFRQL T +LQ P EITL+VNYF + LDS TCF+D+LSG+ ++RLL+
Sbjct: 309 PTETDLYAKFRQLTKTDDLQELDPKEITLVVNYFLLISRLDSVTCFDDILSGSALRRLLK 368
Query: 4813 PLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNT 4688
PL ++++ Q GR FV+L+KAL+W IT V +T
Sbjct: 369 PLICWMEKMRQTIFGREEFVRLMKALEWTDITFTEQVMAYHT 410
>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
Length = 1386
Score = 1031 bits (2666), Expect = 0.0
Identities = 531/856 (62%), Positives = 616/856 (71%), Gaps = 8/856 (0%)
Frame = -1
Query: 4330 QGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIAD-VRDLPKAT 4154
+G PV++ LPW W P L LGF+A EIQ P VIMPI + V LP +
Sbjct: 535 EGQKMITRPVSTLEDALPWNKWTPILRGLGFQAREIQRSPHDNSVIMPITNIVSGLPISQ 594
Query: 4153 LPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKET 3974
+ H V+ L L+R PTPW P RAR++TSD+KN RTG L +E+ TWKET
Sbjct: 595 IQGH------ELVMGVLEKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESATWKET 648
Query: 3973 QTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPH 3794
QT+ E + + +SVIHG GGSGKS A Q LLRQ+P++ ++VVLPTNELRLDW+ K P
Sbjct: 649 QTLKAERLEKTVGLSVIHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWMAKAPK 708
Query: 3793 NPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHE 3614
PE+ +T+ERAF SPVV+FDDYGKLP GYIEA+ +ELVILTGD RQSTHHE
Sbjct: 709 VRPEKIKTYERAFTGVSSPVVLFDDYGKLPAGYIEAYVAVQTRVELVILTGDARQSTHHE 768
Query: 3613 ANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPG 3434
NE+A+IS+LAPAT +F L RYYINATHRN + LANKL VYS K+T GFQP
Sbjct: 769 NNEQAMISQLAPATEVFQPLCRYYINATHRNKRDLANKLEVYSEKEGETKITMGFQPIKD 828
Query: 3433 MHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVD 3254
+HLLVPSL+KK+A+ + GHKVSTYAGCQGITAP++QILLDNDT MC+KEVLYTALSRAV
Sbjct: 829 LHLLVPSLLKKSAYGEMGHKVSTYAGCQGITAPKIQILLDNDTVMCSKEVLYTALSRAVH 888
Query: 3253 SIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSXXXXXXXXXXXXXXXXPVED 3074
SIHF+N+ S+FWEKLEATPYLK FLS VRE+ I PVE+
Sbjct: 889 SIHFINTGPTHSSFWEKLEATPYLKAFLSTVREEAIAAHQLPNADPRPDPEPKTHFPVEN 948
Query: 3073 KTTTLDDFKESLXXXXXXXXXXXXXX-------DDPTTQLFSHQQAKDEALLWETIKARL 2915
+ L + E + +P QLF HQQAKDEALLWETIKARL
Sbjct: 949 TSCALGAYMEKVPEKFEREIFTEDRGHTNCVQTQNPLVQLFPHQQAKDEALLWETIKARL 1008
Query: 2914 TISTPEANIEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSI 2735
TIS+PEAN EEF KKD+GDILW +Y KAM LP+E FSEDLW A EVQNTYL K +
Sbjct: 1009 TISSPEANWEEFYRKKDIGDILWLHYKKAMTLPEEPLPFSEDLWRLSAAEVQNTYLSKPM 1068
Query: 2734 NQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMA 2555
N +K GERRQSPDF +HQIL+FLKSQWVKKMEKLG KIK GQTIASFQQHAVMLYGTMA
Sbjct: 1069 NMLKNGERRQSPDFEKHQILLFLKSQWVKKMEKLGGPKIKAGQTIASFQQHAVMLYGTMA 1128
Query: 2554 RYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFE 2375
RYMRRFR+ L PN+I INCE TP+DLSR++ NYWDF SYANDFTAFDQSQDGAMLQFE
Sbjct: 1129 RYMRRFREVLGPNHIKINCEATPKDLSRFIQNYWDFKPASYANDFTAFDQSQDGAMLQFE 1188
Query: 2374 ILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEI 2195
ILKAK+FN+PE +I+GYLDIKL+ KIFLG L IMRLTGEGPTFDANTECNIAYTHTRF+I
Sbjct: 1189 ILKAKHFNIPEEIIQGYLDIKLNAKIFLGVLGIMRLTGEGPTFDANTECNIAYTHTRFDI 1248
Query: 2194 PEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKG 2015
P GTAQ+YAGDD AIA V PE+PSF L+ +AL+AKP Y PQ G WAEFCGYLITPKG
Sbjct: 1249 PPGTAQLYAGDDSAIACVPPERPSFKLIAKSLALEAKPVYAPQVAGAWAEFCGYLITPKG 1308
Query: 2014 LIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLH 1835
LIKDP KL ASL+L +A +G K + NY D LAY+L D L ++LSP QA LH
Sbjct: 1309 LIKDPAKLFASLKLLQA--TSGSKKELVEAAGNYERDVGLAYALKDSLYEILSPEQAELH 1366
Query: 1834 QVTVRDLVKFGGSPFL 1787
Q TVR LVK +L
Sbjct: 1367 QETVRTLVKLTKGTYL 1382
Score = 206 bits (523), Expect = 8e-50
Identities = 106/225 (47%), Positives = 143/225 (63%), Gaps = 3/225 (1%)
Frame = -1
Query: 5353 LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGA 5174
L+P +YTL Y +D F+Y+PGGHAGASY H Y QL+WL VGH+ +P+ ITAQR+ETK A
Sbjct: 189 LHPLVYTLQYLKDHFIYLPGGHAGASYCHTYSQLQWLDVGHIVSPSGNCITAQRIETKAA 248
Query: 5173 NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKE 4994
NHLF+F RG TP R+F Y T+P IFLP ++N RTP +KT + QMF Y+KS+K+
Sbjct: 249 NHLFVFIRGRLNTPPMRSFAPMRAYCTLPAIFLPTEFNSRTPYTKTFLQQMFLYLKSIKK 308
Query: 4993 AKERDIWAKFRQLISTKELQHYQPSEI---TLLVNYFEFTASLDSHTCFEDVLSGNLIQR 4823
E D++AKFRQL T +LQ P LL + E S +LSG+ ++R
Sbjct: 309 PTETDLYAKFRQLTKTDDLQELDPKRSHYGELLPPHLEARFS----HLLRCILSGSALRR 364
Query: 4822 LLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNT 4688
LL+PL ++++ Q GR FV+L+KAL+W IT V +T
Sbjct: 365 LLKPLICWMEKMRQTIFGREEFVRLMKALEWTDITFTEQVMAYHT 409
>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|56792005|gb|AAW30448.1|
viral replicase [Hydrangea ringspot virus]
Length = 1386
Score = 1028 bits (2657), Expect = 0.0
Identities = 530/856 (61%), Positives = 615/856 (71%), Gaps = 8/856 (0%)
Frame = -1
Query: 4330 QGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIAD-VRDLPKAT 4154
+G PV++ LPW W P L LGF+A EIQ P VIMPI + V LP +
Sbjct: 535 EGQKMITRPVSALENALPWNKWTPILRGLGFQAREIQRSPHDNSVIMPITNIVSGLPISQ 594
Query: 4153 LPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKET 3974
+ H V+ L L+R PTPW P RAR++TSD+KN RTG L +E+ TWKET
Sbjct: 595 IQGH------ELVMGVLEKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESATWKET 648
Query: 3973 QTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPH 3794
QT+ E + + +SVIHG GGSGKS A Q LLRQ+P++ ++VVLPTNELRLDW+ K P
Sbjct: 649 QTLKAERLEKTVGLSVIHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWMAKAPK 708
Query: 3793 NPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHE 3614
PE+ +T+ERAF SPVV+FDDYGKLP GYIEA+ +ELVILTGD RQSTHHE
Sbjct: 709 VRPEKIKTYERAFTGVSSPVVLFDDYGKLPAGYIEAYVAVQTRVELVILTGDARQSTHHE 768
Query: 3613 ANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPG 3434
NE+A+IS+LAPAT +F L RYYINATHRN + LANKL VYS K+T GFQP
Sbjct: 769 NNEQAMISQLAPATEVFQPLCRYYINATHRNKRDLANKLEVYSEKEGETKITMGFQPIKD 828
Query: 3433 MHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVD 3254
+HLLVPSL+KK+A+ + GHKVSTYAGCQGITAP++QILLDNDT MC+KEVLYTALSRAV
Sbjct: 829 LHLLVPSLLKKSAYGEMGHKVSTYAGCQGITAPKIQILLDNDTVMCSKEVLYTALSRAVH 888
Query: 3253 SIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSXXXXXXXXXXXXXXXXPVED 3074
SIHF+N+ S+FWEKLEATPYLK FLS VRE+ I PVE+
Sbjct: 889 SIHFINTGPTHSSFWEKLEATPYLKAFLSTVREEAIAAHQLPSADPRPDPEPKTHFPVEN 948
Query: 3073 KTTTLDDFKESLXXXXXXXXXXXXXX-------DDPTTQLFSHQQAKDEALLWETIKARL 2915
+ L + E + +P QLF HQQAKDEALLWETIKARL
Sbjct: 949 TSCALGAYMEKVPEKFEREIFTEDRGHTNCVQTQNPLVQLFPHQQAKDEALLWETIKARL 1008
Query: 2914 TISTPEANIEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSI 2735
TIS+PEAN EEF KKD+GDILW +Y KAM LP+E FSEDLW A EVQNTYL K +
Sbjct: 1009 TISSPEANWEEFYKKKDIGDILWLHYKKAMTLPEEPLPFSEDLWRLSAAEVQNTYLSKPM 1068
Query: 2734 NQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMA 2555
N +K GERRQSPDF +HQIL+FLKSQWVKKMEKLG KIK GQTIASFQQHAVMLYGTMA
Sbjct: 1069 NMLKNGERRQSPDFEKHQILLFLKSQWVKKMEKLGGPKIKAGQTIASFQQHAVMLYGTMA 1128
Query: 2554 RYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFE 2375
RYMRRFR+AL PN+I INCE TP+DLSR++ NYWDF SYANDFTAFDQSQD AMLQFE
Sbjct: 1129 RYMRRFREALGPNHIKINCEATPKDLSRFIQNYWDFKPASYANDFTAFDQSQDAAMLQFE 1188
Query: 2374 ILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEI 2195
ILKAK+FN+P +I+GYLDIKL+ KIFLG L IMRLTGEGPTFDANTECNIAYTHTRF+I
Sbjct: 1189 ILKAKHFNIPGEIIQGYLDIKLNAKIFLGVLGIMRLTGEGPTFDANTECNIAYTHTRFDI 1248
Query: 2194 PEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKG 2015
P GTAQ+YAGDD AIA V PE+PSF L+ +AL+AKP Y PQ G WAEFCGYLITPKG
Sbjct: 1249 PPGTAQLYAGDDSAIACVPPERPSFKLIAKSLALEAKPVYAPQVAGAWAEFCGYLITPKG 1308
Query: 2014 LIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLH 1835
LIKDP KL ASL+L +A +G K + NY D LAY+L D L ++LSP QA LH
Sbjct: 1309 LIKDPAKLFASLKLLQA--TSGSKKELVEAAGNYERDVGLAYALKDSLYEILSPEQAELH 1366
Query: 1834 QVTVRDLVKFGGSPFL 1787
Q TVR LVK +L
Sbjct: 1367 QETVRTLVKLTKGAYL 1382
Score = 206 bits (523), Expect = 8e-50
Identities = 106/225 (47%), Positives = 143/225 (63%), Gaps = 3/225 (1%)
Frame = -1
Query: 5353 LYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGA 5174
L+P +YTL Y +D F+Y+PGGHAGASY H Y QL+WL VGH+ +P+ ITAQR+ETK A
Sbjct: 189 LHPLVYTLQYLKDHFIYLPGGHAGASYCHTYSQLQWLDVGHIVSPSGNCITAQRIETKAA 248
Query: 5173 NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKE 4994
NHLF+F RG TP R+F Y T+P IFLP ++N RTP +KT + QMF Y+KS+K+
Sbjct: 249 NHLFVFIRGRLNTPPMRSFAPMRAYCTLPAIFLPTEFNSRTPYTKTFLQQMFLYLKSIKK 308
Query: 4993 AKERDIWAKFRQLISTKELQHYQPSEI---TLLVNYFEFTASLDSHTCFEDVLSGNLIQR 4823
E D++AKFRQL T +LQ P LL + E S +LSG+ ++R
Sbjct: 309 PTETDLYAKFRQLTKTDDLQELDPKRSHYGELLPPHLEARFS----HLLRCILSGSALRR 364
Query: 4822 LLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNT 4688
LL+PL ++++ Q GR FV+L+KAL+W IT V +T
Sbjct: 365 LLKPLICWMEKMRQTIFGREEFVRLMKALEWTDITFTEQVMAYHT 409
>ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|ACN58194.1| replicase
[Allium virus X]
Length = 1701
Score = 920 bits (2377), Expect = 0.0
Identities = 479/864 (55%), Positives = 591/864 (68%), Gaps = 8/864 (0%)
Frame = -1
Query: 4354 TQASASLNQGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPST-GEVIMPIAD 4178
T+ S G H P N P LPW W+PKLNALGF L +DP ++I PI
Sbjct: 846 TETSVRDASGFHVAPPPENPAPP-LPWEQWIPKLNALGFSGLARISDPQDKDQLICPITC 904
Query: 4177 VRDLPKATLPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHR 3998
++ LPE + + +LTT+ +R P + + +RA+A+ SDV+NSRTG L
Sbjct: 905 IKSGFGIFLPEDTDTKPFTDLLTTM---HRMPCAYKVNNSRAKAYASDVENSRTGLLLRS 961
Query: 3997 ETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRL 3818
+ WKE TM E +A+SVIHGAGGSGKS ALQ L+R+NPEL VV PTNELRL
Sbjct: 962 QPDHWKEALTMQAETADHTIALSVIHGAGGSGKSHALQQLIRENPELNFLVVCPTNELRL 1021
Query: 3817 DWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGD 3638
DWL KLP + +TFE+A S + +IF DY KLP GYIE + + L ILTGD
Sbjct: 1022 DWLAKLPKVELHRIKTFEKALADSTAATIIFGDYSKLPAGYIECYLAARPTATLAILTGD 1081
Query: 3637 PRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVT 3458
PRQS++HE+NE A+IS+LAP+T+ F + RYYINATHRN + LA LGVYS + ++
Sbjct: 1082 PRQSSYHESNEGAMISQLAPSTSEFGQYCRYYINATHRNKQDLARMLGVYSERTGLTSIS 1141
Query: 3457 YGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLY 3278
+P HLLVPS++KK + + G+K STYAGCQGITAPR+QILLD DTT+C EVLY
Sbjct: 1142 MSSRPLTDTHLLVPSIIKKRTYMELGYKTSTYAGCQGITAPRLQILLDCDTTLCADEVLY 1201
Query: 3277 TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSXXXXXXXXXXXX 3098
TALSRAV IHF+N+ A S AFW+KL ATPYLKTFL RE++++E
Sbjct: 1202 TALSRAVHGIHFINTGATSGAFWDKLNATPYLKTFLDFTREERLKESQPREQEPTEPEGP 1261
Query: 3097 XXXXPVEDKTTTLDDFKESLXXXXXXXXXXXXXX-------DDPTTQLFSHQQAKDEALL 2939
PVE++ L++ E L +D QLFSHQQAKD+ALL
Sbjct: 1262 TTHFPVENEKFVLEEQVEELLEKHDREILRPDHGHTNCVQTEDAVIQLFSHQQAKDQALL 1321
Query: 2938 WETIKARLTISTPEANIEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQ 2759
W TI+ARL IS P+ANI EF AKK++GD+L+ +YH+AMKLP + F EDLW CA+EVQ
Sbjct: 1322 WATIEARLKISNPKANIAEFNAKKEIGDVLFEHYHQAMKLPDKPIPFMEDLWVACAQEVQ 1381
Query: 2758 NTYLKKSINQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHA 2579
TYL K IN +K GE RQSPDF ++ I +FLKSQWVKKMEKLGA KIKPGQTIASFQQ A
Sbjct: 1382 GTYLSKPINMLKNGEYRQSPDFDKNTIALFLKSQWVKKMEKLGAPKIKPGQTIASFQQSA 1441
Query: 2578 VMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQ 2399
VMLYGTMARYMRR R+A P IMINCEK PQ LS W+ NYW F+ +YANDFT FDQSQ
Sbjct: 1442 VMLYGTMARYMRRMREAFQPPEIMINCEKDPQTLSHWIQNYWKFNSYAYANDFTQFDQSQ 1501
Query: 2398 DGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIA 2219
DGAMLQFEILKAK+ ++PEWV+EGYLDIK + K+F G LSIMRLTGEGPTFDANTECNIA
Sbjct: 1502 DGAMLQFEILKAKHHSIPEWVLEGYLDIKTNAKVFSGVLSIMRLTGEGPTFDANTECNIA 1561
Query: 2218 YTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFC 2039
YTH RF++P+GTAQ+YAGDD A++ + PE+PSFA K ++ L +KPA Q+RG WAEFC
Sbjct: 1562 YTHLRFDVPKGTAQLYAGDDSALSCLPPERPSFADFKQQLTLTSKPALFAQKRGFWAEFC 1621
Query: 2038 GYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLL 1859
GYLITP G++KDP KL A++ LA+ Q K + +++LD KLAY D L ++L
Sbjct: 1622 GYLITPLGIMKDPAKLAATVVLAQKQNK------LHECWRSHALDLKLAYVHRDALTEVL 1675
Query: 1858 SPRQAHLHQVTVRDLVKFGGSPFL 1787
S +Q LHQ+TVR LVK G S L
Sbjct: 1676 SEKQQELHQLTVRTLVKSGASEIL 1699
Score = 236 bits (601), Expect = 7e-59
Identities = 117/222 (52%), Positives = 151/222 (68%), Gaps = 1/222 (0%)
Frame = -1
Query: 5353 LYPQIYTLTY-SEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKG 5177
L+P +YTL+Y E F+Y PGGH GA Y H + QL+WL VG + NQ ITAQR+E+K
Sbjct: 187 LHPNVYTLSYFGEHNFIYAPGGHHGAEYVHDFKQLDWLRVGRVRYKNQ-IITAQRIESKA 245
Query: 5176 ANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVK 4997
ANHLF+FQRGN TP R F T + YVT+P IFLP+K+N R PI KT++MQ+F Y+K V
Sbjct: 246 ANHLFVFQRGNLNTPPLRGFGTCKKYVTLPRIFLPKKFNTRVPIEKTLVMQIFTYVKGVA 305
Query: 4996 EAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLL 4817
+ ERDI+AK RQLI T +LQ + SE+ +VNYF F A DS TCF D+LSG+L ++L
Sbjct: 306 KVTERDIYAKVRQLIKTDQLQGFDASELVHIVNYFCFIAKQDSMTCFSDILSGSLFKKLF 365
Query: 4816 RPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVN 4691
+PL + + F G P F KL+KAL WQ IT+ V +N
Sbjct: 366 QPLAAFLAECKHFIFGEPDFKKLLKALQWQDITMVVTVADIN 407