BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia27_contig00008334
         (2238 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP69041.1| Retrovirus-related Pol polyprotein from transposo...   992   0.0  
gb|KYP44533.1| Retrovirus-related Pol polyprotein from transposo...   992   0.0  
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi...   983   0.0  
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal...   981   0.0  
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]         981   0.0  
gb|KYP66220.1| Retrovirus-related Pol polyprotein from transposo...   978   0.0  
emb|CAB75469.1| copia-type reverse transcriptase-like protein [A...   978   0.0  
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi...   976   0.0  
ref|XP_013688817.1| PREDICTED: uncharacterized protein LOC106392...   965   0.0  
gb|KYP66219.1| Retrovirus-related Pol polyprotein from transposo...   754   0.0  
gb|AIC77183.1| polyprotein [Gossypium barbadense]                     713   0.0  
gb|AGW47867.1| polyprotein [Phaseolus vulgaris]                       697   0.0  
gb|KYP39674.1| Retrovirus-related Pol polyprotein from transposo...   661   0.0  
gb|AAF16534.1|AC013482_8 T26F17.17 [Arabidopsis thaliana]             645   0.0  
gb|KYP60019.1| Retrovirus-related Pol polyprotein from transposo...   595   0.0  
gb|KYP32069.1| Retrovirus-related Pol polyprotein from transposo...   578   0.0  
gb|ACN78973.1| copia-type polyprotein [Glycine max] gi|225016157...   567   0.0  
emb|CAN74303.1| hypothetical protein VITISV_032980 [Vitis vinifera]   546   e-175
emb|CAN71445.1| hypothetical protein VITISV_042489 [Vitis vinifera]   538   e-173
gb|KYP64949.1| Retrovirus-related Pol polyprotein from transposo...   504   e-163

>gb|KYP69041.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1342

 Score =  992 bits (2564), Expect = 0.0
 Identities = 506/735 (68%), Positives = 579/735 (78%), Gaps = 3/735 (0%)
 Frame = -2

Query: 2204 FQVPQLKGNDFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXX 2025
            FQVP L  ++++NWS++M ALLGAHDVWEVVEKG+ E ++  +LS  +            
Sbjct: 8    FQVPMLTKSNYDNWSLRMVALLGAHDVWEVVEKGHTEPENVESLSQAQKDSLRDSRKRDK 67

Query: 2024 KALFLIYQALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKE 1845
            KAL LIYQ LD+D FEKIS   +AK+ W+KL++SYKG ++VKKVRLQTLR EF++L MKE
Sbjct: 68   KALCLIYQGLDEDTFEKISGVKTAKEAWEKLKISYKGADQVKKVRLQTLRGEFEALHMKE 127

Query: 1844 GELVSDYFSRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTI 1665
            GELVSDYFSRVLTV+N LKRNGEKL+DV IMEKILRSLD  F+ I TI EETKDLE M+I
Sbjct: 128  GELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKILRSLDPKFEHIVTITEETKDLEAMSI 187

Query: 1664 EQLLGSLQAHEEKKKKKG-VADQLLKTEVQPTKNEENFHXXXXXXXXXXXXXXXXXXXXX 1488
            EQLLGSLQA+EEKKKKK  + +Q+ K  V   K EEN H                     
Sbjct: 188  EQLLGSLQAYEEKKKKKEEIVEQVFKAHVDSRK-EENAHNQSRRSYSQEQGRGRAYGHGQ 246

Query: 1487 XXXXXXXXXXNYMQXXXXXXXXXXXXXXXRYDKSQVQCYNCQKFGHYARDCRNPN-TRVN 1311
                         +               RYDKS+++CYNC KFGHYA +CR PN  +V 
Sbjct: 247  GRRPNNNN----QRGESSNRGRGRGNPNSRYDKSRIKCYNCNKFGHYASECRAPNKNKVE 302

Query: 1310 ERANLVEEK-KEDGANVLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVELDESVSGN 1134
            E+AN  EE+ +EDG   LLLA     +G+D+ WYLD+GASNHMCG+R+MFVELDESV GN
Sbjct: 303  EKANYAEERCQEDGT--LLLAYKGQDKGEDNQWYLDSGASNHMCGKRSMFVELDESVKGN 360

Query: 1133 VSFGDDSKVAVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDIHLKDN 954
            V+FGD+SKVAV+GKG +LIRLK+G HQFISNVYYVP+MK+NILSLGQLLEKGYDI LK+N
Sbjct: 361  VAFGDESKVAVEGKGNVLIRLKNGEHQFISNVYYVPSMKSNILSLGQLLEKGYDIQLKNN 420

Query: 953  NLSIRDNMNNLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFGGLEL 774
            NLSIRDN +  IA+VPM+RNRMF+LNIQ+D  +CLKMCYKD SWLWHLRFGHLNF GLEL
Sbjct: 421  NLSIRDNTSRFIAKVPMTRNRMFVLNIQSDGPQCLKMCYKDQSWLWHLRFGHLNFKGLEL 480

Query: 773  LSKKNMVRGLPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPIKPNS 594
            LSKK MVRGLPCI+HP+Q+CEGCLLGKQFR SFPKES+SR+QKPLELIH DVCGPIKP S
Sbjct: 481  LSKKAMVRGLPCITHPNQVCEGCLLGKQFRLSFPKESDSRAQKPLELIHTDVCGPIKPRS 540

Query: 593  FGKSNYFLLFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXESGLHIKAMRTDRGGEFT 414
             GKSNYFLLFIDDFSRKTWVYFLK+KS               ESGL IKA+R+DRGGEFT
Sbjct: 541  LGKSNYFLLFIDDFSRKTWVYFLKEKSEVFENFKKFKAHVEKESGLLIKALRSDRGGEFT 600

Query: 413  SKEFQEFCEANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAEAVAC 234
            SKEFQ++CE NGIRR LTVPRSPQQNGVAERKNRTIL M RSMLKSKK+PKEFWAEAVAC
Sbjct: 601  SKEFQKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKKLPKEFWAEAVAC 660

Query: 233  AVYLSNRSPTRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSEKFIF 54
            AVYL+NRSPTRSV GKTPQEAW+GRKPGISHLRVFGSIAHVHVPDE+RSKLDDKSEK+IF
Sbjct: 661  AVYLTNRSPTRSVSGKTPQEAWSGRKPGISHLRVFGSIAHVHVPDEKRSKLDDKSEKYIF 720

Query: 53   IGYDNNSKGYKLYNP 9
            IGYD NSKGYKLYNP
Sbjct: 721  IGYDANSKGYKLYNP 735


>gb|KYP44533.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1342

 Score =  992 bits (2564), Expect = 0.0
 Identities = 506/735 (68%), Positives = 579/735 (78%), Gaps = 3/735 (0%)
 Frame = -2

Query: 2204 FQVPQLKGNDFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXX 2025
            FQVP L  ++++NWS++M ALLGAHDVWEVVEKG+ E ++  +LS  +            
Sbjct: 8    FQVPMLTKSNYDNWSLRMVALLGAHDVWEVVEKGHTEPENVESLSQAQKDSLRDSRKRDK 67

Query: 2024 KALFLIYQALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKE 1845
            KAL LIYQ LD+D FEKIS   +AK+ W+KL++SYKG ++VKKVRLQTLR EF++L MKE
Sbjct: 68   KALCLIYQGLDEDTFEKISGVKTAKEAWEKLKISYKGADQVKKVRLQTLRGEFEALHMKE 127

Query: 1844 GELVSDYFSRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTI 1665
            GELVSDYFSRVLTV+N LKRNGEKL+DV IMEKILRSLD  F+ I TI EETKDLE M+I
Sbjct: 128  GELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKILRSLDPKFEHIVTITEETKDLEAMSI 187

Query: 1664 EQLLGSLQAHEEKKKKKG-VADQLLKTEVQPTKNEENFHXXXXXXXXXXXXXXXXXXXXX 1488
            EQLLGSLQA+EEKKKKK  + +Q+ K  V   K EEN H                     
Sbjct: 188  EQLLGSLQAYEEKKKKKEEIVEQVFKAHVDSRK-EENAHNQSRRSYSQEQGRGRAYGHGQ 246

Query: 1487 XXXXXXXXXXNYMQXXXXXXXXXXXXXXXRYDKSQVQCYNCQKFGHYARDCRNPN-TRVN 1311
                         +               RYDKS+++CYNC KFGHYA +CR PN  +V 
Sbjct: 247  GRRPNNNN----QRGESSNRGRGRGNPNSRYDKSRIKCYNCNKFGHYASECRAPNKNKVE 302

Query: 1310 ERANLVEEK-KEDGANVLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVELDESVSGN 1134
            E+AN  EE+ +EDG   LLLA     +G+D+ WYLD+GASNHMCG+R+MFVELDESV GN
Sbjct: 303  EKANYAEERCQEDGT--LLLAYKGQDKGEDNQWYLDSGASNHMCGKRSMFVELDESVKGN 360

Query: 1133 VSFGDDSKVAVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDIHLKDN 954
            V+FGD+SKVAV+GKG +LIRLK+G HQFISNVYYVP+MK+NILSLGQLLEKGYDI LK+N
Sbjct: 361  VAFGDESKVAVEGKGNVLIRLKNGEHQFISNVYYVPSMKSNILSLGQLLEKGYDIQLKNN 420

Query: 953  NLSIRDNMNNLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFGGLEL 774
            NLSIRDN +  IA+VPM+RNRMF+LNIQ+D  +CLKMCYKD SWLWHLRFGHLNF GLEL
Sbjct: 421  NLSIRDNTSRFIAKVPMTRNRMFVLNIQSDGPQCLKMCYKDQSWLWHLRFGHLNFKGLEL 480

Query: 773  LSKKNMVRGLPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPIKPNS 594
            LSKK MVRGLPCI+HP+Q+CEGCLLGKQFR SFPKES+SR+QKPLELIH DVCGPIKP S
Sbjct: 481  LSKKAMVRGLPCITHPNQVCEGCLLGKQFRLSFPKESDSRAQKPLELIHTDVCGPIKPRS 540

Query: 593  FGKSNYFLLFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXESGLHIKAMRTDRGGEFT 414
             GKSNYFLLFIDDFSRKTWVYFLK+KS               ESGL IKA+R+DRGGEFT
Sbjct: 541  LGKSNYFLLFIDDFSRKTWVYFLKEKSEVFENFKKFKAHVEKESGLLIKALRSDRGGEFT 600

Query: 413  SKEFQEFCEANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAEAVAC 234
            SKEFQ++CE NGIRR LTVPRSPQQNGVAERKNRTIL M RSMLKSKK+PKEFWAEAVAC
Sbjct: 601  SKEFQKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKKLPKEFWAEAVAC 660

Query: 233  AVYLSNRSPTRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSEKFIF 54
            AVYL+NRSPTRSV GKTPQEAW+GRKPGISHLRVFGSIAHVHVPDE+RSKLDDKSEK+IF
Sbjct: 661  AVYLTNRSPTRSVSGKTPQEAWSGRKPGISHLRVFGSIAHVHVPDEKRSKLDDKSEKYIF 720

Query: 53   IGYDNNSKGYKLYNP 9
            IGYD NSKGYKLYNP
Sbjct: 721  IGYDANSKGYKLYNP 735


>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
            gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
            polyprotein, putative [Arabidopsis thaliana]
          Length = 1320

 Score =  983 bits (2541), Expect = 0.0
 Identities = 489/734 (66%), Positives = 576/734 (78%), Gaps = 2/734 (0%)
 Frame = -2

Query: 2204 FQVPQLKGNDFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXX 2025
            FQVP L  ++++NWS++MKA+LGAHDVWE+VEKG+ E ++E +LS T+            
Sbjct: 8    FQVPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDK 67

Query: 2024 KALFLIYQALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKE 1845
            KAL LIYQ LD+D FEK+  ATSAK+ W+KL+ SYKG ++VKKVRLQTLR EF++LQMKE
Sbjct: 68   KALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKE 127

Query: 1844 GELVSDYFSRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTI 1665
            GELVSDYFSRVLTV+N LKRNGEKL+DV IMEK+LRSLD  F+ I T+IEETKDLE MTI
Sbjct: 128  GELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTI 187

Query: 1664 EQLLGSLQAHEEKKKKK-GVADQLLKTEVQPTKNEENFHXXXXXXXXXXXXXXXXXXXXX 1488
            EQLLGSLQA+EEKKKKK  + +Q+L  ++   +N +++                      
Sbjct: 188  EQLLGSLQAYEEKKKKKEDIVEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRGW 247

Query: 1487 XXXXXXXXXXNYMQXXXXXXXXXXXXXXXRYDKSQVQCYNCQKFGHYARDCRNP-NTRVN 1311
                         +               RYDKS V+CYNC KFGHYA +C+ P N +  
Sbjct: 248  RPHEDNTN----QRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFE 303

Query: 1310 ERANLVEEKKEDGANVLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVELDESVSGNV 1131
            E+AN VEEK ++   +L+ +   + + ++  WYLD+GASNHMCGR++MF ELDESV GNV
Sbjct: 304  EKANYVEEKIQEEDMLLMASYKKDEQEENHKWYLDSGASNHMCGRKSMFAELDESVRGNV 363

Query: 1130 SFGDDSKVAVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDIHLKDNN 951
            + GD+SK+ VKGKG ILIRLK+G HQFISNVYY+P+MKTNILSLGQLLEKGYDI LKDNN
Sbjct: 364  ALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNN 423

Query: 950  LSIRDNMNNLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFGGLELL 771
            LSIRD  +NLI +VPMS+NRMF+LNI+ D+A+CLKMCYK+ SWLWHLRFGHLNFGGLELL
Sbjct: 424  LSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELL 483

Query: 770  SKKNMVRGLPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPIKPNSF 591
            S+K MVRGLPCI+HP+Q+CEGCLLGKQF+ SFPKES+SR+QKPLELIH DVCGPIKP S 
Sbjct: 484  SRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSL 543

Query: 590  GKSNYFLLFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXESGLHIKAMRTDRGGEFTS 411
            GKSNYFLLFIDDFSRKTWVYFLK+KS               ESGL IK MR+DRGGEFTS
Sbjct: 544  GKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTS 603

Query: 410  KEFQEFCEANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAEAVACA 231
            KEF ++CE NGIRR LTVPRSPQQNGVAERKNRTIL M RSMLKSK++PKE WAEAVACA
Sbjct: 604  KEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACA 663

Query: 230  VYLSNRSPTRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSEKFIFI 51
            VYL NRSPT+SV GKTPQEAW+GRKPG+SHLRVFGSIAH HVPDE+RSKLDDKSEK+IFI
Sbjct: 664  VYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFI 723

Query: 50   GYDNNSKGYKLYNP 9
            GYDNNSKGYKLYNP
Sbjct: 724  GYDNNSKGYKLYNP 737


>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
          Length = 1352

 Score =  981 bits (2537), Expect = 0.0
 Identities = 488/734 (66%), Positives = 575/734 (78%), Gaps = 2/734 (0%)
 Frame = -2

Query: 2204 FQVPQLKGNDFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXX 2025
            FQVP L  ++++NWS++MKA+LGAHDVWE+VEKG+ E ++E +LS T+            
Sbjct: 8    FQVPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDK 67

Query: 2024 KALFLIYQALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKE 1845
            KAL LIYQ LD+D FEK+  ATSAK+ W+KL+ SYKG ++VKKVRLQTLR EF++LQMKE
Sbjct: 68   KALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKE 127

Query: 1844 GELVSDYFSRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTI 1665
            GELVSDYFSRVLTV+N LKRNGEKL+DV IMEK+LRSLD  F+ I T+IEETKDLE MTI
Sbjct: 128  GELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTI 187

Query: 1664 EQLLGSLQAHEEKKKKK-GVADQLLKTEVQPTKNEENFHXXXXXXXXXXXXXXXXXXXXX 1488
            EQLLGSLQA+EEKKKKK  + +Q+L  ++   +N +++                      
Sbjct: 188  EQLLGSLQAYEEKKKKKEDIVEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRGW 247

Query: 1487 XXXXXXXXXXNYMQXXXXXXXXXXXXXXXRYDKSQVQCYNCQKFGHYARDCRNP-NTRVN 1311
                         +               RYDKS V+CYNC KFGHYA +C+ P N +  
Sbjct: 248  RPHEDNTN----QRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFE 303

Query: 1310 ERANLVEEKKEDGANVLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVELDESVSGNV 1131
            E+AN VEEK ++   +L+ +   + + ++  WYLD+GASNHMCGR++MF ELDESV GNV
Sbjct: 304  EKANYVEEKIQEEDMLLMASYKKDEQKENHKWYLDSGASNHMCGRKSMFAELDESVRGNV 363

Query: 1130 SFGDDSKVAVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDIHLKDNN 951
            + GD+SK+ VKGKG ILIRLK+G HQFISNVYY+P+MKTNILSLGQLLEKGYDI LKDNN
Sbjct: 364  ALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNN 423

Query: 950  LSIRDNMNNLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFGGLELL 771
            LSIRD  +NLI +VPMS+NRMF+LNI+ D+A+CLKMCYK+ SWLWHLRFGHLNFGGLELL
Sbjct: 424  LSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELL 483

Query: 770  SKKNMVRGLPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPIKPNSF 591
            S+K MVRGLPCI+HP+Q+CEGCLLGKQF+ SFPKES+SR+QKPLELIH DVCGPIKP S 
Sbjct: 484  SRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSL 543

Query: 590  GKSNYFLLFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXESGLHIKAMRTDRGGEFTS 411
            GKSNYFLLFIDDFSRKTWVYFLK+KS               ESGL IK MR+DRGGEFTS
Sbjct: 544  GKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTS 603

Query: 410  KEFQEFCEANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAEAVACA 231
            KEF ++CE NGIRR LTVPRSPQQNGV ERKNRTIL M RSMLKSK++PKE WAEAVACA
Sbjct: 604  KEFLKYCEDNGIRRQLTVPRSPQQNGVVERKNRTILEMARSMLKSKRLPKELWAEAVACA 663

Query: 230  VYLSNRSPTRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSEKFIFI 51
            VYL NRSPT+SV GKTPQEAW+GRKPG+SHLRVFGSIAH HVPDE+RSKLDDKSEK+IFI
Sbjct: 664  VYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFI 723

Query: 50   GYDNNSKGYKLYNP 9
            GYDNNSKGYKLYNP
Sbjct: 724  GYDNNSKGYKLYNP 737


>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
          Length = 1352

 Score =  981 bits (2536), Expect = 0.0
 Identities = 488/734 (66%), Positives = 576/734 (78%), Gaps = 2/734 (0%)
 Frame = -2

Query: 2204 FQVPQLKGNDFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXX 2025
            FQVP L  ++++NWS++MKA+LGAHDVWE+VEKG+ E ++E +LS T+            
Sbjct: 8    FQVPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDK 67

Query: 2024 KALFLIYQALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKE 1845
            KAL LIYQ LD+D FEK+  ATSAK+ W+KL+ SYKG ++VKKVRLQTLR EF++LQMKE
Sbjct: 68   KALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKE 127

Query: 1844 GELVSDYFSRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTI 1665
            GELVSDYFSRVLTV+N LKRNGEKL+DV IMEK+LRSLD  F+ I T+IEETKDLE MTI
Sbjct: 128  GELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTI 187

Query: 1664 EQLLGSLQAHEEKKKKK-GVADQLLKTEVQPTKNEENFHXXXXXXXXXXXXXXXXXXXXX 1488
            EQLLGSLQA+EEKKKKK  +A+Q+L  ++   +N +++                      
Sbjct: 188  EQLLGSLQAYEEKKKKKEDIAEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRGW 247

Query: 1487 XXXXXXXXXXNYMQXXXXXXXXXXXXXXXRYDKSQVQCYNCQKFGHYARDCRNP-NTRVN 1311
                         +               RYDKS V+CYNC KFGHYA +C+ P N +  
Sbjct: 248  RPHEDNTN----QRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFE 303

Query: 1310 ERANLVEEKKEDGANVLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVELDESVSGNV 1131
            E+A+ VEEK ++   +L+ +   + + ++  WYLD+GASNHMCGR++MF ELDESV GNV
Sbjct: 304  EKAHYVEEKIQEEDMLLMASYKKDEQKENHKWYLDSGASNHMCGRKSMFAELDESVRGNV 363

Query: 1130 SFGDDSKVAVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDIHLKDNN 951
            + GD+SK+ VKGKG ILIRLK+G HQFISNVYY+P+MKTNILSLGQLLEKGYDI LKDNN
Sbjct: 364  ALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNN 423

Query: 950  LSIRDNMNNLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFGGLELL 771
            LSIRD  +NLI +VPMS+NRMF+LNI+ D+A+CLKMCYK+ SWLWHLRFGHLNFGGLELL
Sbjct: 424  LSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELL 483

Query: 770  SKKNMVRGLPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPIKPNSF 591
            S+K MVRGLPCI+HP+Q+CEGCLLGKQF+ SFPKES+SR+QKPLELIH DVCGPIKP S 
Sbjct: 484  SRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSL 543

Query: 590  GKSNYFLLFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXESGLHIKAMRTDRGGEFTS 411
            GKSNYFLLFIDDFSRKTWVYFLK+KS               ESGL IK MR+DRGGEFTS
Sbjct: 544  GKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTS 603

Query: 410  KEFQEFCEANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAEAVACA 231
            KEF ++CE NGIRR LTVPRSPQQNGV ERKNRTIL M RSMLKSK++PKE WAEAVACA
Sbjct: 604  KEFLKYCEDNGIRRQLTVPRSPQQNGVVERKNRTILEMARSMLKSKRLPKELWAEAVACA 663

Query: 230  VYLSNRSPTRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSEKFIFI 51
            VYL NRSPT+SV GKTPQEAW+GRKPG+SHLRVFGSIAH HVPDE+RSKLDDKSEK+IFI
Sbjct: 664  VYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFI 723

Query: 50   GYDNNSKGYKLYNP 9
            GYDNNSKGYKLYNP
Sbjct: 724  GYDNNSKGYKLYNP 737


>gb|KYP66220.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1331

 Score =  978 bits (2528), Expect = 0.0
 Identities = 498/730 (68%), Positives = 573/730 (78%), Gaps = 3/730 (0%)
 Frame = -2

Query: 2189 LKGNDFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXXKALFL 2010
            L  ++++NWS++M ALLGAHDVWEVVEKG+ E ++  +LS  +            KAL L
Sbjct: 2    LTKSNYDNWSLRMVALLGAHDVWEVVEKGHTEPENVESLSQAQKDSLRDSRKRDKKALCL 61

Query: 2009 IYQALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKEGELVS 1830
            IYQ LD+D FEKIS   +AK+ W+KL++SYKG ++VKKVRLQTLR EF++L MKEGELVS
Sbjct: 62   IYQGLDEDTFEKISGVKTAKEAWEKLKISYKGADQVKKVRLQTLRGEFEALHMKEGELVS 121

Query: 1829 DYFSRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTIEQLLG 1650
            DYFSRVLTV+N LKRNGEKL+DV IMEKILRSLD  F+ I TI EETKDLE M+IEQLLG
Sbjct: 122  DYFSRVLTVTNNLKRNGEKLDDVRIMEKILRSLDPKFEHIVTITEETKDLEAMSIEQLLG 181

Query: 1649 SLQAHEEKKKKKG-VADQLLKTEVQPTKNEENFHXXXXXXXXXXXXXXXXXXXXXXXXXX 1473
            SLQA+EEKKKKK  + +Q+ K  V   K EEN H                          
Sbjct: 182  SLQAYEEKKKKKEEIVEQVFKAHVDSRK-EENAHNQSRRSYSQEQGRGRAYGHGQGRRPN 240

Query: 1472 XXXXXNYMQXXXXXXXXXXXXXXXRYDKSQVQCYNCQKFGHYARDCRNPN-TRVNERANL 1296
                    +               RYDKS+++CYNC KFGHYA +CR PN  +V E+AN 
Sbjct: 241  NNN----QRGESSNRGRGRGNPNSRYDKSRIKCYNCNKFGHYASECRAPNKNKVEEKANY 296

Query: 1295 VEEK-KEDGANVLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVELDESVSGNVSFGD 1119
             EE+ +EDG   LLLA     +G+D+ WYLD+GASNHMCG+R+MFVELDESV GNV+FGD
Sbjct: 297  AEERCQEDGT--LLLAYKGQDKGEDNQWYLDSGASNHMCGKRSMFVELDESVKGNVAFGD 354

Query: 1118 DSKVAVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDIHLKDNNLSIR 939
            +SKVAV+GKG +LI+LK+G HQFISN+YYVP+MK+NILSLGQLLEKGYDI LK+NNLSIR
Sbjct: 355  ESKVAVEGKGNVLIQLKNGEHQFISNIYYVPSMKSNILSLGQLLEKGYDIQLKNNNLSIR 414

Query: 938  DNMNNLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFGGLELLSKKN 759
            DN +  I +VPM RNRMF+LNIQ+D  +CLKMCYKD SWLWHLRFGHLNF GL+LLSKK 
Sbjct: 415  DNTSRFITKVPMMRNRMFVLNIQSDGPQCLKMCYKDQSWLWHLRFGHLNFKGLDLLSKKA 474

Query: 758  MVRGLPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPIKPNSFGKSN 579
            MVRGLPCI+HP+Q+CEGCLLGKQFR SFPKES+SR+QKPLELIH DVCGPIKP S GKSN
Sbjct: 475  MVRGLPCITHPNQVCEGCLLGKQFRLSFPKESDSRAQKPLELIHTDVCGPIKPRSLGKSN 534

Query: 578  YFLLFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXESGLHIKAMRTDRGGEFTSKEFQ 399
            YFLLFIDDFSRKTWVYFLK+KS               ESGL IKA+R+DRGGEFTSKEFQ
Sbjct: 535  YFLLFIDDFSRKTWVYFLKEKSEVFENFKKFKAHVEKESGLLIKALRSDRGGEFTSKEFQ 594

Query: 398  EFCEANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAEAVACAVYLS 219
            ++CE NGIRR LTVPRSPQQNGVAERKNRTIL M RSMLKSKK+PKEFWAEAVACAVYL+
Sbjct: 595  KYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKKLPKEFWAEAVACAVYLT 654

Query: 218  NRSPTRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSEKFIFIGYDN 39
            NRSPTRSV GKTPQEAW+GRKPGISHLRVFGSIAHVHVPDE+RSKLDDKSEK+IFIGYD 
Sbjct: 655  NRSPTRSVSGKTPQEAWSGRKPGISHLRVFGSIAHVHVPDEKRSKLDDKSEKYIFIGYDA 714

Query: 38   NSKGYKLYNP 9
            NSKGYKLYNP
Sbjct: 715  NSKGYKLYNP 724


>emb|CAB75469.1| copia-type reverse transcriptase-like protein [Arabidopsis thaliana]
          Length = 1272

 Score =  978 bits (2527), Expect = 0.0
 Identities = 486/734 (66%), Positives = 574/734 (78%), Gaps = 2/734 (0%)
 Frame = -2

Query: 2204 FQVPQLKGNDFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXX 2025
            FQVP L  ++++NWS++MKA+LGAHDVWE+VEKG+ E ++E +LS T+            
Sbjct: 8    FQVPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDK 67

Query: 2024 KALFLIYQALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKE 1845
            KAL LIYQ LD+D FEK+  ATSAK+ W+KL+ SYKG ++VKKVRLQTLR EF++LQMKE
Sbjct: 68   KALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKE 127

Query: 1844 GELVSDYFSRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTI 1665
            GELVSDYFSRVLTV+N LKRNGEKL+DV IMEK+LRSLD  F+ I T+IEETKDLE MTI
Sbjct: 128  GELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTI 187

Query: 1664 EQLLGSLQAHEEKKKKK-GVADQLLKTEVQPTKNEENFHXXXXXXXXXXXXXXXXXXXXX 1488
            EQLLGSLQA+EEKKKKK  + +Q+L  ++   +N +++                      
Sbjct: 188  EQLLGSLQAYEEKKKKKEDIVEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRGW 247

Query: 1487 XXXXXXXXXXNYMQXXXXXXXXXXXXXXXRYDKSQVQCYNCQKFGHYARDCRNP-NTRVN 1311
                         +               RYDKS V+CYNC KFGHYA +C+ P N +  
Sbjct: 248  RPHEDNTN----QRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFK 303

Query: 1310 ERANLVEEKKEDGANVLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVELDESVSGNV 1131
            E+AN VEEK ++   +L+ +   + + ++  WYLD+GASNHMCGR++MF ELDESV GNV
Sbjct: 304  EKANYVEEKIQEEDMLLMASYKKDEQEENHKWYLDSGASNHMCGRKSMFAELDESVRGNV 363

Query: 1130 SFGDDSKVAVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDIHLKDNN 951
            + GD+SK+ VKGKG ILIRLK+G HQFISNVYY+P+MKTNILSLGQLLEKGYDI LKDNN
Sbjct: 364  ALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNN 423

Query: 950  LSIRDNMNNLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFGGLELL 771
            LSIRD  +NLI +VPMS+NRMF+LNI+ D+A+CLKMCYK+ SWLWHLRFGHLNFGGLELL
Sbjct: 424  LSIRDKESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELL 483

Query: 770  SKKNMVRGLPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPIKPNSF 591
            S+K MVRGLPCI+HP+Q+CEGCLLG QF+ SFPKES+SR+QKPLELIH DVCGPIKP S 
Sbjct: 484  SRKEMVRGLPCINHPNQVCEGCLLGNQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSL 543

Query: 590  GKSNYFLLFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXESGLHIKAMRTDRGGEFTS 411
            GKSNYFLLFIDDFSRKTWVYFLK+KS               ESGL IK MR+D GGEFTS
Sbjct: 544  GKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDSGGEFTS 603

Query: 410  KEFQEFCEANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAEAVACA 231
            KEF ++CE NGIRR LTVPRSPQQNGVAERKNRTIL M RSMLKSK++PKE WAEAVACA
Sbjct: 604  KEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACA 663

Query: 230  VYLSNRSPTRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSEKFIFI 51
            VYL NRSPT+SV GKTPQEAW+GRKPG+SHLRVFGSIAH HVPDE+R+KLDDKSEK+IFI
Sbjct: 664  VYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRNKLDDKSEKYIFI 723

Query: 50   GYDNNSKGYKLYNP 9
            GYDNNSKGYKLYNP
Sbjct: 724  GYDNNSKGYKLYNP 737


>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
          Length = 1352

 Score =  976 bits (2524), Expect = 0.0
 Identities = 487/734 (66%), Positives = 574/734 (78%), Gaps = 2/734 (0%)
 Frame = -2

Query: 2204 FQVPQLKGNDFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXX 2025
            FQVP L  ++++NWS++MKA+LGAHDVWE+VEKG+ E ++E +LS T+            
Sbjct: 8    FQVPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDK 67

Query: 2024 KALFLIYQALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKE 1845
            KAL LIYQ LD+D FEK+  ATSAK+ W+KL+ SYKG ++VKKVRLQTLR EF++LQMKE
Sbjct: 68   KALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKE 127

Query: 1844 GELVSDYFSRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTI 1665
            GELVSDYFSRVLTV+N LKRNGEKL+DV IMEK+LRSLD  F+ I T+IEETKDLE MTI
Sbjct: 128  GELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTI 187

Query: 1664 EQLLGSLQAHEEKKKKK-GVADQLLKTEVQPTKNEENFHXXXXXXXXXXXXXXXXXXXXX 1488
            EQLLGSLQA+EEKKKKK  + +Q+L  ++   +N +++                      
Sbjct: 188  EQLLGSLQAYEEKKKKKEDIIEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRGW 247

Query: 1487 XXXXXXXXXXNYMQXXXXXXXXXXXXXXXRYDKSQVQCYNCQKFGHYARDCRNP-NTRVN 1311
                         +               RYDKS V+CYNC KFGHYA +C+ P N +  
Sbjct: 248  RPHEDNTN----QRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFE 303

Query: 1310 ERANLVEEKKEDGANVLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVELDESVSGNV 1131
            E+AN VEEK ++   +L+ +   + + ++  WYLD+GASNHMCGR++MF ELDESV GNV
Sbjct: 304  EKANYVEEKIQEEDMLLMASYKKDEQEENHKWYLDSGASNHMCGRKSMFAELDESVRGNV 363

Query: 1130 SFGDDSKVAVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDIHLKDNN 951
            + GD+SK+ VKGKG ILIRLK+G HQFISNVYY+P+MKTNILSLGQLLEKGYDI LKDNN
Sbjct: 364  ALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNN 423

Query: 950  LSIRDNMNNLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFGGLELL 771
            LSIRD  +NLI +VPMS+NRMF+LNI+ D+A+CLKMCYK+ SWLWHLRFGHLNFGGLELL
Sbjct: 424  LSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELL 483

Query: 770  SKKNMVRGLPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPIKPNSF 591
            S+K MVRGLPCI+HP+Q+CEGCLLGKQF+ SFPKES+SR+QK LELIH DVCGPIKP S 
Sbjct: 484  SRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKSLELIHTDVCGPIKPKSL 543

Query: 590  GKSNYFLLFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXESGLHIKAMRTDRGGEFTS 411
            GKSNYFLLFIDDFSRKTWVYFLK+KS               ESGL IK MR+DRGGEFTS
Sbjct: 544  GKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTS 603

Query: 410  KEFQEFCEANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAEAVACA 231
            KEF ++CE NGIRR LTVPRSPQQNGVAERKNRTIL M RSMLKSK++PKE WAEAVACA
Sbjct: 604  KEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACA 663

Query: 230  VYLSNRSPTRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSEKFIFI 51
            VYL NRSPT+SV GKTPQEAW+GRK G+SHLRVFGSIAH HVPDE+RSKLDDKSEK+IFI
Sbjct: 664  VYLLNRSPTKSVSGKTPQEAWSGRKSGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFI 723

Query: 50   GYDNNSKGYKLYNP 9
            GYDNNSKGYKLYNP
Sbjct: 724  GYDNNSKGYKLYNP 737


>ref|XP_013688817.1| PREDICTED: uncharacterized protein LOC106392554, partial [Brassica
            napus]
          Length = 2682

 Score =  965 bits (2495), Expect = 0.0
 Identities = 478/734 (65%), Positives = 573/734 (78%), Gaps = 2/734 (0%)
 Frame = -2

Query: 2204 FQVPQLKGNDFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXX 2025
            FQVP L  ++++NWS+++ A+LGAHDVWE+VEKG+ E +++  LS T+            
Sbjct: 1357 FQVPLLTKSNYDNWSLRLMAILGAHDVWEIVEKGFNEPENDGGLSQTQKDGLRDSRKRDK 1416

Query: 2024 KALFLIYQALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKE 1845
            KAL LIYQ LD+D FEK++ A ++K+ W+KL+ SYKG E+VKKVRLQTLR EF++LQMKE
Sbjct: 1417 KALCLIYQGLDEDTFEKVAGAKTSKEAWEKLRTSYKGAEQVKKVRLQTLRGEFEALQMKE 1476

Query: 1844 GELVSDYFSRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTI 1665
            GEL+SDYFSRVLTV+N LKRNGEKL+DV IMEK+LRSLD+ F+ I T+IEETKDLETMT+
Sbjct: 1477 GELISDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDSKFEHIVTVIEETKDLETMTM 1536

Query: 1664 EQLLGSLQAHEEKKKKK-GVADQLLKTEVQPTKNEENFHXXXXXXXXXXXXXXXXXXXXX 1488
            EQLLGSLQA+EEKKKKK  + +Q+LK  +   +     H                     
Sbjct: 1537 EQLLGSLQAYEEKKKKKEDIVEQVLKMRIDHKEESGRNHPRRGGGHFRGRGRGVNGRGWR 1596

Query: 1487 XXXXXXXXXXNYMQXXXXXXXXXXXXXXXRYDKSQVQCYNCQKFGHYARDCRNPNT-RVN 1311
                         +               RYDKS ++CY+C KFGHYA +C+ PN  RV 
Sbjct: 1597 PYEDNFN-----QRGENSSRGRGRGNPKSRYDKSSIKCYSCGKFGHYASECKTPNNNRVE 1651

Query: 1310 ERANLVEEKKEDGANVLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVELDESVSGNV 1131
            E++N VEE++++  ++LL+A   +   +   WYLD+GASNHMCG ++MFVELDESV  +V
Sbjct: 1652 EKSNYVEERRKE-EDMLLMAYKKDEPNEVHKWYLDSGASNHMCGNKSMFVELDESVKTDV 1710

Query: 1130 SFGDDSKVAVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDIHLKDNN 951
            + GD+S++ VKGKG ILIRLK+G HQFISNVYY+P+MKTNILSLGQLLEKGYDI LKDN+
Sbjct: 1711 ALGDESRMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNS 1770

Query: 950  LSIRDNMNNLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFGGLELL 771
            LS+RDN NNLI +VPMS NRMF+LNIQ D+A+CLKMCYK+ SWLWHLRFGHLNFGGLELL
Sbjct: 1771 LSLRDNANNLITKVPMSSNRMFVLNIQNDIARCLKMCYKEESWLWHLRFGHLNFGGLELL 1830

Query: 770  SKKNMVRGLPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPIKPNSF 591
            SKK MV+GLPCI+HP+Q+CEGCLLGKQF+ SFPKES +R++KPLELIH DVCGPIKP+S 
Sbjct: 1831 SKKEMVKGLPCINHPNQVCEGCLLGKQFKMSFPKESETRARKPLELIHTDVCGPIKPSSL 1890

Query: 590  GKSNYFLLFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXESGLHIKAMRTDRGGEFTS 411
            GKSNYFLLFIDDFSRKTWVYFLKQKS               ESGL IK+MR+DRGGEF S
Sbjct: 1891 GKSNYFLLFIDDFSRKTWVYFLKQKSEVFENFKKFKAHVEKESGLKIKSMRSDRGGEFMS 1950

Query: 410  KEFQEFCEANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAEAVACA 231
            KEF ++CE NGIRR LTVPR+PQQNGVAERKNRTIL M RSMLKSKK+PKE WAEAVACA
Sbjct: 1951 KEFLKYCEDNGIRRQLTVPRTPQQNGVAERKNRTILEMARSMLKSKKLPKELWAEAVACA 2010

Query: 230  VYLSNRSPTRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSEKFIFI 51
            VY+SNRSPT+SV  KTPQEAW+GRKPG+SHLRVFGSIAH HVPDE+RSKLDDKSEK+IFI
Sbjct: 2011 VYISNRSPTKSVLEKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFI 2070

Query: 50   GYDNNSKGYKLYNP 9
            GYD NSKGYKLYNP
Sbjct: 2071 GYDANSKGYKLYNP 2084



 Score =  959 bits (2480), Expect = 0.0
 Identities = 477/734 (64%), Positives = 572/734 (77%), Gaps = 2/734 (0%)
 Frame = -2

Query: 2204 FQVPQLKGNDFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXX 2025
            FQVP L  ++++NWS++M A+LGAHDVWE+VEKG+ E +++  LS T+            
Sbjct: 18   FQVPLLTKSNYDNWSLRMMAILGAHDVWEIVEKGFVEPENDGGLSQTQKDGLRDSRKRDK 77

Query: 2024 KALFLIYQALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKE 1845
            KAL LI+Q LD+D FEK++ A ++K+ W+KL+ SYKG E+VKKVRLQTLR EF++LQMKE
Sbjct: 78   KALCLIHQGLDEDTFEKVAGAKTSKEAWEKLRTSYKGAEQVKKVRLQTLRGEFEALQMKE 137

Query: 1844 GELVSDYFSRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTI 1665
            GEL+SDYFSRVLTV+N LKRNGEKL++V IMEK+LRSLD+ F+ I TIIEETKDLETMT+
Sbjct: 138  GELISDYFSRVLTVTNNLKRNGEKLDEVRIMEKVLRSLDSKFEHIVTIIEETKDLETMTM 197

Query: 1664 EQLLGSLQAHEEKKKKK-GVADQLLKTEVQPTKNEENFHXXXXXXXXXXXXXXXXXXXXX 1488
            EQLLGSLQA+EEKKKKK  + +Q+LK  +   +     +                     
Sbjct: 198  EQLLGSLQAYEEKKKKKEDIVEQVLKMRIDHKEESGRSNLRRGGGHFRGRGCGVNGRGWR 257

Query: 1487 XXXXXXXXXXNYMQXXXXXXXXXXXXXXXRYDKSQVQCYNCQKFGHYARDCRNPN-TRVN 1311
                         +               RYDKS ++CY+C KFGHYA +C+ PN  RV 
Sbjct: 258  PYEDNFN-----QRGENSSRGRGRGNPKSRYDKSSIKCYSCGKFGHYASECKTPNKNRVE 312

Query: 1310 ERANLVEEKKEDGANVLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVELDESVSGNV 1131
            E++N VEE+ ++  ++LL+A   +   +   WYLD+GASNHMCG ++MFVELDESV  +V
Sbjct: 313  EKSNYVEERSKE-EDMLLMAYKKDEPNEVHKWYLDSGASNHMCGNKSMFVELDESVKTDV 371

Query: 1130 SFGDDSKVAVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDIHLKDNN 951
            + GD+S++ VKGKG ILIRLK+G HQFISNVYY+P+MKTNILSLGQLLEKGYDI LKDN+
Sbjct: 372  ALGDESRMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNS 431

Query: 950  LSIRDNMNNLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFGGLELL 771
            LS+RDN NNLI +VPMS NRMF+LNIQ D+A+CLKMCYK+ SWLWHLRFGHLNFGGLELL
Sbjct: 432  LSLRDNANNLITKVPMSSNRMFVLNIQNDIARCLKMCYKEESWLWHLRFGHLNFGGLELL 491

Query: 770  SKKNMVRGLPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPIKPNSF 591
            SKK MV+GLPCI+HP+Q+CEGCLLGKQF+ SFPKES +R++KPLELIH DVCGPIKP+S 
Sbjct: 492  SKKEMVKGLPCINHPNQVCEGCLLGKQFKMSFPKESETRARKPLELIHTDVCGPIKPSSL 551

Query: 590  GKSNYFLLFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXESGLHIKAMRTDRGGEFTS 411
            GKSNYFLLFIDDFSRKTWVYFLKQKS               ESGL IK+MR+DRGGEF S
Sbjct: 552  GKSNYFLLFIDDFSRKTWVYFLKQKSEVFENFKKFKAHVEKESGLKIKSMRSDRGGEFMS 611

Query: 410  KEFQEFCEANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAEAVACA 231
            KEF ++CE NGIRR LTVPR+PQQNGVAERKNRTIL M RSMLKSKK+PKE WAEAVACA
Sbjct: 612  KEFLKYCEDNGIRRQLTVPRTPQQNGVAERKNRTILEMARSMLKSKKLPKELWAEAVACA 671

Query: 230  VYLSNRSPTRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSEKFIFI 51
            VY+SNRSPT+SV  KTPQEAW+GRKPG+SHLRVFGSIAH HVPDE+RSKLDDKSEK+IFI
Sbjct: 672  VYISNRSPTKSVLEKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFI 731

Query: 50   GYDNNSKGYKLYNP 9
            GYD NSKGYKLYNP
Sbjct: 732  GYDANSKGYKLYNP 745


>gb|KYP66219.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1033

 Score =  754 bits (1948), Expect = 0.0
 Identities = 366/465 (78%), Positives = 409/465 (87%), Gaps = 2/465 (0%)
 Frame = -2

Query: 1397 YDKSQVQCYNCQKFGHYARDCRNPN-TRVNERANLVEEK-KEDGANVLLLARNDNGEGQD 1224
            YDKS+++CYNC KFGHYA +CR PN  +V E+AN  EE+ +EDG   LLLA     +G+D
Sbjct: 207  YDKSRIKCYNCNKFGHYASECRAPNKNKVEEKANYAEERCQEDGT--LLLAYKGQDKGED 264

Query: 1223 DTWYLDTGASNHMCGRRTMFVELDESVSGNVSFGDDSKVAVKGKGTILIRLKDGRHQFIS 1044
            + WYLD+GASNHMCG+R+MFVELDESV GNV+FGD+SKVAV+GKG +LIRLK+G HQFIS
Sbjct: 265  NQWYLDSGASNHMCGKRSMFVELDESVKGNVAFGDESKVAVEGKGNVLIRLKNGEHQFIS 324

Query: 1043 NVYYVPTMKTNILSLGQLLEKGYDIHLKDNNLSIRDNMNNLIARVPMSRNRMFLLNIQTD 864
            NVYYVP+MK+NILSLGQLLEKGYDI LK+NNLSIRDN +  IA+VPM+RNRMF+LNIQ+D
Sbjct: 325  NVYYVPSMKSNILSLGQLLEKGYDIQLKNNNLSIRDNTSRFIAKVPMTRNRMFVLNIQSD 384

Query: 863  VAKCLKMCYKDSSWLWHLRFGHLNFGGLELLSKKNMVRGLPCISHPDQLCEGCLLGKQFR 684
              +CLKMCYKD SWLWHLRFGHLNF GLELLSKK MVRGLPCI+HP+Q+CEGCLLGKQFR
Sbjct: 385  GPQCLKMCYKDQSWLWHLRFGHLNFKGLELLSKKAMVRGLPCITHPNQVCEGCLLGKQFR 444

Query: 683  QSFPKESNSRSQKPLELIHADVCGPIKPNSFGKSNYFLLFIDDFSRKTWVYFLKQKSXXX 504
             SFPKES+SR+QKPLELIH DVCGPIKP S GKSNYFLLFIDDFSRKTWVYFLK+KS   
Sbjct: 445  LSFPKESDSRAQKPLELIHTDVCGPIKPRSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVF 504

Query: 503  XXXXXXXXXXXXESGLHIKAMRTDRGGEFTSKEFQEFCEANGIRRPLTVPRSPQQNGVAE 324
                        ESGL IKA+R+DRGGEFTSKEFQ++CE NGIRR LTVPRSPQQNGVAE
Sbjct: 505  ENFKKFKAHVEKESGLLIKALRSDRGGEFTSKEFQKYCEDNGIRRQLTVPRSPQQNGVAE 564

Query: 323  RKNRTILNMVRSMLKSKKMPKEFWAEAVACAVYLSNRSPTRSVWGKTPQEAWNGRKPGIS 144
            RKNRTIL M RSMLKSKK+PKEFWAEAVACAVYL+NRSPTRSV GKTPQEAW+GRKPGIS
Sbjct: 565  RKNRTILEMARSMLKSKKLPKEFWAEAVACAVYLTNRSPTRSVSGKTPQEAWSGRKPGIS 624

Query: 143  HLRVFGSIAHVHVPDEQRSKLDDKSEKFIFIGYDNNSKGYKLYNP 9
            HLRVFGSIAHVHVPDE+RSKLDDKSEK+IFIGYD NSKGYKLYNP
Sbjct: 625  HLRVFGSIAHVHVPDEKRSKLDDKSEKYIFIGYDANSKGYKLYNP 669



 Score =  228 bits (580), Expect = 1e-59
 Identities = 116/180 (64%), Positives = 141/180 (78%)
 Frame = -2

Query: 2189 LKGNDFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXXKALFL 2010
            L  ++++NWS++M ALLGAHDVWEVVEKG+ E ++  +LS  +            KAL L
Sbjct: 2    LTKSNYDNWSLRMVALLGAHDVWEVVEKGHTEPENVESLSQAQKDSLRDSRKRDKKALCL 61

Query: 2009 IYQALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKEGELVS 1830
            IYQ LD+D FEKIS   +AK+ W+KL++SYKG ++VKKVRLQTLR EF++L MKEGELVS
Sbjct: 62   IYQGLDEDTFEKISGVKTAKEAWEKLKISYKGADQVKKVRLQTLRGEFEALHMKEGELVS 121

Query: 1829 DYFSRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTIEQLLG 1650
            DYFSRVLTV+N LKRNGEKL+DV IMEKILRSLD  F+ I TI EETKDLE M+IEQLLG
Sbjct: 122  DYFSRVLTVTNNLKRNGEKLDDVRIMEKILRSLDPKFEHIVTITEETKDLEAMSIEQLLG 181


>gb|AIC77183.1| polyprotein [Gossypium barbadense]
          Length = 1369

 Score =  713 bits (1841), Expect = 0.0
 Identities = 359/756 (47%), Positives = 489/756 (64%), Gaps = 17/756 (2%)
 Frame = -2

Query: 2222 MASVASFQVPQLKGNDFENWSIKMKALLGAHDVWEVVEKGYEETKD---ESTLSSTEXXX 2052
            M  V   QVPQL   ++ NWSI+MKALLG+ D WE+VEKGY E  D   E+ LS+     
Sbjct: 1    MGDVIQLQVPQLTKTNYGNWSIRMKALLGSQDCWEIVEKGYIEPGDAATEAALSNDAKKA 60

Query: 2051 XXXXXXXXXKALFLIYQALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRR 1872
                     KAL  I+Q +D+  FEKIS   +AK  W+ LQ S++G EK KKVRLQ+LR 
Sbjct: 61   LREARKKDQKALNSIFQGMDESTFEKISDVKNAKNAWEILQKSFQGVEKAKKVRLQSLRA 120

Query: 1871 EFDSLQMKEGELVSDYFSRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEE 1692
            EF+ L+MK  E + DY +RV +V N++KRNGE L++V +MEKILRSL   F+ +   IEE
Sbjct: 121  EFEMLKMKSSENIDDYANRVKSVVNEMKRNGETLDEVRVMEKILRSLTRKFEYVVVAIEE 180

Query: 1691 TKDLETMTIEQLLGSLQAHEEKKKKKGVADQL-----LKTEVQPTKNEENF-------HX 1548
            +KDL  M++E+L+GSLQAHE+K K    ++ L      K  +   +   NF         
Sbjct: 181  SKDLSKMSLEELVGSLQAHEQKMKLNEDSENLNQALHSKLSIDDGETSNNFSQGRGNRRG 240

Query: 1547 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYMQXXXXXXXXXXXXXXXRYDKSQVQCYN 1368
                                          +Y                 + +KSQVQCYN
Sbjct: 241  YRGGYRGGNRGGRGSRGRGNQSYGRYQENKDYQTSNRGRGSRGRGRGRFQENKSQVQCYN 300

Query: 1367 CQKFGHYARDCRNPNTRVNERANLV--EEKKEDGANVLLLARNDNGEGQDDTWYLDTGAS 1194
            C K+GH++ +CR+ + +V+ER ++    E  E   + + L   +N + +   WYLD GAS
Sbjct: 301  CNKYGHFSYECRSTH-KVDERNHVAVAAEGNEKVESSVFLTYGENEDRKRSVWYLDNGAS 359

Query: 1193 NHMCGRRTMFVELDESVSGNVSFGDDSKVAVKGKGTILIRLKDGRHQFISNVYYVPTMKT 1014
            NHMCGR+ +F ELDE+V G ++FGD+S   +KGKG ++I  ++G  ++IS+VYYVP +K+
Sbjct: 360  NHMCGRKELFTELDETVHGQITFGDNSHAEIKGKGKVVITQRNGEKKYISDVYYVPALKS 419

Query: 1013 NILSLGQLLEKGYDIHLKDNNLSIRDNMNNLIARVPMSRNRMFLLNIQTDVAKCLKMCYK 834
            N++SLGQLLEKGY++H+KD +L+IR+    L+ RV M+RNR+F L+I++   KC+K   K
Sbjct: 420  NLISLGQLLEKGYEVHMKDRSLAIRNKSGELVVRVDMTRNRLFTLDIESGEVKCMKTDLK 479

Query: 833  DSSWLWHLRFGHLNFGGLELLSKKNMVRGLPCISHPDQLCEGCLLGKQFRQSFPKESNSR 654
            + SWLWHLR+GHL F GL+LLSK NMV GLP I+HPDQLCE C+ GKQ RQ F    + R
Sbjct: 480  NESWLWHLRYGHLGFSGLKLLSKTNMVNGLPSINHPDQLCEACVKGKQHRQKFEVGKSRR 539

Query: 653  SQKPLELIHADVCGPIKPNSFGKSNYFLLFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXX 474
            +++PLE++H D+ GP    S G + Y+L FIDD+SRK WVYFLK KS             
Sbjct: 540  ARRPLEIVHTDISGPYDIESLGGNRYYLTFIDDYSRKCWVYFLKAKSEALEKFKEFKAMV 599

Query: 473  XXESGLHIKAMRTDRGGEFTSKEFQEFCEANGIRRPLTVPRSPQQNGVAERKNRTILNMV 294
              +SG ++K +R+DRGGE+T+K ++ FC+ +GI   LT  R+PQQNGVAERKNRTIL+M 
Sbjct: 600  EKQSGRYLKILRSDRGGEYTAKLYESFCKDHGIIHQLTARRTPQQNGVAERKNRTILDMA 659

Query: 293  RSMLKSKKMPKEFWAEAVACAVYLSNRSPTRSVWGKTPQEAWNGRKPGISHLRVFGSIAH 114
            RSM+K K +P+ FWAEAV CAVYL N+ PT+SV  KTP+EAW+G KP + HL++FG IA+
Sbjct: 660  RSMIKGKHLPRTFWAEAVECAVYLLNQCPTKSVRHKTPEEAWSGHKPRVGHLKIFGCIAY 719

Query: 113  VHVPDEQRSKLDDKSEKFIFIGYDNNSKGYKLYNPI 6
             HVP++QR KLDD+ EK IFIGYD  SK Y+LYNP+
Sbjct: 720  AHVPEQQRKKLDDRGEKCIFIGYDKRSKAYRLYNPL 755


>gb|AGW47867.1| polyprotein [Phaseolus vulgaris]
          Length = 1471

 Score =  697 bits (1798), Expect = 0.0
 Identities = 358/761 (47%), Positives = 492/761 (64%), Gaps = 21/761 (2%)
 Frame = -2

Query: 2222 MASVAS-FQVPQL-KGNDFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXX 2049
            MA+V     +P+L K   ++NWSI+MKALLG+ D WEVVE+G+EE  + +  ++ +    
Sbjct: 1    MANVTGQIPLPRLTKATRYDNWSIQMKALLGSQDSWEVVEEGFEEPTNTTGYTAAQTKAL 60

Query: 2048 XXXXXXXXKALFLIYQALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRRE 1869
                     AL+++Y+A+D+  FEKI+ A+++K+ WD L+  +KG ++VK+VRLQTLR E
Sbjct: 61   KEMRSKDKAALYMLYRAVDEAIFEKIAGASTSKEAWDILEKVFKGADRVKQVRLQTLRGE 120

Query: 1868 FDSLQMKEGELVSDYFSRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEET 1689
             ++++M E E VSDY +RV  V NQL RNGE L D  ++EKILR+L  NF+SI   IEE+
Sbjct: 121  LENMKMMESESVSDYITRVQAVVNQLNRNGETLTDARVVEKILRTLTDNFESIVCAIEES 180

Query: 1688 KDLETMTIEQLLGSLQAHEEKKKKKG--VADQLLKTEVQPTKNEENFHXXXXXXXXXXXX 1515
            KDL T+T+++L GSL+AHE++KKKK     +Q L+T+      +  +H            
Sbjct: 181  KDLATLTVDELAGSLEAHEQRKKKKKEETLEQALQTKASIKDEKVLYHQNSQYRGRGRGS 240

Query: 1514 XXXXXXXXXXXXXXXXXXXNYMQXXXXXXXXXXXXXXXRYDKSQVQCYNCQKFGHYARDC 1335
                                                  R + S ++CY C K+GHYA+DC
Sbjct: 241  RGNGRGGKGSNHEGYYKEKEQSSQPNWRGRGRGRGRGGRSNYSNIECYKCHKYGHYAKDC 300

Query: 1334 RNP-----------------NTRVNERANLVEEKKEDGANVLLLARNDNGEGQDDTWYLD 1206
             +                  + ++ E  NL  E  E    VLL+A+++     D  WYLD
Sbjct: 301  NSDKCYNCGKVGHFAKDCRADIKIEETTNLALEV-ETNEGVLLMAQDEVNINNDTLWYLD 359

Query: 1205 TGASNHMCGRRTMFVELDESVSGNVSFGDDSKVAVKGKGTILIRLKDGRHQFISNVYYVP 1026
            +GASNHMCG   +F ++ +   G+VSFGD SKV VKG+GT+    KDG    + +VYYVP
Sbjct: 360  SGASNHMCGHEYLFKDMQKIEDGHVSFGDASKVEVKGRGTVCYLQKDGLIGSLQDVYYVP 419

Query: 1025 TMKTNILSLGQLLEKGYDIHLKDNNLSIRDNMNNLIARVPMSRNRMFLLNIQTDVAKCLK 846
             +KTNILS+GQL EKGY I LKD  L +++    L+AR+ M+RNRM+ LN+++   KCL+
Sbjct: 420  DLKTNILSMGQLTEKGYSIFLKDRFLHLKNKQGCLVARIEMARNRMYKLNLRSIREKCLQ 479

Query: 845  MCYKDSSWLWHLRFGHLNFGGLELLSKKNMVRGLPCISHPDQLCEGCLLGKQFRQSFPKE 666
            +  +D + LWHLRFGHL+ GGL+ L+KKNMV GLP + +  + CE C+L K  R SFPK+
Sbjct: 480  VNIEDKASLWHLRFGHLHHGGLKELAKKNMVHGLPNMDYEGKFCEECVLSKHVRTSFPKK 539

Query: 665  SNSRSQKPLELIHADVCGPIKPNSFGKSNYFLLFIDDFSRKTWVYFLKQKSXXXXXXXXX 486
            +   +++PLELIH D+CGPI P SF    YF+ FIDDFSRKTWVYFLK+KS         
Sbjct: 540  AQYWAKQPLELIHTDICGPITPESFSGKRYFITFIDDFSRKTWVYFLKEKSEAFEVFKKF 599

Query: 485  XXXXXXESGLHIKAMRTDRGGEFTSKEFQEFCEANGIRRPLTVPRSPQQNGVAERKNRTI 306
                   +   IKA+R+DRGGE+TS  F E+CE  GIRR LT P +PQQNGVAERKNRTI
Sbjct: 600  KVMVERTTDKQIKAVRSDRGGEYTSTTFMEYCEEQGIRRFLTAPYTPQQNGVAERKNRTI 659

Query: 305  LNMVRSMLKSKKMPKEFWAEAVACAVYLSNRSPTRSVWGKTPQEAWNGRKPGISHLRVFG 126
            L+MVRSMLKSKKMPKEFWAEAV CA+Y+ NR P   +  +TPQEAW+G+KP +SHL+VFG
Sbjct: 660  LDMVRSMLKSKKMPKEFWAEAVQCAIYVQNRCPHVKLDDQTPQEAWSGQKPTVSHLKVFG 719

Query: 125  SIAHVHVPDEQRSKLDDKSEKFIFIGYDNNSKGYKLYNPIN 3
            S+A+ HVPD++R+KL+DKS++++FIGYD  +KGYKL +PI+
Sbjct: 720  SVAYAHVPDQRRTKLEDKSKRYVFIGYDEKTKGYKLLDPIS 760


>gb|KYP39674.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1321

 Score =  661 bits (1706), Expect = 0.0
 Identities = 347/741 (46%), Positives = 471/741 (63%), Gaps = 10/741 (1%)
 Frame = -2

Query: 2198 VPQL-KGNDFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXXK 2022
            VPQL +  ++ENWS++MKALL +  +WEVV+KGYEE ++E  L+ T+             
Sbjct: 3    VPQLTQETNYENWSLQMKALLRSQRLWEVVQKGYEEPEEEEELTVTQLATLEKMQAKDSS 62

Query: 2021 ALFLIYQALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKEG 1842
            AL+ +Y A+D+  FEKI SA ++K+ W+ L+V+++G  +V+++RLQTLR EF++L+M++ 
Sbjct: 63   ALYFLYNAVDELDFEKIGSAANSKEAWETLEVAHRGSSRVRQIRLQTLRGEFENLKMEDR 122

Query: 1841 ELVSDYFSRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTIE 1662
            E ++++ SRV  V+NQL R+GE + +  I+EKILRSL+ +FD +   IEE+KDL T+T+E
Sbjct: 123  EPITEFVSRVQKVTNQLMRSGEPVPENRIVEKILRSLNKDFDYVVCAIEESKDLTTLTVE 182

Query: 1661 QLLGSLQAHEEK-KKKKGVADQLLKTEVQPTKNEENFHXXXXXXXXXXXXXXXXXXXXXX 1485
            +L GSL+AHE++ KK K   DQ L+  ++ T  +                          
Sbjct: 183  ELAGSLKAHEQRIKKGKEPLDQALQARLEFTGGQST------------------------ 218

Query: 1484 XXXXXXXXXNYMQXXXXXXXXXXXXXXXRYDKSQVQCYNCQKFGHYARDCRNPNTRVNER 1305
                        Q                 +     CY C K GH A+ C+N  +     
Sbjct: 219  ------------QKGGSRGRGSRGRGGRAKECRTATCYKCGKIGHIAKYCKNDTSE---- 262

Query: 1304 ANLVEEKKEDGANVLLLARNDNGE---GQDDT-----WYLDTGASNHMCGRRTMFVELDE 1149
             NL  E+  +   VL+L R+D  E   G +D+     WYLDTGASNHMCG+ ++F +L +
Sbjct: 263  KNLFSEEGNEEVGVLMLTRSDECETSRGIEDSPDTSIWYLDTGASNHMCGQESLFSDLVK 322

Query: 1148 SVSGNVSFGDDSKVAVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDI 969
              +G+VSFGD+SK+AV+G GTI    KDGR   I NV YVP ++TNILS+GQ++EKG  +
Sbjct: 323  QEAGSVSFGDNSKIAVRGSGTIRHVQKDGRVGEIRNVLYVPKLRTNILSMGQIMEKGNSV 382

Query: 968  HLKDNNLSIRDNMNNLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNF 789
             +KD  L +RD  N LIA   M  NRM+ L +     KCLK+ +KD + +WH RFGHLNF
Sbjct: 383  LMKDRGLYLRDRNNRLIACEEMKENRMYKLELNILQKKCLKLDHKDEAMIWHYRFGHLNF 442

Query: 788  GGLELLSKKNMVRGLPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGP 609
            GGL  LSKK +V GLP I    + CE C+LGK  R  FPK +  R+++ L LIH D+CGP
Sbjct: 443  GGLNELSKKELVHGLPGIKFEKKFCEECVLGKHHRVGFPKSALYRTEEKLGLIHTDLCGP 502

Query: 608  IKPNSFGKSNYFLLFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXESGLHIKAMRTDR 429
            I P+SF    YF+ FIDD SRKTWVY L++KS               E+G  IK +R+DR
Sbjct: 503  ISPSSFSGKKYFISFIDDLSRKTWVYLLQEKSEAFEVFKRFRLMVEKETGRQIKGIRSDR 562

Query: 428  GGEFTSKEFQEFCEANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWA 249
            GGEF S  F E+CE +GIRR LT P SPQQNGVAERKNRTI++MVRSMLK K M ++FWA
Sbjct: 563  GGEFISSSFMEYCEDHGIRRFLTAPYSPQQNGVAERKNRTIMDMVRSMLKGKNMLEKFWA 622

Query: 248  EAVACAVYLSNRSPTRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKS 69
            EAV CAVY+ NR P   + G TPQEAW+GRKP +SH +VFGSIA+ HVP + R+KLDD+S
Sbjct: 623  EAVQCAVYIQNRCPHSKLNGATPQEAWSGRKPSVSHFKVFGSIAYAHVPAQLRTKLDDRS 682

Query: 68   EKFIFIGYDNNSKGYKLYNPI 6
            +K+I IGYD  +K YKLYNP+
Sbjct: 683  KKYILIGYDERAKAYKLYNPV 703


>gb|AAF16534.1|AC013482_8 T26F17.17 [Arabidopsis thaliana]
          Length = 1291

 Score =  645 bits (1664), Expect = 0.0
 Identities = 314/439 (71%), Positives = 363/439 (82%)
 Frame = -2

Query: 1325 NTRVNERANLVEEKKEDGANVLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVELDES 1146
            N +  E+AN VEEK ++   +L+ +   + + ++  WYLD+GASNHMCGR++MF ELDES
Sbjct: 261  NKKFEEKANYVEEKIQEEDMLLMASYKKDEQEENHKWYLDSGASNHMCGRKSMFAELDES 320

Query: 1145 VSGNVSFGDDSKVAVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDIH 966
            V GNV+ GD+SK+ VKGKG ILIRLK+G HQFISNVYY+P+MKTNILSLGQLLEKGYDI 
Sbjct: 321  VRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIR 380

Query: 965  LKDNNLSIRDNMNNLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFG 786
            LKDNNLSIRD  +NLI +VPMS+NRMF+LNI+ D+A+CLKMCYK+ SWLWHLRFGHLNFG
Sbjct: 381  LKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFG 440

Query: 785  GLELLSKKNMVRGLPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPI 606
            GLELLS+K MVRGLPCI+HP+Q+CEGCLLGKQF+ SFPKES+SR+QKPLELIH DVCGPI
Sbjct: 441  GLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPI 500

Query: 605  KPNSFGKSNYFLLFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXESGLHIKAMRTDRG 426
            KP S  KS  F +F     +K   +  K+                  SGL IK MR+DRG
Sbjct: 501  KPKSLEKSEVFKIF-----KKFKAHVEKE------------------SGLVIKTMRSDRG 537

Query: 425  GEFTSKEFQEFCEANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAE 246
            GEFTSKEF ++CE NGIRR LTVPRSPQQNGVAERKNRTIL M RSMLKSK++PKE WAE
Sbjct: 538  GEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAE 597

Query: 245  AVACAVYLSNRSPTRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSE 66
            AVACAVYL NRSPT+SV GKTPQEAW+GRKPG+SHLRVFGSIAH HVPDE+RSKLDDKSE
Sbjct: 598  AVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSE 657

Query: 65   KFIFIGYDNNSKGYKLYNP 9
            K+IFIGYDNNSKGYKLYNP
Sbjct: 658  KYIFIGYDNNSKGYKLYNP 676



 Score =  271 bits (694), Expect = 4e-74
 Identities = 137/218 (62%), Positives = 173/218 (79%), Gaps = 1/218 (0%)
 Frame = -2

Query: 2204 FQVPQLKGNDFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXX 2025
            FQVP L  ++++NWS++MKA+LGAHDVWE+VEKG+ E ++E +LS T+            
Sbjct: 8    FQVPVLTKSNYDNWSLQMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDK 67

Query: 2024 KALFLIYQALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKE 1845
            KAL LIYQ LD+D FEK+  ATSAK+ W+KL+ SYKG ++VKKVRLQTLR EF++LQMKE
Sbjct: 68   KALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGVDQVKKVRLQTLRGEFEALQMKE 127

Query: 1844 GELVSDYFSRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTI 1665
            GELVSDYFSRVLTV+N LKRNGEKL+DV IMEK+LRSLD  F+ I T+IEETKDLE MTI
Sbjct: 128  GELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTI 187

Query: 1664 EQLLGSLQAHEEKKKKK-GVADQLLKTEVQPTKNEENF 1554
            EQLLGSLQA+EEKKKKK  + +Q+L   +   +N +++
Sbjct: 188  EQLLGSLQAYEEKKKKKEDIVEQVLNMRITKEENGQSY 225


>gb|KYP60019.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 865

 Score =  595 bits (1535), Expect = 0.0
 Identities = 315/717 (43%), Positives = 427/717 (59%), Gaps = 1/717 (0%)
 Frame = -2

Query: 2153 MKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXXKALFLIYQALDDDGFEK 1974
            MK LLG+  +W++VEKG++E +++   S  +             AL+ +Y  +D+ GFEK
Sbjct: 1    MKTLLGSQSLWDIVEKGFQEPEEDEDQSVAQIAALEKTRVKDKSALYFLYNVVDESGFEK 60

Query: 1973 ISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKEGELVSDYFSRVLTVSNQ 1794
            I++  S+K+ W  L+V+++G   V+++RLQTLR EF+ L+M++ E VS+Y +R       
Sbjct: 61   IANTASSKEAWKILEVAHRGNHHVRQIRLQTLRGEFECLKMEDKEQVSEYITR------- 113

Query: 1793 LKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTIEQLLGSLQAHEEKKKK- 1617
                GE +    I+EKILRSL  +F+SI  +IEE+KDL  +++E+L GSL+AHE++++K 
Sbjct: 114  ----GEPMPANRIVEKILRSLTDDFESIACVIEESKDLSVLSVEELAGSLEAHEQRRRKM 169

Query: 1616 KGVADQLLKTEVQPTKNEENFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYMQXXX 1437
            KG  DQ L+ ++   +                                      Y     
Sbjct: 170  KGTLDQALQAQLDLNETRNTQGRRSGGQGRGDHGGRGKGRGDHGGSQPRSEVECY----- 224

Query: 1436 XXXXXXXXXXXXRYDKSQVQCYNCQKFGHYARDCRNPNTRVNERANLVEEKKEDGANVLL 1257
                          +     CYNC K+                     +EK +       
Sbjct: 225  ----KCGKHGHYAKESRSANCYNCGKY---------------------DEKSK------- 252

Query: 1256 LARNDNGEGQDDTWYLDTGASNHMCGRRTMFVELDESVSGNVSFGDDSKVAVKGKGTILI 1077
             A  D+    +  WYLDTGASNHMCG  + F EL +  +G VSFGDDSKVAVKG GTI  
Sbjct: 253  -AELDSSCLNNSVWYLDTGASNHMCGEESFFNELIKVKAGFVSFGDDSKVAVKGHGTIKF 311

Query: 1076 RLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDIHLKDNNLSIRDNMNNLIARVPMSR 897
              KDGR   I NVYYVP +K+NILS+GQ++EKG  + +KD  L ++D  + LIARV M +
Sbjct: 312  MQKDGRVGEIRNVYYVPELKSNILSMGQMMEKGNSVLMKDRVLYLKDKHDRLIARVEMKK 371

Query: 896  NRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFGGLELLSKKNMVRGLPCISHPDQL 717
            NRM+ L +     KCLK+  KD + +WH RFGHLNFGGL  LS+K +V GL  +    + 
Sbjct: 372  NRMYKLELNILQNKCLKLDVKDEAMMWHFRFGHLNFGGLAELSRKELVHGLRGVEFDKKF 431

Query: 716  CEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPIKPNSFGKSNYFLLFIDDFSRKTW 537
            CE C+LGK  R SFP  S  + ++ L LIH D+CGPI P SF    YF+ FIDDFSRKTW
Sbjct: 432  CEACVLGKHTRTSFPNSSEYKVKEQLGLIHTDLCGPISPASFSGKKYFISFIDDFSRKTW 491

Query: 536  VYFLKQKSXXXXXXXXXXXXXXXESGLHIKAMRTDRGGEFTSKEFQEFCEANGIRRPLTV 357
            VYFL++KS               E+   IKA+R+DRGGEFTS EF E+CE  GI+R LT 
Sbjct: 492  VYFLQEKSKAFEAFKKFKVMVEKETNKQIKALRSDRGGEFTSAEFMEYCEEQGIKRFLTA 551

Query: 356  PRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAEAVACAVYLSNRSPTRSVWGKTPQ 177
            P SPQQNGVAERKNRTIL+MVR+MLK K MP++FWAE V CA+Y+ NR P   +    PQ
Sbjct: 552  PYSPQQNGVAERKNRTILDMVRAMLKGKDMPEKFWAEVVQCAIYIQNRCPHSKLDDVIPQ 611

Query: 176  EAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSEKFIFIGYDNNSKGYKLYNPI 6
            EAW+G+KP I H ++FGS+A+ HVP + R+KLDD+S+K+I IGYD  +K YKLYNP+
Sbjct: 612  EAWSGQKPSIHHFKIFGSLAYGHVPAQLRTKLDDRSKKYILIGYDEKAKAYKLYNPV 668


>gb|KYP32069.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 954

 Score =  578 bits (1489), Expect = 0.0
 Identities = 282/377 (74%), Positives = 320/377 (84%), Gaps = 2/377 (0%)
 Frame = -2

Query: 1397 YDKSQVQCYNCQKFGHYARDCRNPN-TRVNERANLVEEK-KEDGANVLLLARNDNGEGQD 1224
            Y KS+++CYNC KFGHYA  CR PN  +V E+AN  EE+ +EDG   LLLA     +G+D
Sbjct: 208  YGKSRIKCYNCNKFGHYASKCRAPNKNKVEEKANYAEERCQEDGT--LLLAYKGQDKGED 265

Query: 1223 DTWYLDTGASNHMCGRRTMFVELDESVSGNVSFGDDSKVAVKGKGTILIRLKDGRHQFIS 1044
            + WYLD+GASNHMCG+R+MFVELDESV GNV+FGD+SKVAV+GKG +LIRLK+G HQFIS
Sbjct: 266  NQWYLDSGASNHMCGKRSMFVELDESVKGNVAFGDESKVAVEGKGNVLIRLKNGEHQFIS 325

Query: 1043 NVYYVPTMKTNILSLGQLLEKGYDIHLKDNNLSIRDNMNNLIARVPMSRNRMFLLNIQTD 864
            NVYYVP+MK+NILSLGQLLEKGYDI LK+NNLSIRDN +  IA+VPM+RNRMF+LNIQ+D
Sbjct: 326  NVYYVPSMKSNILSLGQLLEKGYDIQLKNNNLSIRDNTSRFIAKVPMTRNRMFVLNIQSD 385

Query: 863  VAKCLKMCYKDSSWLWHLRFGHLNFGGLELLSKKNMVRGLPCISHPDQLCEGCLLGKQFR 684
              +CLKMCYKD SWLWHLRFGHLNF GLELLSKK MVRGLPCI+HP+Q+CEGCLLGKQFR
Sbjct: 386  GPQCLKMCYKDQSWLWHLRFGHLNFKGLELLSKKAMVRGLPCITHPNQVCEGCLLGKQFR 445

Query: 683  QSFPKESNSRSQKPLELIHADVCGPIKPNSFGKSNYFLLFIDDFSRKTWVYFLKQKSXXX 504
             SFPKES+SR+QKPLELIH DVCGPIKP S GKSNYFL FIDDFSRKTWVYFLK+KS   
Sbjct: 446  LSFPKESDSRAQKPLELIHTDVCGPIKPRSLGKSNYFLFFIDDFSRKTWVYFLKEKSEVF 505

Query: 503  XXXXXXXXXXXXESGLHIKAMRTDRGGEFTSKEFQEFCEANGIRRPLTVPRSPQQNGVAE 324
                        E+GL IKA+R+DRGGEFTSKEFQ++CE NGIRR LTVPRSPQQNGVAE
Sbjct: 506  ENFKKFKDNVEKENGLLIKALRSDRGGEFTSKEFQKYCEDNGIRRQLTVPRSPQQNGVAE 565

Query: 323  RKNRTILNMVRSMLKSK 273
            RKNRTIL M RSMLKSK
Sbjct: 566  RKNRTILEMARSMLKSK 582



 Score =  236 bits (602), Expect = 9e-63
 Identities = 120/185 (64%), Positives = 145/185 (78%)
 Frame = -2

Query: 2204 FQVPQLKGNDFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXX 2025
            FQVP L  ++++NWS++M ALLGAHDVWEVVEKG+ E ++  +LS  +            
Sbjct: 8    FQVPMLTKSNYDNWSLRMVALLGAHDVWEVVEKGHTEPENVESLSQAQKDSLRDSRKRDK 67

Query: 2024 KALFLIYQALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKE 1845
            KAL LIYQ LD+D FEKIS   +AK+ W+KL++SYKG ++VKKVRLQTLR EF++L MKE
Sbjct: 68   KALCLIYQGLDEDTFEKISGVKTAKEAWEKLKISYKGADQVKKVRLQTLRGEFEALHMKE 127

Query: 1844 GELVSDYFSRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTI 1665
            GELVSDYFSRVLTV+N LKRNGEKL+DV IMEKILRSLD  F+ I TI EETKDLE M+I
Sbjct: 128  GELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKILRSLDPKFEHIVTITEETKDLEAMSI 187

Query: 1664 EQLLG 1650
            EQLLG
Sbjct: 188  EQLLG 192


>gb|ACN78973.1| copia-type polyprotein [Glycine max] gi|225016157|gb|ACN78980.1|
            copia-type polyprotein [Glycine max]
          Length = 1042

 Score =  567 bits (1462), Expect = 0.0
 Identities = 275/400 (68%), Positives = 323/400 (80%)
 Frame = -2

Query: 1202 GASNHMCGRRTMFVELDESVSGNVSFGDDSKVAVKGKGTILIRLKDGRHQFISNVYYVPT 1023
            G     CG +  FVELD+ V GNVSFGD SKV ++GKGTILI LKDG H+ I++VYYVP 
Sbjct: 31   GVEGVTCGCKEKFVELDKKVKGNVSFGDSSKVQIQGKGTILISLKDGAHKLITDVYYVPK 90

Query: 1022 MKTNILSLGQLLEKGYDIHLKDNNLSIRDNMNNLIARVPMSRNRMFLLNIQTDVAKCLKM 843
            +K+NILSLGQL+EKGY+IH+KD  L +RD  +NLIA+V MSRNRMF LNI+T+ AKCLK 
Sbjct: 91   LKSNILSLGQLVEKGYEIHMKDCCLWLRDKNSNLIAKVFMSRNRMFTLNIKTNEAKCLKA 150

Query: 842  CYKDSSWLWHLRFGHLNFGGLELLSKKNMVRGLPCISHPDQLCEGCLLGKQFRQSFPKES 663
              KD SW WH+RFGHLNFG L+ L ++ MV+G+P I+HP+QLCE CLLGK  R+SFPKE+
Sbjct: 151  SIKDESWCWHMRFGHLNFGALKSLGEEKMVKGMPQINHPNQLCEACLLGKHARRSFPKEA 210

Query: 662  NSRSQKPLELIHADVCGPIKPNSFGKSNYFLLFIDDFSRKTWVYFLKQKSXXXXXXXXXX 483
            NSR+++PL+L++ DVCGPI P S G + YFLLFIDD+SRKTWVYFLKQKS          
Sbjct: 211  NSRAKEPLQLVYTDVCGPINPPSCGNNKYFLLFIDDYSRKTWVYFLKQKSEAFVAFKNFK 270

Query: 482  XXXXXESGLHIKAMRTDRGGEFTSKEFQEFCEANGIRRPLTVPRSPQQNGVAERKNRTIL 303
                 ESG  IKA+R+DRGGEFTSKEF EFCE  GIRRPLTVPRSPQQNGVAERKNRTIL
Sbjct: 271  ALVEKESGYVIKALRSDRGGEFTSKEFNEFCEKYGIRRPLTVPRSPQQNGVAERKNRTIL 330

Query: 302  NMVRSMLKSKKMPKEFWAEAVACAVYLSNRSPTRSVWGKTPQEAWNGRKPGISHLRVFGS 123
            NM R MLK+K MPKEFWAEAVACAVYLSNRSPT++V  +TPQEAW+G KP + HLRVFGS
Sbjct: 331  NMTRCMLKAKNMPKEFWAEAVACAVYLSNRSPTKNVKDQTPQEAWSGVKPRVDHLRVFGS 390

Query: 122  IAHVHVPDEQRSKLDDKSEKFIFIGYDNNSKGYKLYNPIN 3
            IA+ HVPD+ R KLDD+SEK +FIGYD +SKGYKLYNP N
Sbjct: 391  IAYAHVPDQGRFKLDDRSEKHVFIGYDASSKGYKLYNPNN 430


>emb|CAN74303.1| hypothetical protein VITISV_032980 [Vitis vinifera]
          Length = 1283

 Score =  546 bits (1406), Expect = e-175
 Identities = 282/623 (45%), Positives = 380/623 (60%), Gaps = 1/623 (0%)
 Frame = -2

Query: 1871 EFDSLQMKEGELVSDYFSRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEE 1692
            EF++L+M+ GE V+DYFSR + + N+++ +G+K EDV I+EKILRS+   F+ +   IEE
Sbjct: 83   EFETLRMRSGESVTDYFSRTMAIXNKMRIHGDKTEDVTIVEKILRSMTPXFNFVVCSIEE 142

Query: 1691 TKDLETMTIEQLLGSLQAHEEKKKKKGVADQLLKTEVQPTKNEENFHXXXXXXXXXXXXX 1512
            + D++ ++I++L  SL  HE K  ++   +Q LK         EN               
Sbjct: 143  SHDIDELSIDELQSSLLVHERKFNQQEKEEQALKAST------ENHLATRGDRXRGRSRG 196

Query: 1511 XXXXXXXXXXXXXXXXXXNYMQXXXXXXXXXXXXXXXRYDKSQVQCYNCQKFGHYARDCR 1332
                              N  Q                 DKS V+CY C ++GHY  +CR
Sbjct: 197  RGRGNYDRGNQHQHQRQDNRFQGRGQGGNYSTTYKSXSTDKSNVECYRCHRYGHYKXECR 256

Query: 1331 -NPNTRVNERANLVEEKKEDGANVLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVEL 1155
             N N +  ER N  E+++E     LL+A + N     + WY+DTG SNHMCG ++ F +L
Sbjct: 257  TNMNKQGEERTNFAEKEEEVS---LLMACHANQXTHPNLWYIDTGCSNHMCGDKSAFSDL 313

Query: 1154 DESVSGNVSFGDDSKVAVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGY 975
            DE+   +V+FGD+SKV+V GKG++ I  K+   Q ISNV++VP +KTN+LS+ QL EKGY
Sbjct: 314  DETFRXSVTFGDNSKVSVMGKGSVXIHSKEKSDQIISNVFFVPDLKTNLLSVXQLQEKGY 373

Query: 974  DIHLKDNNLSIRDNMNNLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHL 795
            +I +KD    I+D    LIA+V M+ NRMF L +      C      D  WLWH R+GHL
Sbjct: 374  EIFIKDGVCRIQDEKLGLIAQVNMTTNRMFPLYLDNTTQNCFSTKLMDEGWLWHFRYGHL 433

Query: 794  NFGGLELLSKKNMVRGLPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVC 615
            NFGGL+ L +KNMV GLP I  P Q+CE C++GKQ R  FPK  + R  K LEL+H+D+C
Sbjct: 434  NFGGLKTLQQKNMVTGLPPIXTPSQICEECVVGKQHRYQFPKGKSWRXNKVLELVHSDIC 493

Query: 614  GPIKPNSFGKSNYFLLFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXESGLHIKAMRT 435
            GPI P S G   YF+ FI D+S KTWVYFL++KS               E+   IK  R+
Sbjct: 494  GPINPTSNGGKRYFITFIXDYSXKTWVYFLQEKSEAFSTFKSFKMLVEKEAXKPIKIFRS 553

Query: 434  DRGGEFTSKEFQEFCEANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEF 255
            D GGE+TS+EF  FCE +GI++ LT   SPQQNG + RKNRTILNMVR++L    +P+ F
Sbjct: 554  DXGGEYTSQEFVNFCENHGIQKQLTAAYSPQQNGXSXRKNRTILNMVRTILSKGHIPRSF 613

Query: 254  WAEAVACAVYLSNRSPTRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDD 75
            W EAV  ++++ NRSPT  V   TP EAWNGRKP ++H R+FG IA+ H+P ++R KLDD
Sbjct: 614  WPEAVIWSIHILNRSPTLVVQNVTPXEAWNGRKPSVNHFRIFGCIAYAHIPXQKRKKLDD 673

Query: 74   KSEKFIFIGYDNNSKGYKLYNPI 6
            K EK IF+G    SK YKLYNPI
Sbjct: 674  KGEKCIFLGVSEXSKAYKLYNPI 696


>emb|CAN71445.1| hypothetical protein VITISV_042489 [Vitis vinifera]
          Length = 1246

 Score =  538 bits (1387), Expect = e-173
 Identities = 293/732 (40%), Positives = 413/732 (56%), Gaps = 1/732 (0%)
 Frame = -2

Query: 2198 VPQLKGNDFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXXKA 2019
            +P+  G+ +++W++ M+  L + + W VV +G  +  D +T++                 
Sbjct: 11   IPRFDGH-YDHWNMLMENFLRSKEYWHVVSEGITKPTDNATMTQA--------------- 54

Query: 2018 LFLIYQALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKEGE 1839
                 Q  + DG  +     S K +  +   S+K  E            EF++L+M+ GE
Sbjct: 55   -----QRTELDGQRR-----STKVLQGQSGSSFKHFET-----------EFETLRMRSGE 93

Query: 1838 LVSDYFSRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTIEQ 1659
             V+DYFSR + + N++  +G+K EDV I+EKILRS+   F+ +   IEE+ D++ ++I++
Sbjct: 94   SVTDYFSRTMAIVNKMXIHGDKTEDVTIVEKILRSMTPXFNFVVCSIEESHDIDELSIDE 153

Query: 1658 LLGSLQAHEEKKKKKGVADQLLKTEVQPTKNEENFHXXXXXXXXXXXXXXXXXXXXXXXX 1479
            L  SL  HE K  ++   +Q LK         EN                          
Sbjct: 154  LQSSLLVHERKFNQQEKEEQALKAST------ENHLATRGDRGRGRSRGRGRGNYDRGNQ 207

Query: 1478 XXXXXXXNYMQXXXXXXXXXXXXXXXRYDKSQVQCYNCQKFGHYARDCR-NPNTRVNERA 1302
                   N  Q                 DKS V+CY C ++GHY  +CR N N +  ER 
Sbjct: 208  HQHQRQDNRFQGRGQGGNYSTTYKSRSTDKSNVECYRCHRYGHYKSECRTNMNKQGEERT 267

Query: 1301 NLVEEKKEDGANVLLLARNDNGEGQDDTWYLDTGASNHMCGRRTMFVELDESVSGNVSFG 1122
            N  E+++E     LL+A + N     + WY+DT  SNHMCG ++ F +LDE+   +V+FG
Sbjct: 268  NFAEKEEEVS---LLMACHANQGTHXNLWYIDTXCSNHMCGDKSAFSDLDETFRNSVTFG 324

Query: 1121 DDSKVAVKGKGTILIRLKDGRHQFISNVYYVPTMKTNILSLGQLLEKGYDIHLKDNNLSI 942
            D+SKV+V GKG++ I  K+   + ISNV++VP +KT +LS+GQL EKGY+I +KD    I
Sbjct: 325  DNSKVSVMGKGSVRIHSKEKSDKIISNVFFVPDLKTTLLSVGQLQEKGYEIFIKDGVCRI 384

Query: 941  RDNMNNLIARVPMSRNRMFLLNIQTDVAKCLKMCYKDSSWLWHLRFGHLNFGGLELLSKK 762
            +D    LIA+V M+ NRMF L +      C  +   D  WLWH R+GHLNF  L+ L  K
Sbjct: 385  QDEKLGLIAQVNMTTNRMFPLYLDNTTQNCFSVKLMDEGWLWHFRYGHLNFXXLKTLQXK 444

Query: 761  NMVRGLPCISHPDQLCEGCLLGKQFRQSFPKESNSRSQKPLELIHADVCGPIKPNSFGKS 582
            NMV GLP I    Q+CE C+ GKQ R  FPK  + R  K LEL+H+D+CGPI P S G  
Sbjct: 445  NMVTGLPXIQTXSQICEECVXGKQHRYQFPKGKSWRXNKVLELVHSDICGPINPTSNGGK 504

Query: 581  NYFLLFIDDFSRKTWVYFLKQKSXXXXXXXXXXXXXXXESGLHIKAMRTDRGGEFTSKEF 402
             YF+ FI D+S KTWVYFL++KS               E+   IK  R+D GGE+TS+EF
Sbjct: 505  RYFITFIXDYSWKTWVYFLQEKSEAFSTFKSFKMLVEKEAXKPIKIFRSDXGGEYTSQEF 564

Query: 401  QEFCEANGIRRPLTVPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAEAVACAVYL 222
              FCE +GI++ LT   SPQQNG +ERKN TILNMV ++L    +P+ FW EAV  ++++
Sbjct: 565  VNFCENHGIQKQLTAAYSPQQNGXSERKNXTILNMVXTILSKGHIPRSFWPEAVIWSIHI 624

Query: 221  SNRSPTRSVWGKTPQEAWNGRKPGISHLRVFGSIAHVHVPDEQRSKLDDKSEKFIFIGYD 42
             NRSPT  V   TP+EAWNG KP ++H R+FG IA+ H+PD++R+KLDDK EK IF+G  
Sbjct: 625  LNRSPTLVVQNVTPEEAWNGXKPSVNHFRIFGCIAYAHIPDQKRNKLDDKGEKCIFLGVS 684

Query: 41   NNSKGYKLYNPI 6
              SK YKLYNPI
Sbjct: 685  EMSKAYKLYNPI 696


>gb|KYP64949.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 907

 Score =  504 bits (1298), Expect = e-163
 Identities = 251/462 (54%), Positives = 316/462 (68%)
 Frame = -2

Query: 1391 KSQVQCYNCQKFGHYARDCRNPNTRVNERANLVEEKKEDGANVLLLARNDNGEGQDDTWY 1212
            +S+V+CY C K GHYA++CR+ N       NLVE    D  +    A  D+    +  WY
Sbjct: 243  RSEVECYKCGKLGHYAKECRSANCY-----NLVELPSSDEKSE---AELDSSCLNNSVWY 294

Query: 1211 LDTGASNHMCGRRTMFVELDESVSGNVSFGDDSKVAVKGKGTILIRLKDGRHQFISNVYY 1032
            LDTGASNHMCG  + F EL +  +G VSFGDDSKVAVKG GTI    KDGR   I NVYY
Sbjct: 295  LDTGASNHMCGEESFFNELIKVKAGFVSFGDDSKVAVKGHGTIKFMQKDGRVGEIRNVYY 354

Query: 1031 VPTMKTNILSLGQLLEKGYDIHLKDNNLSIRDNMNNLIARVPMSRNRMFLLNIQTDVAKC 852
            VP +K+NILS+GQ++EKG  + +KD  L ++D  + LIARV M +NRM+ L +     KC
Sbjct: 355  VPELKSNILSMGQMMEKGNSVLMKDRVLYLKDKHDRLIARVEMKKNRMYKLELNILQNKC 414

Query: 851  LKMCYKDSSWLWHLRFGHLNFGGLELLSKKNMVRGLPCISHPDQLCEGCLLGKQFRQSFP 672
            LK+  KD + +WH RFGHLNFGGL  LS+K +V GL  +    + CE C+LGK  R SFP
Sbjct: 415  LKLDVKDEAMMWHFRFGHLNFGGLAELSRKELVHGLRGVEFDKKFCEACVLGKHTRTSFP 474

Query: 671  KESNSRSQKPLELIHADVCGPIKPNSFGKSNYFLLFIDDFSRKTWVYFLKQKSXXXXXXX 492
              S  + ++ L LIH D+CGPI P SF    YF+ FIDDFSRKTWVYFL++KS       
Sbjct: 475  NSSEYKVKEQLGLIHTDLCGPISPASFSGKKYFISFIDDFSRKTWVYFLQEKSKAFEAFK 534

Query: 491  XXXXXXXXESGLHIKAMRTDRGGEFTSKEFQEFCEANGIRRPLTVPRSPQQNGVAERKNR 312
                    E+   IKA+R+DRGGEFTS EF E+CE  GI+R LT P SPQQNGVAERKNR
Sbjct: 535  KFKVMVEKETNKQIKALRSDRGGEFTSAEFMEYCEEQGIKRFLTAPYSPQQNGVAERKNR 594

Query: 311  TILNMVRSMLKSKKMPKEFWAEAVACAVYLSNRSPTRSVWGKTPQEAWNGRKPGISHLRV 132
            TIL+MVR+MLK K MP++FWAEAV CA+Y+ NR P   +   TPQEAW+G+KP I H ++
Sbjct: 595  TILDMVRAMLKGKNMPEKFWAEAVQCAIYIQNRCPHSKLDDVTPQEAWSGQKPSIHHFKI 654

Query: 131  FGSIAHVHVPDEQRSKLDDKSEKFIFIGYDNNSKGYKLYNPI 6
            FGS+A+ HVP + R+KLDD+S+K+I IGYD  +K YKLYNP+
Sbjct: 655  FGSLAYGHVPAQLRTKLDDRSKKYILIGYDEKAKAYKLYNPV 696



 Score =  185 bits (470), Expect = 2e-45
 Identities = 91/208 (43%), Positives = 144/208 (69%), Gaps = 2/208 (0%)
 Frame = -2

Query: 2198 VPQL-KGNDFENWSIKMKALLGAHDVWEVVEKGYEETKDESTLSSTEXXXXXXXXXXXXK 2022
            VPQL K  +++NW ++MK LLG+  +W++VEKGY E +++   S  +             
Sbjct: 3    VPQLSKKINYDNWCLQMKTLLGSQSLWDIVEKGYREPEEDEDQSVAQIATLEKTRVNDKS 62

Query: 2021 ALFLIYQALDDDGFEKISSATSAKQVWDKLQVSYKGEEKVKKVRLQTLRREFDSLQMKEG 1842
            AL+ +Y  +D+ GFEKI++A S+K+ W  L+V+++G   V+++RLQTLR EF+ L+M++ 
Sbjct: 63   ALYFLYNVVDESGFEKIANAASSKEAWKILEVAHRGNHCVRQIRLQTLRGEFECLKMEDK 122

Query: 1841 ELVSDYFSRVLTVSNQLKRNGEKLEDVVIMEKILRSLDANFDSITTIIEETKDLETMTIE 1662
            E VS+Y +RV  V+NQL RNGE +    I+EKILRSL  +F+SI  +IEE+KDL  +++E
Sbjct: 123  EQVSEYITRVEKVANQLGRNGESMPASRIVEKILRSLTDDFESIACVIEESKDLSVLSVE 182

Query: 1661 QLLGSLQAHEEKKKK-KGVADQLLKTEV 1581
            +L GSL+AHE++++K K   DQ L+ ++
Sbjct: 183  ELAGSLEAHEQRRRKMKNTLDQALQAQL 210