BLASTX nr result
ID: Rehmannia27_contig00005975
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia27_contig00005975
(4292 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_011081567.1| PREDICTED: RNA-dependent RNA polymerase 6 [S... 2084 0.0
ref|XP_012857917.1| PREDICTED: RNA-dependent RNA polymerase 6 [E... 2021 0.0
gb|AHL27586.1| RNA-dependent RNA polymerase 3 [Salvia miltiorrhiza] 1905 0.0
dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 1807 0.0
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 1806 0.0
emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 1806 0.0
gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata] 1806 0.0
gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa] 1805 0.0
ref|XP_009758053.1| PREDICTED: RNA-dependent RNA polymerase 6 [N... 1805 0.0
gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot... 1798 0.0
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V... 1782 0.0
ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 1769 0.0
ref|XP_015885879.1| PREDICTED: RNA-dependent RNA polymerase 6 [Z... 1763 0.0
ref|XP_015073465.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 1758 0.0
ref|XP_010319120.1| PREDICTED: RNA-dependent RNA polymerase 6 is... 1756 0.0
ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lyco... 1754 0.0
ref|XP_002515520.1| PREDICTED: RNA-dependent RNA polymerase 6 [R... 1748 0.0
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu... 1738 0.0
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu... 1732 0.0
ref|XP_012071453.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 1730 0.0
>ref|XP_011081567.1| PREDICTED: RNA-dependent RNA polymerase 6 [Sesamum indicum]
Length = 1205
Score = 2084 bits (5400), Expect = 0.0
Identities = 1009/1201 (84%), Positives = 1096/1201 (91%), Gaps = 3/1201 (0%)
Frame = -2
Query: 3922 MGSEIDGKNMVVTQISVGGLEKNVTAEMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI 3743
MGSEI ++VVTQISVGGLE VTA+ML+DYFE++IG+VWRCRLKTSSTPP+S PNYEI
Sbjct: 5 MGSEIGDNDLVVTQISVGGLENYVTAKMLLDYFEDNIGLVWRCRLKTSSTPPESNPNYEI 64
Query: 3742 DTEGIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILRGKPLKVSLGPENPHHLN 3563
D E +QRK DY K+EPHAFVHFAV HSA +ALDAA RGELIL KPLKVSLGP+NP+ +N
Sbjct: 65 DAESVQRKTDYVKIEPHAFVHFAVAHSAKAALDAAARGELILGRKPLKVSLGPQNPYRMN 124
Query: 3562 EKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFS 3383
E+RRTT PYKLSDV +E+GVMRSR+EF+VGWRGPRTGVDFLVDPFNG CKL FT++TAFS
Sbjct: 125 ERRRTTTPYKLSDVLIEIGVMRSRDEFLVGWRGPRTGVDFLVDPFNGTCKLHFTRNTAFS 184
Query: 3382 FKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLASSPLIYYRTADDDIKESV 3203
FKGE +SAVIKCNF+IEFLPREI EI YRDF SLIVLLQLASSPL+YYRTADDDI+ESV
Sbjct: 185 FKGEARSAVIKCNFKIEFLPREINEINQYRDFSSLIVLLQLASSPLVYYRTADDDIEESV 244
Query: 3202 PFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTKALEYLRKRRVPVIYESP 3023
PFDLLDDDDPWIRTTDFTPSGAIGRCNTYRIS RPR GP L KALEYLRK RVPV+ ESP
Sbjct: 245 PFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISARPRNGPSLFKALEYLRKLRVPVLDESP 304
Query: 3022 RHRLLVQDEPDFGVPMLDPFFCIQYKEGISFKVLFLVNAVMHKGIINQHQMSEKFFDLLR 2843
L VQDEPDFG+PM DPFFC+QYKEGISFK++FLVNAVMHKGIINQHQMSEKFFDLLR
Sbjct: 305 GRTLRVQDEPDFGMPMSDPFFCLQYKEGISFKIMFLVNAVMHKGIINQHQMSEKFFDLLR 364
Query: 2842 SRPEEVNTVALKHMCSYKHPMYDAFKALELVQKWLLNNPKLLERPREMNDIVEVRRLIIT 2663
S+PEE+N VALKHMCSYK P+YDA KAL+ VQKWLLNNPKLLERPREM+D+VEVRRLIIT
Sbjct: 365 SQPEELNIVALKHMCSYKRPVYDAIKALDFVQKWLLNNPKLLERPREMDDVVEVRRLIIT 424
Query: 2662 PAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNKNVLTYYVGPMARGITSN 2483
P+KAYCLPPEVELSNRVLRNY+NIADRFLRVTFMDEAM TLNKNVL YY P+ R ITSN
Sbjct: 425 PSKAYCLPPEVELSNRVLRNYKNIADRFLRVTFMDEAMQTLNKNVLMYYASPIVRDITSN 484
Query: 2482 SNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWM 2303
SNPQRT MFKRVKDIL NGFYLCGRKY+FLAFS+NQLRDRSAWFFAEDKNTGVANIK+WM
Sbjct: 485 SNPQRTNMFKRVKDILVNGFYLCGRKYTFLAFSANQLRDRSAWFFAEDKNTGVANIKSWM 544
Query: 2302 GKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAV 2123
GKFT RN+AKCAARMGQCFSSTYAT+EVP T+VNS+ PD+ERNGYVFSDGIGM+S LA+
Sbjct: 545 GKFTQRNVAKCAARMGQCFSSTYATIEVPLTKVNSQFPDVERNGYVFSDGIGMISADLAI 604
Query: 2122 EVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRTSMRKFESNHTILEICSW 1943
EVAEKLQ+ ++PPCAYQIRYAGYKGV+ARWP DG L+LR SM+KFESNH LEICSW
Sbjct: 605 EVAEKLQLGSNPPCAYQIRYAGYKGVVARWPAKDDGVRLYLRRSMKKFESNHKTLEICSW 664
Query: 1942 TRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGS 1763
TRFQPGFLNRQIVTLLSALEV+D IFWRMQETMVSRLD MLED+D AFDV+T SCTDQG+
Sbjct: 665 TRFQPGFLNRQIVTLLSALEVQDDIFWRMQETMVSRLDWMLEDSDTAFDVLTASCTDQGN 724
Query: 1762 TAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREK---ARIFVPSGRWLMGCLDELGVL 1592
TAA+MLSAGF+PQTEPHLRGMLTSIRAAQLGDL E+ ARIFVP GRWLMGCLDELG L
Sbjct: 725 TAALMLSAGFRPQTEPHLRGMLTSIRAAQLGDLSERATIARIFVPLGRWLMGCLDELGKL 784
Query: 1591 EHGQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPCLHPGDVRILEAVDA 1412
EHGQCFIQVS PS+E+ FVKHGS+FSE +KKLQVV GLVAIAKNPCLHPGDVRILEAVD
Sbjct: 785 EHGQCFIQVSNPSIEDCFVKHGSQFSETKKKLQVVTGLVAIAKNPCLHPGDVRILEAVDV 844
Query: 1411 PELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYAAGEA 1232
PELHHL+DCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSW PM+YA GE
Sbjct: 845 PELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWTPMEYAPGEV 904
Query: 1231 RELPRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLSDYGALDEKCIKLAELAAIAVD 1052
++LPR+V+HSDII+FFTKNMVNESLG ICNAHVVHADLS+YGALDEKCIKLAELAA AVD
Sbjct: 905 KQLPREVKHSDIIDFFTKNMVNESLGAICNAHVVHADLSEYGALDEKCIKLAELAATAVD 964
Query: 1051 FPKTGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGKLYRKIKDANDRGYEESSEQTF 872
FPKTGKIV MP ELKPK YPDFMGKEE Q+Y+S+KILGKLYRKIKDA DR +E S E TF
Sbjct: 965 FPKTGKIVNMPAELKPKTYPDFMGKEEFQSYNSSKILGKLYRKIKDAYDRDHEASREHTF 1024
Query: 871 ALENITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLGQYKVNREEELVTGHIWSMPKY 692
A ++I YDQDLE+TGS FI DAWNCKCSYDGQLIGLLGQYKVNREEE+VTGHIWSMPKY
Sbjct: 1025 ASDDIIYDQDLEVTGSTGFIGDAWNCKCSYDGQLIGLLGQYKVNREEEVVTGHIWSMPKY 1084
Query: 691 SSKKQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSDDEKNIMYEKKASAWYQVTYHE 512
SSKKQGELKERLKHAYSTLRKEFRKVFE M PEFDQL DDEKNIMYE+KASAWYQVTY +
Sbjct: 1085 SSKKQGELKERLKHAYSTLRKEFRKVFECMGPEFDQLWDDEKNIMYERKASAWYQVTYKD 1144
Query: 511 SWLKKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRRRRTENDISTKPIDSLGRYLADK 332
SW+KKSKEL VDDAGK+VMLSFAWIAADYLARIKI+RR EN ISTKPIDSLGRYLADK
Sbjct: 1145 SWVKKSKELHAVDDAGKSVMLSFAWIAADYLARIKIKRRMMENSISTKPIDSLGRYLADK 1204
Query: 331 I 329
I
Sbjct: 1205 I 1205
>ref|XP_012857917.1| PREDICTED: RNA-dependent RNA polymerase 6 [Erythranthe guttata]
gi|604300451|gb|EYU20269.1| hypothetical protein
MIMGU_mgv1a000386mg [Erythranthe guttata]
Length = 1196
Score = 2021 bits (5235), Expect = 0.0
Identities = 980/1199 (81%), Positives = 1083/1199 (90%), Gaps = 1/1199 (0%)
Frame = -2
Query: 3922 MGSEIDGKNMVVTQISVGGLEKNVTAEMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI 3743
MGSEI + M+VTQISVGGL NVTA+ML+DYFE++IG+VWRCRLKTSSTPP+SYPNYEI
Sbjct: 1 MGSEISDREMIVTQISVGGLGSNVTAKMLLDYFEDNIGLVWRCRLKTSSTPPESYPNYEI 60
Query: 3742 DTEGIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILRGKPLKVSLGPENPHHLN 3563
D + ++ DDY K++P+AFVHF V SA A++AA RG+L GK LKVSLGP+NP+ L+
Sbjct: 61 DIDSAKQSDDYVKIQPYAFVHFVVAESANKAVEAASRGDLRFAGKLLKVSLGPQNPYRLS 120
Query: 3562 EKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFS 3383
E+RRTT PYKLSD FVE+G +RSREE VVGWRGPR+GVDFLVDPF+G CKL +DTAF
Sbjct: 121 ERRRTTTPYKLSDAFVEIGSLRSREELVVGWRGPRSGVDFLVDPFSGTCKLHIKRDTAFC 180
Query: 3382 FKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLASSPLIYYRTADDDIKESV 3203
FKGE +SA+IKC+FRIEF PREIIEIKHYRDF SLI+L+QLASSPLIYYRTADDDI+E
Sbjct: 181 FKGEARSAIIKCDFRIEFFPREIIEIKHYRDFSSLIILIQLASSPLIYYRTADDDIEEPA 240
Query: 3202 PFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTKALEYLRKRRVPVIYESP 3023
DLLDDDDPWIRTTDFT GA GRCNTYRISVRP GP+L KAL+YLRKRRVPV+ E
Sbjct: 241 TCDLLDDDDPWIRTTDFTSGGAFGRCNTYRISVRPHNGPHLLKALDYLRKRRVPVLDERT 300
Query: 3022 RHRLLVQDEPDFGVPMLDPFFCIQYKEGISFKVLFLVNAVMHKGIINQHQMSEKFFDLLR 2843
R RL+VQDEPDFG+P+LDPF CIQYKEGISFKV+FL+NAVMHKGIINQHQ+SE+ D+ R
Sbjct: 301 RQRLVVQDEPDFGMPVLDPFLCIQYKEGISFKVMFLLNAVMHKGIINQHQISEQLLDMFR 360
Query: 2842 SRPEEVNTVALKHMCSYKHPMYDAFKALELVQKWLLNNPKLLERPREMNDIVEVRRLIIT 2663
+PE+VNTVALKHMCSYK P+YDAFKA+E VQ+WLL NPKLLERPR M+DIVEVRRLIIT
Sbjct: 361 RQPEDVNTVALKHMCSYKRPVYDAFKAVETVQRWLLKNPKLLERPRGMDDIVEVRRLIIT 420
Query: 2662 PAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNKNVLTYYVGPMARGITSN 2483
PAKAYCLPPEVELSNRVLR+Y+ +ADRFLRVTF DEAM TLNKN LTYYVGPM RGITS+
Sbjct: 421 PAKAYCLPPEVELSNRVLRHYKAVADRFLRVTFTDEAMSTLNKNALTYYVGPMVRGITSS 480
Query: 2482 SNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWM 2303
SNPQRTT+FKR+KDIL++GFYLCGRKYSFLAFSSNQLRDRSAWFFAEDK+ GVANIKNWM
Sbjct: 481 SNPQRTTIFKRIKDILHSGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKDIGVANIKNWM 540
Query: 2302 GKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAV 2123
G+FTNRN+AKCAARMGQCFSSTYATVEVPS QVNSKLPDIERN YVFSDGIGM+S LA+
Sbjct: 541 GRFTNRNVAKCAARMGQCFSSTYATVEVPSKQVNSKLPDIERNDYVFSDGIGMLSADLAM 600
Query: 2122 EVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRTSMRKFESNHTILEICSW 1943
EVAEKLQ++T+ P AYQIRYAGYKGV+A WP DG L LR SM+KF+SNHT+LEICSW
Sbjct: 601 EVAEKLQLTTNLPSAYQIRYAGYKGVVACWPAQSDGFRLSLRKSMKKFDSNHTVLEICSW 660
Query: 1942 TRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGS 1763
TRFQPGFLNRQI+TLLSALEV D IFWRMQETM+SRL++MLEDTD AFDV+T SCTDQG+
Sbjct: 661 TRFQPGFLNRQIITLLSALEVGDEIFWRMQETMISRLNQMLEDTDTAFDVLTSSCTDQGN 720
Query: 1762 TAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPSGRWLMGCLDELGVLEHG 1583
TAAIMLSAGFKPQTEPHLRGMLTSIR AQLGDLRE+ARIFVPSGRWLMGCLDELGVLEHG
Sbjct: 721 TAAIMLSAGFKPQTEPHLRGMLTSIRVAQLGDLRERARIFVPSGRWLMGCLDELGVLEHG 780
Query: 1582 QCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPEL 1403
QCFIQVS PSLE+ FVKHGS FS +KKL+V+KGLVAIAKNPCLHPGDVRILEAVD P L
Sbjct: 781 QCFIQVSNPSLEDCFVKHGSEFSGAKKKLEVIKGLVAIAKNPCLHPGDVRILEAVDCPGL 840
Query: 1402 HHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYAAGEAREL 1223
HHL+DCLVFPQKG+RPHTNEASGSDLDGDLYFVTWDENL+PPSKRSW PM+YA GE ++L
Sbjct: 841 HHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLMPPSKRSWTPMEYAPGEVKQL 900
Query: 1222 PRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLSDYGALDEKCIKLAELAAIAVDFPK 1043
PR+V+H+DIIEFFTKNMVNESLG ICNAHVVHAD S+YGALDEKCIKLAELAAIAVDFPK
Sbjct: 901 PREVKHTDIIEFFTKNMVNESLGAICNAHVVHADSSEYGALDEKCIKLAELAAIAVDFPK 960
Query: 1042 TGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGKLYRKIKDANDRGYEESSEQTFALE 863
TGKIVTMP ELKPKLYPDFMGK+E QTY S+KILGKLYRKIKD+N YEESSE T
Sbjct: 961 TGKIVTMPAELKPKLYPDFMGKDEFQTYKSSKILGKLYRKIKDSN-YDYEESSENTSV-- 1017
Query: 862 NITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLGQYKVNREEELVTGHIWSMPKYSSK 683
NI YDQ+LEI GS+SFI DAWNCKCSYDGQL GLLGQYKVN EEE+VTGHIWSMPKYSSK
Sbjct: 1018 NIAYDQELEIAGSESFITDAWNCKCSYDGQLTGLLGQYKVNSEEEVVTGHIWSMPKYSSK 1077
Query: 682 KQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSDDEKNIMYEKKASAWYQVTYHESWL 503
KQGELKERLKHAYSTLRK+FRKVFESMD EFDQLSDDEKN M+E+KASAWYQVTY+ESW+
Sbjct: 1078 KQGELKERLKHAYSTLRKDFRKVFESMDAEFDQLSDDEKNTMFERKASAWYQVTYNESWV 1137
Query: 502 KKSKELQMVDD-AGKTVMLSFAWIAADYLARIKIRRRRTENDISTKPIDSLGRYLADKI 329
KKSK+LQ+VDD GKTVMLSFAWIAADYLARIKIRRRR EN IS KPIDSLGRYLADKI
Sbjct: 1138 KKSKDLQVVDDEVGKTVMLSFAWIAADYLARIKIRRRRMENAISMKPIDSLGRYLADKI 1196
>gb|AHL27586.1| RNA-dependent RNA polymerase 3 [Salvia miltiorrhiza]
Length = 1195
Score = 1905 bits (4936), Expect = 0.0
Identities = 916/1195 (76%), Positives = 1048/1195 (87%)
Frame = -2
Query: 3913 EIDGKNMVVTQISVGGLEKNVTAEMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEIDTE 3734
++ +M+VTQIS+GGLE VTA++L DY E+++G+VWRCR+KTSSTP DSYPNYEIDTE
Sbjct: 3 QVGDNDMIVTQISIGGLEGYVTAKLLSDYLEDNVGLVWRCRVKTSSTPQDSYPNYEIDTE 62
Query: 3733 GIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILRGKPLKVSLGPENPHHLNEKR 3554
+QRK +YEKVEPHAFVHFAV S+ SA+ +G G+L+L LKV LGP+NP+ L E+R
Sbjct: 63 NVQRKGEYEKVEPHAFVHFAVAQSSASAMKLSGAGDLVLGRHILKVGLGPQNPYRLRERR 122
Query: 3553 RTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFSFKG 3374
RTT PYK+ V VE+G M+SR+EFVVGWRGPRTG+DFLVDPFNG C++ FTKDTAFS KG
Sbjct: 123 RTTTPYKVPGVTVEIGAMKSRDEFVVGWRGPRTGLDFLVDPFNGTCQILFTKDTAFSIKG 182
Query: 3373 EVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLASSPLIYYRTADDDIKESVPFD 3194
E + AVIKCNF++EF+PREI +IK Y+DF S++VL QLASSPL+YYRTADDDI+ESVPFD
Sbjct: 183 EARPAVIKCNFKMEFVPREINQIKRYKDFSSVVVLFQLASSPLLYYRTADDDIEESVPFD 242
Query: 3193 LLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTKALEYLRKRRVPVIYESPRHR 3014
LLDDDDPWIRTTDF PSGAIGR NTYRISVRPR+ L KAL YL+ RRVPV SP+ R
Sbjct: 243 LLDDDDPWIRTTDFVPSGAIGRSNTYRISVRPRHLSQLEKALGYLQNRRVPVENGSPQER 302
Query: 3013 LLVQDEPDFGVPMLDPFFCIQYKEGISFKVLFLVNAVMHKGIINQHQMSEKFFDLLRSRP 2834
L VQDEPDFGVPM DPFFC QYKEG++FKV+F+VNAV+HKGIINQHQ S++FFDLLRS+P
Sbjct: 303 LRVQDEPDFGVPMADPFFCFQYKEGLNFKVMFMVNAVVHKGIINQHQTSKQFFDLLRSQP 362
Query: 2833 EEVNTVALKHMCSYKHPMYDAFKALELVQKWLLNNPKLLERPREMNDIVEVRRLIITPAK 2654
EE+N VALKH+ SYK P+YDA++AL+ V KWL+ NPKLL+RP +M+DIVEVRRL+ITP+K
Sbjct: 363 EELNLVALKHIYSYKRPVYDAYRALDSVTKWLIKNPKLLQRPDQMDDIVEVRRLVITPSK 422
Query: 2653 AYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNKNVLTYYVGPMARGITSNSNP 2474
AYCLPPEVELSNRVLRNY+NI+DRFLRVTFMDEAM TLNKNVLTYY P+ R ITSN NP
Sbjct: 423 AYCLPPEVELSNRVLRNYKNISDRFLRVTFMDEAMQTLNKNVLTYYAAPIVREITSNLNP 482
Query: 2473 QRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWMGKF 2294
QRTTMFKRV+DIL GFYLCGR+YSFLAFSSNQLRDRSAWFFAED+ T V IK WMGKF
Sbjct: 483 QRTTMFKRVRDILYQGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRKTSVVCIKTWMGKF 542
Query: 2293 TNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAVEVA 2114
TNRN+AKCAARMGQCFSSTYATVEVPS Q NSK D+ERNGY+FSDGIGM+S LA EVA
Sbjct: 543 TNRNVAKCAARMGQCFSSTYATVEVPSAQANSK-SDVERNGYIFSDGIGMISADLAKEVA 601
Query: 2113 EKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRTSMRKFESNHTILEICSWTRF 1934
EKLQ+ T PCAYQIRYAGYKGV+A WP +G L LR SM+KF+S+HT LEICSWTRF
Sbjct: 602 EKLQLRTKLPCAYQIRYAGYKGVVACWPAENNGHRLQLRPSMKKFDSDHTTLEICSWTRF 661
Query: 1933 QPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGSTAA 1754
QPGFLNRQIVTLLS+LEV D FWRMQE M++RLD +LED DMAFDV+T SC+DQG+TAA
Sbjct: 662 QPGFLNRQIVTLLSSLEVCDENFWRMQELMIARLDGILEDPDMAFDVLTASCSDQGNTAA 721
Query: 1753 IMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPSGRWLMGCLDELGVLEHGQCF 1574
+ML+AGF+ TEPHLRGML SIR +QLGDLREK+RIFV SGRWLMGCLDELGVLE+GQCF
Sbjct: 722 MMLAAGFRSHTEPHLRGMLMSIRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCF 781
Query: 1573 IQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPELHHL 1394
IQVS PSLE+ F HGS FSE +K L+V+KGLV IAKNPCLHPGDVRILEAVD LHHL
Sbjct: 782 IQVSKPSLEDCFANHGSEFSETKKDLEVIKGLVVIAKNPCLHPGDVRILEAVDVRGLHHL 841
Query: 1393 HDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYAAGEARELPRD 1214
+DCLVFPQKG+RPH NEASGSDLDGDLYFVTWD+ LIPPSKRSW+PMDY GE + PR+
Sbjct: 842 YDCLVFPQKGERPHANEASGSDLDGDLYFVTWDDTLIPPSKRSWLPMDYEPGEVKLKPRE 901
Query: 1213 VRHSDIIEFFTKNMVNESLGTICNAHVVHADLSDYGALDEKCIKLAELAAIAVDFPKTGK 1034
V HSDIIEFFTKNMVNESLGTICNAHVVHADLS+YGALDEKCIKLAELAAIAVDFPKTGK
Sbjct: 902 VTHSDIIEFFTKNMVNESLGTICNAHVVHADLSEYGALDEKCIKLAELAAIAVDFPKTGK 961
Query: 1033 IVTMPPELKPKLYPDFMGKEELQTYHSNKILGKLYRKIKDANDRGYEESSEQTFALENIT 854
IVTMPP+LKP++YPDFMGKEELQ+Y S KILGKLYR+++DA + YE SS+ T+ + I+
Sbjct: 962 IVTMPPDLKPQMYPDFMGKEELQSYKSTKILGKLYRRVRDAYNLDYEASSQLTYPAD-IS 1020
Query: 853 YDQDLEITGSKSFIADAWNCKCSYDGQLIGLLGQYKVNREEELVTGHIWSMPKYSSKKQG 674
YDQ+LE+TGSK FIADAW+CKCSYDGQL GLLGQYKVN E+E+VTGHIWSMPK+SSKKQG
Sbjct: 1021 YDQELEVTGSKDFIADAWSCKCSYDGQLAGLLGQYKVNSEDEVVTGHIWSMPKFSSKKQG 1080
Query: 673 ELKERLKHAYSTLRKEFRKVFESMDPEFDQLSDDEKNIMYEKKASAWYQVTYHESWLKKS 494
ELKERLKHAY+ LRK++RKVFE M P FDQL D EKN++YE+KASAWYQVTY ++W+KKS
Sbjct: 1081 ELKERLKHAYNALRKDYRKVFECMAPGFDQLPDHEKNVLYEQKASAWYQVTYQDNWVKKS 1140
Query: 493 KELQMVDDAGKTVMLSFAWIAADYLARIKIRRRRTENDISTKPIDSLGRYLADKI 329
KELQ +DD+GKTV+LSFAWIAADYLARIKIRRRR EN IS KPIDSLGRYLADKI
Sbjct: 1141 KELQELDDSGKTVLLSFAWIAADYLARIKIRRRRMENAISGKPIDSLGRYLADKI 1195
>dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 1807 bits (4681), Expect = 0.0
Identities = 882/1198 (73%), Positives = 1005/1198 (83%)
Frame = -2
Query: 3922 MGSEIDGKNMVVTQISVGGLEKNVTAEMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI 3743
MGSE K +VVTQIS GG + +V A+ML +Y E +G VWRCRLK SSTPPDSYP Y+I
Sbjct: 1 MGSEGSEKELVVTQISGGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI 60
Query: 3742 DTEGIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILRGKPLKVSLGPENPHHLN 3563
D E +QR ++YEKV PHAFVHFA SA AL AAG ELIL KPL VSLGPENP+ LN
Sbjct: 61 DAEKVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120
Query: 3562 EKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFS 3383
++RRTT+P+K SDV VE+GV+ S+++FVVGWRGPRTGVDF VDPFNG CK+ FTKDTAFS
Sbjct: 121 QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGTCKILFTKDTAFS 180
Query: 3382 FKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLASSPLIYYRTADDDIKESV 3203
F+GE + A+IKCNF+IEF+ REI EIK +DF SL++LLQLASSPL++YRTADDDI+ESV
Sbjct: 181 FRGEARHAIIKCNFKIEFMVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESV 240
Query: 3202 PFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTKALEYLRKRRVPVIYESP 3023
FDLLDDDD WIRTTD T SGAIGRCNTYRIS+RPR GP KA+ Y RVP++
Sbjct: 241 AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300
Query: 3022 RHRLLVQDEPDFGVPMLDPFFCIQYKEGISFKVLFLVNAVMHKGIINQHQMSEKFFDLLR 2843
R L V+DEPDFGV M DPFFC Q EGISFKV+FLVNAV+HKGI+NQHQM+ +FF LLR
Sbjct: 301 RKMLRVKDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359
Query: 2842 SRPEEVNTVALKHMCSYKHPMYDAFKALELVQKWLLNNPKLLERPREMNDIVEVRRLIIT 2663
SR EEVN+ ALKHM SYK P+ DA + L +QKWLL NPKLL+R E++DIVEVRRL+IT
Sbjct: 360 SRQEEVNSAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLDRTGELDDIVEVRRLVIT 419
Query: 2662 PAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNKNVLTYYVGPMARGITSN 2483
P KAYCLPP VELSNRVLRNY+++ADRFLRVTFMDE M LN+NVLTYY + R ITSN
Sbjct: 420 PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479
Query: 2482 SNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWM 2303
SNPQRT +F+RVK IL+ GF+LCGRKYSFLAFS+NQLRDRSAWFFAED V I +WM
Sbjct: 480 SNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539
Query: 2302 GKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAV 2123
G+F+NRN+AKCAARMGQCFSSTYATVEVPS +VNS+LPDIERNGYVFSDGIGM+S LA+
Sbjct: 540 GRFSNRNVAKCAARMGQCFSSTYATVEVPSREVNSELPDIERNGYVFSDGIGMISADLAI 599
Query: 2122 EVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRTSMRKFESNHTILEICSW 1943
EVAEKL +S +PP AYQIRYAG KGV+A WP DG L LR SM+KF+SNHTILEICSW
Sbjct: 600 EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659
Query: 1942 TRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGS 1763
TRFQPGFLNRQIVTLLS+L+V+DGIFW MQ+ M+S LD+ML D+D+AFDV+T SC + G+
Sbjct: 660 TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719
Query: 1762 TAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPSGRWLMGCLDELGVLEHG 1583
TAAIMLSAGFKPQ+EPHLRGML+SIRA+QLGDLR KARIFVPSGRWLMGCLDELG LE G
Sbjct: 720 TAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779
Query: 1582 QCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPEL 1403
QCFIQVS PSLE FVKHG +FS+ ++ LQVVKGLV IAKNPCLHPGDVRILEAVD P L
Sbjct: 780 QCFIQVSSPSLENCFVKHGPKFSDIKQNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSL 839
Query: 1402 HHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYAAGEAREL 1223
HL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPSK+SWIPM+Y E ++L
Sbjct: 840 SHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899
Query: 1222 PRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLSDYGALDEKCIKLAELAAIAVDFPK 1043
R V H DII+FF+KNMV ESLG ICNAHVVHADLS++GALDEKC+KLAELAA+AVDFPK
Sbjct: 900 GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959
Query: 1042 TGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGKLYRKIKDANDRGYEESSEQTFALE 863
TGK+VTMP +LKPK+YPDFMGKEE Q+Y S KILGKLYR++KD D E S+ +
Sbjct: 960 TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPK 1019
Query: 862 NITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLGQYKVNREEELVTGHIWSMPKYSSK 683
+I YD LEI GS +FI DAWN KCSYDGQL GLLGQYKVNREEE+VTGHIWSMPKYS+K
Sbjct: 1020 DIPYDSTLEILGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079
Query: 682 KQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSDDEKNIMYEKKASAWYQVTYHESWL 503
KQGELKERLKHAY+TLRKEFR VFE MDP+FD L DDEKN MYE+KASAWYQVTYH W+
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYHPHWV 1139
Query: 502 KKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRRRRTENDISTKPIDSLGRYLADKI 329
+S ELQ+ D TVMLSFAWIAADYLARIKIR RR + STKPI+SLGRYL D I
Sbjct: 1140 ARSLELQLPDAVSNTVMLSFAWIAADYLARIKIRHRRLQYSDSTKPINSLGRYLVDNI 1197
>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 1806 bits (4679), Expect = 0.0
Identities = 881/1198 (73%), Positives = 1007/1198 (84%)
Frame = -2
Query: 3922 MGSEIDGKNMVVTQISVGGLEKNVTAEMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI 3743
MGSE K +VVTQISVGG + +V A+ML +Y E +G VWRCRLK SSTPPDSYP Y+I
Sbjct: 1 MGSEGCEKELVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI 60
Query: 3742 DTEGIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILRGKPLKVSLGPENPHHLN 3563
D E +QR ++YEKV PHAFVHFA SA AL AAG ELIL KPL VSLGPENP+ LN
Sbjct: 61 DAEKVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120
Query: 3562 EKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFS 3383
++RRTT+P+K SDV VE+GV+ S+++FVVGWRGPRTGVDFLVDPFNG CK+ FTKDTAFS
Sbjct: 121 QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFS 180
Query: 3382 FKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLASSPLIYYRTADDDIKESV 3203
F+GE + A+IKCNF+IEFL REI EIK +DF SL++L QLASSPL++YRTADDDI+ESV
Sbjct: 181 FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEESV 240
Query: 3202 PFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTKALEYLRKRRVPVIYESP 3023
FDLLDDDD WIRTTD T SGAIGRCNTYRIS+RPR GP KA+ Y RRVP++
Sbjct: 241 AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCN 300
Query: 3022 RHRLLVQDEPDFGVPMLDPFFCIQYKEGISFKVLFLVNAVMHKGIINQHQMSEKFFDLLR 2843
R L V+DEPDFGV M DPFFC Q EGISF+VLFLVNAV+HKGI+NQHQM+ +FF LLR
Sbjct: 301 RKMLRVKDEPDFGVSMSDPFFCFQ-NEGISFRVLFLVNAVLHKGIVNQHQMANEFFYLLR 359
Query: 2842 SRPEEVNTVALKHMCSYKHPMYDAFKALELVQKWLLNNPKLLERPREMNDIVEVRRLIIT 2663
S EEVN+ ALKHM SYK P+ DA + L +QKWLL NPKLL+R E++DIVEVRRL+IT
Sbjct: 360 SHQEEVNSAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLDRTGELDDIVEVRRLVIT 419
Query: 2662 PAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNKNVLTYYVGPMARGITSN 2483
P KAYCLPP VELSNRVLRNY+++ADRFLRVTFMDE M LN+NVLTYY + R ITSN
Sbjct: 420 PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479
Query: 2482 SNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWM 2303
SNPQRT +F+RVK IL+ GF+LCGRKYSFLAFS+NQLRDRSAWFFAED V I +WM
Sbjct: 480 SNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539
Query: 2302 GKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAV 2123
G+F+NRN+AKCAARMGQCFSSTYATVEVPS++VNS+LPDIERNGYVFSDGIGM+S LA+
Sbjct: 540 GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAI 599
Query: 2122 EVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRTSMRKFESNHTILEICSW 1943
EVAEKL +S +PP AYQIRYAG KGV+A WP DG L LR SM+KF+SNHTILEICSW
Sbjct: 600 EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659
Query: 1942 TRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGS 1763
TRFQPGFLNRQIVTLLS+L+V+DGIFW MQ+ M+S LD+ML D+D+AFDV+T SC + G+
Sbjct: 660 TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719
Query: 1762 TAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPSGRWLMGCLDELGVLEHG 1583
TAA+MLSAGFKPQ+EPHLRGML+SIRA+QLGDLR KARIFVPSGRWLMGCLDELG LE G
Sbjct: 720 TAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779
Query: 1582 QCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPEL 1403
QCFIQVS PSLE FVKHG +FS+ +K LQVVKGLV IAKNPCLHPGDVRILEAVD P L
Sbjct: 780 QCFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSL 839
Query: 1402 HHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYAAGEAREL 1223
HL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPSK+SWIPM+Y E ++L
Sbjct: 840 SHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899
Query: 1222 PRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLSDYGALDEKCIKLAELAAIAVDFPK 1043
R V H DII+FF+KNMV ESLG ICNAHVVHADLS++GALDEKC+KLAELAA+AVDFPK
Sbjct: 900 GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959
Query: 1042 TGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGKLYRKIKDANDRGYEESSEQTFALE 863
TGK+VTMP +LKPK+YPDFMGKEE Q+Y S KILGKLYR++KD D E S+ +
Sbjct: 960 TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPK 1019
Query: 862 NITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLGQYKVNREEELVTGHIWSMPKYSSK 683
+I YD LEI GS +FI DAWN KCSYDGQL GLLGQYKVNREEE+VTG+IWSMPKY++K
Sbjct: 1020 DIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGYIWSMPKYNAK 1079
Query: 682 KQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSDDEKNIMYEKKASAWYQVTYHESWL 503
KQGELKERLKHAY+TLRKEFR VFE M+P+FD L DDEKN MYE+KASAWYQVTYH W+
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYHPHWV 1139
Query: 502 KKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRRRRTENDISTKPIDSLGRYLADKI 329
+S ELQ+ D TVMLSFAWIAADYLARIKIR RR + STKPI+SLGRYL D I
Sbjct: 1140 ARSLELQLADAVSNTVMLSFAWIAADYLARIKIRHRRLQYSDSTKPINSLGRYLVDNI 1197
>emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 1806 bits (4678), Expect = 0.0
Identities = 883/1198 (73%), Positives = 1005/1198 (83%)
Frame = -2
Query: 3922 MGSEIDGKNMVVTQISVGGLEKNVTAEMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI 3743
MGSE K++VVTQISVGG + +V A+ML +Y E +G VWRCRLK S+TPPDSYP Y+I
Sbjct: 1 MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDI 60
Query: 3742 DTEGIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILRGKPLKVSLGPENPHHLN 3563
D E + R DYEKV PHAFVHFA SA AL AAG ELIL KPL VSLGPENP+ LN
Sbjct: 61 DAERVHRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120
Query: 3562 EKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFS 3383
++RRTT+P+K SDV VE+GV+ S+++FVVGWRGPRTGVDFLVDPFNG CK+ FTKDTAFS
Sbjct: 121 QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFS 180
Query: 3382 FKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLASSPLIYYRTADDDIKESV 3203
F+GE + A+IKCNF+IEFL REI EIK +DF SL++L QLASSPL++YRTADDDI+ESV
Sbjct: 181 FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEESV 240
Query: 3202 PFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTKALEYLRKRRVPVIYESP 3023
FDLLDDDD WIRTTD T SGAIGRCNTYRIS+RPR GP KA+ Y RRVP++
Sbjct: 241 AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCN 300
Query: 3022 RHRLLVQDEPDFGVPMLDPFFCIQYKEGISFKVLFLVNAVMHKGIINQHQMSEKFFDLLR 2843
R L V+DEPDFGV M DPFFC Q EGISFKV+FLVNAV+HKGI+NQHQM+ +FF LLR
Sbjct: 301 RKMLRVKDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359
Query: 2842 SRPEEVNTVALKHMCSYKHPMYDAFKALELVQKWLLNNPKLLERPREMNDIVEVRRLIIT 2663
SR EEVN ALKHM SYK P+ DA + L +QKWLL NPKLLER E++DIVEVRRL+IT
Sbjct: 360 SRQEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLERTGELDDIVEVRRLVIT 419
Query: 2662 PAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNKNVLTYYVGPMARGITSN 2483
P KAYCLPP VELSNRVLRNY+++ADRFLRVTFMDE M LN+NVLTYY + R ITSN
Sbjct: 420 PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479
Query: 2482 SNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWM 2303
SNPQRT +F+RVK IL+ GF+LCGRKYSFLAFS+NQLRDRSAWFFAED V I +WM
Sbjct: 480 SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539
Query: 2302 GKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAV 2123
G+F+NRN+AKCAARMGQCFSSTYATVEVPS++VNS+LPDIERNGYVFSDGIGM+S LA+
Sbjct: 540 GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAI 599
Query: 2122 EVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRTSMRKFESNHTILEICSW 1943
EVAEKL ++ +PP AYQIRYAGYKGV+A WP DG L LR SM+KF+SNHTILEICSW
Sbjct: 600 EVAEKLHLNVNPPSAYQIRYAGYKGVVACWPTKNDGILLSLRPSMKKFDSNHTILEICSW 659
Query: 1942 TRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGS 1763
TRFQPGFLNRQIVTLLS+L+V+DGIFW MQ+ M+S LD+ML D+D+AFDV+T SC + G+
Sbjct: 660 TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719
Query: 1762 TAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPSGRWLMGCLDELGVLEHG 1583
TAA+MLSAGFKPQ+EPHLRGML+SIRA+QLGDLR KARIFVPSGRWLMGCLDELG LE G
Sbjct: 720 TAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779
Query: 1582 QCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPEL 1403
QCFIQVS PSLE FVKHG +FS+ +K LQVVKGLV IAKNPCLHPGDVRILEAVD P L
Sbjct: 780 QCFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSL 839
Query: 1402 HHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYAAGEAREL 1223
HL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPSK+SWIPM+Y E ++L
Sbjct: 840 SHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899
Query: 1222 PRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLSDYGALDEKCIKLAELAAIAVDFPK 1043
R V H DII+FF+KNMV ESLG ICNAHVVHADLS++GALDEKC+KLAELAA+AVDFPK
Sbjct: 900 GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959
Query: 1042 TGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGKLYRKIKDANDRGYEESSEQTFALE 863
TGK+VTMP +LKPK+YPDFMGKEE Q+Y S KILGKLYR++KD D E S+ +
Sbjct: 960 TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPK 1019
Query: 862 NITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLGQYKVNREEELVTGHIWSMPKYSSK 683
+I YD L I GS FI DAWN KCSYDGQL GLLGQYKVNREEE+VTGHIWSMPKYS+K
Sbjct: 1020 DIPYDTTLVIPGSTVFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079
Query: 682 KQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSDDEKNIMYEKKASAWYQVTYHESWL 503
KQGELKERLKHAY+TLRKEFR VFE MDP+FD L DDEKN MYE+KASAWYQVTY+ W+
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNPHWV 1139
Query: 502 KKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRRRRTENDISTKPIDSLGRYLADKI 329
+S ELQ+ D TVMLSFAWIAADYLARIKIR R + STKPI+SLGRYL DKI
Sbjct: 1140 ARSLELQLPDAISSTVMLSFAWIAADYLARIKIRHRGLQYSDSTKPINSLGRYLVDKI 1197
>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
Length = 1197
Score = 1806 bits (4678), Expect = 0.0
Identities = 880/1198 (73%), Positives = 1005/1198 (83%)
Frame = -2
Query: 3922 MGSEIDGKNMVVTQISVGGLEKNVTAEMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI 3743
MGSE K++VVTQISVGG + +V A+ML +Y E +G VWRCRLK SSTPPDSYP +++
Sbjct: 1 MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTFDV 60
Query: 3742 DTEGIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILRGKPLKVSLGPENPHHLN 3563
D E +QR DYEKV PHAFVHFA SA AL AAG ELIL KPL VSLGPENP+ LN
Sbjct: 61 DAERVQRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120
Query: 3562 EKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFS 3383
++RRTT+P+K SDV +E+GV+ S+++FVVGWRGPRTGVDFLVDPFNG CK+ FTKDTAFS
Sbjct: 121 QRRRTTMPFKFSDVSIEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGACKILFTKDTAFS 180
Query: 3382 FKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLASSPLIYYRTADDDIKESV 3203
F+GE + A+IKCNF+IEFL REI EIK +DF SL++LLQLASSPL++YRTADDDI+ESV
Sbjct: 181 FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESV 240
Query: 3202 PFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTKALEYLRKRRVPVIYESP 3023
FDLLDDDD WIRTTD T SGAIGRCNTYRIS+RPR GP KA+ Y RVP++
Sbjct: 241 AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300
Query: 3022 RHRLLVQDEPDFGVPMLDPFFCIQYKEGISFKVLFLVNAVMHKGIINQHQMSEKFFDLLR 2843
R L V+DEPDFGV M DPFFC Q EGISFKV+FLVNAV+HKGI+NQHQM+ +FF LLR
Sbjct: 301 RKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359
Query: 2842 SRPEEVNTVALKHMCSYKHPMYDAFKALELVQKWLLNNPKLLERPREMNDIVEVRRLIIT 2663
S EEVN ALKHM SYK P+ DA + L ++KWLL NPKLLER E++DIVEVRRL+IT
Sbjct: 360 SHQEEVNLAALKHMFSYKWPVNDAIQKLVGIRKWLLKNPKLLERTGELDDIVEVRRLVIT 419
Query: 2662 PAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNKNVLTYYVGPMARGITSN 2483
P KAYCLPP VELSNRVLRNY+++ADRFLRVTFMDE M LN+NVLTYY + R ITSN
Sbjct: 420 PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479
Query: 2482 SNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWM 2303
SNPQRT +F+RVK IL+ GF+LCGRKYSFLAFS+NQLRDRSAWFFAED V I +WM
Sbjct: 480 SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539
Query: 2302 GKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAV 2123
G+F+NRN+AKCAARMGQCFSSTYATVEVPS++VNS+LPDIERNGYVFSDGIGM+S LAV
Sbjct: 540 GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAV 599
Query: 2122 EVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRTSMRKFESNHTILEICSW 1943
EVAEKL +S +PP AYQIRYAG KGV+A WP DG L LR SM+KF+SNHTILEICSW
Sbjct: 600 EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659
Query: 1942 TRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGS 1763
TRFQPGFLNRQIVTLLS+L+V+DGIFW MQ+ M+S LD+ML D+D+AFDV+T SC + G+
Sbjct: 660 TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719
Query: 1762 TAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPSGRWLMGCLDELGVLEHG 1583
TAAIMLSAGFKPQ+EPHLRGML+SIRA+QLGDLR KARIFVPSGRWLMGCLDELG LE G
Sbjct: 720 TAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779
Query: 1582 QCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPEL 1403
QCFIQVS PSLE F+KHG +FS+ +K LQVVKGLV IAKNPCLHPGDVRILEAVD P L
Sbjct: 780 QCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGL 839
Query: 1402 HHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYAAGEAREL 1223
HHL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPSK+SWIPM+Y E +++
Sbjct: 840 HHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQM 899
Query: 1222 PRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLSDYGALDEKCIKLAELAAIAVDFPK 1043
R V H DII+FF+KNMV ESLG ICNAHVVHADLS++GALDEKC+KLAELAA+AVDFPK
Sbjct: 900 GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959
Query: 1042 TGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGKLYRKIKDANDRGYEESSEQTFALE 863
TGK+VTMP +LKPK+YPDFMGKEE Q+Y S KILGKLYR++KD D E S+
Sbjct: 960 TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELVPN 1019
Query: 862 NITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLGQYKVNREEELVTGHIWSMPKYSSK 683
+I YD LEI GS +FI DAWN KCSYDGQL GLLGQYKVNREEE+VTGHIWSMPKYS+K
Sbjct: 1020 DIPYDSSLEIPGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079
Query: 682 KQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSDDEKNIMYEKKASAWYQVTYHESWL 503
KQGELKERLKHAY+TLRKEFR VFE M+P+FD L DDEKN MYE+KASAWYQVTY+ W+
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYNPHWV 1139
Query: 502 KKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRRRRTENDISTKPIDSLGRYLADKI 329
+S ELQ+ D TVMLSFAWIAADYLARIKIR R + STKPI+SLGRYL D I
Sbjct: 1140 ARSLELQLPDAVSSTVMLSFAWIAADYLARIKIRHRGLQYSDSTKPINSLGRYLVDNI 1197
>gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
Length = 1197
Score = 1805 bits (4676), Expect = 0.0
Identities = 882/1198 (73%), Positives = 1003/1198 (83%)
Frame = -2
Query: 3922 MGSEIDGKNMVVTQISVGGLEKNVTAEMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI 3743
MGSE K +VVTQISVGG + +V A+ML +Y E +G VWRCRLK SSTPPDSYP Y+I
Sbjct: 1 MGSEGSEKELVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI 60
Query: 3742 DTEGIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILRGKPLKVSLGPENPHHLN 3563
D E +QR ++YEKV PHAFVHFA SA AL AAG EL+L KPL VSLGPENP+ LN
Sbjct: 61 DAERVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELVLGKKPLIVSLGPENPYRLN 120
Query: 3562 EKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFS 3383
++RRTT+P+K SDV VE+GV+ S+ +FVVGWRGPRTGVDFLVDPFNG CK+ FTKDT FS
Sbjct: 121 QRRRTTMPFKFSDVSVEMGVLVSKHDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTVFS 180
Query: 3382 FKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLASSPLIYYRTADDDIKESV 3203
F+GE + A+IKCNF+IEFL REI EIK +DF SL++LLQLASSPL++YRTADDDI+ESV
Sbjct: 181 FRGEARHAIIKCNFKIEFLVREINEIKKCKDFMSLVILLQLASSPLVFYRTADDDIEESV 240
Query: 3202 PFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTKALEYLRKRRVPVIYESP 3023
FDLLDDDD WIRTTD T SGAIGRCNTYRIS+RPR GP KA+ Y RVP++
Sbjct: 241 AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300
Query: 3022 RHRLLVQDEPDFGVPMLDPFFCIQYKEGISFKVLFLVNAVMHKGIINQHQMSEKFFDLLR 2843
R L V+DEPDFGV M DPFFC Q EGISFKVLFL NAV+HKGI+NQHQM +FF LLR
Sbjct: 301 RKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVLFLANAVLHKGIVNQHQMINEFFYLLR 359
Query: 2842 SRPEEVNTVALKHMCSYKHPMYDAFKALELVQKWLLNNPKLLERPREMNDIVEVRRLIIT 2663
S EEVN ALKHM SYK P+ DA + L +QKWLL NPKLLER E++DIVEVRRL+IT
Sbjct: 360 SHQEEVNLAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLERTGELDDIVEVRRLVIT 419
Query: 2662 PAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNKNVLTYYVGPMARGITSN 2483
P KAYCLPP VELSNRVLRNY+++ADRFLRVTFMDE M LN+NVLTYY + R ITSN
Sbjct: 420 PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479
Query: 2482 SNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWM 2303
SNPQRT +F+RVK IL+ GF+LCGRKYSFLAFS+NQLRDRSAWFFAED V I +WM
Sbjct: 480 SNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539
Query: 2302 GKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAV 2123
G+F+NRN+AKCAARMGQCFSSTYATVEVPS++VNS+LPDIERNGYVFSDGIGM+S LA+
Sbjct: 540 GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAI 599
Query: 2122 EVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRTSMRKFESNHTILEICSW 1943
EVAEKL +S +PP AYQIRYAG KGV+A WP DG L LR SM+KF+SNHTILEICSW
Sbjct: 600 EVAEKLHLSVNPPAAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659
Query: 1942 TRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGS 1763
TRFQPGFLNRQIVTLLS+L+V+DGIFW MQ+ M++ LD+ML D+D+AFDV+T SC + G+
Sbjct: 660 TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMIAGLDKMLVDSDVAFDVITASCAEAGN 719
Query: 1762 TAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPSGRWLMGCLDELGVLEHG 1583
TAA+MLSAGFKPQ+EPHLRGML+SIRA+QLGDLR KARIFVPSGRWLMGCLDELG LE G
Sbjct: 720 TAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779
Query: 1582 QCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPEL 1403
QCFIQVS PSLE FVKHGS+FS+ +K LQVVKGLV IAKNPCLHPGDVRILEAVD P L
Sbjct: 780 QCFIQVSSPSLENCFVKHGSKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSL 839
Query: 1402 HHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYAAGEAREL 1223
HL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDEN+IPPSK+SWIPM+Y E ++L
Sbjct: 840 SHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENIIPPSKKSWIPMNYEPAEVKQL 899
Query: 1222 PRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLSDYGALDEKCIKLAELAAIAVDFPK 1043
R V H DII+FF+KNMV ESLG ICNAHVVHADLS++GALDEKC+KLAELAA+AVDFPK
Sbjct: 900 GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959
Query: 1042 TGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGKLYRKIKDANDRGYEESSEQTFALE 863
TGK+VTMP +LKPK+YPDFMGKEE Q+Y S KILGKLYR++KD D E S+ +
Sbjct: 960 TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPK 1019
Query: 862 NITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLGQYKVNREEELVTGHIWSMPKYSSK 683
+I YD LEI GS +FI DAWN KCSYDGQL GLLGQYKVNREEE+VTGHIWSMPKYS+K
Sbjct: 1020 DIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079
Query: 682 KQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSDDEKNIMYEKKASAWYQVTYHESWL 503
KQGELKERLKHAY+TLRKEFR VFE M+P+FD L DDEKN MYE+KASAWYQVTYH W+
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYHPHWV 1139
Query: 502 KKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRRRRTENDISTKPIDSLGRYLADKI 329
+S ELQ+ D TVMLSFAWIAADYLARIKIR R STKPI+SLGRYLADKI
Sbjct: 1140 ARSLELQIPDAVSSTVMLSFAWIAADYLARIKIRHRGLPYSDSTKPINSLGRYLADKI 1197
>ref|XP_009758053.1| PREDICTED: RNA-dependent RNA polymerase 6 [Nicotiana sylvestris]
Length = 1197
Score = 1805 bits (4674), Expect = 0.0
Identities = 879/1198 (73%), Positives = 1004/1198 (83%)
Frame = -2
Query: 3922 MGSEIDGKNMVVTQISVGGLEKNVTAEMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI 3743
MGSE K++VVTQISVGG + +V A+ML +Y E +G VWRCRLK S+TPPDSYP Y+I
Sbjct: 1 MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDI 60
Query: 3742 DTEGIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILRGKPLKVSLGPENPHHLN 3563
D E + R DYEKV PHAFVHFA SA AL AAG ELIL KPL VSLGPENP+ LN
Sbjct: 61 DAERVHRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120
Query: 3562 EKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFS 3383
++RRTT+P++ SDV VE+GV+ S+++FVVGWRGPRTGVDF VDPFNG C++ FTKDTAFS
Sbjct: 121 QRRRTTMPFRFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGACRILFTKDTAFS 180
Query: 3382 FKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLASSPLIYYRTADDDIKESV 3203
F+GE + A+IKCNF+IEF+ REI EIK +DF SL++LLQLASSPL++YRTADDDI+ESV
Sbjct: 181 FRGEARHAIIKCNFKIEFMVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESV 240
Query: 3202 PFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTKALEYLRKRRVPVIYESP 3023
FDLLDDDD WIRTTD T SGAIGRCNTYRIS+RPR GP KA+ Y RVP++
Sbjct: 241 AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300
Query: 3022 RHRLLVQDEPDFGVPMLDPFFCIQYKEGISFKVLFLVNAVMHKGIINQHQMSEKFFDLLR 2843
R L V+DEPDFGV M DPFFC Q EGISFKV+FLVNAV+HKGI+NQHQM+ +FF LLR
Sbjct: 301 RKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359
Query: 2842 SRPEEVNTVALKHMCSYKHPMYDAFKALELVQKWLLNNPKLLERPREMNDIVEVRRLIIT 2663
SR EEVN ALKHM SYK P+ DA + L +QKWL+ NPKLLER E++DIVEVRRL+IT
Sbjct: 360 SRQEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLMKNPKLLERTGELDDIVEVRRLVIT 419
Query: 2662 PAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNKNVLTYYVGPMARGITSN 2483
P KAYCLPP VELSNRVLRNY+++ADRFLRVTFMDE M LN+NVLTYY + R ITSN
Sbjct: 420 PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479
Query: 2482 SNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWM 2303
SNPQRT +F+RVK IL+ GF+LCGRKYSFLAFS+NQLRDRSAWFFAED V I +WM
Sbjct: 480 SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539
Query: 2302 GKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAV 2123
G+F+NRN+AKCAARMGQCFSSTYATVEVPS +VNS+LPDIERNGYVFSDGIGM+S LA+
Sbjct: 540 GRFSNRNVAKCAARMGQCFSSTYATVEVPSREVNSELPDIERNGYVFSDGIGMISADLAI 599
Query: 2122 EVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRTSMRKFESNHTILEICSW 1943
EVAEKL +S +PP AYQIRYAG KGV+A WP DG L LR SM+KF+SNHTILEICSW
Sbjct: 600 EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659
Query: 1942 TRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGS 1763
TRFQPGFLNRQIVTLLS+L+V+DGIFW MQ+ M+S LD+ML D+D+AFDV+T SC + G+
Sbjct: 660 TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719
Query: 1762 TAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPSGRWLMGCLDELGVLEHG 1583
TAAIMLSAGFKPQ+EPHLRGML+SIRA+QLGDLR KARIFVPSGRWLMGCLDELG LE G
Sbjct: 720 TAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779
Query: 1582 QCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPEL 1403
QCFIQVS PSLE F+KHG +FS+ ++ LQVVKGLV IAKNPCLHPGDVRILEAVD P L
Sbjct: 780 QCFIQVSSPSLENCFIKHGPKFSDIKQNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGL 839
Query: 1402 HHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYAAGEAREL 1223
HHL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPSK+SWIPM+Y E ++L
Sbjct: 840 HHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899
Query: 1222 PRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLSDYGALDEKCIKLAELAAIAVDFPK 1043
R V H DII+FF+KNMV ESLG ICNAHVVHADLS++GALDEKC+KLAELAA+AVDFPK
Sbjct: 900 GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959
Query: 1042 TGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGKLYRKIKDANDRGYEESSEQTFALE 863
TGK+VTMP +LKPK+YPDFMGKEE Q+Y S KILGKLYR++KD D E S+
Sbjct: 960 TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELVPN 1019
Query: 862 NITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLGQYKVNREEELVTGHIWSMPKYSSK 683
+I YD LEI GS +FI DAWN KCSYDGQL GLLGQYKVNREEE+VTGHIWSMPKYS+K
Sbjct: 1020 DIPYDSSLEIPGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079
Query: 682 KQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSDDEKNIMYEKKASAWYQVTYHESWL 503
KQGELKERLKHAY+TLRKEFR VFE MDP+FD L DDEKN MYE+KASAWYQVTY+ W+
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNPHWV 1139
Query: 502 KKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRRRRTENDISTKPIDSLGRYLADKI 329
+S ELQ+ D TVMLSFAWIAADYLARIKIR R + STKPI+SLGRYL DKI
Sbjct: 1140 ARSLELQLPDAISSTVMLSFAWIAADYLARIKIRHRGLQYSDSTKPINSLGRYLVDKI 1197
>gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
Length = 1197
Score = 1798 bits (4657), Expect = 0.0
Identities = 876/1198 (73%), Positives = 1000/1198 (83%)
Frame = -2
Query: 3922 MGSEIDGKNMVVTQISVGGLEKNVTAEMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI 3743
MGSE K++VVTQISVGG + +V A+ML +Y E +G VWRCRLK S+TPPDSYP Y++
Sbjct: 1 MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDV 60
Query: 3742 DTEGIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILRGKPLKVSLGPENPHHLN 3563
D + R DYEKV PHAFVHFA SA AL AAG LIL KPL VSLGPENP+ LN
Sbjct: 61 DAARVHRMKDYEKVVPHAFVHFASSESAKYALAAAGGNGLILGKKPLIVSLGPENPYRLN 120
Query: 3562 EKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFS 3383
++RRTT+P+K SDV VE+GV+ S+++FVVGWRGPRTGVDF VDPFNG CK+ FTKDTAFS
Sbjct: 121 QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGACKILFTKDTAFS 180
Query: 3382 FKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLASSPLIYYRTADDDIKESV 3203
F+GE K A+IKCNF+IEF+ REI EIK ++DF SL++LLQLASSPL++YRTADDDI+ESV
Sbjct: 181 FRGEAKHAIIKCNFKIEFMVREINEIKKFKDFTSLVILLQLASSPLVFYRTADDDIEESV 240
Query: 3202 PFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTKALEYLRKRRVPVIYESP 3023
FDLLDDDD WIRTTD T SGAIGRCNTYRIS+RPR GP KA+ Y RVP++
Sbjct: 241 AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300
Query: 3022 RHRLLVQDEPDFGVPMLDPFFCIQYKEGISFKVLFLVNAVMHKGIINQHQMSEKFFDLLR 2843
R L V+DEPDFGV M DPFFC Q EGISFKV+FLVNAV+HKGI+NQHQM+ +FF LLR
Sbjct: 301 RKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359
Query: 2842 SRPEEVNTVALKHMCSYKHPMYDAFKALELVQKWLLNNPKLLERPREMNDIVEVRRLIIT 2663
S EEVN ALKHM SYK P+ DA + L +QKWLL NPKLLER E++DIVEVRRL+IT
Sbjct: 360 SHQEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLERTGELDDIVEVRRLVIT 419
Query: 2662 PAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNKNVLTYYVGPMARGITSN 2483
P KAYCLPP VELSNRVLRNY+++ADRFLRVTFMDE M LN+NVLTYY + R ITSN
Sbjct: 420 PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479
Query: 2482 SNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWM 2303
SNPQRT +F+RVK IL+ GF+LCGRKYSFLAFS+NQLRDRSAWFFAED V I +WM
Sbjct: 480 SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539
Query: 2302 GKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAV 2123
G+F+NRN+AKCAARMGQCFSSTYATVEVPS++VNS+LPDIERNGYVFSDGIGM+S LA+
Sbjct: 540 GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAL 599
Query: 2122 EVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRTSMRKFESNHTILEICSW 1943
EVAEKL +S +PP AYQIRYAG KGV+A WP DG L LR SM+KF+SNHTILEICSW
Sbjct: 600 EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGILLSLRPSMKKFDSNHTILEICSW 659
Query: 1942 TRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGS 1763
TRFQPGFLNRQIVTLLS+L+V+DGIFW MQ+ M+S L++ML D+D+AFDV+T SC + G+
Sbjct: 660 TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLNKMLVDSDVAFDVITASCAEAGN 719
Query: 1762 TAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPSGRWLMGCLDELGVLEHG 1583
TAAIMLSAGFKPQ+EPHLRGML+SIRA+QLGDLR KARIFVPSGRWLMGCLDELG LE G
Sbjct: 720 TAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779
Query: 1582 QCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPEL 1403
QCFIQVS PSLE F+KHG +FS+ +K LQVVKGLV IAKNPCLHPGDVRILEAVD P L
Sbjct: 780 QCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGL 839
Query: 1402 HHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYAAGEAREL 1223
HHL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPSK+SWIPM+Y E ++L
Sbjct: 840 HHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899
Query: 1222 PRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLSDYGALDEKCIKLAELAAIAVDFPK 1043
R V H DII+FF+KNMV ESLG ICNAHVVHADLS++GALDEKC+KLAELAA+AVDFPK
Sbjct: 900 GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959
Query: 1042 TGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGKLYRKIKDANDRGYEESSEQTFALE 863
TGK+VTMP +LKPK+YPDFMGKEE Q+Y S KILGKLYR++KD D E S+
Sbjct: 960 TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELVPN 1019
Query: 862 NITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLGQYKVNREEELVTGHIWSMPKYSSK 683
+I YD LEI GS F+ DAWNCKCSYDGQL GLLGQYKVNREEE+VTGHIWSMPKYS+K
Sbjct: 1020 DIPYDSSLEIPGSTVFMGDAWNCKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079
Query: 682 KQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSDDEKNIMYEKKASAWYQVTYHESWL 503
KQGELKERLKHAY+ LRKEFR VFE MDP+FD L DDEKN MYE+KASAWYQVTY+ W+
Sbjct: 1080 KQGELKERLKHAYNMLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNPHWV 1139
Query: 502 KKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRRRRTENDISTKPIDSLGRYLADKI 329
+S ELQ+ D TVMLSFAWIAADYLARI IR R + STKPI+SLGRYL D I
Sbjct: 1140 ARSLELQLPDAVSSTVMLSFAWIAADYLARINIRHRGLQYSDSTKPINSLGRYLVDNI 1197
>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
gi|731385864|ref|XP_010648660.1| PREDICTED: RNA-dependent
RNA polymerase 6 [Vitis vinifera]
gi|731385866|ref|XP_010648661.1| PREDICTED: RNA-dependent
RNA polymerase 6 [Vitis vinifera]
Length = 1197
Score = 1782 bits (4615), Expect = 0.0
Identities = 871/1200 (72%), Positives = 1015/1200 (84%), Gaps = 2/1200 (0%)
Frame = -2
Query: 3922 MGSEIDGKNMVVTQISVGGLEKNVTAEMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI 3743
M SE K+MVVTQIS+GG ++ VTA L Y E++IG V RCRLKTSSTPP+SYP++EI
Sbjct: 1 MESEGSEKDMVVTQISIGGFDQYVTATELTYYLEDTIGSVDRCRLKTSSTPPESYPDFEI 60
Query: 3742 -DTEGIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILRGKPLKVSLGPENPHHL 3566
DT I+R +DY+KVEPHAFVHF +AT ALDAAG+ EL L GKPLKVSLGPE P HL
Sbjct: 61 IDTAKIERTEDYKKVEPHAFVHFVSPEAATWALDAAGKSELFLHGKPLKVSLGPETPFHL 120
Query: 3565 NEKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAF 3386
N++RRTT P+K DV +E+G++ SR+E+ GWRGP +GVDFLVDPF+G CK FTKDTAF
Sbjct: 121 NQRRRTTFPFKFPDVRLEIGILVSRDEYFAGWRGPSSGVDFLVDPFDGTCKFLFTKDTAF 180
Query: 3385 SFKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLASSPLIYYRTADDDIKES 3206
SFKG K AVIKCNF++EFL REI E++ RD SLI+LLQL+SSP +YYRTADDDI+E+
Sbjct: 181 SFKGMPKHAVIKCNFKVEFLVREINEVRQRRDMSSLILLLQLSSSPFVYYRTADDDIEET 240
Query: 3205 VPFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTKALEYLRKRRVPVIYES 3026
VPFDLLDDDDPWIRTTDFT SGAIGRCN+YRIS+ PRYG L KA++YLR RRV V+ +S
Sbjct: 241 VPFDLLDDDDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAKLKKAMDYLRARRVNVLEDS 300
Query: 3025 PRHRLLVQDEPDFGVPMLDPFFCIQYKEGISFKVLFLVNAVMHKGIINQHQMSEKFFDLL 2846
P+ +L V+DEPDFG+PM DPFFCIQ+KEGI F+V+FLVNAVMHKGIINQHQ+S+KFFDLL
Sbjct: 301 PKWQLRVRDEPDFGLPMSDPFFCIQHKEGIDFRVMFLVNAVMHKGIINQHQLSDKFFDLL 360
Query: 2845 RSRPEEVNTVALKHMCSYKHPMYDAFKALELVQKWLLNNPKLLERPREMNDIVEVRRLII 2666
RS+ +++N ALKH+CSY+HP++DA++ L+LV KWLL NPKLL+ P+E++DIVEVRRL+I
Sbjct: 361 RSQQKDINIAALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDDIVEVRRLVI 420
Query: 2665 TPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNKNVLTYYVGPMARGITS 2486
TP+KAYCLPPEVELSNRVLRNY+ ++DRFLRVTFMDE M T+N NVL YYV P+ + ITS
Sbjct: 421 TPSKAYCLPPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPIVKVITS 480
Query: 2485 NSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNW 2306
NS PQ+T +FKRVK IL +GFYLCGRKYSFLAFSSNQLRDRSAWFFAEDK T V IK+W
Sbjct: 481 NSFPQKTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSVRAIKSW 540
Query: 2305 MGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLA 2126
MGKFTNRN+AKCAARMGQCFSSTYATVEVPS +V +LPDI+RNGY FSDGIG + LA
Sbjct: 541 MGKFTNRNVAKCAARMGQCFSSTYATVEVPSWEV-KELPDIKRNGYDFSDGIGKIVPDLA 599
Query: 2125 VEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRTSMRKFESNHTILEICS 1946
+EVAEKL++ P AYQIRYAG KGV+A WP+ DG L R SM KF S+HTILEICS
Sbjct: 600 MEVAEKLKLE-GTPSAYQIRYAGCKGVVACWPSDNDGIRLSWRPSMNKFLSDHTILEICS 658
Query: 1945 WTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQG 1766
WTRFQPGFLNRQIVTLLSAL V D IFW+MQE+M+S+L++ML DTD+AFDV+ SC +QG
Sbjct: 659 WTRFQPGFLNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDVLIASCAEQG 718
Query: 1765 STAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPSGRWLMGCLDELGVLEH 1586
+TAAIMLSAGFKPQTEPHL+GMLT IRAAQ LREKARIFVPSGRWLMGCLDELGVLE
Sbjct: 719 NTAAIMLSAGFKPQTEPHLQGMLTCIRAAQFWGLREKARIFVPSGRWLMGCLDELGVLEQ 778
Query: 1585 GQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPE 1406
GQCFIQVS PSLE F+KHGSRFS +K L+V+KG+VAIAKNPCLHPGDVRILEAVDAP
Sbjct: 779 GQCFIQVSSPSLENCFLKHGSRFSA-QKNLKVIKGIVAIAKNPCLHPGDVRILEAVDAPG 837
Query: 1405 LHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYAAGEARE 1226
L HL DCLVFPQKGDRPH+NEASGSDLDGDLYFVTW+E LIPPSK+SW PM Y + EA+
Sbjct: 838 LEHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWEETLIPPSKQSWPPMQYDSAEAKA 897
Query: 1225 LPRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLSDYGALDEKCIKLAELAAIAVDFP 1046
L R+V DII+FFTKNMVNE+LG ICNAHVVHAD S+YGALDE C+ LAE AA AVDFP
Sbjct: 898 LAREVTSLDIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAERAATAVDFP 957
Query: 1045 KTGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGKLYRKIKDANDRGYEESSEQTFAL 866
KTGK+VT+PP LKPK+YPDFMGKEE QTY SNKILGK+YR+IKDA + ESSEQ F
Sbjct: 958 KTGKLVTLPPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSESSEQIFGA 1017
Query: 865 ENITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLGQYKVNREEELVTGHIWSMPKYSS 686
+ + +D+DL I GS FI DAW KCSYDGQL GLLGQYKV REEE+VTGH+WSMPKY S
Sbjct: 1018 DKVPFDEDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSMPKYKS 1077
Query: 685 KKQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSDDEKNIMYEKKASAWYQVTYHESW 506
+KQGEL ERLKHAYS+L+KEFR++FE M+ +FDQL+DDEKN +YE+KASAWYQVTYH +W
Sbjct: 1078 RKQGELTERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWYQVTYHPTW 1137
Query: 505 LKKSKELQMVDDA-GKTVMLSFAWIAADYLARIKIRRRRTENDISTKPIDSLGRYLADKI 329
+KKS ELQ D+ G+ VMLSFAWI ADYLARIKIRR+ T N S+KPI+SL R+L D+I
Sbjct: 1138 VKKSLELQNPDEVFGERVMLSFAWITADYLARIKIRRKGTGNVDSSKPINSLARFLVDRI 1197
>ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Solanum tuberosum]
gi|565360032|ref|XP_006346785.1| PREDICTED: RNA-dependent
RNA polymerase 6-like [Solanum tuberosum]
Length = 1198
Score = 1769 bits (4581), Expect = 0.0
Identities = 861/1198 (71%), Positives = 996/1198 (83%)
Frame = -2
Query: 3922 MGSEIDGKNMVVTQISVGGLEKNVTAEMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI 3743
MGSE K++VVTQISVGG +V A+ML + E+ +G VWRCRLKTSSTPPDSYP Y+I
Sbjct: 1 MGSEGSEKDLVVTQISVGGFSNDVNAKMLSECLEDQVGQVWRCRLKTSSTPPDSYPTYDI 60
Query: 3742 DTEGIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILRGKPLKVSLGPENPHHLN 3563
D E ++R ++Y KVEPHAFVHFA SA +AL AA R EL L KPLKVSLGPENP ++N
Sbjct: 61 DVENVRRMNNYIKVEPHAFVHFASSESAQNALAAARRDELFLEEKPLKVSLGPENPFNMN 120
Query: 3562 EKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFS 3383
++RRT +P+K SDV VE+GV+ S ++FVVGWRGP +GV+FLVDPFNG CK+ FT+DTAF
Sbjct: 121 KRRRTIMPFKFSDVGVEIGVLVSNDDFVVGWRGPHSGVNFLVDPFNGTCKILFTRDTAFC 180
Query: 3382 FKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLASSPLIYYRTADDDIKESV 3203
FKGE K AVIKCNF+IEFL REI EI +DF SL++LLQL SSPL++YRTADDDI+ESV
Sbjct: 181 FKGEGKHAVIKCNFKIEFLLREINEINECKDFASLVLLLQLTSSPLVFYRTADDDIEESV 240
Query: 3202 PFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTKALEYLRKRRVPVIYESP 3023
FDLLDDDD WIRTTD T SGAIGR NTYRIS+RPR GP L KA+ Y R+ RVPV+ +
Sbjct: 241 AFDLLDDDDQWIRTTDITCSGAIGRFNTYRISIRPRNGPSLKKAMNYFRESRVPVVEQGN 300
Query: 3022 RHRLLVQDEPDFGVPMLDPFFCIQYKEGISFKVLFLVNAVMHKGIINQHQMSEKFFDLLR 2843
R L V+DEPDFGV + +PFFC Q EGISFKVLFLVNAV+ KGI+NQHQM+ +FF LLR
Sbjct: 301 RQMLRVRDEPDFGVSLSEPFFCFQNHEGISFKVLFLVNAVLQKGIVNQHQMTAEFFSLLR 360
Query: 2842 SRPEEVNTVALKHMCSYKHPMYDAFKALELVQKWLLNNPKLLERPREMNDIVEVRRLIIT 2663
E VN ALKH+ SYK P+ DA + L VQKWL NP LLER +++D+VEVRRL+IT
Sbjct: 361 KHQEGVNLAALKHIFSYKRPVNDAIQKLASVQKWLFKNPNLLERTGQLDDVVEVRRLVIT 420
Query: 2662 PAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNKNVLTYYVGPMARGITSN 2483
P KAYCLPP VELSNRVLR Y++++DRFLRVTFMDE M LN+NVLTYY + R ITS+
Sbjct: 421 PTKAYCLPPTVELSNRVLRKYKHVSDRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSS 480
Query: 2482 SNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWM 2303
SNPQRT +F+RVK IL+ GFYLCGR+YSFLAFS+NQLRDRSAWFFAE V NI NWM
Sbjct: 481 SNPQRTGIFQRVKSILSKGFYLCGRRYSFLAFSANQLRDRSAWFFAEAPEIRVPNIINWM 540
Query: 2302 GKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAV 2123
GKF NRN+AKCAARMGQCFSSTYATVEV ++VNS+LPDIERNGYVFSDGIGMMS L++
Sbjct: 541 GKFGNRNVAKCAARMGQCFSSTYATVEVLPSEVNSELPDIERNGYVFSDGIGMMSADLSI 600
Query: 2122 EVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRTSMRKFESNHTILEICSW 1943
EVA KLQ+S +PPCAYQIRYAG KGV+A WP KDG L LR SM+KF+SNHTILEICSW
Sbjct: 601 EVAAKLQLSVNPPCAYQIRYAGCKGVVACWPAEKDGIRLSLRPSMKKFDSNHTILEICSW 660
Query: 1942 TRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGS 1763
TR QPGFLNRQI+TLLS+LEV+D +FW MQ+ M+S+LD++L D+D+AFDV+T SC + G+
Sbjct: 661 TRLQPGFLNRQIITLLSSLEVKDEMFWEMQKEMLSKLDKILVDSDVAFDVITASCAEAGN 720
Query: 1762 TAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPSGRWLMGCLDELGVLEHG 1583
TAAIMLSAGFKPQ+EPHLRGML SIRAAQLGDLR K R+FVPSGRWLMGCLDEL LE G
Sbjct: 721 TAAIMLSAGFKPQSEPHLRGMLASIRAAQLGDLRNKTRMFVPSGRWLMGCLDELRKLEQG 780
Query: 1582 QCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPEL 1403
QCFIQVS PSLE FVKHG +FSE +K LQV+KGLV IAKNPCLHPGDVRILEAVD P L
Sbjct: 781 QCFIQVSSPSLETCFVKHGPKFSEIKKNLQVIKGLVVIAKNPCLHPGDVRILEAVDVPGL 840
Query: 1402 HHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYAAGEAREL 1223
HHL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPSK+SW+PMDYA EA++L
Sbjct: 841 HHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWMPMDYAPAEAKQL 900
Query: 1222 PRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLSDYGALDEKCIKLAELAAIAVDFPK 1043
R V+H+DII+FF+KNMV ESLG ICNAHVVHADLS++GALDEKC+KLAELAA+AVDFPK
Sbjct: 901 GRQVQHTDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 960
Query: 1042 TGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGKLYRKIKDANDRGYEESSEQTFALE 863
TGK+VTMP +LKPK+YPDFMGKE QTY S KILGKLYR++ D D ESS F +
Sbjct: 961 TGKLVTMPFDLKPKMYPDFMGKEPFQTYESKKILGKLYRQVIDVYDAEGGESSGLEFVPK 1020
Query: 862 NITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLGQYKVNREEELVTGHIWSMPKYSSK 683
+I YD ++EI G + FI DAWN KCSYDGQL GLLGQYKVN EEE+VTGHIWSMPKYS+K
Sbjct: 1021 DIPYDTNIEILGYEDFIDDAWNHKCSYDGQLNGLLGQYKVNGEEEVVTGHIWSMPKYSAK 1080
Query: 682 KQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSDDEKNIMYEKKASAWYQVTYHESWL 503
KQGELKERLKHAY+TLRKEFR VFE M+P+FD L DEKN MYE+KASAWY+VTYH W+
Sbjct: 1081 KQGELKERLKHAYNTLRKEFRNVFEQMEPDFDMLPVDEKNDMYERKASAWYRVTYHPHWV 1140
Query: 502 KKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRRRRTENDISTKPIDSLGRYLADKI 329
+S ELQ+ D VMLSFAWIAADY+ARIKIR+R +N STKPI+ LGRYL +KI
Sbjct: 1141 TRSLELQLPDAVSNGVMLSFAWIAADYIARIKIRQRGMQNSDSTKPINFLGRYLVNKI 1198
>ref|XP_015885879.1| PREDICTED: RNA-dependent RNA polymerase 6 [Ziziphus jujuba]
gi|1009137116|ref|XP_015885880.1| PREDICTED:
RNA-dependent RNA polymerase 6 [Ziziphus jujuba]
gi|1009137118|ref|XP_015885881.1| PREDICTED:
RNA-dependent RNA polymerase 6 [Ziziphus jujuba]
gi|1009137120|ref|XP_015885882.1| PREDICTED:
RNA-dependent RNA polymerase 6 [Ziziphus jujuba]
gi|1009137122|ref|XP_015885883.1| PREDICTED:
RNA-dependent RNA polymerase 6 [Ziziphus jujuba]
Length = 1197
Score = 1763 bits (4566), Expect = 0.0
Identities = 853/1199 (71%), Positives = 1002/1199 (83%), Gaps = 1/1199 (0%)
Frame = -2
Query: 3922 MGSEIDGKNMVVTQISVGGLEKNVTAEMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI 3743
MGS+ + K MVVTQ+S+GG +++V A+ L D+ E+ IG+V+RCRLKTSSTPP+SYP+Y I
Sbjct: 1 MGSKENEKQMVVTQVSLGGFDRHVRAKDLSDFLEDEIGLVYRCRLKTSSTPPESYPDYTI 60
Query: 3742 DTEGIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILRGKPLKVSLGPENPHHLN 3563
DT I+RKDDY+KVEPHAFVHFA+ SA LDAAGR ELIL +PLKVSLGPENP+ LN
Sbjct: 61 DTAAIERKDDYKKVEPHAFVHFALAESAKWILDAAGRCELILNDRPLKVSLGPENPYRLN 120
Query: 3562 EKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFS 3383
++RRTT P KLSDV V++G + +R++F + WRGP GVDFLVDPF+G CK FT+DTAFS
Sbjct: 121 QRRRTTTPIKLSDVVVDIGTLVTRDQFFIAWRGPPYGVDFLVDPFDGTCKFCFTRDTAFS 180
Query: 3382 FKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLASSPLIYYRTADDDIKESV 3203
FKG + AVIKC+F++EFL R+I E K Y D L++LLQL S+P I+YRTADDDI +SV
Sbjct: 181 FKGSLNHAVIKCDFKMEFLVRDINEFKQYTDTSYLVLLLQLNSAPRIWYRTADDDIDDSV 240
Query: 3202 PFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTKALEYLRKRRVPVIYESP 3023
P+D+LDDDDPWIRTTDFTPSGAIGR N+YRISV PR+G L KA+ YLR+RRV ++S
Sbjct: 241 PYDMLDDDDPWIRTTDFTPSGAIGRSNSYRISVPPRHGAKLKKAISYLRERRVH--HDSL 298
Query: 3022 RHRLLVQDEPDFGVPMLDPFFCIQYKEGISFKVLFLVNAVMHKGIINQHQMSEKFFDLLR 2843
R L +Q EPDF +PM DPFFCI YKE I F+ +FLVNAV+HKGI NQHQ+S+ FF+LLR
Sbjct: 299 RWPLRIQKEPDFDMPMSDPFFCIHYKEDIDFETMFLVNAVIHKGIFNQHQISDGFFNLLR 358
Query: 2842 SRPEEVNTVALKHMCSYKHPMYDAFKALELVQKWLLNNPKLLERPREMNDIVEVRRLIIT 2663
++ +EVN ALKH+ SYK P++DA + L++VQ+WLL +PKL ++P+ ++DI EVRRL+IT
Sbjct: 359 NQMKEVNVAALKHISSYKRPVFDACRRLKVVQEWLLRDPKLFKKPKRLDDIAEVRRLVIT 418
Query: 2662 PAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNKNVLTYYVGPMARGITSN 2483
P +AYCLPPEVELSNRVLRNY+ +ADRFLRVTFMDE M T+N NVLTY+V + R ITSN
Sbjct: 419 PTRAYCLPPEVELSNRVLRNYKEVADRFLRVTFMDEGMQTINSNVLTYHVASIVREITSN 478
Query: 2482 SNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWM 2303
S PQ+T +F+R+K IL NGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKN V +K+WM
Sbjct: 479 SFPQKTKVFQRIKSILTNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNINVFEVKSWM 538
Query: 2302 GKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAV 2123
G+FTNRN+AKCAARMG CFSSTYA+VEVPSTQVN PDI+RNGY FSDGIG ++ LA+
Sbjct: 539 GRFTNRNVAKCAARMGLCFSSTYASVEVPSTQVNRGFPDIKRNGYTFSDGIGKITPDLAL 598
Query: 2122 EVAEKLQISTDPPCAYQIRYAGYKGVIARW-PNIKDGTHLHLRTSMRKFESNHTILEICS 1946
EVA+KL++ +PPCAYQIRYAG+KGV+A W P DG L LR SM KF+SNHTILEICS
Sbjct: 599 EVAQKLKLERNPPCAYQIRYAGFKGVVACWKPTDDDGARLSLRPSMDKFQSNHTILEICS 658
Query: 1945 WTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQG 1766
WTRFQPGFLNRQIVTLLSAL V D IFW MQETM+ +L++ML DTD+AFDV+T SC +QG
Sbjct: 659 WTRFQPGFLNRQIVTLLSALNVSDEIFWNMQETMIFKLNQMLIDTDIAFDVLTASCAEQG 718
Query: 1765 STAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPSGRWLMGCLDELGVLEH 1586
+ AAIMLSAGF PQ EPHLRGMLT IRAAQL LREKARIFVPSGRWLMGCLDELGVLE
Sbjct: 719 NVAAIMLSAGFSPQKEPHLRGMLTCIRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQ 778
Query: 1585 GQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPE 1406
GQCFIQVS PSLE F KHGSRF+E L+V+KG V IAKNPCLHPGDVRILEAVD P+
Sbjct: 779 GQCFIQVSNPSLENCFSKHGSRFNERNDNLEVIKGFVVIAKNPCLHPGDVRILEAVDVPD 838
Query: 1405 LHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYAAGEARE 1226
LHHL+DCLVFPQKG+RPHTNEASGSDLDGDLYFVTWDENLIPPSK+SWIPM Y A E ++
Sbjct: 839 LHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMQYDAAETKQ 898
Query: 1225 LPRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLSDYGALDEKCIKLAELAAIAVDFP 1046
L R V DIIEFF+KNMVNE+LGTICNAHVVHADLS++GALDEKC+KLA+LAA AVDFP
Sbjct: 899 LTRPVTQEDIIEFFSKNMVNENLGTICNAHVVHADLSEHGALDEKCLKLADLAATAVDFP 958
Query: 1045 KTGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGKLYRKIKDANDRGYEESSEQTFAL 866
KTGKIVTMP LKPKLYPDFMGK+E Q+Y SNKILGKLYRKIKDA D SSE F
Sbjct: 959 KTGKIVTMPFNLKPKLYPDFMGKDEYQSYKSNKILGKLYRKIKDAYDEDVTASSEINFLP 1018
Query: 865 ENITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLGQYKVNREEELVTGHIWSMPKYSS 686
+I YD DLE++G+ FI DAW KCSYDGQL GLLGQYKVNREEE+VTGHIWSMPKYSS
Sbjct: 1019 SDIPYDIDLEVSGASDFIVDAWEQKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSS 1078
Query: 685 KKQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSDDEKNIMYEKKASAWYQVTYHESW 506
+KQGELKERLKH+YS L+KEFR++FE M+ +F++LSDDEKNI+YE+KASAWYQVTYH W
Sbjct: 1079 RKQGELKERLKHSYSALKKEFRQIFEKMEEKFEELSDDEKNIIYEQKASAWYQVTYHPEW 1138
Query: 505 LKKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRRRRTENDISTKPIDSLGRYLADKI 329
+KKS +LQ D + VMLSFAWIAADYL RIKIR R N KPI++LG+YL+D++
Sbjct: 1139 VKKSLDLQEPDGSRYAVMLSFAWIAADYLTRIKIRCRGVGNVDCDKPINALGKYLSDRM 1197
>ref|XP_015073465.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Solanum pennellii]
gi|970024312|ref|XP_015073466.1| PREDICTED: RNA-dependent
RNA polymerase 6-like [Solanum pennellii]
Length = 1197
Score = 1758 bits (4552), Expect = 0.0
Identities = 859/1198 (71%), Positives = 995/1198 (83%)
Frame = -2
Query: 3922 MGSEIDGKNMVVTQISVGGLEKNVTAEMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI 3743
MGSE KN+VVTQISVGG +V A+ML +Y E +G VWRCRLKTSSTPPDSYP Y+I
Sbjct: 1 MGSEGSEKNLVVTQISVGGFSNDVNAKMLSEYLEEQVGQVWRCRLKTSSTPPDSYPTYDI 60
Query: 3742 DTEGIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILRGKPLKVSLGPENPHHLN 3563
D E ++R ++Y KVEPHAFVHFA SA +AL AA R EL L KPLKVSLGPEN ++N
Sbjct: 61 DLEKVRRMNNYIKVEPHAFVHFASSESAQNALAAARRDELFLEEKPLKVSLGPENTFNMN 120
Query: 3562 EKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFS 3383
++RRT +P+K SDV VE+GV+ S ++FVVGWRGP +GV+FLVDPFN CK+ FT+DTAF
Sbjct: 121 KRRRTFMPFKFSDVGVEIGVLVSNDDFVVGWRGPHSGVNFLVDPFNETCKILFTRDTAFC 180
Query: 3382 FKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLASSPLIYYRTADDDIKESV 3203
FKGE K AVIKCNF+IEFL REI EI +DF SL++LLQLASSPL++YRTADDDI+ESV
Sbjct: 181 FKGEGKHAVIKCNFKIEFLLREINEINECKDFSSLVLLLQLASSPLVFYRTADDDIEESV 240
Query: 3202 PFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTKALEYLRKRRVPVIYESP 3023
FDLLDDDD WIRTTD T SGAIGR NTYR+S+RPR GP L KA+ + R+ RVPV+ E
Sbjct: 241 AFDLLDDDDQWIRTTDITCSGAIGRFNTYRVSIRPRNGPSLKKAMNHFRESRVPVV-EQG 299
Query: 3022 RHRLLVQDEPDFGVPMLDPFFCIQYKEGISFKVLFLVNAVMHKGIINQHQMSEKFFDLLR 2843
+ L V++EPDFG + +PFFC Q EGISFKVLFLVNAV+HKGI+NQHQM+ +FF LLR
Sbjct: 300 KQMLRVRNEPDFGESVSEPFFCFQNHEGISFKVLFLVNAVLHKGIVNQHQMTAEFFSLLR 359
Query: 2842 SRPEEVNTVALKHMCSYKHPMYDAFKALELVQKWLLNNPKLLERPREMNDIVEVRRLIIT 2663
E VN ALKH+ SYK P+ DA + L VQKWL NNP LLER +++D+VEVRRL+IT
Sbjct: 360 KHQEGVNLAALKHIFSYKRPVNDAIRKLASVQKWLFNNPNLLERTGQLDDVVEVRRLVIT 419
Query: 2662 PAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNKNVLTYYVGPMARGITSN 2483
P KAYCLPP VELSNRVLR Y++I+DRFLRVTFMDE M LN+N LTYY + R ITS+
Sbjct: 420 PTKAYCLPPTVELSNRVLRKYKHISDRFLRVTFMDEGMRNLNRNALTYYAANIVREITSS 479
Query: 2482 SNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWM 2303
SNPQRT +F+RVK I+N GFYLCGR+YSFLAFS+NQLRDRSAWFFAE V +I NWM
Sbjct: 480 SNPQRTGIFQRVKIIVNKGFYLCGRRYSFLAFSANQLRDRSAWFFAETPEIRVTSIINWM 539
Query: 2302 GKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAV 2123
GKF NRN+AKCAARMGQCFSSTYATVEV ++VNS+LPDIERNGYVFSDGIGMMSV L++
Sbjct: 540 GKFGNRNVAKCAARMGQCFSSTYATVEVLPSEVNSELPDIERNGYVFSDGIGMMSVDLSI 599
Query: 2122 EVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRTSMRKFESNHTILEICSW 1943
EVAEKLQ+S +PPCAYQIRYAG KGV+A WP KDG L LR SM+KF+SNHTILEICSW
Sbjct: 600 EVAEKLQLSVNPPCAYQIRYAGCKGVVACWPAEKDGIRLSLRPSMKKFDSNHTILEICSW 659
Query: 1942 TRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGS 1763
TR QPGFLNRQI+TLLS+LEV+D +FW MQ+ M+S+LD++L D+D+AFDV+T SC + G+
Sbjct: 660 TRLQPGFLNRQIITLLSSLEVKDEMFWEMQKEMLSKLDKILVDSDVAFDVITASCAEAGN 719
Query: 1762 TAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPSGRWLMGCLDELGVLEHG 1583
TAAIMLSAGFKPQ+EPHLRGML SIRAAQLGDLR KAR+FV SGRWLMGCLDELG LE G
Sbjct: 720 TAAIMLSAGFKPQSEPHLRGMLASIRAAQLGDLRNKARMFVTSGRWLMGCLDELGELEQG 779
Query: 1582 QCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPEL 1403
QCFIQVS PSLE FVKHG FSE +K LQV+KGLV IAKNPCLHPGDVRILEAVD P L
Sbjct: 780 QCFIQVSSPSLETCFVKHGPEFSEIKKNLQVIKGLVVIAKNPCLHPGDVRILEAVDVPGL 839
Query: 1402 HHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYAAGEAREL 1223
HHL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPSK+SW+PM YA EA++L
Sbjct: 840 HHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWMPMAYAPAEAKQL 899
Query: 1222 PRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLSDYGALDEKCIKLAELAAIAVDFPK 1043
R V+H+DII+FF KNMV ESLG ICNAHVVHADLS++GA+DEKC+KLAELAA+AVDFPK
Sbjct: 900 GRQVQHTDIIDFFLKNMVQESLGEICNAHVVHADLSEFGAMDEKCLKLAELAALAVDFPK 959
Query: 1042 TGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGKLYRKIKDANDRGYEESSEQTFALE 863
TGK+VTMP +LKPK+YPDFMGKE Q+Y S K+LGKLYR++ D D ESS + +
Sbjct: 960 TGKLVTMPYDLKPKMYPDFMGKEPFQSYESKKVLGKLYRQVIDVYDAEGGESSGLEYVPK 1019
Query: 862 NITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLGQYKVNREEELVTGHIWSMPKYSSK 683
+I YD +LEI G + FI DAWN KCSYDGQL GLLGQYKVN EEE+VTGHIWSMPKYS+K
Sbjct: 1020 DIPYDTNLEIPGYEDFIDDAWNHKCSYDGQLNGLLGQYKVNGEEEVVTGHIWSMPKYSAK 1079
Query: 682 KQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSDDEKNIMYEKKASAWYQVTYHESWL 503
KQGELKERLKHAY+ LRKEFR VFE M+P+FD L DEKN MYE+KASAWY+VTYH W+
Sbjct: 1080 KQGELKERLKHAYNMLRKEFRNVFEQMEPDFDLLPIDEKNDMYERKASAWYRVTYHPHWV 1139
Query: 502 KKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRRRRTENDISTKPIDSLGRYLADKI 329
+S ELQ+ D VMLSFAWIAADY+ARIKIR+R +N STKPIDSLGRYL +KI
Sbjct: 1140 TRSLELQLPDAVSNGVMLSFAWIAADYIARIKIRQRGMQNYDSTKPIDSLGRYLVNKI 1197
>ref|XP_010319120.1| PREDICTED: RNA-dependent RNA polymerase 6 isoform X1 [Solanum
lycopersicum] gi|723688503|ref|XP_010319121.1| PREDICTED:
RNA-dependent RNA polymerase 6 isoform X1 [Solanum
lycopersicum]
Length = 1197
Score = 1756 bits (4548), Expect = 0.0
Identities = 859/1198 (71%), Positives = 991/1198 (82%)
Frame = -2
Query: 3922 MGSEIDGKNMVVTQISVGGLEKNVTAEMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI 3743
MGSE KN+VVTQISVGG +V A+ML +Y E +G VWRCRLKTSSTPPDSYP Y+I
Sbjct: 1 MGSEGSEKNLVVTQISVGGFSNDVNAKMLSEYLEEQVGQVWRCRLKTSSTPPDSYPTYDI 60
Query: 3742 DTEGIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILRGKPLKVSLGPENPHHLN 3563
D E ++R ++Y KVEPHAFVHFA SA +AL AA R EL L KPLKVSLGPEN ++N
Sbjct: 61 DVEKVRRMNNYIKVEPHAFVHFASSESAQNALAAARRDELFLEEKPLKVSLGPENTFNMN 120
Query: 3562 EKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFS 3383
E+RRT +PYK SDV VE+GV+ S ++FVVGWRGP +GV+FLVDPFNG+CK+ FT+DTAF
Sbjct: 121 ERRRTFMPYKFSDVGVEIGVLVSNDDFVVGWRGPHSGVNFLVDPFNGKCKILFTRDTAFC 180
Query: 3382 FKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLASSPLIYYRTADDDIKESV 3203
FKGE K AVIKCNF+IEFL REI EI +DF SL++LLQLASSPL++YRTADDDI+ESV
Sbjct: 181 FKGEGKHAVIKCNFKIEFLLREINEINECKDFSSLVLLLQLASSPLVFYRTADDDIEESV 240
Query: 3202 PFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTKALEYLRKRRVPVIYESP 3023
FDLLDDDD WIRTTD T SGAIGR NTYR+S+RPR GP KA+ Y R+ RVPV+ E
Sbjct: 241 AFDLLDDDDQWIRTTDITFSGAIGRFNTYRVSIRPRNGPSFKKAMNYFRESRVPVV-EQG 299
Query: 3022 RHRLLVQDEPDFGVPMLDPFFCIQYKEGISFKVLFLVNAVMHKGIINQHQMSEKFFDLLR 2843
L V++EPDFG + +PFFC Q EGISFKVLFLVNAV+HKGI+NQHQM+ +FF LLR
Sbjct: 300 EQMLRVRNEPDFGESVSEPFFCFQNHEGISFKVLFLVNAVLHKGIVNQHQMTAEFFSLLR 359
Query: 2842 SRPEEVNTVALKHMCSYKHPMYDAFKALELVQKWLLNNPKLLERPREMNDIVEVRRLIIT 2663
E VN ALKH+ SYK P+ DA + L VQKWL NNP LLER +++D+VEVRRL+IT
Sbjct: 360 KHQEGVNLAALKHIFSYKRPVNDAIRKLASVQKWLFNNPNLLERTGQLDDVVEVRRLVIT 419
Query: 2662 PAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNKNVLTYYVGPMARGITSN 2483
P KAYCLPP VELSNRVLR Y++I+DRFLRVTFMDE M LN+N LTYY + R ITS+
Sbjct: 420 PTKAYCLPPTVELSNRVLRKYKHISDRFLRVTFMDEGMRNLNRNALTYYAANIVREITSS 479
Query: 2482 SNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWM 2303
SNPQRT +F+RVK I+N GFYLCGR+YSFLAFS+NQLRDRSAWFFAE V +I NWM
Sbjct: 480 SNPQRTGIFQRVKIIVNKGFYLCGRRYSFLAFSANQLRDRSAWFFAETPEIRVTSIINWM 539
Query: 2302 GKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAV 2123
GKF NRN+AKCAARMGQCFSSTYATVEV ++VNS+LPDIERNGYVFSDGIGMM+ L++
Sbjct: 540 GKFGNRNVAKCAARMGQCFSSTYATVEVLPSEVNSELPDIERNGYVFSDGIGMMTADLSI 599
Query: 2122 EVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRTSMRKFESNHTILEICSW 1943
EVA KLQ+S +PPCAYQIRYAG KGV+A WP KDG L LR SM+KF+SNHTILEICSW
Sbjct: 600 EVAAKLQLSVNPPCAYQIRYAGCKGVVACWPAEKDGIRLSLRPSMKKFDSNHTILEICSW 659
Query: 1942 TRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGS 1763
TR QPGFLNRQI+TLLS+LEV+D +FW MQ+ M+S+LD++L D+D+AFDV+T SC + G+
Sbjct: 660 TRLQPGFLNRQIITLLSSLEVKDEMFWEMQKEMLSKLDKILVDSDVAFDVITASCAEAGN 719
Query: 1762 TAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPSGRWLMGCLDELGVLEHG 1583
TAAIMLSAGFKPQ+EPHLRGML SIRAAQLGDLR K R+FV SGRWLMGCLDELG LE G
Sbjct: 720 TAAIMLSAGFKPQSEPHLRGMLASIRAAQLGDLRNKTRMFVTSGRWLMGCLDELGELEQG 779
Query: 1582 QCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPEL 1403
QCFIQVS PSLE FVKHG FSE +K LQVVKGLV IAKNPCLHPGDVRILEAVD P L
Sbjct: 780 QCFIQVSSPSLETCFVKHGPEFSEIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGL 839
Query: 1402 HHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYAAGEAREL 1223
HHL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPSK+SW+PM YA EA++L
Sbjct: 840 HHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWMPMAYAPAEAKQL 899
Query: 1222 PRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLSDYGALDEKCIKLAELAAIAVDFPK 1043
R V+H+DII+FF KNMV ESLG ICNAHVVHADLS++GA+DEKC+KLAELAA+AVDFPK
Sbjct: 900 GRQVQHTDIIDFFLKNMVQESLGEICNAHVVHADLSEFGAMDEKCLKLAELAALAVDFPK 959
Query: 1042 TGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGKLYRKIKDANDRGYEESSEQTFALE 863
TGK+VTMP +LKPK+YPDFMGKE Q+Y S KILGKLYR++ D D ESS + +
Sbjct: 960 TGKLVTMPFDLKPKMYPDFMGKEPFQSYESKKILGKLYRQVIDVYDAEGGESSGLEYVPK 1019
Query: 862 NITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLGQYKVNREEELVTGHIWSMPKYSSK 683
+I YD +LEI G + FI DAWN KCSYDGQL GLLGQYKVN EEE+VTGHIWSMPKYS+K
Sbjct: 1020 DIPYDTNLEIPGYEDFIDDAWNHKCSYDGQLNGLLGQYKVNGEEEVVTGHIWSMPKYSAK 1079
Query: 682 KQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSDDEKNIMYEKKASAWYQVTYHESWL 503
KQGELKERLKHAY+ LRKEFR VFE M+P+FD L DEKN MYE+KA AWY+VTYH W+
Sbjct: 1080 KQGELKERLKHAYNMLRKEFRNVFEQMEPDFDLLPIDEKNDMYERKAFAWYRVTYHPHWV 1139
Query: 502 KKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRRRRTENDISTKPIDSLGRYLADKI 329
+S ELQ+ D VMLSFAWIAADY+ARIKIR+R +N STKPIDSLGRYL +KI
Sbjct: 1140 TRSLELQLPDAVSNGVMLSFAWIAADYIARIKIRQRGMQNFDSTKPIDSLGRYLVNKI 1197
>ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lycopersicum]
gi|397529811|gb|AFO53516.1| RNA-dependent RNA polymerase
6 [Solanum lycopersicum]
Length = 1197
Score = 1754 bits (4543), Expect = 0.0
Identities = 858/1198 (71%), Positives = 990/1198 (82%)
Frame = -2
Query: 3922 MGSEIDGKNMVVTQISVGGLEKNVTAEMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI 3743
MGSE N+VVTQISVGG +V A+ML +Y E +G VWRCRLKTSSTPPDSYP Y+I
Sbjct: 1 MGSEDSDMNIVVTQISVGGFSNDVNAKMLSEYLEEQVGQVWRCRLKTSSTPPDSYPTYDI 60
Query: 3742 DTEGIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILRGKPLKVSLGPENPHHLN 3563
D E ++R ++Y KVEPHAFVHFA SA +AL AA R EL L KPLKVSLGPEN ++N
Sbjct: 61 DVEKVRRMNNYIKVEPHAFVHFASSESAQNALAAARRDELFLEEKPLKVSLGPENTFNMN 120
Query: 3562 EKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFS 3383
E+RRT +PYK SDV VE+GV+ S ++FVVGWRGP +GV+FLVDPFNG+CK+ FT+DTAF
Sbjct: 121 ERRRTFMPYKFSDVGVEIGVLVSNDDFVVGWRGPHSGVNFLVDPFNGKCKILFTRDTAFC 180
Query: 3382 FKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLASSPLIYYRTADDDIKESV 3203
FKGE K AVIKCNF+IEFL REI EI +DF SL++LLQLASSPL++YRTADDDI+ESV
Sbjct: 181 FKGEGKHAVIKCNFKIEFLLREINEINECKDFSSLVLLLQLASSPLVFYRTADDDIEESV 240
Query: 3202 PFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTKALEYLRKRRVPVIYESP 3023
FDLLDDDD WIRTTD T SGAIGR NTYR+S+RPR GP KA+ Y R+ RVPV+ E
Sbjct: 241 AFDLLDDDDQWIRTTDITFSGAIGRFNTYRVSIRPRNGPSFKKAMNYFRESRVPVV-EQG 299
Query: 3022 RHRLLVQDEPDFGVPMLDPFFCIQYKEGISFKVLFLVNAVMHKGIINQHQMSEKFFDLLR 2843
L V++EPDFG + +PFFC Q EGISFKVLFLVNAV+HKGI+NQHQM+ +FF LLR
Sbjct: 300 EQMLRVRNEPDFGESVSEPFFCFQNHEGISFKVLFLVNAVLHKGIVNQHQMTAEFFSLLR 359
Query: 2842 SRPEEVNTVALKHMCSYKHPMYDAFKALELVQKWLLNNPKLLERPREMNDIVEVRRLIIT 2663
E VN ALKH+ SYK P+ DA + L VQKWL NNP LLER +++D+VEVRRL+IT
Sbjct: 360 KHQEGVNLAALKHIFSYKRPVNDAIRKLASVQKWLFNNPNLLERTGQLDDVVEVRRLVIT 419
Query: 2662 PAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNKNVLTYYVGPMARGITSN 2483
P KAYCLPP VELSNRVLR Y++I+DRFLRVTFMDE M LN+N LTYY + R ITS+
Sbjct: 420 PTKAYCLPPTVELSNRVLRKYKHISDRFLRVTFMDEGMRNLNRNALTYYAANIVREITSS 479
Query: 2482 SNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWM 2303
SNPQRT +F+RVK I+N GFYLCGR+YSFLAFS+NQLRDRSAWFFAE V +I NWM
Sbjct: 480 SNPQRTGIFQRVKIIVNKGFYLCGRRYSFLAFSANQLRDRSAWFFAETPEIRVTSIINWM 539
Query: 2302 GKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAV 2123
GKF NRN+AKCAARMGQCFSSTYATVEV ++VNS+LPDIERNGYVFSDGIGMM+ L++
Sbjct: 540 GKFGNRNVAKCAARMGQCFSSTYATVEVLPSEVNSELPDIERNGYVFSDGIGMMTADLSI 599
Query: 2122 EVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRTSMRKFESNHTILEICSW 1943
EVA KLQ+S +PPCAYQIRYAG KGV+A WP KDG L LR SM+KF+SNHTILEICSW
Sbjct: 600 EVAAKLQLSVNPPCAYQIRYAGCKGVVACWPAEKDGIRLSLRPSMKKFDSNHTILEICSW 659
Query: 1942 TRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGS 1763
TR QPGFLNRQI+TLLS+LEV+D +FW MQ+ M+S+LD++L D+D+AFDV+T SC + G+
Sbjct: 660 TRLQPGFLNRQIITLLSSLEVKDEMFWEMQKEMLSKLDKILVDSDVAFDVITASCAEAGN 719
Query: 1762 TAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPSGRWLMGCLDELGVLEHG 1583
TAAIMLSAGFKPQ+EPHLRGML SIRAAQLGDLR K R+FV SGRWLMGCLDELG LE G
Sbjct: 720 TAAIMLSAGFKPQSEPHLRGMLASIRAAQLGDLRNKTRMFVTSGRWLMGCLDELGELEQG 779
Query: 1582 QCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPEL 1403
QCFIQVS PSLE FVKHG FSE +K LQVVKGLV IAKNPCLHPGDVRILEAVD P L
Sbjct: 780 QCFIQVSSPSLETCFVKHGPEFSEIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGL 839
Query: 1402 HHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYAAGEAREL 1223
HHL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPSK+SW+PM YA EA++L
Sbjct: 840 HHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWMPMAYAPAEAKQL 899
Query: 1222 PRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLSDYGALDEKCIKLAELAAIAVDFPK 1043
R V+H+DII+FF KNMV ESLG ICNAHVVHADLS++GA+DEKC+KLAELAA+AVDFPK
Sbjct: 900 GRQVQHTDIIDFFLKNMVQESLGEICNAHVVHADLSEFGAMDEKCLKLAELAALAVDFPK 959
Query: 1042 TGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGKLYRKIKDANDRGYEESSEQTFALE 863
TGK+VTMP +LKPK+YPDFMGKE Q+Y S KILGKLYR++ D D ESS + +
Sbjct: 960 TGKLVTMPFDLKPKMYPDFMGKEPFQSYESKKILGKLYRQVIDVYDAEGGESSGLEYVPK 1019
Query: 862 NITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLGQYKVNREEELVTGHIWSMPKYSSK 683
+I YD +LEI G + FI DAWN KCSYDGQL GLLGQYKVN EEE+VTGHIWSMPKYS+K
Sbjct: 1020 DIPYDTNLEIPGYEDFIDDAWNHKCSYDGQLNGLLGQYKVNGEEEVVTGHIWSMPKYSAK 1079
Query: 682 KQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSDDEKNIMYEKKASAWYQVTYHESWL 503
KQGELKERLKHAY+ LRKEFR VFE M+P+FD L DEKN MYE+KA AWY+VTYH W+
Sbjct: 1080 KQGELKERLKHAYNMLRKEFRNVFEQMEPDFDLLPIDEKNDMYERKAFAWYRVTYHPHWV 1139
Query: 502 KKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRRRRTENDISTKPIDSLGRYLADKI 329
+S ELQ+ D VMLSFAWIAADY+ARIKIR+R +N STKPIDSLGRYL +KI
Sbjct: 1140 TRSLELQLPDAVSNGVMLSFAWIAADYIARIKIRQRGMQNFDSTKPIDSLGRYLVNKI 1197
>ref|XP_002515520.1| PREDICTED: RNA-dependent RNA polymerase 6 [Ricinus communis]
gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
putative [Ricinus communis]
Length = 1203
Score = 1748 bits (4528), Expect = 0.0
Identities = 848/1198 (70%), Positives = 990/1198 (82%), Gaps = 7/1198 (0%)
Frame = -2
Query: 3901 KNMVVTQISVGGLEKNVTAEMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI-DTEGIQ 3725
K VVTQ+S GG +K+VTA L+ Y +N IG VWRCRLKTS TPP+SYPN+EI DT IQ
Sbjct: 8 KETVVTQVSFGGFDKDVTARDLVAYLDNEIGQVWRCRLKTSWTPPESYPNFEITDTAVIQ 67
Query: 3724 RKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILRGKPLKVSLGPENPHHLNEKRRTT 3545
R D Y +VEPHAFVHFA SAT A +AAG EL G+P+KVSLGPENP HLN++RRTT
Sbjct: 68 RVDAYRRVEPHAFVHFASPDSATWAKNAAGHCELFFNGRPVKVSLGPENPFHLNQRRRTT 127
Query: 3544 IPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAFSFKGEVK 3365
IP+KLSDV VE+G + SR+EF+VGWRGP +GVDFLVDPF+G+CK FT+DTAFSFKG +
Sbjct: 128 IPFKLSDVHVEIGTLVSRDEFLVGWRGPPSGVDFLVDPFDGKCKFCFTRDTAFSFKGTTE 187
Query: 3364 SAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLASSPLIYYRTADDDIKESVPFDLLD 3185
AVI+C+F++EFL R+I EIK Y D L++LLQLAS+P ++YRTADDDI+ VPFDLLD
Sbjct: 188 HAVIRCDFKLEFLVRDINEIKQYTDTSCLVILLQLASAPSVWYRTADDDIEVLVPFDLLD 247
Query: 3184 DDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTKALEYLRKRRVPVIYESPRHRLLV 3005
DDDPWIRTTDFTPSGAIGRCN+YR+S+ PR+G L +AL +LR+RRV + R L V
Sbjct: 248 DDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLKRALNFLRERRVQE--DCLRRPLHV 305
Query: 3004 QDEPDFGVPMLDPFFCIQYKEGISFKVLFLVNAVMHKGIINQHQMSEKFFDLLRSRPEEV 2825
EP++ +PM DPFFCI ++EG+ F ++FLVNAVMHKGI NQHQ+S+ FFDLLR++P +V
Sbjct: 306 TAEPEYEMPMSDPFFCIHHEEGVDFNLMFLVNAVMHKGIFNQHQLSDSFFDLLRNQPLDV 365
Query: 2824 NTVALKHMCSYKHPMYDAFKALELVQKWLLNNPKLLERPREMNDIVEVRRLIITPAKAYC 2645
N AL+H+CSYKHP++DA K L+ VQ+WLL NPKL ++++DIVE+RRL ITP +AYC
Sbjct: 366 NIAALRHICSYKHPVFDAHKRLKAVQQWLLKNPKLFRSSKQLDDIVEIRRLAITPTRAYC 425
Query: 2644 LPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNKNVLTYYVGPMARGITSNSNPQRT 2465
LPPEVELSNRVLR Y++IAD+FLRVTFMDE + T+N N LTYY P+ R ITSNS Q+T
Sbjct: 426 LPPEVELSNRVLRRYKDIADQFLRVTFMDEGLQTMNANTLTYYCAPIVRDITSNSFSQKT 485
Query: 2464 TMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNWMGKFTNR 2285
+FKRVK IL +GFYLCGRKYSFLAFSSNQLRDRSAWFFAED T V+ I+NWMGKFTNR
Sbjct: 486 RIFKRVKSILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDGKTSVSKIRNWMGKFTNR 545
Query: 2284 NIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLAVEVAEKL 2105
NIAKCAARMGQCFSSTYATVEVPS + LPDIERN Y+FSDGIGM++ LA EVAEKL
Sbjct: 546 NIAKCAARMGQCFSSTYATVEVPSAEAILDLPDIERNNYIFSDGIGMITPDLAKEVAEKL 605
Query: 2104 QISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRTSMRKFESNHTILEICSWTRFQPG 1925
++ +PPCAYQIRYAG KGV+A WP DG L LR SM KF SNHT LEICSWTRFQPG
Sbjct: 606 KLEVNPPCAYQIRYAGCKGVVACWPAHIDGIRLSLRVSMNKFHSNHTTLEICSWTRFQPG 665
Query: 1924 FLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQGSTAAIML 1745
FLNRQI+TLLS L+V D IFW+MQ MVS+L++M D D+AFDVVT SC +QG+TAAIML
Sbjct: 666 FLNRQIITLLSTLDVPDEIFWKMQIVMVSKLNQMFMDADVAFDVVTASCAEQGNTAAIML 725
Query: 1744 SAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPSGRWLMGCLDELGVLEHGQCFIQV 1565
SAGF P+TEPHL GMLT IRAAQL LREK RIFVPSGRWLMGCLDELGVLEHGQCFIQV
Sbjct: 726 SAGFNPKTEPHLCGMLTCIRAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEHGQCFIQV 785
Query: 1564 SIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPELHHLHDC 1385
S PSLE F KHGSRFSE++KKLQVVKG V +AKNPCLHPGD+RILEAVDAPELHHLHDC
Sbjct: 786 SNPSLESCFWKHGSRFSESKKKLQVVKGTVVVAKNPCLHPGDIRILEAVDAPELHHLHDC 845
Query: 1384 LVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYAAGEARELPRDVRH 1205
LVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSW+PM Y A EA++L R V H
Sbjct: 846 LVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWLPMQYDAAEAKQLNRPVNH 905
Query: 1204 SDIIEFFTKNMVNESLGTICNAHVVHADLSDYGALDEKCIKLAELAAIAVDFPKTGKIVT 1025
DII+FF KNMVNE+LG ICNAHVVHADLS+YGALDE CIKLAELAA AVDFPKTGK+VT
Sbjct: 906 QDIIDFFAKNMVNENLGAICNAHVVHADLSEYGALDENCIKLAELAATAVDFPKTGKLVT 965
Query: 1024 MPPELKPKLYPDFMGKEELQTYHSNKILGKLYRKIK------DANDRGYEESSEQTFALE 863
MPP LKPKLYPDFMGKE+ Q+Y+SNKILG+LYR++K D +D SSE
Sbjct: 966 MPPHLKPKLYPDFMGKEDYQSYNSNKILGRLYRQVKDDYNDDDDDDDDAATSSELNLVRG 1025
Query: 862 NITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLGQYKVNREEELVTGHIWSMPKYSSK 683
+I YD+DLE++GS +I DAW+ KCSYDGQL GLL QYKV REEE+VTGHIWSMPK +S+
Sbjct: 1026 DIPYDKDLEVSGSSDYILDAWDQKCSYDGQLKGLLAQYKVKREEEVVTGHIWSMPKCNSR 1085
Query: 682 KQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSDDEKNIMYEKKASAWYQVTYHESWL 503
KQGELKERLK +Y +L+KEFR+VFE MD +F+QL++DEKN++YE+KASAWYQV YH W+
Sbjct: 1086 KQGELKERLKQSYHSLKKEFRQVFEKMDSDFEQLTEDEKNLLYEQKASAWYQVAYHPKWV 1145
Query: 502 KKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRRRRTENDISTKPIDSLGRYLADKI 329
KS ELQ D AG MLSFAWIAADYLARIKIR R + ++KP++SL +YLAD+I
Sbjct: 1146 NKSMELQEPDAAGCASMLSFAWIAADYLARIKIRCRGFDGVDTSKPVNSLVKYLADRI 1203
>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
protein [Populus trichocarpa]
Length = 1200
Score = 1738 bits (4502), Expect = 0.0
Identities = 831/1200 (69%), Positives = 996/1200 (83%), Gaps = 2/1200 (0%)
Frame = -2
Query: 3922 MGSEIDGKNMVVTQISVGGLEKNVTAEMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI 3743
M +E K VVTQ+SVGG + +VTA+ L++Y + +IG+VWRCRLKTS TPP+SYPN+EI
Sbjct: 1 MEAEGSAKETVVTQVSVGGFDIHVTAKDLLEYLDRAIGLVWRCRLKTSWTPPESYPNFEI 60
Query: 3742 -DTEGIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILRGKPLKVSLGPENPHHL 3566
D I+R +DY +V PHAFVHFA+ SAT A++A+GR EL L K LKVSLGP+NP L
Sbjct: 61 TDITKIERTEDYRRVVPHAFVHFALPQSATLAMNASGRCELFLNNKALKVSLGPKNPFTL 120
Query: 3565 NEKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAF 3386
N++RRTT P+KLSDV E+G + SR+EF VGWRGP +GVDFLVDPF+G CK F+++TAF
Sbjct: 121 NQRRRTTTPFKLSDVGFEIGNLVSRDEFFVGWRGPPSGVDFLVDPFDGTCKFCFSRNTAF 180
Query: 3385 SFKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLASSPLIYYRTADDDIKES 3206
S K + AVIKC+F++EFL R+I EI Y + L++LLQLAS+P ++YRTADDDI+
Sbjct: 181 SLKSTSEHAVIKCDFKVEFLVRDINEIIQYTETSCLVLLLQLASAPWVWYRTADDDIEAW 240
Query: 3205 VPFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTKALEYLRKRRVPVIYE- 3029
VPFDLLDDDDPWIRTTDFT SGAIGRC++YR+S+ PR+G L KA++YL++RRV V+ E
Sbjct: 241 VPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGSKLRKAVKYLKERRVQVLQEE 300
Query: 3028 SPRHRLLVQDEPDFGVPMLDPFFCIQYKEGISFKVLFLVNAVMHKGIINQHQMSEKFFDL 2849
+ R R+ + DEPDFG+PM DPFFCI +KEGI+F+VLFLVNAVMHKGI NQHQ+S FFDL
Sbjct: 301 NHRRRIRILDEPDFGMPMSDPFFCIHHKEGIAFEVLFLVNAVMHKGIFNQHQLSNDFFDL 360
Query: 2848 LRSRPEEVNTVALKHMCSYKHPMYDAFKALELVQKWLLNNPKLLERPREMNDIVEVRRLI 2669
LR++ EVN ALKH+C+Y+ P+++A++ L+ VQ+WLL NP L + P+++ D+VE+RRL+
Sbjct: 361 LRNQHTEVNVSALKHICTYRRPVFNAYRRLKAVQEWLLKNPNLFKNPKQLGDVVEIRRLV 420
Query: 2668 ITPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNKNVLTYYVGPMARGIT 2489
ITP KAYCLPPEVELSNRVLR Y+++ADRFLRVTFMDE + +N NVL YYV P+ R IT
Sbjct: 421 ITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYVAPIVRDIT 480
Query: 2488 SNSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNTGVANIKN 2309
SNS PQ+T +FKRV+ IL GFYLCGR+YSFLAFS+NQLRD+SAWFF+E++N V ++K+
Sbjct: 481 SNSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFSEERNISVLDVKS 540
Query: 2308 WMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERNGYVFSDGIGMMSVSL 2129
WMGKFTNRNIAKCAARMGQCFSSTYAT+EVP +VNS LPDIERNGYVFSDGIG+++ L
Sbjct: 541 WMGKFTNRNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIERNGYVFSDGIGIITPDL 600
Query: 2128 AVEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRTSMRKFESNHTILEIC 1949
A EVAEKL++ DPPCAYQIRYAG KGV+A WP DG L LR SM KF+SNHT LEIC
Sbjct: 601 AREVAEKLKLDIDPPCAYQIRYAGCKGVVACWPGKGDGVRLSLRPSMNKFQSNHTTLEIC 660
Query: 1948 SWTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQ 1769
SWTRFQPGFLNRQI+TLLS L V D +FW+MQETMVS+L++M ++D+AFDV+T SC DQ
Sbjct: 661 SWTRFQPGFLNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDVLTASCADQ 720
Query: 1768 GSTAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPSGRWLMGCLDELGVLE 1589
G+ AAIMLSAGFKP EPHLRGMLT +RAAQL DLREK RIFVPSGRWLMGCLDELG+LE
Sbjct: 721 GNVAAIMLSAGFKPDREPHLRGMLTCVRAAQLWDLREKTRIFVPSGRWLMGCLDELGMLE 780
Query: 1588 HGQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPCLHPGDVRILEAVDAP 1409
GQCFIQVS SLE+ F+KHG++FSE EK LQV+KG V IAKNPCLHPGDVR+LEAVD P
Sbjct: 781 QGQCFIQVSNSSLEKCFMKHGAKFSEAEKNLQVIKGTVVIAKNPCLHPGDVRVLEAVDVP 840
Query: 1408 ELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYAAGEAR 1229
LHHL+DCLVFPQKG+RPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPM Y A EA+
Sbjct: 841 GLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAK 900
Query: 1228 ELPRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLSDYGALDEKCIKLAELAAIAVDF 1049
L R V H DIIEFF KNMVN++LG ICNAHVVHADLS+YGA D+ C+ LAELAA AVDF
Sbjct: 901 LLARPVNHQDIIEFFAKNMVNDNLGAICNAHVVHADLSEYGATDKNCLTLAELAATAVDF 960
Query: 1048 PKTGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGKLYRKIKDANDRGYEESSEQTFA 869
PKTGK+V+MPP LKPK+YPDFMGKEE Q+Y S KILG+LYR+IKDA D SSE
Sbjct: 961 PKTGKVVSMPPYLKPKMYPDFMGKEEYQSYKSEKILGRLYRQIKDAYDEDVAASSELNLV 1020
Query: 868 LENITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLGQYKVNREEELVTGHIWSMPKYS 689
+I YD DLE+ G+ +I+DAW+ KCSYDGQL GLL QYKV REEE+VTGHIWSMPKYS
Sbjct: 1021 PGDIPYDSDLEVVGASDYISDAWDQKCSYDGQLNGLLSQYKVKREEEVVTGHIWSMPKYS 1080
Query: 688 SKKQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSDDEKNIMYEKKASAWYQVTYHES 509
S+KQGELK+RLKH+Y++L+KEFR++FE MD EF+QL D EKN +YE+KASAWYQV YH
Sbjct: 1081 SRKQGELKDRLKHSYNSLKKEFRQIFEKMDLEFEQLEDGEKNKLYEQKASAWYQVVYHPH 1140
Query: 508 WLKKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRRRRTENDISTKPIDSLGRYLADKI 329
W+KKS ELQ D AG +VMLSFAWIAADYLARIKIR R T N S KP++SL +YLAD++
Sbjct: 1141 WVKKSLELQDPDGAGTSVMLSFAWIAADYLARIKIRHRETGNVDSAKPVNSLAKYLADRM 1200
>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
protein [Populus trichocarpa]
Length = 1198
Score = 1733 bits (4487), Expect = 0.0
Identities = 838/1200 (69%), Positives = 989/1200 (82%), Gaps = 2/1200 (0%)
Frame = -2
Query: 3922 MGSEIDGKNMVVTQISVGGLEKNVTAEMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI 3743
M +E K VVTQ+S+GG + +VTA+ L++Y E IG+VWRCRLKTS TPP+SYPN+EI
Sbjct: 1 METEGSAKETVVTQVSLGGFDIHVTAKDLLEYLEREIGLVWRCRLKTSWTPPESYPNFEI 60
Query: 3742 -DTEGIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILRGKPLKVSLGPENPHHL 3566
D I R +DY +VEPHAFVHFA+ SAT A+DAA R EL L K LK SLGPENP L
Sbjct: 61 TDITKITRTEDYRRVEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENPFTL 120
Query: 3565 NEKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAF 3386
N++RR T P+KLS V VE+G + SR+EF VGWRGP TGVDFLVDPF+G C+ F+++TAF
Sbjct: 121 NQRRRKTTPFKLSGVGVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAF 180
Query: 3385 SFKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLASSPLIYYRTADDDIKES 3206
SFK + AVIKC+F++EFL R+I EIK Y + L++LLQLAS+P ++YRTADDDI+ S
Sbjct: 181 SFKSTAEHAVIKCDFKVEFLVRDINEIKQYTETSCLVLLLQLASAPRVWYRTADDDIEVS 240
Query: 3205 VPFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTKALEYLRKRRVPVIYES 3026
VPFDLLDDDDPWIRTTDFT SGAIGRC++YR+S+ PR+GP L KA+++L++RRV Y
Sbjct: 241 VPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKERRVQEEYL- 299
Query: 3025 PRHRLLVQDEPDFGVPMLDPFFCIQYKEGISFKVLFLVNAVMHKGIINQHQMSEKFFDLL 2846
R + ++DEPDFG+PM DPFFCI +KEGI+F VLFLVNAVMHKGI NQHQ+S FFDLL
Sbjct: 300 -RRPIRIRDEPDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLL 358
Query: 2845 RSRPEEVNTVALKHMCSYKHPMYDAFKALELVQKWLLNNPKLLERPREMNDIVEVRRLII 2666
R++P EVN ALKH+ Y+ P++DA+K L++ Q+WLL NPK + ++++DI E+RRL+I
Sbjct: 359 RNQPTEVNVAALKHIYPYRRPVFDAYKKLKVAQEWLLKNPKFFKNQKKLDDIAEIRRLVI 418
Query: 2665 TPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNKNVLTYYVGPMARGITS 2486
TP KAYCLPPEVELSNRVLR Y+++ADRFLRVTFMDE + T+N N L Y+ P+ R ITS
Sbjct: 419 TPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQTMNSNALNYFAAPIVRAITS 478
Query: 2485 NSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNW 2306
S PQ+T +FKRV+ IL GFYLCGR+YSFLAFSSNQLRDRSAWFFAED+N V IK+W
Sbjct: 479 YSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNINVMAIKSW 538
Query: 2305 MGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLA 2126
MGKFTN+NIAKCAARMGQCFSSTYAT+EVP +VNS LPDI+RNGY FSDGIGM++ LA
Sbjct: 539 MGKFTNKNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGMITPDLA 598
Query: 2125 VEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRTSMRKFESNHTILEICS 1946
EVAEKL+ DPPCAYQIRYAG KGV+A WP DG L LR+SM KF+SNHTILEICS
Sbjct: 599 REVAEKLKFDFDPPCAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNHTILEICS 658
Query: 1945 WTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQG 1766
WTRFQPGFLNRQI+TLLSAL V D +FW+MQE MVS+L++ML D+D+AFDV+T SC +QG
Sbjct: 659 WTRFQPGFLNRQIITLLSALNVPDAVFWKMQELMVSKLNQMLVDSDVAFDVLTASCAEQG 718
Query: 1765 STAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPSGRWLMGCLDELGVLEH 1586
+ AAIMLSAGFKPQ EPHLRGMLT +RAAQL LREKARIFVPSGRWLMGCLDELGVLE
Sbjct: 719 NVAAIMLSAGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQ 778
Query: 1585 GQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPE 1406
GQCFIQVS LE FVKHGS+FSE +K LQVVKG V IAKNPCLHPGD+RILEAVDAP
Sbjct: 779 GQCFIQVSNSYLENCFVKHGSKFSETKKNLQVVKGTVVIAKNPCLHPGDIRILEAVDAPG 838
Query: 1405 LHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYAAGEARE 1226
LHHL+DCLVFPQKG+RPH NEASGSDLDGDLYFVTWDENLIPPSKRSWIPM Y A EA++
Sbjct: 839 LHHLYDCLVFPQKGERPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKQ 898
Query: 1225 LPRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLSDYGALDEKCIKLAELAAIAVDFP 1046
L R V H DI+EFF KNM NE+LG ICNAHVV ADLS+YGALDEKC+ LAELAA AVDFP
Sbjct: 899 LTRPVNHQDIVEFFAKNMANENLGAICNAHVVRADLSEYGALDEKCLTLAELAATAVDFP 958
Query: 1045 KTGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGKLYRKIKDA-NDRGYEESSEQTFA 869
KTGKIV+MP +LKPK+YPDFMGKEE Q+Y S KILG+LYR+IKDA +D SSE F
Sbjct: 959 KTGKIVSMPSDLKPKIYPDFMGKEEHQSYKSKKILGRLYRQIKDAYDDDDVAASSELNFV 1018
Query: 868 LENITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLGQYKVNREEELVTGHIWSMPKYS 689
+I YD DLE+ G+ FI+DAW+ KCSYDGQL GLL QYKV REEE+VTGH+WSMPK S
Sbjct: 1019 RGDIPYDLDLEVLGATDFISDAWDRKCSYDGQLNGLLAQYKVKREEEVVTGHVWSMPKGS 1078
Query: 688 SKKQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSDDEKNIMYEKKASAWYQVTYHES 509
S+KQG+LKERLKH+Y+ L++EFR+VFE MD +F QL DDEKN++YE+KASAWYQVTYH
Sbjct: 1079 SRKQGDLKERLKHSYNCLKREFRQVFEKMDLDFGQLDDDEKNMLYERKASAWYQVTYHPH 1138
Query: 508 WLKKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRRRRTENDISTKPIDSLGRYLADKI 329
W++KS ELQ D AG +VMLSFAWIAADYLARIKIR R N S KP++SL +YLAD++
Sbjct: 1139 WIQKSLELQDSDGAGISVMLSFAWIAADYLARIKIRHSRIGNVDSAKPVNSLAKYLADRM 1198
>ref|XP_012071453.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
gi|643731347|gb|KDP38635.1| hypothetical protein
JCGZ_03988 [Jatropha curcas]
Length = 1198
Score = 1730 bits (4481), Expect = 0.0
Identities = 843/1200 (70%), Positives = 986/1200 (82%), Gaps = 2/1200 (0%)
Frame = -2
Query: 3922 MGSEIDGKNMVVTQISVGGLEKNVTAEMLMDYFENSIGMVWRCRLKTSSTPPDSYPNYEI 3743
MG+E K+ VVTQ+S GG E +V A+ L+ Y E IG VWRCRLKTS TPP+SYPN++I
Sbjct: 1 MGTERSEKDTVVTQVSFGGFENHVNAKDLVAYLEEVIGQVWRCRLKTSWTPPESYPNFKI 60
Query: 3742 -DTEGIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILRGKPLKVSLGPENPHHL 3566
DT GI R ++Y++VEPHAFVHFA+ SAT A +AAGR EL L +PLKVSLGPENP L
Sbjct: 61 TDTAGIHRTNEYKRVEPHAFVHFALAESATWAKNAAGRCELFLNDRPLKVSLGPENPFTL 120
Query: 3565 NEKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVDPFNGRCKLQFTKDTAF 3386
N++RR TIP KLSDV +E+G+M SR+EF+VGWRGP +GVDFLVDPF+G CK FT+DTAF
Sbjct: 121 NQRRRKTIPSKLSDVCIEIGMMVSRDEFLVGWRGPPSGVDFLVDPFDGTCKFCFTRDTAF 180
Query: 3385 SFKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLASSPLIYYRTADDDIKES 3206
S K K AVI+C+F++EFL R+I EIK Y+D L++LLQLAS+P ++YRTADDDI+
Sbjct: 181 SIKDTNKHAVIRCDFKLEFLVRDINEIKQYKDTSYLVILLQLASAPWVWYRTADDDIEVL 240
Query: 3205 VPFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTKALEYLRKRRVPVIYES 3026
VPF+LLDDDDPWIRTTDFTPSGAIGRCN+YR+S+ PR+G L +A+ YL++RRV V +S
Sbjct: 241 VPFNLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLERAINYLKERRVQV--DS 298
Query: 3025 PRHRLLVQDEPDFGVPMLDPFFCIQYKEGISFKVLFLVNAVMHKGIINQHQMSEKFFDLL 2846
R L + +EPD+G+PM DPFFCI KEGI+F+++FLVNAVMHKGI NQHQ+S+ FFDLL
Sbjct: 299 LRRPLKILNEPDYGMPMSDPFFCIHRKEGIAFEIVFLVNAVMHKGIFNQHQLSDDFFDLL 358
Query: 2845 RSRPEEVNTVALKHMCSYKHPMYDAFKALELVQKWLLNNPKLLERPREMNDIVEVRRLII 2666
R++P ++N ALKH+CSYK P++DA + L+ VQ+WLL NPKL + P++++DIV++RRL I
Sbjct: 359 RNQPADINVAALKHICSYKRPVFDAHRRLKAVQEWLLKNPKLFKCPKQLDDIVQIRRLAI 418
Query: 2665 TPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNKNVLTYYVGPMARGITS 2486
TP +AYCLPPE+ELSNRVLR Y+N ADRFLRVTFMDE + T+N N LTYYV P+ R ITS
Sbjct: 419 TPTRAYCLPPEIELSNRVLRKYKNFADRFLRVTFMDEGLQTINANTLTYYVAPIVRDITS 478
Query: 2485 NSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNTGVANIKNW 2306
S Q+T +FKRVK IL +GFYLCGR+YSFLAFSSNQLRDRSAWFFAED V I+ W
Sbjct: 479 TSFSQKTRIFKRVKSILTDGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDGKIRVDQIRKW 538
Query: 2305 MGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERNGYVFSDGIGMMSVSLA 2126
MGKFTN+NIAKCAARMGQCFSSTYATVEVPS +VN PDIERNGY FSDGIGM++ LA
Sbjct: 539 MGKFTNKNIAKCAARMGQCFSSTYATVEVPSAEVNLAHPDIERNGYTFSDGIGMITPDLA 598
Query: 2125 VEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRTSMRKFESNHTILEICS 1946
VAEKL++ +PPCAYQIRYAG KGV+A WP DG L LR SM KF+SNHT LEICS
Sbjct: 599 KAVAEKLKLDINPPCAYQIRYAGCKGVVACWPAQGDGIRLSLRPSMNKFQSNHTTLEICS 658
Query: 1945 WTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLEDTDMAFDVVTGSCTDQG 1766
WTRFQPGFLNRQI+TLLS L V D IFW+MQ MVS+L++ML D D+AFDV+T SCT+QG
Sbjct: 659 WTRFQPGFLNRQIITLLSTLNVSDEIFWKMQIAMVSKLNKMLTDADVAFDVITASCTEQG 718
Query: 1765 STAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPSGRWLMGCLDELGVLEH 1586
+TAA+MLSAGFKPQ EPHLRGMLT IRAAQ DLREKARIFV SGRWLMGCLDELGVLE
Sbjct: 719 NTAALMLSAGFKPQNEPHLRGMLTCIRAAQFCDLREKARIFVSSGRWLMGCLDELGVLEQ 778
Query: 1585 GQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPCLHPGDVRILEAVDAPE 1406
GQCFIQVS PSLE F KHGSRFSE +K LQV+ G V IAKNPCLHPGDVRILEAVDAP
Sbjct: 779 GQCFIQVSNPSLETCFSKHGSRFSETKKNLQVITGTVVIAKNPCLHPGDVRILEAVDAPG 838
Query: 1405 LHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMDYAAGEARE 1226
L HLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSK+SW PM Y A E +
Sbjct: 839 LCHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKQSWTPMQYDAAEPKL 898
Query: 1225 LPRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLSDYGALDEKCIKLAELAAIAVDFP 1046
L R V H DII+FF KNMVNESLG ICNAHVV ADLS+YGALDE CIKLAELAA AVDFP
Sbjct: 899 LSRPVSHQDIIDFFAKNMVNESLGAICNAHVVRADLSEYGALDENCIKLAELAATAVDFP 958
Query: 1045 KTGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGKLYRKIKDA-NDRGYEESSEQTFA 869
KTGK+VT+P LKPK+YPDFMGKEE Q+Y S KILG+LYR IKDA D SSE +
Sbjct: 959 KTGKLVTLPQYLKPKMYPDFMGKEEYQSYKSTKILGRLYRDIKDAYGDDDAAASSELNCS 1018
Query: 868 LENITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLGQYKVNREEELVTGHIWSMPKYS 689
+I YD +LE+ GS +I +AW+ KCSYDGQL GLLGQYKV +EEELVTGHIWSMP Y+
Sbjct: 1019 SGDIPYDTNLEVLGSADYILEAWDQKCSYDGQLKGLLGQYKVKKEEELVTGHIWSMPMYN 1078
Query: 688 SKKQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSDDEKNIMYEKKASAWYQVTYHES 509
S+K GELKERLKH+YS L+KEFR+VFE MD +F+QL+DDEKN++YE+KASAWYQVTYH
Sbjct: 1079 SRKLGELKERLKHSYSALKKEFRQVFEKMDLDFEQLTDDEKNLLYERKASAWYQVTYHPK 1138
Query: 508 WLKKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRRRRTENDISTKPIDSLGRYLADKI 329
W+KKS ELQ D AG +LSFAWIAADYLARIKI+ R TE + KP++SL +YLAD+I
Sbjct: 1139 WIKKSLELQEPDAAGNATILSFAWIAADYLARIKIKHRGTEGVDTAKPVNSLVKYLADRI 1198