BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia27_contig00005966
         (2437 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP44457.1| Retrovirus-related Pol polyprotein from transposo...   490   0.0  
emb|CBI37296.3| unnamed protein product [Vitis vinifera]              435   0.0  
emb|CAN72600.1| hypothetical protein VITISV_036712 [Vitis vinifera]   381   0.0  
emb|CAN65188.1| hypothetical protein VITISV_004365 [Vitis vinifera]   405   0.0  
gb|KYP60819.1| Retrovirus-related Pol polyprotein from transposo...   403   e-180
emb|CAB75932.1| putative protein [Arabidopsis thaliana]               432   e-179
gb|KOM33859.1| hypothetical protein LR48_Vigan02g000900 [Vigna a...   425   e-177
gb|KYP63625.1| Retrovirus-related Pol polyprotein from transposo...   404   e-173
gb|KYP60712.1| Retrovirus-related Pol polyprotein from transposo...   403   e-171
gb|KYP57183.1| Retrovirus-related Pol polyprotein from transposo...   395   e-169
gb|AAG51247.1|AC055769_6 copia-type polyprotein, putative; 28768...   369   e-169
dbj|BAB11200.1| copia-type polyprotein [Arabidopsis thaliana] gi...   369   e-169
emb|CAN75114.1| hypothetical protein VITISV_001420 [Vitis vinifera]   391   e-169
gb|KYP38784.1| Retrovirus-related Pol polyprotein from transposo...   490   e-162
gb|KYP37051.1| Retrovirus-related Pol polyprotein from transposo...   401   e-161
gb|KYP40819.1| Retrovirus-related Pol polyprotein from transposo...   354   e-154
gb|KYP74877.1| Retrovirus-related Pol polyprotein from transposo...   419   e-151
emb|CAN74984.1| hypothetical protein VITISV_035210 [Vitis vinifera]   404   e-147
gb|KYP50277.1| Retrovirus-related Pol polyprotein from transposo...   294   e-146
gb|KYP43087.1| Retrovirus-related Pol polyprotein from transposo...   434   e-140

>gb|KYP44457.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 690

 Score =  490 bits (1262), Expect(2) = 0.0
 Identities = 229/337 (67%), Positives = 279/337 (82%), Gaps = 3/337 (0%)
 Frame = -3

Query: 1004 QYECPSWDKEANYAEFNETEELLLMSYLEINNAKTEEAWFLDSGCSNHMCGNKSIFSEFD 825
            +YECP WD  A Y  FNE EELLLM+Y ++++ +T  AWFLDSGCSNHMCGN++ F E D
Sbjct: 263  KYECPDWD--AYYVAFNEEEELLLMAYEDLHDVQTTNAWFLDSGCSNHMCGNRAWFKEVD 320

Query: 824  DSFRHVVRLGNNTKMNVHGRGSVKLRINGVIHVFTEVYYIPELKNNLLSLGQLQERGLAI 645
            D+F+  V+LGNNT+M V G+GSV+L I GV HV T+V+ +PELKNNLLS+GQLQE+GL +
Sbjct: 321  DTFKQHVKLGNNTRMEVTGKGSVRLNIKGVTHVITDVFLVPELKNNLLSIGQLQEKGLTV 380

Query: 644  LIQSGMCQIYHPHRGLIIQTNMTTNRMFVLFAEA--QNNSCFNTTTQDLAHLWHCRYAHL 471
            + QSG C++YHP +GLI++TNMTTN MF+LFA++  + +SCF+ +TQDL+ LWH RYAHL
Sbjct: 381  MFQSGTCKLYHPDKGLILETNMTTNIMFILFAQSATKKDSCFHISTQDLSSLWHHRYAHL 440

Query: 470  GYKGLKTLQSNEMVTGLPK-LPNSSIVCTDCMKGKQHRDPIPKKSQWRANQKLQLVHADI 294
             +KGL+ LQS  MV GLP  L  +  VC DC KGKQHRDPIPKKSQWRA QKL+L+HADI
Sbjct: 441  SHKGLRILQSKGMVRGLPSSLSTTENVCEDCTKGKQHRDPIPKKSQWRAKQKLELIHADI 500

Query: 293  CGPITPASNSKKRYILCFIDDFSRKAWIYFLLEKSEAFYYFKCFKMLVEKETGLPIKCLR 114
            CGPITP+SNS+KRY LCFIDD+SRK WIYFL +KSEAF+YF+CFK LVEKE+GL IKCL 
Sbjct: 501  CGPITPSSNSQKRYFLCFIDDYSRKTWIYFLTKKSEAFHYFQCFKNLVEKESGLMIKCLI 560

Query: 113  TDRGGEFNSMEFNEFCKQNGI*RQLTTAYTPQQNGVA 3
            TDRGGEF S+EFNEFC++ GI RQLT AYTPQQNGVA
Sbjct: 561  TDRGGEFTSLEFNEFCQKTGIKRQLTIAYTPQQNGVA 597



 Score =  291 bits (745), Expect(2) = 0.0
 Identities = 148/267 (55%), Positives = 184/267 (68%), Gaps = 2/267 (0%)
 Frame = -2

Query: 1797 MAAEGNTGFAQPSIPRFDGDYDHWSMLMENFLRSKEYWNLIETGYSEPGAGEILTATQXX 1618
            M    ++ F Q +IPRFDG YDHWSMLMENFLRSKEYW+L+E G+ +   G   T  Q  
Sbjct: 1    MTNANDSSFVQLAIPRFDGHYDHWSMLMENFLRSKEYWSLVEIGFEDSEKGSAATEDQKK 60

Query: 1617 XXXXXXXXXXXXKNYLFQSIDKSILKTILQKNTSKQIWESMKRKFQGNXXXXXXXXXXXX 1438
                        KNYL Q+ID++IL+TIL+KNTSK+IW+S+KRK++GN            
Sbjct: 61   KRDEMKLKDFQVKNYLIQAIDRTILETILKKNTSKEIWDSIKRKYEGNARVKRLILQGLR 120

Query: 1437 RDFEILEMKVGESVSDYFSRVMLVANNMRNYGEDMPDVKVVEKILRSLTEQFNYIVCSIE 1258
            ++FEILEMK GES+++YFSRVM VA+ MR YGE M DV +VEKILRSLT++FNYIVCSIE
Sbjct: 121  KEFEILEMKSGESITNYFSRVMSVASKMRTYGEQMQDVIIVEKILRSLTDRFNYIVCSIE 180

Query: 1257 ESKDIDSLTVDELQSSLVVHEQKFRKRDNEEHALKISLEEK--IATXXXXXXXXXXXXXX 1084
            ESKDIDSL++DELQSSL+VHEQKF K+  EE ALK+S EE+                   
Sbjct: 181  ESKDIDSLSIDELQSSLIVHEQKFHKKHEEEQALKVSSEERNDNGGRGRGSYRGRGRGRG 240

Query: 1083 XXXXXXXRATVECYKCHKLGHFQYECP 1003
                   RAT+EC+KCHKLGH++YECP
Sbjct: 241  RGRGRQNRATIECFKCHKLGHYKYECP 267


>emb|CBI37296.3| unnamed protein product [Vitis vinifera]
          Length = 3048

 Score =  435 bits (1119), Expect(2) = 0.0
 Identities = 204/335 (60%), Positives = 256/335 (76%), Gaps = 2/335 (0%)
 Frame = -3

Query: 1001 YECPSWDKEANYAEFNETEELLLMSYLEINNAKTEEAWFLDSGCSNHMCGNKSIFSEFDD 822
            +ECP  +  A YA+    EE+LLM+Y+++N    E+ WFLDSGCSNHMCG K  FS+FD 
Sbjct: 285  WECPHRETGAYYAK--NQEEMLLMAYVDLNKTSREDTWFLDSGCSNHMCGKKDYFSDFDG 342

Query: 821  SFRHVVRLGNNTKMNVHGRGSVKLRINGVIHVFTEVYYIPELKNNLLSLGQLQERGLAIL 642
            +FR  V+LGNNT M+V G+G+V+L++N +  + T V+Y+PELKNNLLS+GQLQE+GL IL
Sbjct: 343  TFRDSVKLGNNTSMSVLGKGNVRLKVNEMTQIITGVFYVPELKNNLLSIGQLQEKGLTIL 402

Query: 641  IQSGMCQIYHPHRGLIIQTNMTTNRMFVLFAEAQ--NNSCFNTTTQDLAHLWHCRYAHLG 468
             Q G C+++H  +GLI+ T M++NRMF+L+A +Q  +++CFNT T+D+  LWHCRY HL 
Sbjct: 403  FQHGKCKVFHSQKGLIMDTKMSSNRMFMLYALSQPISSTCFNTVTEDILQLWHCRYGHLS 462

Query: 467  YKGLKTLQSNEMVTGLPKLPNSSIVCTDCMKGKQHRDPIPKKSQWRANQKLQLVHADICG 288
            ++GLKTLQ  +MV GLP+    S +C DC+ GKQHR  IPKKS WRA + LQLVHADICG
Sbjct: 463  FQGLKTLQQRKMVNGLPQFQPPSKLCKDCLVGKQHRSSIPKKSNWRAAEILQLVHADICG 522

Query: 287  PITPASNSKKRYILCFIDDFSRKAWIYFLLEKSEAFYYFKCFKMLVEKETGLPIKCLRTD 108
            PI P SNSKKRY+L F DDFSRK W+YFL+EKSEAF  FK FK  VEKET   ++CLRTD
Sbjct: 523  PINPISNSKKRYLLTFTDDFSRKTWVYFLVEKSEAFAVFKSFKTYVEKETSSFLRCLRTD 582

Query: 107  RGGEFNSMEFNEFCKQNGI*RQLTTAYTPQQNGVA 3
            RGGEF S EF  FC  +GI RQLT AYTPQQNGVA
Sbjct: 583  RGGEFTSQEFAIFCDVHGIRRQLTAAYTPQQNGVA 617



 Score =  248 bits (633), Expect(2) = 0.0
 Identities = 126/260 (48%), Positives = 165/260 (63%), Gaps = 1/260 (0%)
 Frame = -2

Query: 1779 TGFAQPSIPRFDGDYDHWSMLMENFLRSKEYWNLIETGYSEPGAGEILTATQXXXXXXXX 1600
            + F QP+I +FDG YDHW+MLMENFLRSKEYW L+  G        +LT  Q        
Sbjct: 29   SSFVQPAISKFDGYYDHWAMLMENFLRSKEYWGLVVNGVPAVAEDAVLTDAQRKHIEDQQ 88

Query: 1599 XXXXXXKNYLFQSIDKSILKTILQKNTSKQIWESMKRKFQGNXXXXXXXXXXXXRDFEIL 1420
                  KNYLFQ++D+SIL+TIL K T+K IW+SMK+KFQG             ++F+IL
Sbjct: 89   LKDLKAKNYLFQALDRSILETILNKKTTKDIWDSMKQKFQGTTRVKRGNLQALRKEFKIL 148

Query: 1419 EMKVGESVSDYFSRVMLVANNMRNYGEDMPDVKVVEKILRSLTEQFNYIVCSIEESKDID 1240
             MK GE+V++YFSR + +AN M+  GED  +  VVEKILRS+T +F+Y+VCSIEESKD+D
Sbjct: 149  HMKSGETVNEYFSRTLAIANKMKVNGEDKGNTAVVEKILRSMTSKFDYVVCSIEESKDLD 208

Query: 1239 SLTVDELQSSLVVHEQKFRKRD-NEEHALKISLEEKIATXXXXXXXXXXXXXXXXXXXXX 1063
            +LT+DELQSSL+VHEQ+       EE ALK++  +   +                     
Sbjct: 209  TLTIDELQSSLLVHEQRMTSHVLEEEQALKVTHGDHSGSRGRGHGNYRGRGRGRNRRFFD 268

Query: 1062 RATVECYKCHKLGHFQYECP 1003
            +AT+ECY CHKLGHF +ECP
Sbjct: 269  KATMECYNCHKLGHFAWECP 288


>emb|CAN72600.1| hypothetical protein VITISV_036712 [Vitis vinifera]
          Length = 1246

 Score =  381 bits (979), Expect(2) = 0.0
 Identities = 180/301 (59%), Positives = 223/301 (74%)
 Frame = -3

Query: 1004 QYECPSWDKEANYAEFNETEELLLMSYLEINNAKTEEAWFLDSGCSNHMCGNKSIFSEFD 825
            QY CP+W+KEANYAE  E E++LLM+Y+E + A   + WFLD GCSNHMCG+  +FSE D
Sbjct: 261  QYNCPTWNKEANYAELEEHEDVLLMAYVEEHEAMRNDVWFLDFGCSNHMCGDARMFSELD 320

Query: 824  DSFRHVVRLGNNTKMNVHGRGSVKLRINGVIHVFTEVYYIPELKNNLLSLGQLQERGLAI 645
            +SFR  V+LGNN+K+ V GRG+V+L++NG  +V T V+Y+PELKNNLLS+GQLQE+GLAI
Sbjct: 321  ESFRQQVKLGNNSKITVKGRGNVRLQLNGFNYVLTVVFYVPELKNNLLSIGQLQEKGLAI 380

Query: 644  LIQSGMCQIYHPHRGLIIQTNMTTNRMFVLFAEAQNNSCFNTTTQDLAHLWHCRYAHLGY 465
            +I  G+C+IYHP++GLIIQT M+TNRMF L A  Q                         
Sbjct: 381  MIHDGLCKIYHPNKGLIIQTAMSTNRMFTLLANKQE------------------------ 416

Query: 464  KGLKTLQSNEMVTGLPKLPNSSIVCTDCMKGKQHRDPIPKKSQWRANQKLQLVHADICGP 285
                  ++  MV GLP L  +++VCTDC+ GKQHRDPIPKKS WRA +KLQL+HA+ICGP
Sbjct: 417  ------KNENMVHGLPHLLPTTLVCTDCLNGKQHRDPIPKKSAWRATKKLQLIHANICGP 470

Query: 284  ITPASNSKKRYILCFIDDFSRKAWIYFLLEKSEAFYYFKCFKMLVEKETGLPIKCLRTDR 105
            +TP SN KKRY LCFIDDFSRK W+YFL+EKS+A   FKCFK LVEKETG+ IKCLRTDR
Sbjct: 471  VTPTSNGKKRYALCFIDDFSRKTWVYFLVEKSKALNSFKCFKRLVEKETGMYIKCLRTDR 530

Query: 104  G 102
            G
Sbjct: 531  G 531



 Score =  295 bits (755), Expect(2) = 0.0
 Identities = 148/265 (55%), Positives = 183/265 (69%)
 Frame = -2

Query: 1797 MAAEGNTGFAQPSIPRFDGDYDHWSMLMENFLRSKEYWNLIETGYSEPGAGEILTATQXX 1618
            M++     FAQP+IP F+G YDHWSMLMENFLRSKEYW+L+ETGY EP A   +T  Q  
Sbjct: 1    MSSTSEGQFAQPAIPCFNGHYDHWSMLMENFLRSKEYWSLVETGYDEPQANAAMTKAQQK 60

Query: 1617 XXXXXXXXXXXXKNYLFQSIDKSILKTILQKNTSKQIWESMKRKFQGNXXXXXXXXXXXX 1438
                        KNY+FQ+ID++IL+TILQKNTSKQIW+SMK+K++ N            
Sbjct: 61   RLDEMKLKDLKVKNYMFQAIDRTILETILQKNTSKQIWDSMKKKYEENARVKRSILQTLR 120

Query: 1437 RDFEILEMKVGESVSDYFSRVMLVANNMRNYGEDMPDVKVVEKILRSLTEQFNYIVCSIE 1258
            RDFE LEMK GE ++DYFSRVM V+N MR +GE + +V +VEKILRSLT+ FNYIVCSIE
Sbjct: 121  RDFETLEMKSGECITDYFSRVMSVSNKMRFHGEQIREVTIVEKILRSLTDNFNYIVCSIE 180

Query: 1257 ESKDIDSLTVDELQSSLVVHEQKFRKRDNEEHALKISLEEKIATXXXXXXXXXXXXXXXX 1078
            ESKD D+LT++ELQ SL+VHEQKF K+  EE ALK++ +E+I                  
Sbjct: 181  ESKDTDTLTINELQISLIVHEQKFHKKPVEEQALKVTTDERIGAGGHGRNGYRGRGRGRG 240

Query: 1077 XXXXXRATVECYKCHKLGHFQYECP 1003
                 RATVECY+CH+LGHFQY CP
Sbjct: 241  RQAFNRATVECYRCHQLGHFQYNCP 265


>emb|CAN65188.1| hypothetical protein VITISV_004365 [Vitis vinifera]
          Length = 1265

 Score =  405 bits (1040), Expect(2) = 0.0
 Identities = 199/335 (59%), Positives = 242/335 (72%), Gaps = 2/335 (0%)
 Frame = -3

Query: 1004 QYECPSWDKEANYAEFNETEELLLMSYLEINNAKTEEAWFLDSGCSNHMCGNKSIFSEFD 825
            ++ECPS + EANYA+  E  E+LLM+Y+++N A  E+ WFLDSGCSNHMCG K  F +FD
Sbjct: 258  KWECPSKENEANYADTQE--EMLLMAYVDMNKAHREDMWFLDSGCSNHMCGTKEYFLDFD 315

Query: 824  DSFRHVVRLGNNTKMNVHGRGSVKLRINGVIHVFTEVYYIPELKNNLLSLGQLQERGLAI 645
             SFR  V+LGNNT M V G+G               V+Y+PELKNNLLS+GQLQE+GL I
Sbjct: 316  GSFRDSVKLGNNTSMVVTGKG---------------VFYVPELKNNLLSIGQLQEKGLTI 360

Query: 644  LIQSGMCQIYHPHRGLIIQTNMTTNRMFVLFAEAQN--NSCFNTTTQDLAHLWHCRYAHL 471
            L QSG C+++HP RG+I +  M++NRMF+L A +Q   ++CFN  T+D+ HLWHCRY HL
Sbjct: 361  LFQSGKCKVFHPERGVITEMKMSSNRMFMLHAISQPIASTCFNAITEDIVHLWHCRYGHL 420

Query: 470  GYKGLKTLQSNEMVTGLPKLPNSSIVCTDCMKGKQHRDPIPKKSQWRANQKLQLVHADIC 291
             +KGLKTLQ  +MV GLP+L +   +C DC+ GKQ R   P KS WRA+Q L LVHADI 
Sbjct: 421  SFKGLKTLQQKKMVNGLPQLKSPLRLCKDCLVGKQQRYSFPWKSTWRASQILXLVHADIX 480

Query: 290  GPITPASNSKKRYILCFIDDFSRKAWIYFLLEKSEAFYYFKCFKMLVEKETGLPIKCLRT 111
            GPI P SNSKKRY++ F DDFSRK W+YFL+EKSEAF  FK FK+ VEKET   I+ L T
Sbjct: 481  GPIKPISNSKKRYLITFTDDFSRKTWVYFLIEKSEAFVVFKRFKIHVEKETNSFIRALXT 540

Query: 110  DRGGEFNSMEFNEFCKQNGI*RQLTTAYTPQQNGV 6
            DRGGEF S EF  FC  NGI RQLT AYTPQQN V
Sbjct: 541  DRGGEFTSXEFTNFCDVNGIRRQLTAAYTPQQNXV 575



 Score =  261 bits (667), Expect(2) = 0.0
 Identities = 127/257 (49%), Positives = 171/257 (66%)
 Frame = -2

Query: 1773 FAQPSIPRFDGDYDHWSMLMENFLRSKEYWNLIETGYSEPGAGEILTATQXXXXXXXXXX 1594
            F QP++P+FDG YDHW+MLMENFLRSKEYW L+E+G      G +LT  Q          
Sbjct: 6    FVQPTVPKFDGHYDHWAMLMENFLRSKEYWGLVESGIPTVAEGVVLTDAQRKNIDDQKLK 65

Query: 1593 XXXXKNYLFQSIDKSILKTILQKNTSKQIWESMKRKFQGNXXXXXXXXXXXXRDFEILEM 1414
                KNYLFQ++D+S+L+TIL K+T+K IW+S+K+K+QG             ++FE+L M
Sbjct: 66   DLKAKNYLFQALDRSVLETILNKDTAKNIWDSLKQKYQGTTRVKRAHLQALRKEFELLHM 125

Query: 1413 KVGESVSDYFSRVMLVANNMRNYGEDMPDVKVVEKILRSLTEQFNYIVCSIEESKDIDSL 1234
            K GESV++YF+R + +AN M+  GE+  DV VVEKILRS+T +F+Y+VCSIEESKD ++L
Sbjct: 126  KAGESVNEYFARTLTIANKMKANGENKGDVVVVEKILRSMTPKFDYVVCSIEESKDTNTL 185

Query: 1233 TVDELQSSLVVHEQKFRKRDNEEHALKISLEEKIATXXXXXXXXXXXXXXXXXXXXXRAT 1054
            T+DELQSSL+VHEQ+      EEHALKI+  ++                        +AT
Sbjct: 186  TIDELQSSLLVHEQRMSSHVEEEHALKITHGDQYGGRGRGRGSFGGRGRGRGRQYFNKAT 245

Query: 1053 VECYKCHKLGHFQYECP 1003
            VECY CHKLG+F++ECP
Sbjct: 246  VECYNCHKLGNFKWECP 262


>gb|KYP60819.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 722

 Score =  403 bits (1035), Expect(2) = e-180
 Identities = 195/341 (57%), Positives = 246/341 (72%), Gaps = 7/341 (2%)
 Frame = -3

Query: 1004 QYECPSWDKEANYAEFNETEELLLMSYLEINNAKTEEAWFLDSGCSNHMCGNKSIFSEFD 825
            QYECP++   A   E ++ +E+LLMSY+E+   K +E WFLDSGCSNHM G++  F+E D
Sbjct: 238  QYECPTYANYAEDTELDDEQEMLLMSYVEMQGDKRDEIWFLDSGCSNHMSGDRKWFTELD 297

Query: 824  DSFRHVVRLGNNTKMNVHGRGSVKLRINGVIHVFTEVYYIPELKNNLLSLGQLQERGLAI 645
             SFRH V+LGN+ K+NV G+G+V++++ G     TEV+Y P+LK+NLLS+GQLQER L+I
Sbjct: 298  QSFRHSVKLGNDFKLNVMGKGNVRMKLGGRTVTITEVFYTPDLKSNLLSIGQLQERNLSI 357

Query: 644  LIQSGMCQIYHPHRGLIIQTNMTTNRMFVLFAEA-------QNNSCFNTTTQDLAHLWHC 486
            LI++G C IYH   GLII+T ++ NRMFVL A            +C N T++++  LWH 
Sbjct: 358  LIKNGCCSIYHDTEGLIIRTTISANRMFVLTASIPVVDTNISKAACLNVTSENITSLWHQ 417

Query: 485  RYAHLGYKGLKTLQSNEMVTGLPKLPNSSIVCTDCMKGKQHRDPIPKKSQWRANQKLQLV 306
            R+ HL  KGL+TL   +MV GLP L N   +CT CM GKQ R   P+KS WRA++ LQL+
Sbjct: 418  RFGHLNMKGLRTLAYRKMVQGLPILKNQFKLCTICMTGKQQRHSFPQKSTWRASKPLQLI 477

Query: 305  HADICGPITPASNSKKRYILCFIDDFSRKAWIYFLLEKSEAFYYFKCFKMLVEKETGLPI 126
            H+DICGPITP S+S KRYIL FIDD+SRK W YFL  KSEAF  FK FK L+EK TG  I
Sbjct: 478  HSDICGPITPESHSHKRYILTFIDDYSRKMWSYFLHAKSEAFDTFKRFKSLIEKATGYYI 537

Query: 125  KCLRTDRGGEFNSMEFNEFCKQNGI*RQLTTAYTPQQNGVA 3
             CLRTDRGGEF S EFN++C  NGI RQLTT Y+PQQNGVA
Sbjct: 538  TCLRTDRGGEFTSSEFNDYCSSNGITRQLTTPYSPQQNGVA 578



 Score =  259 bits (662), Expect(2) = e-180
 Identities = 135/263 (51%), Positives = 172/263 (65%)
 Frame = -2

Query: 1791 AEGNTGFAQPSIPRFDGDYDHWSMLMENFLRSKEYWNLIETGYSEPGAGEILTATQXXXX 1612
            A+GN+     SIP+FDGDYDHWSMLMEN LRSKEYW+++E GY EP   E LT  +    
Sbjct: 2    ADGNSFL---SIPKFDGDYDHWSMLMENLLRSKEYWSVVEQGYEEPKILESLTGAERKTL 58

Query: 1611 XXXXXXXXXXKNYLFQSIDKSILKTILQKNTSKQIWESMKRKFQGNXXXXXXXXXXXXRD 1432
                      KNYLFQSIDK+ILKTI  K TSK +W+SMK+K+QGN            R+
Sbjct: 59   ETQKLNDLRAKNYLFQSIDKNILKTITNKATSKALWDSMKQKYQGNARVQRAQLQRLRRE 118

Query: 1431 FEILEMKVGESVSDYFSRVMLVANNMRNYGEDMPDVKVVEKILRSLTEQFNYIVCSIEES 1252
            FEILEM+ GE V+DY SRVM++AN+MR  GE M D  +VEKILR+L++++NYIVCSIEES
Sbjct: 119  FEILEMQNGECVNDYISRVMIIANDMRGAGEAMEDGHIVEKILRTLSDKYNYIVCSIEES 178

Query: 1251 KDIDSLTVDELQSSLVVHEQKFRKRDNEEHALKISLEEKIATXXXXXXXXXXXXXXXXXX 1072
            KDI+ + VDELQSSL++HE K ++++  E ALK++ +                       
Sbjct: 179  KDINEMMVDELQSSLLIHEHKIKRQEMTEQALKVTGDYSAPRVTEH-------------- 224

Query: 1071 XXXRATVECYKCHKLGHFQYECP 1003
                  +ECY+C KLGHFQYECP
Sbjct: 225  -----LIECYRCRKLGHFQYECP 242


>emb|CAB75932.1| putative protein [Arabidopsis thaliana]
          Length = 1339

 Score =  432 bits (1112), Expect(2) = e-179
 Identities = 204/338 (60%), Positives = 253/338 (74%), Gaps = 4/338 (1%)
 Frame = -3

Query: 1004 QYECPSWDKEANYAEFNETEELLLMSYLEINNAKTEEAWFLDSGCSNHMCGNKSIFSEFD 825
            QYECP W+K ANYAE  E EELLLM+Y+E N A  +E WFLDSGCSNHM G+K  FSE +
Sbjct: 262  QYECPEWEKNANYAELEEEEELLLMAYVEQNQANRDEVWFLDSGCSNHMTGSKEWFSELE 321

Query: 824  DSFRHVVRLGNNTKMNVHGRGSVKLRINGVIHVFTEVYYIPELKNNLLSLGQLQERGLAI 645
            + F   V+LGN+T+M+V G+GSVK+++NGV  V  EVYY+PEL+NNLLSLGQLQERGLAI
Sbjct: 322  EGFNRTVKLGNDTRMSVVGKGSVKVKVNGVTQVIPEVYYVPELRNNLLSLGQLQERGLAI 381

Query: 644  LIQSGMCQIYHPHRGLIIQTNMTTNRMFVLFAEAQNNSCFNTTTQDLA----HLWHCRYA 477
            LI+ G C++YHP +G I++TNM+ NRMF L A     +     T+++     HLWHCR+ 
Sbjct: 382  LIRDGTCKVYHPSKGAIMETNMSGNRMFFLLASKPQKNSLCLQTEEVMDKENHLWHCRFG 441

Query: 476  HLGYKGLKTLQSNEMVTGLPKLPNSSIVCTDCMKGKQHRDPIPKKSQWRANQKLQLVHAD 297
            HL  +GLK L   +MV GLP L  +  +C  C+ GKQHR+ + KK+ W+++ +LQLVH+D
Sbjct: 442  HLNQEGLKLLAHKKMVIGLPILKATKEICAICLTGKQHRESMSKKTSWKSSTQLQLVHSD 501

Query: 296  ICGPITPASNSKKRYILCFIDDFSRKAWIYFLLEKSEAFYYFKCFKMLVEKETGLPIKCL 117
            ICGPITP S+S KRYIL FIDDF+RK W+YFL EKSEAF  FK FK  VEKE G  + CL
Sbjct: 502  ICGPITPISHSGKRYILSFIDDFTRKTWVYFLHEKSEAFATFKIFKASVEKEIGAFLTCL 561

Query: 116  RTDRGGEFNSMEFNEFCKQNGI*RQLTTAYTPQQNGVA 3
            RTDRGGEF S EF EFC+ +GI RQLT A+TPQQNGVA
Sbjct: 562  RTDRGGEFTSNEFGEFCRSHGISRQLTAAFTPQQNGVA 599



 Score =  226 bits (577), Expect(2) = e-179
 Identities = 121/260 (46%), Positives = 154/260 (59%), Gaps = 3/260 (1%)
 Frame = -2

Query: 1773 FAQPSIPRFDGDYDHWSMLMENFLRSKEYWNLIETGYSEPGAGEI-LTATQXXXXXXXXX 1597
            F QP+IPRFDG YD WSM MENFLRS+E W L+E G      G   ++  Q         
Sbjct: 7    FVQPAIPRFDGYYDFWSMTMENFLRSRELWRLVEEGIPAIVVGTTPVSEAQRSAVEEAKL 66

Query: 1596 XXXXXKNYLFQSIDKSILKTILQKNTSKQIWESMKRKFQGNXXXXXXXXXXXXRDFEILE 1417
                 KN+LFQ+ID+ IL+TIL K+TSK IWESMK+K+QG+            ++FE+L 
Sbjct: 67   KDLKVKNFLFQAIDREILETILDKSTSKAIWESMKKKYQGSTKVKRAQLQALRKEFELLA 126

Query: 1416 MKVGESVSDYFSRVMLVANNMRNYGEDMPDVKVVEKILRSLTEQFNYIVCSIEESKDIDS 1237
            MK GE +  +  R + V N M+  GE M    +V KILRSLT +FNY+VCSIEES D+ +
Sbjct: 127  MKEGEKIDTFLGRTLTVVNKMKTNGEVMEQSTIVSKILRSLTPKFNYVVCSIEESNDLST 186

Query: 1236 LTVDELQSSLVVHEQKFRKRDNEEHALKISLEEKIA--TXXXXXXXXXXXXXXXXXXXXX 1063
            L++DEL  SL+VHEQ+      EE ALK++ EE+ +                        
Sbjct: 187  LSIDELHGSLLVHEQRLNGHVQEEQALKVTHEERPSQGRGRGVFRGSRGRGRGRGRSGTN 246

Query: 1062 RATVECYKCHKLGHFQYECP 1003
            RA VECYKCH LGHFQYECP
Sbjct: 247  RAIVECYKCHNLGHFQYECP 266


>gb|KOM33859.1| hypothetical protein LR48_Vigan02g000900 [Vigna angularis]
          Length = 1349

 Score =  425 bits (1092), Expect(2) = e-177
 Identities = 209/343 (60%), Positives = 254/343 (74%), Gaps = 9/343 (2%)
 Frame = -3

Query: 1004 QYECPSWDKEANYAEFNET-EELLLMSYLEINNAKTEEAWFLDSGCSNHMCGNKSIFSEF 828
            QYECP W+++A+YAE +E  EELLL++Y E+++   E+ WFLDSGCSNHM G+K  FS+F
Sbjct: 265  QYECPDWERQAHYAELDEEDEELLLVAYEELHHTTHEDVWFLDSGCSNHMTGSKEWFSDF 324

Query: 827  DDSFRHVVRLGNNTKMNVHGRGSVKLRINGVIHVFTEVYYIPELKNNLLSLGQLQERGLA 648
            ++     V+LGNNT M V G+G ++++I+G   V ++VY +PELKNNLLSLGQLQE+GL+
Sbjct: 325  EEGLCKTVKLGNNTTMKVVGKGCIRVKIHGFTQVISDVYLVPELKNNLLSLGQLQEKGLS 384

Query: 647  ILIQSGMCQIYHPHRGLIIQTNMTTNRMFVLFAEA--------QNNSCFNTTTQDLAHLW 492
            ILIQ G C+I+HP +GLII + M +NRMF + A A        Q NS F+  T    HLW
Sbjct: 385  ILIQQGSCKIFHPEKGLIIHSKMKSNRMFYVTACATPKESMCMQTNSSFDQET----HLW 440

Query: 491  HCRYAHLGYKGLKTLQSNEMVTGLPKLPNSSIVCTDCMKGKQHRDPIPKKSQWRANQKLQ 312
            HCR+ HL Y GL TL S EMVTGLP L   + +C  C+ GKQ R+P PKK  WRA+++LQ
Sbjct: 441  HCRFCHLSYGGLNTLASKEMVTGLPPLKFQNRICETCLIGKQKREPKPKKCLWRASKQLQ 500

Query: 311  LVHADICGPITPASNSKKRYILCFIDDFSRKAWIYFLLEKSEAFYYFKCFKMLVEKETGL 132
            L+HADICGPITP+SNS KRYIL FIDDFSRK WIYFL EKSEA   FK FK  VEKE  +
Sbjct: 501  LIHADICGPITPSSNSNKRYILTFIDDFSRKTWIYFLQEKSEALTMFKRFKASVEKEADM 560

Query: 131  PIKCLRTDRGGEFNSMEFNEFCKQNGI*RQLTTAYTPQQNGVA 3
             I CLRTDRGGEF SMEF EFCK  GI RQLT AYTPQQNGVA
Sbjct: 561  CITCLRTDRGGEFTSMEFEEFCKTQGISRQLTAAYTPQQNGVA 603



 Score =  228 bits (580), Expect(2) = e-177
 Identities = 119/264 (45%), Positives = 159/264 (60%), Gaps = 7/264 (2%)
 Frame = -2

Query: 1773 FAQPSIPRFDGDYDHWSMLMENFLRSKEYWNLIETGYSEPGAGEILTATQXXXXXXXXXX 1594
            FAQP+IP+FDG YD W+M MENFLRSKE W+LIE G      G +LT  Q          
Sbjct: 6    FAQPAIPKFDGHYDFWAMTMENFLRSKEMWHLIEEGIPVFVPGTVLTEAQQKIIEEAKLK 65

Query: 1593 XXXXKNYLFQSIDKSILKTILQKNTSKQIWESMKRKFQGNXXXXXXXXXXXXRDFEILEM 1414
                KN+LF++ID+ IL+TI+ K+TSK+IW SM+ K+QG+            R+FE+  M
Sbjct: 66   DLNVKNFLFRAIDREILETIINKSTSKEIWSSMQTKYQGSTRVKRANLQALRREFELHTM 125

Query: 1413 KVGESVSDYFSRVMLVANNMRNYGEDMPDVKVVEKILRSLTEQFNYIVCSIEESKDIDSL 1234
            K GESV +Y  R++ +   M++ GE+M +  +V KILRSLT +FNY+VCSIEES D+D L
Sbjct: 126  KEGESVDNYIGRLLHIVTKMKSNGEEMKENTIVSKILRSLTLKFNYVVCSIEESNDLDVL 185

Query: 1233 TVDELQSSLVVHEQKFRKRDNEEHALKI-------SLEEKIATXXXXXXXXXXXXXXXXX 1075
            T+DEL  SL+VHEQ+ +    EEH LK+       S   +                    
Sbjct: 186  TIDELHGSLLVHEQRMQDFQIEEHVLKVTHTNDNGSSRGRGGRGAFRGGGRNRTGRGRGR 245

Query: 1074 XXXXRATVECYKCHKLGHFQYECP 1003
                ++ +EC+KCHKLGHFQYECP
Sbjct: 246  QSLNKSLIECFKCHKLGHFQYECP 269


>gb|KYP63625.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 930

 Score =  404 bits (1037), Expect(2) = e-173
 Identities = 198/339 (58%), Positives = 247/339 (72%), Gaps = 5/339 (1%)
 Frame = -3

Query: 1004 QYECPSWDKEANYAEF---NETEELLLMSYLEINNAKTEEAWFLDSGCSNHMCGNKSIFS 834
            Q+EC       N+AE    +  E +LLM+Y+E    +  + WFLDS CSNHMCG K  FS
Sbjct: 236  QWECKQG--VTNFAESQVESAEEHMLLMAYVETKEQQKTDVWFLDSRCSNHMCGKKEYFS 293

Query: 833  EFDDSFRHVVRLGNNTKMNVHGRGSVKLRINGVIHVFTEVYYIPELKNNLLSLGQLQERG 654
            E D++F   V+LGNN+ M V+G+G+++L +NGVI + +  +Y+PELKNNLL LGQLQE+G
Sbjct: 294  ELDETFSDSVKLGNNSNMVVNGKGNIRLDVNGVISIISGGFYVPELKNNLLGLGQLQEKG 353

Query: 653  LAILIQSGMCQIYHPHRGLIIQTNMTTNRMFVLFAEAQN--NSCFNTTTQDLAHLWHCRY 480
            L+IL Q G C+IYHP +GLI+Q+NM++NRMF+L A +     +CFNT T+D+A LWHCR+
Sbjct: 354  LSILFQQGKCKIYHPDKGLIMQSNMSSNRMFILHAISLPVAPTCFNTVTEDVAQLWHCRF 413

Query: 479  AHLGYKGLKTLQSNEMVTGLPKLPNSSIVCTDCMKGKQHRDPIPKKSQWRANQKLQLVHA 300
             HL +KGL+TLQ   MV GL  L   S +C D + GKQHRD  P KS WRA+Q LQLVHA
Sbjct: 414  GHLSFKGLQTLQQKGMVEGLAMLKPPSKLCKDYLIGKQHRDSFPMKSSWRASQILQLVHA 473

Query: 299  DICGPITPASNSKKRYILCFIDDFSRKAWIYFLLEKSEAFYYFKCFKMLVEKETGLPIKC 120
            DICGPI P SNSKKRY+L FIDDFSRK W+YFL EKSEAF  FK FK+ VEK T + +K 
Sbjct: 474  DICGPIKPVSNSKKRYLLTFIDDFSRKTWVYFLAEKSEAFTVFKSFKLHVEKATNMSLKG 533

Query: 119  LRTDRGGEFNSMEFNEFCKQNGI*RQLTTAYTPQQNGVA 3
            LRTD GGEF S EFN F   +G+ RQLT AY+PQQNGVA
Sbjct: 534  LRTDLGGEFTSREFNNFFHAHGVQRQLTAAYSPQQNGVA 572



 Score =  235 bits (600), Expect(2) = e-173
 Identities = 123/264 (46%), Positives = 162/264 (61%)
 Frame = -2

Query: 1797 MAAEGNTGFAQPSIPRFDGDYDHWSMLMENFLRSKEYWNLIETGYSEPGAGEILTATQXX 1618
            MA EG   F QP++PRFDG Y HW+MLMENFLRSKEYW ++E G S    G  L   Q  
Sbjct: 1    MATEGT--FVQPAVPRFDGHYSHWAMLMENFLRSKEYWVVVENGVSAAAEGVTLFEAQKK 58

Query: 1617 XXXXXXXXXXXXKNYLFQSIDKSILKTILQKNTSKQIWESMKRKFQGNXXXXXXXXXXXX 1438
                        KNYLFQ++D+SIL+TI+ K+TSK IW+SMK+K++G             
Sbjct: 59   TYEKQKLKDLNAKNYLFQALDRSILETIINKDTSKSIWDSMKKKYEGTTRVKRAHLQALR 118

Query: 1437 RDFEILEMKVGESVSDYFSRVMLVANNMRNYGEDMPDVKVVEKILRSLTEQFNYIVCSIE 1258
            +DFE   MK GESV++Y  RV++++N M+   +D+ +V VVEKILRS+T +FNY+VCSIE
Sbjct: 119  KDFETAHMKEGESVNEYLDRVLVISNKMKANCDDLKEVAVVEKILRSMTSEFNYVVCSIE 178

Query: 1257 ESKDIDSLTVDELQSSLVVHEQKFRKRDNEEHALKISLEEKIATXXXXXXXXXXXXXXXX 1078
            ESKD   L++DELQSSL+VHEQ+  + ++       S +                     
Sbjct: 179  ESKDTSILSIDELQSSLLVHEQRMGRWNSGGRGRGRSRQN-------------------- 218

Query: 1077 XXXXXRATVECYKCHKLGHFQYEC 1006
                 +ATVECY CHKLGHFQ+EC
Sbjct: 219  ---IDKATVECYNCHKLGHFQWEC 239


>gb|KYP60712.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1110

 Score =  403 bits (1035), Expect(2) = e-171
 Identities = 195/341 (57%), Positives = 246/341 (72%), Gaps = 7/341 (2%)
 Frame = -3

Query: 1004 QYECPSWDKEANYAEFNETEELLLMSYLEINNAKTEEAWFLDSGCSNHMCGNKSIFSEFD 825
            QYECP++   A   E ++ +E+LLMSY+E+   K +E WFLDSGCSNHM G++  F+E D
Sbjct: 217  QYECPTYANYAEDTELDDEQEMLLMSYVEMQGDKRDEIWFLDSGCSNHMSGDRKWFTELD 276

Query: 824  DSFRHVVRLGNNTKMNVHGRGSVKLRINGVIHVFTEVYYIPELKNNLLSLGQLQERGLAI 645
             SFRH V+LGN+ K+NV G+G+V++++ G     TEV+Y P+LK+NLLS+GQLQER L+I
Sbjct: 277  QSFRHSVKLGNDFKLNVMGKGNVRMKLGGRTVTITEVFYTPDLKSNLLSIGQLQERNLSI 336

Query: 644  LIQSGMCQIYHPHRGLIIQTNMTTNRMFVLFAEA-------QNNSCFNTTTQDLAHLWHC 486
            LI++G C IYH   GLII+T ++ NRMFVL A            +C N T++++  LWH 
Sbjct: 337  LIKNGCCSIYHDTEGLIIRTTISANRMFVLTASIPVVDTNISKAACLNVTSENITSLWHQ 396

Query: 485  RYAHLGYKGLKTLQSNEMVTGLPKLPNSSIVCTDCMKGKQHRDPIPKKSQWRANQKLQLV 306
            R+ HL  KGL+TL   +MV GLP L N   +CT CM GKQ R   P+KS WRA++ LQL+
Sbjct: 397  RFGHLNMKGLRTLAYRKMVQGLPILKNQFKLCTICMTGKQQRHSFPQKSTWRASKPLQLI 456

Query: 305  HADICGPITPASNSKKRYILCFIDDFSRKAWIYFLLEKSEAFYYFKCFKMLVEKETGLPI 126
            H+DICGPITP S+S KRYIL FIDD+SRK W YFL  KSEAF  FK FK L+EK TG  I
Sbjct: 457  HSDICGPITPESHSHKRYILTFIDDYSRKMWSYFLHAKSEAFDTFKRFKSLIEKATGYYI 516

Query: 125  KCLRTDRGGEFNSMEFNEFCKQNGI*RQLTTAYTPQQNGVA 3
             CLRTDRGGEF S EFN++C  NGI RQLTT Y+PQQNGVA
Sbjct: 517  TCLRTDRGGEFTSSEFNDYCSSNGITRQLTTPYSPQQNGVA 557



 Score =  229 bits (583), Expect(2) = e-171
 Identities = 120/240 (50%), Positives = 154/240 (64%)
 Frame = -2

Query: 1722 MLMENFLRSKEYWNLIETGYSEPGAGEILTATQXXXXXXXXXXXXXXKNYLFQSIDKSIL 1543
            MLMEN LRSKEYW+++E GY EP   E LT  +              KNYLFQSIDK+IL
Sbjct: 1    MLMENLLRSKEYWSVVEQGYEEPKILESLTGAERKTLETQKLNDLRAKNYLFQSIDKNIL 60

Query: 1542 KTILQKNTSKQIWESMKRKFQGNXXXXXXXXXXXXRDFEILEMKVGESVSDYFSRVMLVA 1363
            KTI  K TSK +W+SMK+K+QGN            R+FEILEM+ GE V+DY SRVM++A
Sbjct: 61   KTITNKATSKALWDSMKQKYQGNARVQRAQLQRLRREFEILEMQNGECVNDYISRVMIIA 120

Query: 1362 NNMRNYGEDMPDVKVVEKILRSLTEQFNYIVCSIEESKDIDSLTVDELQSSLVVHEQKFR 1183
            N+MR  GE M D  +VEKILR+L++++NYIVCSIEESKDI+ + VDELQSSL++HE K +
Sbjct: 121  NDMRGAGEAMEDGHIVEKILRTLSDKYNYIVCSIEESKDINEMMVDELQSSLLIHEHKIK 180

Query: 1182 KRDNEEHALKISLEEKIATXXXXXXXXXXXXXXXXXXXXXRATVECYKCHKLGHFQYECP 1003
            +++  E ALK++ +                             +ECY+C KLGHFQYECP
Sbjct: 181  RQEMTEQALKVTGDYSAPRVTEH-------------------LIECYRCRKLGHFQYECP 221


>gb|KYP57183.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 884

 Score =  395 bits (1014), Expect(2) = e-169
 Identities = 189/337 (56%), Positives = 234/337 (69%), Gaps = 3/337 (0%)
 Frame = -3

Query: 1004 QYECPSWDKEA--NYAEFNETEELLLMSYLEINNAKTEEAWFLDSGCSNHMCGNKSIFSE 831
            QYECP  +KE   N  EF    E+LLM+Y++     + + W+LDSGCSNHMCGNKS+F  
Sbjct: 237  QYECPDKEKETKVNLVEFEG--EMLLMAYIDKKENSSGDTWYLDSGCSNHMCGNKSLFYN 294

Query: 830  FDDSFRHVVRLGNNTKMNVHGRGSVKLRI-NGVIHVFTEVYYIPELKNNLLSLGQLQERG 654
             D++FR  V+LG+N+ ++V G+G +K  + N  +H  + V+YIP+LK+NL+S+GQLQERG
Sbjct: 295  MDETFRETVKLGDNSCISVMGKGDIKFHMKNNTVHTISNVFYIPDLKSNLISMGQLQERG 354

Query: 653  LAILIQSGMCQIYHPHRGLIIQTNMTTNRMFVLFAEAQNNSCFNTTTQDLAHLWHCRYAH 474
              I+IQ   CQI+HP +GLI+   MT NRMF +  +     CF+T  QD   LWH RY H
Sbjct: 355  YIIIIQQSRCQIHHPEKGLIVDAKMTANRMFPMHIQYDIQKCFSTRVQDPTWLWHLRYGH 414

Query: 473  LGYKGLKTLQSNEMVTGLPKLPNSSIVCTDCMKGKQHRDPIPKKSQWRANQKLQLVHADI 294
            L +KGLKTL    MV GLPK+   + +C DC+ GKQHRD  P    WRA Q LQLVH+DI
Sbjct: 415  LSFKGLKTLHEKNMVEGLPKINCPTEICEDCIVGKQHRDSFPHGKAWRAQQILQLVHSDI 474

Query: 293  CGPITPASNSKKRYILCFIDDFSRKAWIYFLLEKSEAFYYFKCFKMLVEKETGLPIKCLR 114
            CGPI P SN  KRY + FIDD SRK W+YFL EKSEAF  FK FK  VEKE+G  I+ LR
Sbjct: 475  CGPINPTSNGNKRYFIIFIDDHSRKTWVYFLQEKSEAFLIFKSFKSRVEKESGKYIQILR 534

Query: 113  TDRGGEFNSMEFNEFCKQNGI*RQLTTAYTPQQNGVA 3
            TDRGGEFNS  F  FC+ +GI RQLT AYTPQQNGVA
Sbjct: 535  TDRGGEFNSHNFASFCELHGIQRQLTAAYTPQQNGVA 571



 Score =  233 bits (593), Expect(2) = e-169
 Identities = 123/241 (51%), Positives = 157/241 (65%), Gaps = 1/241 (0%)
 Frame = -2

Query: 1722 MLMENFLRSKEYWNLIETGYSEPGAGEILTATQXXXXXXXXXXXXXXKNYLFQSIDKSIL 1543
            MLMENFLRSKEYW+L+E G ++P  G I+T  Q              KNYLFQ+ID++IL
Sbjct: 1    MLMENFLRSKEYWSLVEIGITKPADGTIMTEAQRKTLEDQKLKDLKTKNYLFQAIDRTIL 60

Query: 1542 KTILQKNTSKQIWESMKRKFQGNXXXXXXXXXXXXRDFEILEMKVGESVSDYFSRVMLVA 1363
            +TIL+K+T+K IW+SMK K+QG             ++FEIL MK GESV+DYF+R + VA
Sbjct: 61   ETILKKDTAKDIWDSMKTKYQGTARVKRAQLQALRKEFEILHMKEGESVNDYFARTLSVA 120

Query: 1362 NNMRNYGEDMPDVKVVEKILRSLTEQFNYIVCSIEESKDIDSLTVDELQSSLVVHEQKFR 1183
            N MR +GE + DV VVEKILRS+T +F+Y+VCSIEES DIDSL++D LQSSL+VHEQ+  
Sbjct: 121  NKMRIHGEKLEDVAVVEKILRSMTRKFDYVVCSIEESNDIDSLSIDVLQSSLLVHEQRMI 180

Query: 1182 KRDNEEHALKISLEE-KIATXXXXXXXXXXXXXXXXXXXXXRATVECYKCHKLGHFQYEC 1006
                +E ALKI+  E   +T                     +  VECY CHKLGH+QYEC
Sbjct: 181  CYVVDEQALKITTHEGTTSTGRGRGNFRGRGRGRGRHAQFDKTRVECYHCHKLGHYQYEC 240

Query: 1005 P 1003
            P
Sbjct: 241  P 241


>gb|AAG51247.1|AC055769_6 copia-type polyprotein, putative; 28768-32772 [Arabidopsis thaliana]
          Length = 1334

 Score =  369 bits (947), Expect(2) = e-169
 Identities = 180/341 (52%), Positives = 240/341 (70%), Gaps = 9/341 (2%)
 Frame = -3

Query: 998  ECPSWDKEANYAEFNETEELLLMSYLEINNAKTEEAWFLDSGCSNHMCGNKSIFSEFDDS 819
            ECPSW+KEANY E  E  +LLLM+++E    + ++ WFLDSGCSNHMCG +  F E D  
Sbjct: 263  ECPSWEKEANYVEMEE--DLLLMAHVEQIGDEEKQIWFLDSGCSNHMCGTREWFLELDSG 320

Query: 818  FRHVVRLGNNTKMNVHGRGSVKLRINGVIHVFTEVYYIPELKNNLLSLGQLQERGLAILI 639
            F+  VRLG++ +M V G+G ++L ++G I V ++VY++P LKNNL S+GQLQ++GL  +I
Sbjct: 321  FKQNVRLGDDRRMAVEGKGKLRLEVDGRIQVISDVYFVPGLKNNLFSVGQLQQKGLRFII 380

Query: 638  QSGMCQIYHP-HRGLIIQTNMTTNRMFVLFA------EAQNNSCFNTTTQDLAHLWHCRY 480
            +  +C+++H   + +++ + MT NRMFV+FA      E +   C     +   ++WH R+
Sbjct: 381  EGDVCEVWHKTEKRMVMHSTMTKNRMFVVFAAVKKSKETEETRCLQVIGK-ANNMWHKRF 439

Query: 479  AHLGYKGLKTLQSNEMVTGLPK--LPNSSIVCTDCMKGKQHRDPIPKKSQWRANQKLQLV 306
             HL ++GL++L   EMV GLPK  L     VC  C+KGKQ R+ IPK+S W++ Q LQLV
Sbjct: 440  GHLNHQGLRSLAEKEMVKGLPKFDLGEEEAVCDICLKGKQIRESIPKESAWKSTQVLQLV 499

Query: 305  HADICGPITPASNSKKRYILCFIDDFSRKAWIYFLLEKSEAFYYFKCFKMLVEKETGLPI 126
            H DICGPI PAS S KRYIL FIDDFSRK W Y L EKSE F +FK FK  VE+E+G  +
Sbjct: 500  HTDICGPINPASTSGKRYILNFIDDFSRKCWTYLLSEKSETFQFFKEFKAEVERESGKKL 559

Query: 125  KCLRTDRGGEFNSMEFNEFCKQNGI*RQLTTAYTPQQNGVA 3
             CLR+DRGGE+NS EF+E+CK+ GI RQLT AYTPQQNGVA
Sbjct: 560  VCLRSDRGGEYNSREFDEYCKEFGIKRQLTAAYTPQQNGVA 600



 Score =  258 bits (658), Expect(2) = e-169
 Identities = 134/257 (52%), Positives = 164/257 (63%), Gaps = 5/257 (1%)
 Frame = -2

Query: 1758 IPRFDGDYDHWSMLMENFLRSKEYWNLIETGYSEPGAGEILTATQXXXXXXXXXXXXXXK 1579
            IP+FDGDY+HW+MLMEN +RSKE+W++IETG   P    ILT  Q              K
Sbjct: 9    IPKFDGDYEHWAMLMENLIRSKEWWDIIETGIPRPERNVILTGAQRTELAEKTVKDHKVK 68

Query: 1578 NYLFQSIDKSILKTILQKNTSKQIWESMKRKFQGNXXXXXXXXXXXXRDFEILEMKVGES 1399
            NYLF SIDK+ILKTILQK TSK +WESMKRK+QGN            R FE+LEMK+GE+
Sbjct: 69   NYLFASIDKTILKTILQKETSKDLWESMKRKYQGNDRVQSAQLQRLRRSFEVLEMKIGET 128

Query: 1398 VSDYFSRVMLVANNMRNYGEDMPDVKVVEKILRSLTEQFNYIVCSIEESKDIDSLTVDEL 1219
            ++ YFSRVM + N+MRN GEDMPD KVVEKILR+L E+F Y+VC+IEES +I  LTVD L
Sbjct: 129  ITGYFSRVMEITNDMRNLGEDMPDSKVVEKILRTLVEKFTYVVCAIEESNNIKELTVDGL 188

Query: 1218 QSSLVVHEQKFRKRDNEEHALKISLEEKIATXXXXXXXXXXXXXXXXXXXXXRA-----T 1054
            QSSL+VHEQ   + D EE  LK   + +                        R      T
Sbjct: 189  QSSLMVHEQNLSRHDVEERVLKAETQWRPDGGRGRGGSPSRGRGRGGYQGRGRGYVNRDT 248

Query: 1053 VECYKCHKLGHFQYECP 1003
            VEC+KCHK+GH++ ECP
Sbjct: 249  VECFKCHKMGHYKAECP 265


>dbj|BAB11200.1| copia-type polyprotein [Arabidopsis thaliana]
            gi|13872710|emb|CAC37622.1| polyprotein [Arabidopsis
            thaliana]
          Length = 1334

 Score =  369 bits (947), Expect(2) = e-169
 Identities = 180/341 (52%), Positives = 240/341 (70%), Gaps = 9/341 (2%)
 Frame = -3

Query: 998  ECPSWDKEANYAEFNETEELLLMSYLEINNAKTEEAWFLDSGCSNHMCGNKSIFSEFDDS 819
            ECPSW+KEANY E  E  +LLLM+++E    + ++ WFLDSGCSNHMCG +  F E D  
Sbjct: 263  ECPSWEKEANYVEMEE--DLLLMAHVEQIGDEEKQIWFLDSGCSNHMCGTREWFLELDSG 320

Query: 818  FRHVVRLGNNTKMNVHGRGSVKLRINGVIHVFTEVYYIPELKNNLLSLGQLQERGLAILI 639
            F+  VRLG++ +M V G+G ++L ++G I V ++VY++P LKNNL S+GQLQ++GL  +I
Sbjct: 321  FKQNVRLGDDRRMAVEGKGKLRLEVDGRIQVISDVYFVPGLKNNLFSVGQLQQKGLRFII 380

Query: 638  QSGMCQIYHP-HRGLIIQTNMTTNRMFVLFA------EAQNNSCFNTTTQDLAHLWHCRY 480
            +  +C+++H   + +++ + MT NRMFV+FA      E +   C     +   ++WH R+
Sbjct: 381  EGDVCEVWHKTEKRMVMHSTMTKNRMFVVFAAVKKSKETEETRCLQVIGK-ANNMWHKRF 439

Query: 479  AHLGYKGLKTLQSNEMVTGLPK--LPNSSIVCTDCMKGKQHRDPIPKKSQWRANQKLQLV 306
             HL ++GL++L   EMV GLPK  L     VC  C+KGKQ R+ IPK+S W++ Q LQLV
Sbjct: 440  GHLNHQGLRSLAEKEMVKGLPKFDLGEEEAVCDICLKGKQIRESIPKESAWKSTQVLQLV 499

Query: 305  HADICGPITPASNSKKRYILCFIDDFSRKAWIYFLLEKSEAFYYFKCFKMLVEKETGLPI 126
            H DICGPI PAS S KRYIL FIDDFSRK W Y L EKSE F +FK FK  VE+E+G  +
Sbjct: 500  HTDICGPINPASTSGKRYILNFIDDFSRKCWTYLLSEKSETFQFFKEFKAEVERESGKKL 559

Query: 125  KCLRTDRGGEFNSMEFNEFCKQNGI*RQLTTAYTPQQNGVA 3
             CLR+DRGGE+NS EF+E+CK+ GI RQLT AYTPQQNGVA
Sbjct: 560  VCLRSDRGGEYNSREFDEYCKEFGIKRQLTAAYTPQQNGVA 600



 Score =  258 bits (658), Expect(2) = e-169
 Identities = 134/257 (52%), Positives = 164/257 (63%), Gaps = 5/257 (1%)
 Frame = -2

Query: 1758 IPRFDGDYDHWSMLMENFLRSKEYWNLIETGYSEPGAGEILTATQXXXXXXXXXXXXXXK 1579
            IP+FDGDY+HW+MLMEN +RSKE+W++IETG   P    ILT  Q              K
Sbjct: 9    IPKFDGDYEHWAMLMENLIRSKEWWDIIETGIPRPERNVILTGAQRTELAEKTVKDHKVK 68

Query: 1578 NYLFQSIDKSILKTILQKNTSKQIWESMKRKFQGNXXXXXXXXXXXXRDFEILEMKVGES 1399
            NYLF SIDK+ILKTILQK TSK +WESMKRK+QGN            R FE+LEMK+GE+
Sbjct: 69   NYLFASIDKTILKTILQKETSKDLWESMKRKYQGNDRVQSAQLQRLRRSFEVLEMKIGET 128

Query: 1398 VSDYFSRVMLVANNMRNYGEDMPDVKVVEKILRSLTEQFNYIVCSIEESKDIDSLTVDEL 1219
            ++ YFSRVM + N+MRN GEDMPD KVVEKILR+L E+F Y+VC+IEES +I  LTVD L
Sbjct: 129  ITGYFSRVMEITNDMRNLGEDMPDSKVVEKILRTLVEKFTYVVCAIEESNNIKELTVDGL 188

Query: 1218 QSSLVVHEQKFRKRDNEEHALKISLEEKIATXXXXXXXXXXXXXXXXXXXXXRA-----T 1054
            QSSL+VHEQ   + D EE  LK   + +                        R      T
Sbjct: 189  QSSLMVHEQNLSRHDVEERVLKAETQWRPDGGRGRGGSPSRGRGRGGYQGRGRGYVNRDT 248

Query: 1053 VECYKCHKLGHFQYECP 1003
            VEC+KCHK+GH++ ECP
Sbjct: 249  VECFKCHKMGHYKAECP 265


>emb|CAN75114.1| hypothetical protein VITISV_001420 [Vitis vinifera]
          Length = 1095

 Score =  391 bits (1005), Expect(2) = e-169
 Identities = 183/303 (60%), Positives = 228/303 (75%), Gaps = 2/303 (0%)
 Frame = -3

Query: 1004 QYECPSWDKEANYAEFNETEELLLMSYLEINNAKTEEAWFLDSGCSNHMCGNKSIFSEFD 825
            QY+CP+W+KEANYAE  E E++LLM+Y+E   AK  + WFLDSG SNHMCG+  +FSE D
Sbjct: 197  QYDCPTWNKEANYAELEEHEDVLLMAYVEEQEAKHNDVWFLDSGYSNHMCGDARMFSELD 256

Query: 824  DSFRHVVRLGNNTKMNVHGRGSVKLRINGVIHVFTEVYYIPELKNNLLSLGQLQERGLAI 645
            +SFR  V+LGNN+++ + GRG+V+L++NG  +V   V+Y+PELKNNLLS+GQLQE+GLAI
Sbjct: 257  ESFRQQVKLGNNSRITMKGRGNVRLQLNGFNYVLKAVFYVPELKNNLLSIGQLQEKGLAI 316

Query: 644  LIQSGMCQIYHPHRGLIIQTNMTTNRMFVLFAEAQNNS--CFNTTTQDLAHLWHCRYAHL 471
            +I  G+C+IYHP +GLIIQT M+TNRMF L    Q     CF  ++Q+L HLWH RY HL
Sbjct: 317  MIHDGLCKIYHPGKGLIIQTAMSTNRMFTLLTNKQEKKEVCFQASSQELYHLWHRRYGHL 376

Query: 470  GYKGLKTLQSNEMVTGLPKLPNSSIVCTDCMKGKQHRDPIPKKSQWRANQKLQLVHADIC 291
             +KGL  L +  MV GLP L  +++ CTDC+ GKQHRDPIPKK              +IC
Sbjct: 377  SHKGLNILXTKNMVRGLPHLLPTTLXCTDCLNGKQHRDPIPKK--------------NIC 422

Query: 290  GPITPASNSKKRYILCFIDDFSRKAWIYFLLEKSEAFYYFKCFKMLVEKETGLPIKCLRT 111
            GP+TP SN KKRY LCFIDDFSRK+W+YFL+EKSEA   FKCFK LVEKETG+ IKCLRT
Sbjct: 423  GPVTPTSNGKKRYALCFIDDFSRKSWVYFLVEKSEALNSFKCFKRLVEKETGMYIKCLRT 482

Query: 110  DRG 102
            DRG
Sbjct: 483  DRG 485



 Score =  234 bits (598), Expect(2) = e-169
 Identities = 116/192 (60%), Positives = 143/192 (74%)
 Frame = -2

Query: 1578 NYLFQSIDKSILKTILQKNTSKQIWESMKRKFQGNXXXXXXXXXXXXRDFEILEMKVGES 1399
            NYLFQ+ID++IL+TILQKNTSKQIW+SMK+K++GN            RDFE LEMK GE 
Sbjct: 10   NYLFQAIDRTILETILQKNTSKQIWDSMKKKYEGNARVKRSILQALRRDFETLEMKSGEC 69

Query: 1398 VSDYFSRVMLVANNMRNYGEDMPDVKVVEKILRSLTEQFNYIVCSIEESKDIDSLTVDEL 1219
            ++DYFSRVM V+N MR +GE M +V +VEKILRSLT+ FNYIVCSIEESKD D+LT+DEL
Sbjct: 70   ITDYFSRVMSVSNKMRFHGEQMREVTIVEKILRSLTDNFNYIVCSIEESKDTDTLTIDEL 129

Query: 1218 QSSLVVHEQKFRKRDNEEHALKISLEEKIATXXXXXXXXXXXXXXXXXXXXXRATVECYK 1039
            QSSL+VHEQKF K+  EE ALK++++E+I T                     RATVECY+
Sbjct: 130  QSSLIVHEQKFHKKPVEEQALKVTIDERIGTGGRGRNSYRGRGRGRGRQALNRATVECYR 189

Query: 1038 CHKLGHFQYECP 1003
            CH+LGHFQY+CP
Sbjct: 190  CHQLGHFQYDCP 201


>gb|KYP38784.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 560

 Score =  490 bits (1262), Expect = e-162
 Identities = 229/372 (61%), Positives = 288/372 (77%), Gaps = 2/372 (0%)
 Frame = -3

Query: 1127 HEEEVETTLGDEVEAEEDRASIEQQLNVISVTNLAIFSMSVQYECPSWDKEANYAEFNET 948
            HE++     G+E   +     I   +       L  F    Q ECP+W+KEANYAE  E 
Sbjct: 193  HEQKFTKHSGEEQALKVTHEGIRATVECYKCHQLGHF----QNECPTWNKEANYAEHEEE 248

Query: 947  EELLLMSYLEINNAKTEEAWFLDSGCSNHMCGNKSIFSEFDDSFRHVVRLGNNTKMNVHG 768
            EE+LLMSY+++N  + E+AWFLDSGCSNHMCG+K++F   ++ FR +V+LGNN+KM+V G
Sbjct: 249  EEMLLMSYMDVNETQREDAWFLDSGCSNHMCGDKALFYNLNEDFRQIVKLGNNSKMSVLG 308

Query: 767  RGSVKLRINGVIHVFTEVYYIPELKNNLLSLGQLQERGLAILIQSGMCQIYHPHRGLIIQ 588
            +G+V+L++NG  HV TEV+Y+PELKNNLLS+GQLQE+GL+ILIQ+G C+IYHP +GL+IQ
Sbjct: 309  KGNVRLKVNGFTHVVTEVFYVPELKNNLLSIGQLQEKGLSILIQNGSCKIYHPEKGLVIQ 368

Query: 587  TNMTTNRMFVLFAEA--QNNSCFNTTTQDLAHLWHCRYAHLGYKGLKTLQSNEMVTGLPK 414
            T MTTNRMFVL A    Q  +C +TT Q++AHLWHCRY HL +KGL+TLQ  +MV GLP 
Sbjct: 369  TEMTTNRMFVLTAVPMPQKPTCLHTTVQEIAHLWHCRYGHLSHKGLRTLQYKKMVHGLPP 428

Query: 413  LPNSSIVCTDCMKGKQHRDPIPKKSQWRANQKLQLVHADICGPITPASNSKKRYILCFID 234
            L + + VCT CM GKQHRDPIPKK+ WRA QKLQL+HADICGPI+P SNSKKRY++CFID
Sbjct: 429  LKSPTDVCTVCMIGKQHRDPIPKKANWRATQKLQLIHADICGPISPTSNSKKRYLICFID 488

Query: 233  DFSRKAWIYFLLEKSEAFYYFKCFKMLVEKETGLPIKCLRTDRGGEFNSMEFNEFCKQNG 54
            DF+ K WIYF++EKSEA   FK +K  VEKE+G  IKCLRTD+GGEF S+EFN+FCK+ G
Sbjct: 489  DFTMKTWIYFMVEKSEALVIFKHYKNYVEKESGCSIKCLRTDQGGEFVSLEFNDFCKEQG 548

Query: 53   I*RQLTTAYTPQ 18
            I RQLTTAYTPQ
Sbjct: 549  IKRQLTTAYTPQ 560



 Score =  296 bits (758), Expect = 3e-87
 Identities = 154/257 (59%), Positives = 177/257 (68%)
 Frame = -2

Query: 1773 FAQPSIPRFDGDYDHWSMLMENFLRSKEYWNLIETGYSEPGAGEILTATQXXXXXXXXXX 1594
            F QPSIPRFDG YDHW+MLMENFLRSKEYW+LIETGY EP  G   +  Q          
Sbjct: 2    FVQPSIPRFDGHYDHWAMLMENFLRSKEYWSLIETGYVEPEKGVEQSEAQRKRLEELKLK 61

Query: 1593 XXXXKNYLFQSIDKSILKTILQKNTSKQIWESMKRKFQGNXXXXXXXXXXXXRDFEILEM 1414
                KNYLFQ+I++ IL+TIL KNTSKQIWESMKRKF+GN            ++FE LEM
Sbjct: 62   DLKVKNYLFQAIERKILETILVKNTSKQIWESMKRKFEGNARVKRSHLQALRKEFETLEM 121

Query: 1413 KVGESVSDYFSRVMLVANNMRNYGEDMPDVKVVEKILRSLTEQFNYIVCSIEESKDIDSL 1234
            K GE V++YFSRV++VAN MR YGE M DV VVEKILRSL+E+FNY+VCSIEESKDID L
Sbjct: 122  KAGEGVTEYFSRVLIVANKMRTYGEQMQDVTVVEKILRSLSEKFNYVVCSIEESKDIDQL 181

Query: 1233 TVDELQSSLVVHEQKFRKRDNEEHALKISLEEKIATXXXXXXXXXXXXXXXXXXXXXRAT 1054
            ++DELQSSL+VHEQKF K   EE ALK++ E                          RAT
Sbjct: 182  SIDELQSSLMVHEQKFTKHSGEEQALKVTHE------------------------GIRAT 217

Query: 1053 VECYKCHKLGHFQYECP 1003
            VECYKCH+LGHFQ ECP
Sbjct: 218  VECYKCHQLGHFQNECP 234


>gb|KYP37051.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1079

 Score =  401 bits (1030), Expect(2) = e-161
 Identities = 198/343 (57%), Positives = 244/343 (71%), Gaps = 9/343 (2%)
 Frame = -3

Query: 1004 QYECPSWDKEANYAEFNET----EELLLMSYLEINNAKTEEAWFLDSGCSNHMCGNKSIF 837
            QYECP  +K A+Y  F E     +E+LL++Y E+ +    E WFLDSGCSNHM GNK  F
Sbjct: 234  QYECPGVEKRAHYTTFEEATEVEDEILLVAYEEVTHVVQMEDWFLDSGCSNHMTGNKLWF 293

Query: 836  SEFDDSFRH-VVRLGNNTKMNVHGRGSVKLRINGVIHVFTEVYYIPELKNNLLSLGQLQE 660
            +E  +   H  V+LGN+T + V  +G+++++IN + HV ++VYY+PELK NLLSLGQLQE
Sbjct: 294  TEIHEEGLHKTVKLGNDTTLEVAAKGNIRVQINNIAHVISDVYYVPELKTNLLSLGQLQE 353

Query: 659  RGLAILIQSGMCQIYHPHRGLIIQTNMTTNRMFVLFAEA--QNNSCFNTT--TQDLAHLW 492
            +GL ILIQ G C+I+HP RGLII T M  +RMF L A    Q++ CF     ++    LW
Sbjct: 354  KGLTILIQHGACKIFHPDRGLIIHTTMRGDRMFYLSASMFPQHSRCFQVEDISEKEMQLW 413

Query: 491  HCRYAHLGYKGLKTLQSNEMVTGLPKLPNSSIVCTDCMKGKQHRDPIPKKSQWRANQKLQ 312
            H R+ HL ++GL TL   +MV GLP L  S++VCT C+ GKQHRD IPK S WRA+ KLQ
Sbjct: 414  HRRFGHLNFRGLNTLAQEQMVIGLPSLKISTVVCTTCLVGKQHRDTIPKLSSWRASTKLQ 473

Query: 311  LVHADICGPITPASNSKKRYILCFIDDFSRKAWIYFLLEKSEAFYYFKCFKMLVEKETGL 132
            LVHA++CGPI+PASNS KRYIL F+DD+SRK W+YFL EKSE F  FK FK  VEKE G 
Sbjct: 474  LVHANVCGPISPASNSGKRYILSFVDDYSRKTWVYFLHEKSETFNTFKSFKACVEKEVGT 533

Query: 131  PIKCLRTDRGGEFNSMEFNEFCKQNGI*RQLTTAYTPQQNGVA 3
             I CLRTDRGGEF S EF+ FC   GI RQLT AYTPQQNGVA
Sbjct: 534  HIVCLRTDRGGEFTSKEFSNFCTHQGISRQLTAAYTPQQNGVA 576



 Score =  198 bits (504), Expect(2) = e-161
 Identities = 105/240 (43%), Positives = 141/240 (58%)
 Frame = -2

Query: 1722 MLMENFLRSKEYWNLIETGYSEPGAGEILTATQXXXXXXXXXXXXXXKNYLFQSIDKSIL 1543
            M MENFLRSKE W L+E G   P  G   T  Q              KN+LFQ+ID+ IL
Sbjct: 1    MTMENFLRSKELWQLVEDGI--PTLGATPTEAQRRSVAEAQLKDLKVKNFLFQAIDREIL 58

Query: 1542 KTILQKNTSKQIWESMKRKFQGNXXXXXXXXXXXXRDFEILEMKVGESVSDYFSRVMLVA 1363
            +T+L K+TS+ IW SM++K+QG+            R+FE+L MK GE V  Y  R + V 
Sbjct: 59   ETMLDKSTSQAIWRSMQQKYQGSMRVKRAQLQALRREFELLAMKDGEKVDSYLGRTLSVV 118

Query: 1362 NNMRNYGEDMPDVKVVEKILRSLTEQFNYIVCSIEESKDIDSLTVDELQSSLVVHEQKFR 1183
            N M++ GE M    VV KILRSLT +FNY+VCSIEES D+++L++DEL  SL+VHEQ+ +
Sbjct: 119  NKMKSNGEVMDSSTVVSKILRSLTTKFNYVVCSIEESNDLNTLSLDELHGSLLVHEQRMQ 178

Query: 1182 KRDNEEHALKISLEEKIATXXXXXXXXXXXXXXXXXXXXXRATVECYKCHKLGHFQYECP 1003
                EE  LK++ +++                        +A +EC++CHKLGHFQYECP
Sbjct: 179  SSQPEEQVLKVTHDDREGAGRGRGRGNRGRGRGRGRQPFNKALIECFQCHKLGHFQYECP 238


>gb|KYP40819.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 582

 Score =  354 bits (908), Expect(2) = e-154
 Identities = 170/321 (52%), Positives = 219/321 (68%), Gaps = 3/321 (0%)
 Frame = -3

Query: 1004 QYECPSWDKEA-NYAEFNETEELLLMSYLEINNAKTEEAWFLDSGCSNHMCGNKSIFSEF 828
            QYECP+   +  NY  F+E EE+LLM+ LE +    +E WFLDSGCS HMCG K  F + 
Sbjct: 253  QYECPNLATDVVNYTGFDEEEEMLLMA-LEGSKENDQECWFLDSGCSTHMCGVKRWFIDL 311

Query: 827  DDSFRHVVRLGNNTKMNVHGRGSVKLRINGVIHVFTEVYYIPELKNNLLSLGQLQERGLA 648
            D+ FR VV+LG+   ++V GRG+VKL + G I + T VYYIP L NNLLS+GQLQ++ L 
Sbjct: 312  DEQFREVVKLGDGRTLSVMGRGNVKLCVEGRIQIITGVYYIPNLMNNLLSIGQLQQKKLK 371

Query: 647  ILIQSGMCQIYHPHRGLIIQTNMTTNRMFVLFAEA--QNNSCFNTTTQDLAHLWHCRYAH 474
            I+     C++YH  +GL++ + M  NRMF + A+      +C  T+  D   +WH RY H
Sbjct: 372  IIFDDDKCRVYHKEKGLLMTSYMANNRMFPIKAKPVITEAACIQTSNVDSTEMWHKRYGH 431

Query: 473  LGYKGLKTLQSNEMVTGLPKLPNSSIVCTDCMKGKQHRDPIPKKSQWRANQKLQLVHADI 294
            L Y GLK L    MV GLP+L     VC +C  GKQHRD I K+S WRA ++L+L+H+DI
Sbjct: 432  LSYGGLKLLNQKAMVKGLPELKEMDKVCPECAVGKQHRDAISKQSTWRATRRLELIHSDI 491

Query: 293  CGPITPASNSKKRYILCFIDDFSRKAWIYFLLEKSEAFYYFKCFKMLVEKETGLPIKCLR 114
            CGP TP SNS +RY + FIDDFSRK W++FL EK+EAF  FK F+++VEKE+   I CLR
Sbjct: 492  CGPSTPTSNSNRRYFITFIDDFSRKTWVFFLCEKAEAFETFKRFRLMVEKESNCVISCLR 551

Query: 113  TDRGGEFNSMEFNEFCKQNGI 51
            TDRGGEFNS +FNEFC  NGI
Sbjct: 552  TDRGGEFNSNDFNEFCTMNGI 572



 Score =  220 bits (561), Expect(2) = e-154
 Identities = 110/265 (41%), Positives = 160/265 (60%)
 Frame = -2

Query: 1797 MAAEGNTGFAQPSIPRFDGDYDHWSMLMENFLRSKEYWNLIETGYSEPGAGEILTATQXX 1618
            MA      + QP+IPRFDG YDHW+MLMEN LRSK YW+++E G   P      T  Q  
Sbjct: 1    MADSERDNYVQPAIPRFDGHYDHWAMLMENLLRSKNYWDVVENGI--PALASTATQEQKK 58

Query: 1617 XXXXXXXXXXXXKNYLFQSIDKSILKTILQKNTSKQIWESMKRKFQGNXXXXXXXXXXXX 1438
                        KNYLFQ+I++SI++TIL  +TSK IW+S+K+K+QG+            
Sbjct: 59   IYDETKIRDLKAKNYLFQAIERSIIETILCVDTSKDIWDSLKQKYQGSTKVKRAQLQSLR 118

Query: 1437 RDFEILEMKVGESVSDYFSRVMLVANNMRNYGEDMPDVKVVEKILRSLTEQFNYIVCSIE 1258
             +FE ++MK  E+V++YF+R++ + N M+ +GE +    VVEKI+RS++ +FNY++CSIE
Sbjct: 119  GEFEAIKMKTEENVNEYFARILSIVNKMKFHGEKVTQTTVVEKIMRSMSTKFNYVICSIE 178

Query: 1257 ESKDIDSLTVDELQSSLVVHEQKFRKRDNEEHALKISLEEKIATXXXXXXXXXXXXXXXX 1078
            ++ DI+ LT+D LQSSL+V E + + + ++E ALK++                       
Sbjct: 179  QANDIEELTIDGLQSSLLVEESRMKIQCDDEQALKVT------GGTFKGRGRGRFGGRGR 232

Query: 1077 XXXXXRATVECYKCHKLGHFQYECP 1003
                 R  +ECYKCHK GH+QYECP
Sbjct: 233  GRQASREHIECYKCHKFGHYQYECP 257


>gb|KYP74877.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1232

 Score =  419 bits (1076), Expect(2) = e-151
 Identities = 203/338 (60%), Positives = 247/338 (73%), Gaps = 4/338 (1%)
 Frame = -3

Query: 1004 QYECPSWDKEANYAEFNETEE----LLLMSYLEINNAKTEEAWFLDSGCSNHMCGNKSIF 837
            QYECP W+K+A+YAE  + EE    LLLM+ +E    K  E WFLDSGCSNHM  NK  F
Sbjct: 162  QYECPLWEKKAHYAETEDKEEQEDELLLMALVECKEGKKGE-WFLDSGCSNHMSSNKEWF 220

Query: 836  SEFDDSFRHVVRLGNNTKMNVHGRGSVKLRINGVIHVFTEVYYIPELKNNLLSLGQLQER 657
            SE D++FRH V+LGN+T + V G+GSV++ +NG+IHV T VYY+PELKNNLLS+ QLQE+
Sbjct: 221  SELDENFRHKVKLGNDTCIAVMGKGSVRMLVNGIIHVITHVYYVPELKNNLLSIWQLQEK 280

Query: 656  GLAILIQSGMCQIYHPHRGLIIQTNMTTNRMFVLFAEAQNNSCFNTTTQDLAHLWHCRYA 477
            GL+I IQ+  C + H  RGLI++  M+ NRMFVL A  +  +CF    +D + LWH R  
Sbjct: 281  GLSITIQNKKCNVVHSERGLIMEVRMSANRMFVLTATMRVETCFQAYAEDNSQLWHNRLG 340

Query: 476  HLGYKGLKTLQSNEMVTGLPKLPNSSIVCTDCMKGKQHRDPIPKKSQWRANQKLQLVHAD 297
            HL Y GLKTL S +MVTGL  +     +CT C+ GKQHR+ +PKKS WRA+++LQL+HAD
Sbjct: 341  HLSYDGLKTLVSKQMVTGLSAIITPQEICTHCLAGKQHRNTMPKKSLWRASKRLQLIHAD 400

Query: 296  ICGPITPASNSKKRYILCFIDDFSRKAWIYFLLEKSEAFYYFKCFKMLVEKETGLPIKCL 117
            +CGPI P SNS K+YIL FIDD SRK W+YFL EKSE F  FK FK LVEKE G  I CL
Sbjct: 401  LCGPIQPTSNSNKKYILSFIDDLSRKTWVYFLSEKSETFSLFKGFKALVEKEAGESIICL 460

Query: 116  RTDRGGEFNSMEFNEFCKQNGI*RQLTTAYTPQQNGVA 3
            RTDRGGEF+S  F EFC+  GI RQLT AYTPQQNGVA
Sbjct: 461  RTDRGGEFSSKAFEEFCRSQGIKRQLTAAYTPQQNGVA 498



 Score =  145 bits (367), Expect(2) = e-151
 Identities = 74/167 (44%), Positives = 104/167 (62%), Gaps = 1/167 (0%)
 Frame = -2

Query: 1497 MKRKFQGNXXXXXXXXXXXXRDFEILEMKVGESVSDYFSRVMLVANNMRNYGEDMPDVKV 1318
            MK+KFQG+            ++FE+L+MK GESV+ YF+R + +A +M+  GE M +  +
Sbjct: 1    MKQKFQGSTRVKRAQLQALRKEFEMLQMKEGESVNSYFARTLKIAKSMKAIGESMQESVI 60

Query: 1317 VEKILRSLTEQFNYIVCSIEESKDIDSLTVDELQSSLVVHEQKFRKRDNEEHALKISLEE 1138
              KILRS+T QFNY+VCSIEES ++D++T+DELQSSL+VHEQ+      EE  ++  ++E
Sbjct: 61   TAKILRSMTTQFNYVVCSIEESNNLDTMTIDELQSSLLVHEQRMTFSTAEEQVMQTVVDE 120

Query: 1137 KIAT-XXXXXXXXXXXXXXXXXXXXXRATVECYKCHKLGHFQYECPV 1000
            K                         +A VEC+KCHKLGHFQYECP+
Sbjct: 121  KGGRGRGRGRGRGSFRGRGRGRQLFNKAEVECFKCHKLGHFQYECPL 167


>emb|CAN74984.1| hypothetical protein VITISV_035210 [Vitis vinifera]
          Length = 2408

 Score =  404 bits (1038), Expect(2) = e-147
 Identities = 197/336 (58%), Positives = 238/336 (70%), Gaps = 2/336 (0%)
 Frame = -3

Query: 1004 QYECPSWDKEANYAEFNETEELLLMSYLEINNAKTEEAWFLDSGCSNHMCGNKSIFSEFD 825
            QYECP W+KEANYAE  E EE+LLMSY+E+N ++ E+ WFLDSGCSNHMC NK  F + D
Sbjct: 199  QYECPKWEKEANYAELEEKEEMLLMSYVELNQSRREDVWFLDSGCSNHMCANKEWFLDLD 258

Query: 824  DSFRHVVRLGNNTKMNVHGRGSVKLRINGVIHVFTEVYYIPELKNNLLSLGQLQERGLAI 645
            + FR  V+LGNN+KM V G+ +++L+I GV  V T+V+YIPELKNNLLS+GQLQERG+AI
Sbjct: 259  EEFRQSVKLGNNSKMAVLGKDNIRLQIAGVTQVITDVFYIPELKNNLLSVGQLQERGVAI 318

Query: 644  LIQSGMCQIYHPHRGLIIQTNMTTNRMFVLFAE--AQNNSCFNTTTQDLAHLWHCRYAHL 471
            LIQ G+C++YHP +GLI+QT M+T RMF+L A   ++  +CF T  +D  HLWHCRY HL
Sbjct: 319  LIQHGVCRVYHPKKGLIMQTAMSTKRMFILSARILSKAPTCFQTILEDNTHLWHCRYGHL 378

Query: 470  GYKGLKTLQSNEMVTGLPKLPNSSIVCTDCMKGKQHRDPIPKKSQWRANQKLQLVHADIC 291
             +KGL+TLQ  +MV GLP+L   S +CTDCM GKQHRD IPK+S WRA+Q+LQLVHADIC
Sbjct: 379  SFKGLRTLQYKQMVRGLPQLKAPSKICTDCMVGKQHRDAIPKRSLWRASQRLQLVHADIC 438

Query: 290  GPITPASNSKKRYILCFIDDFSRKAWIYFLLEKSEAFYYFKCFKMLVEKETGLPIKCLRT 111
            GPI P SNSKKRY + FIDD+S                                      
Sbjct: 439  GPIKPISNSKKRYFISFIDDYSH------------------------------------- 461

Query: 110  DRGGEFNSMEFNEFCKQNGI*RQLTTAYTPQQNGVA 3
             RGGEF S EFN FCK NGI RQLT AYTPQQNGVA
Sbjct: 462  -RGGEFISHEFNVFCKANGISRQLTAAYTPQQNGVA 496



 Score =  148 bits (373), Expect(2) = e-147
 Identities = 90/267 (33%), Positives = 123/267 (46%), Gaps = 2/267 (0%)
 Frame = -2

Query: 1797 MAAEGNTGFAQPSIPRFDGDYDHWSMLMENFLRSKEYWNLIETGYSEPGAGEILTATQXX 1618
            MAAE N  F QP+IP+FDG YDHWSMLMENFLRSKEYW+L+E G      G   T  Q  
Sbjct: 1    MAAENN--FVQPAIPKFDGHYDHWSMLMENFLRSKEYWSLVEIGIPAAAEGVEFTEAQ-- 56

Query: 1617 XXXXXXXXXXXXKNYLFQSIDKSILKTILQKNTSKQIWESMKRKFQGNXXXXXXXXXXXX 1438
                                              K I +   +  +G+            
Sbjct: 57   ---------------------------------QKSIADQKLKDLKGSTRVKRAQLQALR 83

Query: 1437 RDFEILEMKVGESVSDYFSRVMLVANNMRNYGEDMPDVKVVEKILRSLTEQFNYIVCSIE 1258
            ++FE+L+MK GESV  YF+R +++AN M+ +GE+M  V ++EKILRS+T +F+Y+     
Sbjct: 84   KEFEVLQMKEGESVDAYFARTLIIANKMKIHGENMQQVVIIEKILRSMTSRFDYV----- 138

Query: 1257 ESKDIDSLTVDELQSSLVVHEQKFRKRDNEEHALKISLEEKIA--TXXXXXXXXXXXXXX 1084
                                  +      +E ALK+  +++I                  
Sbjct: 139  ----------------------RMNGHGGDEQALKVIYDDRIGGRGGGRARGAFRGRGRG 176

Query: 1083 XXXXXXXRATVECYKCHKLGHFQYECP 1003
                   +A VECYKCH+LGHFQYECP
Sbjct: 177  RGRQTFNKAIVECYKCHQLGHFQYECP 203



 Score =  117 bits (293), Expect = 3e-23
 Identities = 88/311 (28%), Positives = 132/311 (42%), Gaps = 13/311 (4%)
 Frame = -3

Query: 896  EAWFLDSGCSNHMCGNKSIFSEFDDSFRHV-VRLGNNTKMNVHGRGSVK---LRINGVIH 729
            + W  DS C NHM  + S+FS+ D +   + + + + + M+ +  G V    L + GV H
Sbjct: 1462 QTWLFDSACXNHMTPHSSLFSKLDPAPHPLNIHIADGSTMHGNSLGFVSTSNLSVPGVFH 1521

Query: 728  VFTEVYYIPELKNNLLSLGQLQERGLAILIQSGMCQIYHPHRGLIIQTNMTTNRMF---- 561
            V       P+L  NL S+GQL E G  ++     C +  P  G  + T      MF    
Sbjct: 1522 V-------PDLSYNLCSVGQLAELGYRLIFXYSGCIVQDPRTGXELGTGPRVGXMFPVSN 1574

Query: 560  -----VLFAEAQNNSCFNTTTQDLAHLWHCRYAHLGYKGLKTLQSNEMVTGLPKLPNSSI 396
                 V        +   ++   LA L H R  H     ++ L S  ++    K      
Sbjct: 1575 LHLPPVAPVSIATAAAAVSSLPSLA-LXHSRLGHXSSSRVQQLVSRGLLGSXSK---DIF 1630

Query: 395  VCTDCMKGKQHRDPIPKKSQWRANQKLQLVHADICGPITPASNSKKRYILCFIDDFSRKA 216
             CT C   KQ   P     +  +N   +L+H+D+ GP   AS    RY + FIDD+SR +
Sbjct: 1631 XCTSCXLXKQPALPF-NNXESISNSIFELIHSDVWGPSPVASIGXSRYFVVFIDDYSRYS 1689

Query: 215  WIYFLLEKSEAFYYFKCFKMLVEKETGLPIKCLRTDRGGEFNSMEFNEFCKQNGI*RQLT 36
            WI+ +  +SE    +  F  ++E +    IK  R+D   E+    F       G    LT
Sbjct: 1690 WIFPMKSRSEILSIYSNFAKMIETQFSKRIKTFRSDNALEYTQHAFQALLHSYGTVHHLT 1749

Query: 35   TAYTPQQNGVA 3
               T QQNG A
Sbjct: 1750 CPGTSQQNGRA 1760


>gb|KYP50277.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 442

 Score =  294 bits (753), Expect(2) = e-146
 Identities = 152/266 (57%), Positives = 185/266 (69%), Gaps = 1/266 (0%)
 Frame = -2

Query: 1797 MAAEGNTGFAQPSIPRFDGDYDHWSMLMENFLRSKEYWNLIETGYSEPGAGEILTATQXX 1618
            MA   ++ F QP+IPRFDG YDHWSMLMENFLRSKEYW+L+ETG+ +   G   +  Q  
Sbjct: 1    MANANDSSFVQPAIPRFDGHYDHWSMLMENFLRSKEYWSLVETGFEDSEKGSAASEDQKR 60

Query: 1617 XXXXXXXXXXXXKNYLFQSIDKSILKTILQKNTSKQIWESMKRKFQGNXXXXXXXXXXXX 1438
                        KNYLFQ+ID++IL+TILQKNTSK+IW+SMKRK++GN            
Sbjct: 61   KRDEMKLKDLQVKNYLFQAIDRTILETILQKNTSKEIWDSMKRKYEGNARVKRSILQGLR 120

Query: 1437 RDFEILEMKVGESVSDYFSRVMLVANNMRNYGEDMPDVKVVEKILRSLTEQFNYIV-CSI 1261
            ++FEILEMK GES++DYFSRVM VA+ MR YGE M DV +VEKILRSLTE+FNYIV CSI
Sbjct: 121  KEFEILEMKSGESITDYFSRVMSVASKMRTYGEQMQDVIIVEKILRSLTEKFNYIVFCSI 180

Query: 1260 EESKDIDSLTVDELQSSLVVHEQKFRKRDNEEHALKISLEEKIATXXXXXXXXXXXXXXX 1081
            EESKDIDSL++DELQSSL+VHEQKF K+  EE ALK+S E+                   
Sbjct: 181  EESKDIDSLSIDELQSSLIVHEQKFHKKHEEEQALKVSSEDN---------GGRGRGSYR 231

Query: 1080 XXXXXXRATVECYKCHKLGHFQYECP 1003
                  RAT+EC+KCHKL H++ ECP
Sbjct: 232  GRGRQNRATIECFKCHKLEHYKNECP 257



 Score =  256 bits (653), Expect(2) = e-146
 Identities = 114/184 (61%), Positives = 150/184 (81%), Gaps = 2/184 (1%)
 Frame = -3

Query: 998 ECPSWDKEANYAEFNETEELLLMSYLEINNAKTEEAWFLDSGCSNHMCGNKSIFSEFDDS 819
           ECP WDKEA+YA FNE EELLLM+  +++  +T  AWFLDSGCSNHMCGN++ F E DD+
Sbjct: 255 ECPDWDKEAHYAAFNEEEELLLMADEDLHGVQTTNAWFLDSGCSNHMCGNRAWFKEVDDT 314

Query: 818 FRHVVRLGNNTKMNVHGRGSVKLRINGVIHVFTEVYYIPELKNNLLSLGQLQERGLAILI 639
           F+  V+LGNNT+M V G+GSV+L I GV H+ T+V+ +PELKNNLLS+GQLQE+GL ++ 
Sbjct: 315 FKQHVKLGNNTRMEVTGKGSVRLNIKGVTHIITDVFLVPELKNNLLSIGQLQEKGLTVMF 374

Query: 638 QSGMCQIYHPHRGLIIQTNMTTNRMFVLFAEA--QNNSCFNTTTQDLAHLWHCRYAHLGY 465
           QSG C++YHP +GLI++TNMTTNRMF+LFA++  + +SCF+ +TQDL+ LWH RYAHL +
Sbjct: 375 QSGTCKLYHPDKGLILETNMTTNRMFILFAQSATKKDSCFHISTQDLSSLWHRRYAHLSH 434

Query: 464 KGLK 453
           K  K
Sbjct: 435 KRTK 438


>gb|KYP43087.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 551

 Score =  434 bits (1117), Expect = e-140
 Identities = 202/289 (69%), Positives = 245/289 (84%), Gaps = 3/289 (1%)
 Frame = -3

Query: 860 MCGNKSIFSEFDDSFRHVVRLGNNTKMNVHGRGSVKLRINGVIHVFTEVYYIPELKNNLL 681
           MCGN++ F E DD+F+  V+LGNNT+M V G+GSV+L I GV H+ T+V+ +PELKNNLL
Sbjct: 1   MCGNRAWFKEVDDTFKQHVKLGNNTRMEVTGKGSVRLNIKGVTHIITDVFLVPELKNNLL 60

Query: 680 SLGQLQERGLAILIQSGMCQIYHPHRGLIIQTNMTTNRMFVLFAEA--QNNSCFNTTTQD 507
           S+GQLQE+GL ++ QSG C++YHP +GLI++TNMTTNRMF+LFA++  + +SCF+ +TQD
Sbjct: 61  SIGQLQEKGLTVMFQSGTCKLYHPDKGLILETNMTTNRMFILFAQSATKKDSCFHISTQD 120

Query: 506 LAHLWHCRYAHLGYKGLKTLQSNEMVTGLPK-LPNSSIVCTDCMKGKQHRDPIPKKSQWR 330
           L+ LWH RYAHL +KGL+ LQS  MV GLP  L  +  VC DCMKGKQHRDPIPKKSQWR
Sbjct: 121 LSSLWHRRYAHLSHKGLRILQSKGMVRGLPSSLSTTEKVCEDCMKGKQHRDPIPKKSQWR 180

Query: 329 ANQKLQLVHADICGPITPASNSKKRYILCFIDDFSRKAWIYFLLEKSEAFYYFKCFKMLV 150
           A QKL+L+HADICGPI P+SNS+KRY LCFIDD++RKAWIYFL EKSEAF+YF+CFK LV
Sbjct: 181 AKQKLELIHADICGPIIPSSNSQKRYFLCFIDDYTRKAWIYFLTEKSEAFHYFQCFKNLV 240

Query: 149 EKETGLPIKCLRTDRGGEFNSMEFNEFCKQNGI*RQLTTAYTPQQNGVA 3
           EKE+GL IKCLRTDRGGEF S EFNEFC++ GI RQLTTAYTPQQNGVA
Sbjct: 241 EKESGLMIKCLRTDRGGEFTSSEFNEFCQKTGIKRQLTTAYTPQQNGVA 289