BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia27_contig00005887
         (4634 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CDP09717.1| unnamed protein product [Coffea canephora]            345   e-100
emb|CDP14470.1| unnamed protein product [Coffea canephora]            330   2e-94
ref|XP_008234850.1| PREDICTED: putative ribonuclease H protein A...   272   6e-72
ref|XP_008355389.1| PREDICTED: putative ribonuclease H protein A...   265   3e-70
ref|XP_008372934.1| PREDICTED: putative ribonuclease H protein A...   265   8e-70
ref|XP_008367240.1| PREDICTED: putative ribonuclease H protein A...   261   1e-69
ref|XP_008351830.1| PREDICTED: putative ribonuclease H protein A...   258   9e-67
ref|XP_012067550.1| PREDICTED: uncharacterized protein LOC105630...   258   2e-66
ref|XP_012079594.1| PREDICTED: uncharacterized protein LOC105640...   258   2e-66
ref|XP_008367994.1| PREDICTED: uncharacterized protein LOC103431...   256   2e-65
ref|XP_009113843.1| PREDICTED: putative ribonuclease H protein A...   251   2e-65
ref|XP_009140270.1| PREDICTED: putative ribonuclease H protein A...   249   4e-65
ref|XP_008391838.1| PREDICTED: uncharacterized protein LOC103454...   253   1e-64
ref|XP_009149305.1| PREDICTED: putative ribonuclease H protein A...   248   2e-64
ref|XP_008231382.1| PREDICTED: putative ribonuclease H protein A...   240   6e-64
emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga...   250   8e-64
ref|XP_009114067.1| PREDICTED: putative ribonuclease H protein A...   236   1e-63
ref|XP_008391252.1| PREDICTED: putative ribonuclease H protein A...   239   2e-63
ref|XP_009108245.1| PREDICTED: putative ribonuclease H protein A...   233   4e-63
ref|XP_008340321.1| PREDICTED: putative ribonuclease H protein A...   236   5e-63

>emb|CDP09717.1| unnamed protein product [Coffea canephora]
          Length = 613

 Score =  345 bits (885), Expect = e-100
 Identities = 197/603 (32%), Positives = 305/603 (50%), Gaps = 37/603 (6%)
 Frame = +1

Query: 2737 FKFISSTVQARLRSWKNQFLSPAG----------------------------DICRFSSK 2832
            F +I  ++  R+ SWKN+ LS  G                            ++    + 
Sbjct: 19   FGYIKDSISRRMNSWKNKLLSQGGKEVLLKSVSMAMPVYTMSCFKLPNKLCKEVTSIFAN 78

Query: 2833 FWWGSQIDGPNKIHWASWDKMAVAKDRGGLGFKDIQKFNDALLAKQLWRILTQPNLLMSQ 3012
            +WWG   +G NK+HW SW ++A  K  GGLGF+++Q FN ALLAKQ+WR++++PNLL+S+
Sbjct: 79   YWWGES-EGRNKMHWCSWGRLARDKKEGGLGFRELQNFNKALLAKQVWRVISKPNLLVSK 137

Query: 3013 VMKGKYFHNRKLVEVEGKGTDSWLWKCWLLARDTLALGVRYQIGDGKSVNIWESPWIPNK 3192
            V++ KYFH   + + +     SW+W+  +  RD +  G R +IG+GK+ NIWE  WIP  
Sbjct: 138  VLRAKYFHKESIFKCKIPKCASWIWQSLMNVRDFVRKGTRRKIGNGKATNIWEDNWIPGN 197

Query: 3193 QGFKLHNSHVEGSNVRWVRELMSVDGKGWNSELVRKLFGGTDAESILKIPISQTGRKDRL 3372
            +  K+     +  N+R V EL+S  G  W   LV ++F   DA+ IL IPIS  GR+D  
Sbjct: 198  KDGKVTTVMPQSCNIRRVEELIS--GFRWRIPLVSRIFNRKDAKEILDIPISIAGREDSN 255

Query: 3373 VWHLEAKGQYSVKSAYNAALSCC-----KKEAEAPESSENRKKSDIMWSRTWKMHVKGKI 3537
             W     G Y+V S Y A          +++ EA  SS N   ++  W   WK+ VK KI
Sbjct: 256  YWLHSGSGTYTVNSGYKALCQETSQHKGRRDNEAGTSSAN--SNEKQWKWLWKLKVKSKI 313

Query: 3538 KHFLWRSCHHHLATKDQLRLKGISLDPMCCFCGEEEEDLEHIFFNCERAKIIWKLSPVNW 3717
            KHF+WRS +  L   D +  +    DP+C  CGE+EE +EH+FF C RA+ +WK++P+ W
Sbjct: 314  KHFIWRSLNGLLPVNDLVFKRIHQGDPICDGCGEQEESIEHLFFQCSRAQEVWKMAPIQW 373

Query: 3718 EGLRDFTDSFPKWWMQVCQISRGGCVVDRIQLTTYLLWWLWKSRNSWMFXXXXXXXXXXX 3897
            +GL + T +   WW  + + +      + ++LT  +LW +WK RN W F           
Sbjct: 374  DGLTEQTRNILVWWNSMLEATNRIEGREHVELTVNILWQIWKRRNEWKFNAKRRHPWESI 433

Query: 3898 XLAFEEWKEFDSAKLIPAAQAGLLNPVMPETESRWVSK---GADYFHIAVGA-VLSKTGR 4065
              A +EW+E  S     A +     PV  E +         G D   I +   V  +T R
Sbjct: 434  KKALQEWQEQAS-----AWREEKSTPVEAERDRETAETDEGGRDEMQIRLSTHVQEQTNR 488

Query: 4066 VGLGGLVSCEDKVFHCAWSSSRDLATNLVDATLMAVREALIKAAQKNWQKVVVCVDDKSL 4245
            VG G + +  +     AW+ +   A + +  +  AV+ A+IKA Q  WQK+ V +    L
Sbjct: 489  VGTGIIATNFNHQLVSAWALTDRYAGSHLQTSAEAVKMAIIKARQLQWQKITVHLLSPQL 548

Query: 4246 VCDLRKMNAADVKCSIIVEDIFHLANRLEFCCFEAMDYLCKMSCNRLAIHAIEGEASQEW 4425
            +  +    A D+K + + +DI  L    + C F  +D      C  ++ +A+     +EW
Sbjct: 549  LKMITNGLAKDIKMATLTDDINSLRALFQKCSF-CLDRNLDSRCEWISDYALGISQDEEW 607

Query: 4426 LHP 4434
            ++P
Sbjct: 608  INP 610


>emb|CDP14470.1| unnamed protein product [Coffea canephora]
          Length = 660

 Score =  330 bits (845), Expect = 2e-94
 Identities = 190/641 (29%), Positives = 307/641 (47%), Gaps = 38/641 (5%)
 Frame = +1

Query: 2617 KNTPAGSRAQICTTLQGITEHISSKYLGLPMGIGRSKVDTFKFISSTVQARLRSWKNQFL 2796
            KN P   R  +C+ L G+TE    KYLGLPM I R+K   F FI   ++ ++  W+N+ L
Sbjct: 21   KNMPMEQRQDVCSALGGMTEMTQGKYLGLPMVISRTKEQIFGFIKENIKRKMHDWRNKLL 80

Query: 2797 SPAG----------------------------DICRFSSKFWWGSQIDGPNKIHWASWDK 2892
            S AG                            DI    + +WWG + +G NK+HW SW K
Sbjct: 81   STAGKEVMLKAVSMAMPTYAMSVFKLPRKLCKDISALMANYWWG-EANGKNKLHWLSWRK 139

Query: 2893 MAVAKDRGGLGFKDIQKFNDALLAKQLWRILTQPNLLMSQVMKGKYFHNRKLVEVEGKGT 3072
            M+++++ GGLGFKDI+ +N ALL KQ+WRILT+PNLL+S+V++ +YF    ++    K  
Sbjct: 140  MSLSRNAGGLGFKDIEAYNKALLGKQVWRILTKPNLLISKVLRARYFPKDSILTCRPKQN 199

Query: 3073 DSWLWKCWLLARDTLALGVRYQIGDGKSVNIWESPWIPNKQGFKLHNSHVEGSNVRWVRE 3252
             SW+W+  L AR  +  GV  +IG+G+S +IW   WIP     +  +   +  N++ V E
Sbjct: 200  ASWIWQGLLGARRVVEKGVIRRIGNGRSTSIWGHRWIPGSSSGRPTSLGPQSYNLKMVNE 259

Query: 3253 LMSVDGKGWNSELVRKLFGGTDAESILKIPISQTGRKDRLVWHLEAKGQYSVKSAYNAAL 3432
            L+S     W    + + F  +DAE IL IP+S  GR+D   W     G Y+V S Y   +
Sbjct: 260  LIS--HHRWKRNTIFQHFNQSDAEKILNIPLSLMGREDNYYWQHNPGGIYTVSSGYKCIM 317

Query: 3433 ------SCCKKEAEAPESSENRKKSDIMWSRTWKMHVKGKIKHFLWRSCHHHLATKDQLR 3594
                       E   P  +   ++S  MW+  WK+++K K+K F+W+     L  +  + 
Sbjct: 318  KERTNVKQIAPEEAGPSITGEDQQSRQMWTTLWKLNIKHKVKIFIWKCITGALPVRAAIF 377

Query: 3595 LKGISLDPMCCFCGEEEEDLEHIFFNCERAKIIWKLSPVNWEGLRDFTDSFPKWWMQVCQ 3774
             K    DP+C  CGE++E +EH+  NC+ ++ +WK +P+ W+G  D    F +WW+++ +
Sbjct: 378  RKTRMGDPVCRLCGEDQETVEHLMLNCQHSQQVWKAAPIQWDGAMDQKGDFRRWWIRISE 437

Query: 3775 ISRGGCVVDRIQLTTYLLWWLWKSRNSWMF-XXXXXXXXXXXXLAFEEW---KEFDSAKL 3942
                   ++ I LT  +LW LWK RNS  F              A +EW   +EF   K 
Sbjct: 438  ARTRQGGMEHIGLTAIILWQLWKERNSKEFENKTSCSPARTIGKAQKEWLEQEEFTKGKT 497

Query: 3943 IPAAQAGLLNPVMPETESRWVSKGADYFHIAVGAVLSKTGRVGLGGLVSCEDKVFHCAWS 4122
              + +    N    E       +G     +A+ +   +T  +G+G   +    +    W+
Sbjct: 498  RLSIRETTCN--KEEQHQGCNEEGTIKLEMAITSQNGQTS-LGIGVTATKHPSLRLAEWA 554

Query: 4123 SSRDLATNLVDATLMAVREALIKAAQKNWQKVVVCVDDKSLVCDLRKMNAADVKCSIIVE 4302
                   + V    MAV   L KA +  W ++ +    + L+  ++  + ++ + + ++E
Sbjct: 555  LKERSKGDKVIDEAMAVHLVLCKAFEHQWSRITIQFQSQDLMRQIKYNSPSNSRLATLIE 614

Query: 4303 DIFHLANRLEFCCFEAMDYLCKMSCNRLAIHAIEGEASQEW 4425
            DI  +      C F   +         L+ HA      +EW
Sbjct: 615  DILSMQKLFRLCLFSLANENSIKRSRDLSSHAFGILVDEEW 655


>ref|XP_008234850.1| PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
          Length = 1009

 Score =  272 bits (696), Expect = 6e-72
 Identities = 187/627 (29%), Positives = 286/627 (45%), Gaps = 40/627 (6%)
 Frame = +1

Query: 2689 KYLGLPMGIGRSKVDTFKFISSTVQARLRSWKNQFLSPAGD------------------- 2811
            KYLG+    G SK   F+ +   +  +L  W  QFLSPAG                    
Sbjct: 381  KYLGIMADFGTSKRKVFEEVRRKLDGKLHGWAEQFLSPAGKEVLIKAVAMAMPCYTMSCF 440

Query: 2812 -----ICR----FSSKFWWGSQIDGPNKIHWASWDKMAVAKDRGGLGFKDIQKFNDALLA 2964
                 +C+      ++FWW S  D  N IHWASW K++  K  GGLGF+D+Q FN ALLA
Sbjct: 441  KLPVTLCKEIEAAMARFWWKSHTD-KNGIHWASWTKLSQLKKAGGLGFRDLQCFNMALLA 499

Query: 2965 KQLWRILTQPNLLMSQVMKGKYFHNRKLVEVEGKGTDSWLWKCWLLARDTLALGVRYQIG 3144
            K  WRIL  P+ L++ ++  KYF     +    + + SW WK  LL R  L  G+R++IG
Sbjct: 500  KIGWRILLNPSSLLACLLHDKYFVGASFLTATSQKSSSWGWKGILLGRRLLESGLRWRIG 559

Query: 3145 DGKSVNIWESPWIPNKQGFKLHNSHVEGSNVRWVRELMSVDGKGWNSELVRKLFGGTDAE 3324
            DG +V +   PW+P    F+  + H++  ++  V EL+    K W  +++ + F   +A 
Sbjct: 560  DGTTVQVRNDPWLPTPYTFRTLSRHLDLPSM--VHELIDPLLKTWKKDVINRCFVPEEAS 617

Query: 3325 SILKIPISQTGRKDRLVWHLEAKGQYSVKSAYNAALSCCKK----EAEAPESSENRKKSD 3492
             IL IPI++ G  D+L+WH    G+Y+V+S Y  AL   +        A E+S +  +S 
Sbjct: 618  HILSIPINRWGCPDKLIWHFSMHGRYTVRSGYELALHLQRNGELGRKGAGEASSSSSQSA 677

Query: 3493 IMWSRTWKMHVKGKIKHFLWRSCHHHLATKDQLRLKGISLDPMCCFCGEEEEDLEHIFFN 3672
            + W   W +    K+K F+WR C + LA +  LR + +     C FCG ++E   HIFF 
Sbjct: 678  V-WKSVWHVDAPPKLKAFIWRGCSNFLAVRHNLRRRRVPCTGECGFCGFQDETQAHIFFE 736

Query: 3673 CERAKIIWKLSPVNWEGLRDFTDSFPKWWM-QVCQISRGGCVVDRIQLTTYLLWWLWKSR 3849
            C+ A+  W  SP+  +  +   D F   W   +  ++      + IQ   + LW +WK+R
Sbjct: 737  CDFARAFWFASPLQLDVSKLAGDDFISTWQHMMTTLNSSEHAAEAIQWFVFGLWRIWKAR 796

Query: 3850 NSWMFXXXXXXXXXXXXLAFEEWKEFDSAKLIPAAQAGLLNPVMPETESRWVSKGADYFH 4029
            N  +F            L  ++  EF +AK     QA  L PV       W         
Sbjct: 797  NLAVFDGVQADPIEAVLLLLKQVSEFRTAKQDLQPQA--LQPVSSPAPLSWCKPPPGLLK 854

Query: 4030 IAVGAVLS--KTGRVGLGGLVSCEDKVFHCAWSSSRDLATNLVDATLMAVREALIKAAQK 4203
            +   A  S  + G  G+G ++     +  CA        ++ +   L+A+R AL + A  
Sbjct: 855  VNCDAAWSAQRLGG-GVGWVIRDSFGLLLCAGGQGDLHGSSALMMELLAIRHALSECANF 913

Query: 4204 NWQKVVVCVDDKSLVCDLRKMNAADVKCSIIVEDIFHLANRLEFCCFEAMDYLCKMSCNR 4383
            +   ++V  D +  +  L    + D     IV DI  L   L    F         SCNR
Sbjct: 914  HLTDIIVESDSQKGIFMLNGRVSVDSDLEGIVFDIRQLVASLSRVSF----VFAPRSCNR 969

Query: 4384 LAIHAIEGEASQE-----WLHPIPSWI 4449
             A H++ G  S++     W H    W+
Sbjct: 970  -AAHSVAGFVSKQGGNYVWDHLGTDWL 995


>ref|XP_008355389.1| PREDICTED: putative ribonuclease H protein At1g65750 [Malus
            domestica]
          Length = 883

 Score =  265 bits (677), Expect = 3e-70
 Identities = 185/619 (29%), Positives = 285/619 (46%), Gaps = 40/619 (6%)
 Frame = +1

Query: 2689 KYLGLPMGIGRSKVDTFKFISSTVQARLRSWKNQFLSPAGD------------------- 2811
            KYLGL    G SK   F  I   ++ARL  W  QFLS AG                    
Sbjct: 249  KYLGLQADFGLSKKAVFXEIRDKMEARLAGWSEQFLSQAGKEVLIKAVAMXLPNFAMSCF 308

Query: 2812 -----ICRFSSK----FWW--GSQIDGPNKIHWASWDKMAVAKDRGGLGFKDIQKFNDAL 2958
                 +CR   K    +WW   SQ  G    HWASWDK+   K  GGLGFKDIQ FN A 
Sbjct: 309  KLPIGVCRDMEKAVRSYWWRGNSQKRG---CHWASWDKLMKQKSAGGLGFKDIQCFNLAF 365

Query: 2959 LAKQLWRILTQPNLLMSQVMKGKYFHNRKLVEVEGKGTD-SWLWKCWLLARDTLALGVRY 3135
            LAK  WR++  P  L++ V++ KY+   K  +  GKG + SW WK    +R  L  GVR+
Sbjct: 366  LAKIGWRLIQNPTSLLANVLRDKYYPG-KCFKDAGKGRNTSWGWKGIFESRTVLQHGVRW 424

Query: 3136 QIGDGKSVNIWESPWIPNKQGFKLHNSHVEGSNVRWVRELMSVDGKGWNSELVRKLFGGT 3315
            ++GDG+S+NI + PW+P    F      ++      VR+L+    K W   ++ + F   
Sbjct: 425  RVGDGESINIRKDPWLPTPTTFLA--KPLDNLEEIKVRDLIDPISKSWKEGVITEGFNRE 482

Query: 3316 DAESILKIPISQTGRKDRLVWHLEAKGQYSVKSAYNAALSCCKKEA---EAPESSENRKK 3486
            +A +IL IP+S++G  DRLVWH    G YSVK+ Y  A++  +  A   +   +S   +K
Sbjct: 483  EARTILSIPLSKSGCLDRLVWHYTVNGDYSVKTGYGVAMNXMENGALGKKGRGASSMLRK 542

Query: 3487 SDIMWSRTWKMHVKGKIKHFLWRSCHHHLATKDQLRLKGISLDPMCCFCGEEEEDLEHIF 3666
            +++ W R WK+ V  KIK FLW+ C+  LA +  L+ + I ++ +C  C   +E   H+F
Sbjct: 543  NNLTWKRIWKLQVPNKIKFFLWKCCNKALAVRHNLQRRQIRVENICGVCNTFDESENHLF 602

Query: 3667 FNCERAKIIWKLSPVNWEGLRDFTDSFPKWWMQVCQISRGGCVVDRI-QLTTYLLWWLWK 3843
            F C+ +   W  SP++          F + W ++C  ++     + I Q   + LW LWK
Sbjct: 603  FQCDFSHRFWFGSPLHINSHELAGADFLENWDKICTSTKNMDKAEEILQEVAFGLWRLWK 662

Query: 3844 SRNSWMFXXXXXXXXXXXXLAFEEWKEF-DSAKLIPAAQAGLLNPVMPETES---RWVSK 4011
            +RN  +F            L  +   EF ++  L    +  L++  +   +S    W   
Sbjct: 663  NRNDVVFNGVHRQHLEVMMLWRKNIYEFREALSLSLKCEDQLISNNLKTEQSPRLHWTKP 722

Query: 4012 GADYFHIAVGAV-LSKTGRVGLGGLVSCEDKVFHCAWSSSRDLATNLVDATLMAVREALI 4188
                  +   A   S + R G+G +      +   A  S   +  +   A   A+R AL+
Sbjct: 723  KFGTIKVNTDAAWCSSSLRTGVGWVGRDFAGLLQFAGGSGTSICHSAAAAEACAIRSALV 782

Query: 4189 KAAQKNWQKVVVCVDDKSLVCDLRKMNAADVKCSIIVEDIFHLANRLEFCCFEAMDYLCK 4368
             + +    KV++  D   ++  LRK ++ D     I+ DI  L  RL    F  +     
Sbjct: 783  SSIENGCDKVIIESDALGIIKMLRKESSHDYSIECILGDIEILVQRLTSVTFSFVPRESN 842

Query: 4369 MSCNRLAIHAIEGEASQEW 4425
             + + +A  A++      W
Sbjct: 843  HAAHSVARFALQQGGDYVW 861


>ref|XP_008372934.1| PREDICTED: putative ribonuclease H protein At1g65750 [Malus
            domestica]
          Length = 961

 Score =  265 bits (677), Expect = 8e-70
 Identities = 181/627 (28%), Positives = 272/627 (43%), Gaps = 40/627 (6%)
 Frame = +1

Query: 2689 KYLGLPMGIGRSKVDTFKFISSTVQARLRSWKNQFLSPAG-------------------- 2808
            KYLGL    G SK   F  I   +++R+  W  QFLS AG                    
Sbjct: 327  KYLGLQADFGLSKKAVFGEIRERIESRMVGWAEQFLSQAGKEILIKAVAMAMPNYAMSCF 386

Query: 2809 --------DICRFSSKFWWGSQIDGPNKIHWASWDKMAVAKDRGGLGFKDIQKFNDALLA 2964
                    DI +    +WW    D    IHW +W+K+   K  GGLGFKDIQ FN ALLA
Sbjct: 387  KLPIGVCKDIEKAVRNYWWRGSGDRKG-IHWVAWEKIRSQKRNGGLGFKDIQCFNLALLA 445

Query: 2965 KQLWRILTQPNLLMSQVMKGKYFHNRKLVEVEGKGTDSWLWKCWLLARDTLALGVRYQIG 3144
            K  WRI  QP+ L++ V++ KYF  +   E  G    SW WK    AR  L  G+R+++G
Sbjct: 446  KIGWRITLQPBSLJANVLREKYFPGKTFREASGGRGTSWGWKGIFEARKVLDKGIRWRVG 505

Query: 3145 DGKSVNIWESPWIPNKQGFKLHNSHVEGSNVRWVRELMSVDGKGWNSELVRKLFGGTDAE 3324
            DG  +NI E PW P    FK      EG     VR+L+    + W +++V+  F   D  
Sbjct: 506  DGNCINIREDPWFPKPSTFKAR--VXEGLQAIMVRDLIDPGSREWKTDMVKGGFLEKDVT 563

Query: 3325 SILKIPISQTGRKDRLVWHLEAKGQYSVKSAYNAALSCC------KKEAEAPESSENRKK 3486
            SIL IP+S+ G  D L+WH    G+Y+V++ Y  AL         KK    P S+ +   
Sbjct: 564  SILSIPLSRYGMSDXLIWHHXRNGEYTVRTGYGVALGLMENGDMGKKGRGMPSSAPSLSH 623

Query: 3487 SDIMWSRTWKMHVKGKIKHFLWRSCHHHLATKDQLRLKGISLDPMCCFCGEEEEDLEHIF 3666
               +W++ W + V  K+K F+W+ C++ LA +  L+ + + +   C  C + +E   H+F
Sbjct: 624  ---VWNKIWNLEVPNKMKFFVWKCCNNALAVRRNLKRRXLRVXNFCEGCMQPDETENHLF 680

Query: 3667 FNCERAKIIWKLSPVNWEGLRDFTDSFPKWWMQVCQISRG-GCVVDRIQLTTYLLWWLWK 3843
            F CE + I W  SP+    L    + F   W   C   +G     + +Q   + LW LWK
Sbjct: 681  FRCEISHIFWFCSPLQINSLELEGNDFLASWGSFCGRVKGKENEXELMQEFVFGLWHLWK 740

Query: 3844 SRNSWMFXXXXXXXXXXXXLAFEEWKEFDSAKL----IPAAQAGLLNPVMPETESRWVSK 4011
            +RN  +F            L      E+  A L          GL +P       +W   
Sbjct: 741  NRNDLIFKGVTHQPLDILGLWMRNLDEYREAGLQRTNDDQPTVGLASPAPAGRTGQWKKP 800

Query: 4012 GADYFHIAVGAVLSK-TGRVGLGGLVSCEDKVFHCAWSSSRDLATNLVDATLMAVREALI 4188
            G     +   A   K T   G+G +      +   A  +   L  +   A ++A+R AL 
Sbjct: 801  GFGTIKVNTDAAWRKETSCAGVGWVARDFAGLLQAAGGTGGRLCHSADAAEMLAIRSALD 860

Query: 4189 KAAQKNWQKVVVCVDDKSLVCDLRKMNAADVKCSIIVEDIFHLANRLEFCCFEAMDYLCK 4368
               +  ++ V +  D K+++  +R     D      + DI  LA  LE   F+ +     
Sbjct: 861  FCVRLGFKSVAIESDAKNIIQMIRNETTLDCSLECTLGDIATLARGLESVTFDFVSRESN 920

Query: 4369 MSCNRLAIHAIEGEASQEWLHPIPSWI 4449
             + + +A +         W H  P ++
Sbjct: 921  RAAHSVAKYVFLEGKDFVWDHIGPDFL 947


>ref|XP_008367240.1| PREDICTED: putative ribonuclease H protein At1g65750 [Malus
            domestica]
          Length = 806

 Score =  261 bits (668), Expect = 1e-69
 Identities = 180/587 (30%), Positives = 273/587 (46%), Gaps = 40/587 (6%)
 Frame = +1

Query: 2689 KYLGLPMGIGRSKVDTFKFISSTVQARLRSWKNQFLSPAGD------------------- 2811
            KYLGL    G SK   F  I   ++ARL  W  QFLS AG                    
Sbjct: 221  KYLGLQADFGLSKKAVFXEIRDKMEARLAGWSEQFLSQAGKEVLIKAVAMXLPNFAMSCF 280

Query: 2812 -----ICRFSSK----FWW--GSQIDGPNKIHWASWDKMAVAKDRGGLGFKDIQKFNDAL 2958
                 +CR   K    +WW   SQ  G    HWASWDK+   K  GGLGFKDIQ FN A 
Sbjct: 281  KLPIGVCRDMEKAVRSYWWRGNSQKRG---CHWASWDKLMKQKSAGGLGFKDIQCFNLAF 337

Query: 2959 LAKQLWRILTQPNLLMSQVMKGKYFHNRKLVEVEGKGTD-SWLWKCWLLARDTLALGVRY 3135
            LAK  WR++  P  L++ V++ KY+   K  +  GKG + SW WK    +R  L  GVR+
Sbjct: 338  LAKIGWRLIQNPTSLLANVLRDKYYPG-KCFKDAGKGRNTSWGWKGIFESRTVLQHGVRW 396

Query: 3136 QIGDGKSVNIWESPWIPNKQGFKLHNSHVEGSNVRWVRELMSVDGKGWNSELVRKLFGGT 3315
            ++GDG+S+NI + PW+P    F      ++      VR+L+    K W   ++ + F   
Sbjct: 397  RVGDGESINIRKDPWLPTPTTFLA--KPLDNLEEIKVRDLIDPISKSWKEGVITEGFNRE 454

Query: 3316 DAESILKIPISQTGRKDRLVWHLEAKGQYSVKSAYNAALSCCKKEA---EAPESSENRKK 3486
            +A +IL IP+S++G  DRLVWH    G YSVK+ Y  A++  +  A   +   +S   +K
Sbjct: 455  EARTILSIPLSKSGCLDRLVWHYTVNGDYSVKTGYGVAMNMMENGALGKKGRGASSMLRK 514

Query: 3487 SDIMWSRTWKMHVKGKIKHFLWRSCHHHLATKDQLRLKGISLDPMCCFCGEEEEDLEHIF 3666
            +++ W R WK+ V  KIK FLW+ C+  LA +  L+ + I ++ +C  C   +E   H+F
Sbjct: 515  NNLTWKRIWKLQVPNKIKFFLWKCCNKALAVRHNLQRRQIRVENICGVCNTFDESENHLF 574

Query: 3667 FNCERAKIIWKLSPVNWEGLRDFTDSFPKWWMQVCQISRGGCVVDRI-QLTTYLLWWLWK 3843
            F C+ +   W  SP++          F + W ++C  ++     + I Q   + LW LWK
Sbjct: 575  FQCDFSHRFWFGSPLHINSHELAGADFLENWDKICTSTKNMDKAEEILQEVAFGLWRLWK 634

Query: 3844 SRNSWMFXXXXXXXXXXXXLAFEEWKEF-DSAKLIPAAQAGLLNPVMPETES---RWVSK 4011
            +RN  +F            L  +   EF ++  L    +  L++  +   +S    W   
Sbjct: 635  NRNDVVFNGVHRQHLEVMMLWRKNIYEFREALSLSLKCEDQLISNNLKTEQSPRLHWTKP 694

Query: 4012 GADYFHIAVGAVLSKTG-RVGLGGLVSCEDKVFHCAWSSSRDLATNLVDATLMAVREALI 4188
                  +   A    +  R G+G +      +   A  S   +  +   A   A+R AL+
Sbjct: 695  KFGTIKVNTDAAWCXSSLRTGVGWVGRDFAGLLQFAGGSGTSICHSAAAAEACAIRSALV 754

Query: 4189 KAAQKNWQKVVVCVDDKSLVCDLRKMNAADVKCSIIVEDIFHLANRL 4329
               +    KV++  D   ++  LRK ++ D     I+ DI  L  RL
Sbjct: 755  SXIENGCDKVIIESDALGIIKMLRKXSSHDYSIECILGDIEILVQRL 801


>ref|XP_008351830.1| PREDICTED: putative ribonuclease H protein At1g65750 [Malus
            domestica]
          Length = 1106

 Score =  258 bits (658), Expect = 9e-67
 Identities = 198/641 (30%), Positives = 283/641 (44%), Gaps = 47/641 (7%)
 Frame = +1

Query: 2623 TPAGSRAQICTTLQGITEHISSKYLGLPMGIGRSKVDTFKFISSTVQARLRSWKNQFLSP 2802
            TP  ++  I  TL    +    KYLGL    G SK   F  +   V+ARL  W  QFLS 
Sbjct: 450  TPNRTKRDIEGTLGIQCKQGFGKYLGLQADFGHSKKAVFAEVRDKVEARLAGWTEQFLSQ 509

Query: 2803 AG----------------------------DICRFSSKFWWGSQIDGPNKIHWASWDKMA 2898
            AG                            DI +   KFWW    D  + IHW SWD+++
Sbjct: 510  AGKEVLIKSVAMALPNYAMSCFKLPIGVCRDIEKAIRKFWWKGN-DQRHGIHWVSWDRIS 568

Query: 2899 VAKDRGGLGFKDIQKFNDALLAKQLWRILTQPNLLMSQVMKGKYFHNRKLVEVEGKGTDS 3078
              K  GGLGFKDIQ FN ALLAK  WR+   P  L++ V+K KY       E       S
Sbjct: 569  KRKMSGGLGFKDIQCFNLALLAKIGWRLTCYPTSLLATVLKDKYHPGCTFKEAGRGKLTS 628

Query: 3079 WLWKCWLLARDTLALGVRYQIGDGKSVNIWESPWIPNKQGFKLHNSHVEGSNVRWVRELM 3258
            W WK    AR  L  G+R+++G+G+ +NI + PW P    F++     E  +   V EL+
Sbjct: 629  WGWKGIYEARKVLLQGIRWRVGNGQRINIRDDPWFPKPSTFRV--CPYENLDATMVCELI 686

Query: 3259 SVDGKGWNSELVRKLFGGTDAESILKIPISQTGRKDRLVWHLEAKGQYSVKSAY------ 3420
                  W    +   F   DAE+IL IP+S  G +D+L+WH    G YSVKS Y      
Sbjct: 687  EPASNSWKDNRIFAGFHREDAETILSIPLSHFGCEDKLMWHYSVNGVYSVKSGYGIAREM 746

Query: 3421 --NAALSCCKKEAEAPESSENRKKSDIMWSRTWKMHVKGKIKHFLWRSCHHHLATKDQLR 3594
              N AL   KK   AP      KK   +WSR W++ V  KIK F+WR C++ LA +  ++
Sbjct: 747  MENGALG--KKGLGAPSEPTQLKK---VWSRIWRLQVPNKIKFFIWRCCNNALAVRRNIQ 801

Query: 3595 LKGISLDPMCCFCGEEEEDLEHIFFNCERAKIIWKLSPVN-----WEGLRDFTDSFPKWW 3759
             + + +D +C  C   +E   H+FF C  + I W  SP++      EG  DF DS+ K+ 
Sbjct: 802  KRHMRVDNVCGVCNAVDETENHLFFRCRFSHIFWFSSPLHLNSHVLEGY-DFLDSWGKFQ 860

Query: 3760 MQVCQISRGGCVVDRI-QLTTYLLWWLWKSRNSWMFXXXXXXXXXXXXLAFEEWKEFDSA 3936
              +    +G    + I Q   + LW +WK+RN  +F            L ++   EF  A
Sbjct: 861  AGM----KGKENAEEICQEFAFGLWRIWKNRNDAVFKGLYRQPNEVMDLWWKNIIEFREA 916

Query: 3937 K--LIPAAQAGLLNPVMPETES--RWVSKGADYFHIAVGAVLSK-TGRVGLGGLVSCEDK 4101
               L   A++ ++ P+         W         I   A   K T R G+G +      
Sbjct: 917  STCLGDTARSTVVTPLSATARPSLHWQRPRYGTIKINTDAAWCKATLRAGVGWVGRDLAG 976

Query: 4102 VFHCAWSSSRDLATNLVDATLMAVREALIKAAQKNWQKVVVCVDDKSLVCDLRKMNAADV 4281
            V H A         +   A  +A+R AL       +  VV+  D K ++  +RK  + D 
Sbjct: 977  VLHAAGGLGTVRCLSAAAAEAIAIRNALKACITHRFNHVVIESDAKLIIQMIRKEVSVDC 1036

Query: 4282 KCSIIVEDIFHLANRLEFCCFEAMDYLCKMSCNRLAIHAIE 4404
                ++ DI  LA RL    F+ +      + + +A H  +
Sbjct: 1037 NLDCVLGDIEILAQRLMSVTFDFVPRESNHAAHLVAKHVFK 1077



 Score =  108 bits (270), Expect = 4e-20
 Identities = 57/170 (33%), Positives = 90/170 (52%)
 Frame = +2

Query: 2105 ALLDWNKSNKSNASTNIADCKGKMEDMMKQGGNRDWVKWRNEKDKLNRAYQEEEMFWKQK 2284
            +L +W K    N+   +   K ++   ++          + EK+ L  A+++EE++WK K
Sbjct: 4    SLKNWYKETGXNSKKKVELLKAEIRVALQSKEFSSGAVKQKEKE-LRVAHKDEELYWKTK 62

Query: 2285 SRTQWLNEGDRNTKFFHACTQQRRRLNCIERLIKQDGNQCGSTDEVIKEVSGFYENLFKS 2464
            SR QWLNEGD+NTKFFHA T +RR  N I  ++   G       ++     G++  LF+S
Sbjct: 63   SRNQWLNEGDKNTKFFHAQTLKRRSRNQIRGIVDSQGVWQEEDKKIADTAVGYFSELFQS 122

Query: 2465 VNPPAVHNILHGIPTSITPEMNECLTKPIDEKEIKTALFDLSPYKAPGMD 2614
              P  + +I+  +   I+PE N  LT P+   EI  A+  + P +APG D
Sbjct: 123  SRPGQIEDIVRNVDARISPEDNNALTGPVTTAEIVLAVSQIPPSRAPGPD 172


>ref|XP_012067550.1| PREDICTED: uncharacterized protein LOC105630354 [Jatropha curcas]
          Length = 1197

 Score =  258 bits (658), Expect = 2e-66
 Identities = 157/533 (29%), Positives = 256/533 (48%), Gaps = 30/533 (5%)
 Frame = +1

Query: 2686 SKYLGLPMGIGRSKVDTFKFISSTVQARLRSWKNQFLSPAG------------------- 2808
            S YLGLP  + +SK   F F+   +  R+ SW N+FLS AG                   
Sbjct: 592  SSYLGLPSLVMQSKRQIFNFLKERLWKRISSWNNKFLSRAGREVMLKAVAQAIPNYCMNV 651

Query: 2809 ---------DICRFSSKFWW-GSQIDGPNKIHWASWDKMAVAKDRGGLGFKDIQKFNDAL 2958
                     D+    ++FWW G++ DG + I+W SWD+M V+K  GG+GF+D+  FN AL
Sbjct: 652  FQLPTTLCNDLQVMMNRFWWNGNKFDG-HGINWLSWDRMCVSKSGGGMGFRDLHCFNVAL 710

Query: 2959 LAKQLWRILTQPNLLMSQVMKGKYFHNRKLVEVEGKGTDSWLWKCWLLARDTLALGVRYQ 3138
            L KQ WR+LT+ N L+ +V K KYF     +        S++WK  L ++  L  G  ++
Sbjct: 711  LGKQGWRLLTKTNTLLYRVFKAKYFPRGDFLSASAIPGQSFVWKSILSSKQVLIQGSHWR 770

Query: 3139 IGDGKSVNIWESPWIPNKQGFKLHNSHVEGSNVRWVRELMSVDGKGWNSELVRKLFGGTD 3318
            +G+G+++++  SPWIP   GF   +  +   N   V +L       W+   +  LF   D
Sbjct: 771  VGNGQNIHVTSSPWIPKDDGFFPDDGQLFIPNAMRVCDLFVAGENRWDVNKLMNLFSIRD 830

Query: 3319 AESILKIPISQTGRKDRLVWHLEAKGQYSVKSAYNAALSCCKKEAEAPESSENRKKSDIM 3498
              +IL IP+S   R+D+++WH   KG Y+VK+AY    +  +              +D +
Sbjct: 831  LRAILSIPLSIMNREDKIIWHFHKKGIYTVKTAYYEIFNSLR--------HHQLPSNDSV 882

Query: 3499 WSRTWKMHVKGKIKHFLWRSCHHHLATKDQLRLKGISLDPMCCFCGEEEEDLEHIFFNCE 3678
            W+R W +HV  KI+ F+WR+C + L T+ +L  +GI +   C FC + E   +H+ F C 
Sbjct: 883  WNRIWNLHVPPKIRDFMWRACRNILPTRCKLVERGIGVPSACLFCPDNETS-DHVLFACP 941

Query: 3679 RAKIIWKLSP-VNWEGLRDFTDSFPKWWMQVCQISRGGCVVDRIQLTTYLLWWLWKSRNS 3855
            RA+ +W++S  +   G+  F   F + ++ + +        D+      + W +W SRN 
Sbjct: 942  RARDVWRISRFILPSGMLSFNQFFEQVYLNLGR--------DKAATVATIAWKIWASRND 993

Query: 3856 WMFXXXXXXXXXXXXLAFEEWKEFDSAKLIPAAQAGLLNPVMPETESRWVSKGADYFHIA 4035
             ++            LA +    F +A+  PA+   L   V   + S  + +G D+    
Sbjct: 994  MLWSNKWLPPALIVRLASDYLHSFVAAQSFPASSPSL--TVGRASTSAPMVEGVDWLGFT 1051

Query: 4036 VGAVLSKTGRVGLGGLVSCEDKVFHCAWSSSRDLATNLVDATLMAVREALIKA 4194
             GA+   +  VG G L    +  F  A S   +   +   A  +A+R+ L+ A
Sbjct: 1052 DGAIFPSSDFVGFGCLFEDGEGSFSLAVSGFHEGGHDPAIAEALALRQGLLYA 1104



 Score = 98.6 bits (244), Expect = 5e-17
 Identities = 66/226 (29%), Positives = 102/226 (45%), Gaps = 1/226 (0%)
 Frame = +2

Query: 1250 MKVWVWNCRGLGGPSTISQFKEAFKHHLPDMCFLSETKKKKCFVATMCRKMKLEDRWMCV 1429
            M+V  WNCRG+G PS ++  K+    + P + FL ETK     +  + R +   D    V
Sbjct: 1    MRVISWNCRGVGLPSAVNALKDLTLSYKPGVLFLMETKTHASRMEEL-RVLLRFDFCFSV 59

Query: 1430 DPVGKSGGIFLCWSPDISIWDCVSSEFCFQVCFTSKGSSEKNWAIFVYASVIKE-IRQLQ 1606
            D VG  GG+ L W+  + +     + +   V   +   S  NW +  +    +   R+  
Sbjct: 60   DSVGIGGGLSLMWNRSVPL---SITSYSRNVVDCNVADSGGNWRLTCFYGYPESGRRRAS 116

Query: 1607 WNFLRQESVKWGDSWFLGGDFNDILHGYEKNGGKKRTDTSCREFKNFCWSLNCIEIPFQG 1786
            W  LR  S++    W   GDFND+    EK GG +R  +    F+      N  ++P  G
Sbjct: 117  WELLRSLSMRSPLPWLCVGDFNDVAATCEKEGGAQRAPSLINGFRQALVDANLSDLPHAG 176

Query: 1787 HSFTWANNREGEGFVEERLDRILASPEWISKNTTAMVKHIPMQSSD 1924
              FT+        F +ERLDR +++P W S+   A+   I    SD
Sbjct: 177  SIFTYVYRPNTPFFSKERLDRAVSTPSWGSRFPEALCTVITAPVSD 222


>ref|XP_012079594.1| PREDICTED: uncharacterized protein LOC105640000 [Jatropha curcas]
          Length = 1244

 Score =  258 bits (658), Expect = 2e-66
 Identities = 157/533 (29%), Positives = 256/533 (48%), Gaps = 30/533 (5%)
 Frame = +1

Query: 2686 SKYLGLPMGIGRSKVDTFKFISSTVQARLRSWKNQFLSPAG------------------- 2808
            S YLGLP  + +SK   F F+   +  R+ SW N+FLS AG                   
Sbjct: 639  SSYLGLPSLVMQSKRQIFNFLKERLWKRISSWNNKFLSRAGREVMLKAVAQAIPNYCMNV 698

Query: 2809 ---------DICRFSSKFWW-GSQIDGPNKIHWASWDKMAVAKDRGGLGFKDIQKFNDAL 2958
                     D+    ++FWW G++ DG + I+W SWD+M V+K  GG+GF+D+  FN AL
Sbjct: 699  FQLPTTLCNDLQVMMNRFWWNGNKFDG-HGINWLSWDRMCVSKSGGGMGFRDLHCFNVAL 757

Query: 2959 LAKQLWRILTQPNLLMSQVMKGKYFHNRKLVEVEGKGTDSWLWKCWLLARDTLALGVRYQ 3138
            L KQ WR+LT+ N L+ +V K KYF     +        S++WK  L ++  L  G  ++
Sbjct: 758  LGKQGWRLLTKTNTLLYRVFKAKYFPRGDFLSASAIPGQSFVWKSILSSKQVLIQGSHWR 817

Query: 3139 IGDGKSVNIWESPWIPNKQGFKLHNSHVEGSNVRWVRELMSVDGKGWNSELVRKLFGGTD 3318
            +G+G+++++  SPWIP   GF   +  +   N   V +L       W+   +  LF   D
Sbjct: 818  VGNGQNIHVTSSPWIPKDDGFFPDDGQLFIPNAMRVCDLFVAGENRWDVNKLMNLFSIRD 877

Query: 3319 AESILKIPISQTGRKDRLVWHLEAKGQYSVKSAYNAALSCCKKEAEAPESSENRKKSDIM 3498
              +IL IP+S   R+D+++WH   KG Y+VK+AY    +  +              +D +
Sbjct: 878  LRAILSIPLSIMNREDKIIWHFHKKGIYTVKTAYYEIFNSLR--------HHQLPSNDSV 929

Query: 3499 WSRTWKMHVKGKIKHFLWRSCHHHLATKDQLRLKGISLDPMCCFCGEEEEDLEHIFFNCE 3678
            W+R W +HV  KI+ F+WR+C + L T+ +L  +GI +   C FC + E   +H+ F C 
Sbjct: 930  WNRIWNLHVPPKIRDFMWRACRNILPTRCKLVERGIGVPSACLFCPDNETS-DHVLFACP 988

Query: 3679 RAKIIWKLSP-VNWEGLRDFTDSFPKWWMQVCQISRGGCVVDRIQLTTYLLWWLWKSRNS 3855
            RA+ +W++S  +   G+  F   F + ++ + +        D+      + W +W SRN 
Sbjct: 989  RARDVWRISRFILPSGMLSFNQFFEQVYLNLGR--------DKAATVATIAWKIWASRND 1040

Query: 3856 WMFXXXXXXXXXXXXLAFEEWKEFDSAKLIPAAQAGLLNPVMPETESRWVSKGADYFHIA 4035
             ++            LA +    F +A+  PA+   L   V   + S  + +G D+    
Sbjct: 1041 MLWSNKWLPPALIVRLASDYLHSFVAAQSFPASSPSL--TVGRASTSAPMVEGVDWLGFT 1098

Query: 4036 VGAVLSKTGRVGLGGLVSCEDKVFHCAWSSSRDLATNLVDATLMAVREALIKA 4194
             GA+   +  VG G L    +  F  A S   +   +   A  +A+R+ L+ A
Sbjct: 1099 DGAIFPSSDFVGFGCLFEDGEGSFSLAVSGFHEGGHDPAIAEALALRQGLLYA 1151



 Score = 82.8 bits (203), Expect = 3e-12
 Identities = 44/124 (35%), Positives = 72/124 (58%)
 Frame = +2

Query: 2243 NRAYQEEEMFWKQKSRTQWLNEGDRNTKFFHACTQQRRRLNCIERLIKQDGNQCGSTDEV 2422
            N   +E+++  KQ+++  W   GDRN+++FH   +QRRR+N I++L   DG    S  +V
Sbjct: 218  NAILEEDDIRVKQQAKLFWFKNGDRNSRYFHNSVKQRRRVNKIDKLRLPDGTWTTSDSDV 277

Query: 2423 IKEVSGFYENLFKSVNPPAVHNILHGIPTSITPEMNECLTKPIDEKEIKTALFDLSPYKA 2602
               V G++ +LF + N    + IL  +   I+ E NE L +   + E + ALFD+ P K+
Sbjct: 278  HSLVLGYFTDLF-AFNSTDENEILALVHPRISNEDNEQLLRVFSDDEFRVALFDMDPNKS 336

Query: 2603 PGMD 2614
            PG+D
Sbjct: 337  PGLD 340


>ref|XP_008367994.1| PREDICTED: uncharacterized protein LOC103431605 [Malus domestica]
          Length = 1647

 Score =  256 bits (655), Expect = 2e-65
 Identities = 197/651 (30%), Positives = 286/651 (43%), Gaps = 49/651 (7%)
 Frame = +1

Query: 2620 NTPAGSRAQICTTLQGITEHISSKYLGLPMGIGRSKVDTFKFISSTVQARLRSWKNQFLS 2799
            NT    RA I  +L   ++    KYLGL    G SK   F  I   ++A +  W  QFLS
Sbjct: 729  NTSKKMRANIVDSLMIQSKXGFGKYLGLQADFGHSKKAVFXEIRDKIEAXMSGWAEQFLS 788

Query: 2800 PAG----------------------------DICRFSSKFWWGSQIDGPNKIHWASWDKM 2895
             AG                            D+ R    +WW    +    IHW S D++
Sbjct: 789  QAGKEILVKTVAMALPNYAMSCFKLPIGVCRDVERAIRNYWWRGN-EQRKGIHWISXDRL 847

Query: 2896 AVAKDRGGLGFKDIQKFNDALLAKQLWRILTQPNLLMSQVMKGKYFHNRKLVEV-EGKGT 3072
               K  GGLGFKDIQ  N A LAK  WRI   P  L++ V++ KYF  +   E  +GK T
Sbjct: 848  MKQKKAGGLGFKDIQCVNLAFLAKIGWRITLNPMSLLASVLRDKYFPGKSFGEXPKGKNT 907

Query: 3073 DSWLWKCWLLARDTLALGVRYQIGDGKSVNIWESPWIPNKQGFKL--HNSHVEGSNVRWV 3246
             S  WK    AR  L LG+R+++G+GKS+NI E PW P    FK+   N+ VE      V
Sbjct: 908  -SXGWKGLFEARKVLNLGLRWRVGNGKSINIREDPWFPKPATFKVRPRNNLVE----TMV 962

Query: 3247 RELMSVDGKGWNSELVRKLFGGTDAESILKIPISQTGRKDRLVWHLEAKGQYSVKSAYNA 3426
             +L+  D K W ++L+   F   D  +IL IP+S  G  DRLVWH    G YSVKS Y+ 
Sbjct: 963  SDLIDSDTKIWRTDLIANGFHRDDVSTILIIPLSHAGSNDRLVWHYATNGIYSVKSGYSM 1022

Query: 3427 ALSCCKKEAEAPESSENRKKSD---IMWSRTWKMHVKGKIKHFLWRSCHHHLATKDQLRL 3597
            AL      A   +   N  +S+   ++W+  W++ V  KI+ F+WR C++ LA +  L+ 
Sbjct: 1023 ALKLMDDXALGRKXXGNPSESNKLKMVWNNIWRLQVPHKIRIFIWRCCNNALAVRRNLKR 1082

Query: 3598 KGISLDPMCCFCGEEEEDLEHIFFNCERAKIIWKLSPVN-----WEGLRDFTDSFPKWWM 3762
            + + +D +C  C    E   H+FF CE + + W  SP++      EG RDF +S    W 
Sbjct: 1083 RHMRVDNVCGVCXAVNETENHLFFRCEISHVFWFCSPLHLNSHVLEG-RDFLES----WC 1137

Query: 3763 QVCQISRGGCVVDRIQLT-TYLLWWLWKSRNSWMFXXXXXXXXXXXXLAFEEWKEFD--- 3930
              C   +     D I     + LW LWK+RN  +F               E WK+     
Sbjct: 1138 NFCDQVKDRIDADDIXHDFAFGLWRLWKNRNDVVFKGIYRQPLD----ILEAWKKSTGEY 1193

Query: 3931 SAKLIPAAQAGLLN-----PVMPETESRWVSKGADYFHIAVGAVLSK-TGRVGLGGLVSC 4092
             A L P  +   L       V     ++W         I   A   K T R+G+G L   
Sbjct: 1194 KASLAPDXEDHSLRMPKXIXVSDRICTKWKRPRFGTIKINTDAAWCKDTLRMGVGWLGRD 1253

Query: 4093 EDKVFHCAWSSSRDLATNLVDATLMAVREALIKAAQKNWQKVVVCVDDKSLVCDLRKMNA 4272
               +   A  S    + +   A   A+R AL+      +  +++  D  +++  L+K   
Sbjct: 1254 FAGLLQXAGGSGTGFSHSAAAAEASAIRFALLSCIDHGFDDIIIESDASTIIXMLKKEIL 1313

Query: 4273 ADVKCSIIVEDIFHLANRLEFCCFEAMDYLCKMSCNRLAIHAIEGEASQEW 4425
             D     I++DI  LA +L    F  +      + + +A +  +   S  W
Sbjct: 1314 VDFSIECILDDIEXLAQKLRSVSFAFVPREGNRAAHSVAKYVFKEGRSFSW 1364



 Score =  231 bits (588), Expect = 2e-57
 Identities = 146/460 (31%), Positives = 227/460 (49%), Gaps = 5/460 (1%)
 Frame = +2

Query: 1250 MKVWVWNCRGLGGPSTISQFKEAFKHHLPDMCFLSETKKKKCFVATMCRKMKLEDRWMCV 1429
            MK+  WNC+G+GG  T+    E  + H PDM  L ETK K      + R + + D W  V
Sbjct: 1    MKIITWNCQGIGGDLTVDNLLEQNRLHTPDMVILLETKNKSXNFIHLKRSLGM-DHWFIV 59

Query: 1430 DPVGKSGGIFLCWSPDISIWDCVSSEFCFQVCFTSKGSSEKNWAIF-VYASVIKEIRQLQ 1606
            +P G  GGI + W  D  +    S +F  ++    +     NW +F VYAS  ++ R+ Q
Sbjct: 60   EPRGIXGGICVFWRDDTPVVLXKSEDFXVELKLWDE-KMNCNWRLFGVYASTDEKKRREQ 118

Query: 1607 WNFLRQESVKWGDSWFLGGDFNDILHGYEKNGGKKRTDTSCREFKNFCWSLNCIEIPFQG 1786
            W  L +   +  D   L GDFND L   E  GG  R   S R+F+NF      +++ ++G
Sbjct: 119  WQELSKRIGQERDRCLLIGDFNDXLCNXEXEGGNYRPAVSLRDFRNFXAREELMDLGYEG 178

Query: 1787 HSFTWANNREGEGFVEERLDRILASPEWISKNTTAMVKHIPMQSSDXXXXXXXXXXXQIV 1966
            + FTW NNRE    +++RLDR +A+  W        +KH+ ++ SD              
Sbjct: 179  YPFTWRNNRESMP-IQQRLDRGMATMGWYEMYPNTKIKHVLLEGSDHXLLLLSTEKELNR 237

Query: 1967 RKKRFYFDSRWTKVDKTKVVVENAWKIPVFGTPLNQIQGRIKNCRMALLDWNKSNKSNAS 2146
            + ++F FD RW+K ++ + +V   W+  + G+   +   ++K+ R  L  W K    N++
Sbjct: 238  KGRQFSFDGRWSKSEECRTLVGEEWRDKIKGSHAFRFCDKLKHLRRRLKVWYKGRGXNSA 297

Query: 2147 TNIADCKGKMEDMMKQGGNRDWVKWRNEKDKLNRAYQEEEMFWKQKSRTQWLNEGDRNTK 2326
              I   K ++               + EK+ +  A+ + E +WK KSR QWL EGD+NTK
Sbjct: 298  KMILQLKEEIRVAYISNEFASKEVKQKEKEXI-AAHXQXETYWKVKSRNQWLREGDKNTK 356

Query: 2327 FFHACTQQRRRLNCIERLIKQDGNQCGSTDEVIKEVSG----FYENLFKSVNPPAVHNIL 2494
            FFHA T +RRR N I  +  +DG   G   + +K +      ++ +LF+S  P  V  I 
Sbjct: 357  FFHAQTLKRRRFNTIRGI--EDGR--GIWQZSLKGIGDTAIEYFSDLFQSCKPNLVEEIQ 412

Query: 2495 HGIPTSITPEMNECLTKPIDEKEIKTALFDLSPYKAPGMD 2614
              I + ++ E N  LT  +   EI  A + +   +APG D
Sbjct: 413  SCIESRLSIEDNXGLTAMVTXCEIMEAAYQIPXXRAPGPD 452


>ref|XP_009113843.1| PREDICTED: putative ribonuclease H protein At1g65750 [Brassica rapa]
          Length = 896

 Score =  251 bits (640), Expect = 2e-65
 Identities = 178/620 (28%), Positives = 280/620 (45%), Gaps = 42/620 (6%)
 Frame = +1

Query: 2632 GSRA--QICTTLQGI----TEHISSKYLGLPMGIGRSKVDTFKFISSTVQARLRSWKNQF 2793
            GSR   Q+ T ++ I     E    KYLG+P   GR K +  +++ +TV+A+   W ++F
Sbjct: 253  GSRVKDQVKTQMRNILGIHNEGGGGKYLGIPEQFGRKKTENLEYVVATVKAKTNGWHHRF 312

Query: 2794 LSPAG----------------------------DICRFSSKFWWGSQIDGPNKIHWASWD 2889
            LSP G                            DI    ++FWWG   DG   +HW +W 
Sbjct: 313  LSPGGKEVLTKSIASATPVYPMNVFKMPKKVCDDINNTLAQFWWGKS-DGSKGMHWFAWQ 371

Query: 2890 KMAVAKDRGGLGFKDIQKFNDALLAKQLWRILTQPNLLMSQVMKGKYFHNRKLVEVEGKG 3069
            +M++ K  GG+GF+D +KFNDALLAKQ+WRIL +PN LM++V+KGKYF N  +++   K 
Sbjct: 372  RMSLPKKEGGMGFRDFEKFNDALLAKQVWRILIKPNSLMARVLKGKYFPNSNILKAGTKK 431

Query: 3070 TDSWLWKCWLLARDTLALGVRYQIGDGKSVNIWESPWIPNKQGFKLHNSHVEGSNVRWVR 3249
              S++W   L  +  L  G+R+ IG+G+SV++W  PW+P     +      + + +  V 
Sbjct: 432  QSSYIWNSLLHGQALLKRGLRFIIGNGESVSLWADPWLPTSPP-RSPIPKDQSNPMTKVS 490

Query: 3250 ELMSVDGKGWNSELVRKLFGGTDAESILKIPISQTGRKDRLVWHLEAKGQYSVKSAYNAA 3429
            ELM  +  GWN EL+R      DAE IL + +      D LVWH    G+YSVKS Y  A
Sbjct: 491  ELMKQNQTGWNEELIRHTIVEADAEEILSMKLCAYADTDPLVWHYNKSGEYSVKSGYWLA 550

Query: 3430 LSCCKKEAEAPESSENRKKSDIMWSRTWKMHVKGKIKHFLWRSCHHHLATKDQLRLKGIS 3609
                +     P        S I+ +  WK+    K++HFLW+     L     L+ + ++
Sbjct: 551  THDPQDLPIEPPPG-----SIILKNMIWKLPTAPKLQHFLWKMVTSSLPLGSNLQRRHVT 605

Query: 3610 LDPMCCFCGEEEEDLEHIFFNCERAKIIWKLSPVNWEGLRDFTDSFPKWWMQVCQISRGG 3789
                C  C ++EE  EH+FF C  A+ IW+ S +          +     M + Q  +  
Sbjct: 606  TSVKCPHC-QQEETTEHLFFECFYAQRIWRASGLPHNIFYQAQSTLEDKLMALLQ--KIP 662

Query: 3790 CVVDRIQ-LTTYLLWWLWKSRNSWMFXXXXXXXXXXXXLAF---EEWKEFDSAKLIPAAQ 3957
             + D ++ L  ++LW +WK RN  +F             A+   +EW E   +      +
Sbjct: 663  NLPDHLRHLPWWILWRIWKCRNKMIFQQTSIHWRTTLQSAYFDTKEWLEAYQSVDKDEDR 722

Query: 3958 AGLLNPVMPETESRWVSKGADYFHIAVGAVLSKTGRVGLGGLVSCEDK-VFHCAWSSSRD 4134
             GL    M    ++W      +         +   R    G +  +D   F  A  +S  
Sbjct: 723  QGLRRD-MEHQRNKWTKPPTGFVKCNYDGAFNNIQRETKAGWIIRDDMGRFKGAAHASNQ 781

Query: 4135 LATNLVDATLMAVREALIKAAQKNWQKVVVCVDDKSLVCDLRKMNAADVKCSIIVEDIFH 4314
              T  ++  L A+  A++    K + K V+   D   V  L    + ++  +  + DI+ 
Sbjct: 782  QPTTALEGELQALLLAMMNCWSKGY-KHVIFEGDNINVMKLANGESTNIDVTNWIRDIWR 840

Query: 4315 LANRLE---FCCFEAMDYLC 4365
               + E   FC       LC
Sbjct: 841  WPAKFEEIKFCWTNRNSNLC 860


>ref|XP_009140270.1| PREDICTED: putative ribonuclease H protein At1g65750 [Brassica rapa]
          Length = 866

 Score =  249 bits (636), Expect = 4e-65
 Identities = 143/450 (31%), Positives = 222/450 (49%), Gaps = 33/450 (7%)
 Frame = +1

Query: 2689 KYLGLPMGIGRSKVDTFKFISSTVQARLRSWKNQFLSPAG-------------------- 2808
            KYLG+P   GR K +  K+++  V+ + + W+N+FLSP G                    
Sbjct: 249  KYLGIPEQFGRKKAEILKYVTEKVKTKTQGWQNKFLSPGGKEVLIKSVASATSVYPMNTF 308

Query: 2809 --------DICRFSSKFWWGSQIDGPNKIHWASWDKMAVAKDRGGLGFKDIQKFNDALLA 2964
                    +I    + FWWG   DG   +HW +W++M++ K  GG+GF+DI+KFNDALL 
Sbjct: 309  KLPKSVCEEINNILATFWWGKD-DGSKGMHWFAWNRMSLPKKEGGMGFRDIEKFNDALLG 367

Query: 2965 KQLWRILTQPNLLMSQVMKGKYFHNRKLVEVEGKGTDSWLWKCWLLARDTLALGVRYQIG 3144
            KQ WRILT+PN LM++VMKG+YF +  ++       +S++W+  L  +D L  GVR  IG
Sbjct: 368  KQAWRILTKPNSLMARVMKGRYFPSTSILNARETRQNSYIWRSILHGKDLLTKGVRCVIG 427

Query: 3145 DGKSVNIWESPWIPN---KQGFKLHNSHVEGSNVRWVRELMSVDGKGWNSELVRKLFGGT 3315
            +G +++ W  PW+P    +    + + H        V + M    K WN EL+R      
Sbjct: 428  NGNTIDTWTDPWLPTNPPRAPVPIFDQHGNSK----VSDFMHRGLKEWNEELIRNTMNQA 483

Query: 3316 DAESILKIPISQTGRKDRLVWHLEAKGQYSVKSAYNAALSCCKKEAEAPESSENRKKSDI 3495
            DAE IL I +  +   D+LVWH    G Y+VKS Y  A      +   P   + + K  I
Sbjct: 484  DAEEILAIKLCSSDEDDQLVWHYNKTGDYTVKSGYWLATHTPNNQQVIPPPGDTQLKQLI 543

Query: 3496 MWSRTWKMHVKGKIKHFLWRSCHHHLATKDQLRLKGISLDPMCCFCGEEEEDLEHIFFNC 3675
                 WK++   K+K F+W+     L     L+ + I+    C  C  +EE  +H+FF+C
Sbjct: 544  -----WKLNTAPKVKQFMWKMITLSLPLGKNLQRRHITNSVKCPHC-YQEETADHLFFDC 597

Query: 3676 ERAKIIWKLSPVNWEG-LRDFTDSFPKWWMQVCQISRGGCVVDRI-QLTTYLLWWLWKSR 3849
              A+ IW+ S     G LR       K  +    +++   + D + QL  ++LW +WK R
Sbjct: 598  INAQCIWRASGYPNSGLLRSQVTLEAKLSL---LLNQDATIPDHLKQLPWWILWRIWKDR 654

Query: 3850 NSWMFXXXXXXXXXXXXLAFEEWKEFDSAK 3939
            N  +F             A+++ KE+  A+
Sbjct: 655  NKMIFQQKLTHWRYLLQAAYQDTKEWMEAQ 684


>ref|XP_008391838.1| PREDICTED: uncharacterized protein LOC103454030 [Malus domestica]
          Length = 1374

 Score =  253 bits (645), Expect = 1e-64
 Identities = 180/620 (29%), Positives = 271/620 (43%), Gaps = 41/620 (6%)
 Frame = +1

Query: 2689 KYLGLPMGIGRSKVDTFKFISSTVQARLRSWKNQFLSPAGD------------------- 2811
            KYLGL    G SK   F  I   ++ARL  W  QFLS AG                    
Sbjct: 680  KYLGLQADFGHSKKAVFAEIRDKIEARLAGWSEQFLSQAGKEVMIKAVAMALPNYAMSCF 739

Query: 2812 -----ICRFSSK----FWWGSQIDGPNKIHWASWDKMAVAKDRGGLGFKDIQKFNDALLA 2964
                 +CR   K    +WW          HW SWD++   K  GG+GFKDIQ FN A LA
Sbjct: 740  KLPIGVCRDVEKAVRSYWWRGNTQ-KRGCHWTSWDRLMKQKSAGGMGFKDIQCFNLAFLA 798

Query: 2965 KQLWRILTQPNLLMSQVMKGKYFHNRKLVEVEGKGTD-SWLWKCWLLARDTLALGVRYQI 3141
            K  WR++  P  L++ V+K KY+   K  +  GKG + SW WK        L  GVR+++
Sbjct: 799  KIGWRLIQNPTSLLATVLKDKYYPG-KCFKDAGKGRNTSWGWKGIFEGHMVLQHGVRWRV 857

Query: 3142 GDGKSVNIWESPWIPNKQGFKLHNSHVEGSNVRWVRELMSVDGKGWNSELVRKLFGGTDA 3321
            GDG+S+NI + PW+P    F      ++      VR+L+    K W  E++   F   +A
Sbjct: 858  GDGESINIQKDPWLPTPTTFLA--KPLDSLEETKVRDLIDPISKSWKEEVILAGFNRDEA 915

Query: 3322 ESILKIPISQTGRKDRLVWHLEAKGQYSVKSAYNAALSCC------KKEAEAPESSENRK 3483
              IL IP+S++G  DRLVWH    G YSVK+ Y   ++        KK   AP  SE+R 
Sbjct: 916  RKILSIPLSKSGCIDRLVWHYTVNGDYSVKTGYGVVMNLMENGALGKKGRGAP--SEHR- 972

Query: 3484 KSDIMWSRTWKMHVKGKIKHFLWRSCHHHLATKDQLRLKGISLDPMCCFCGEEEEDLEHI 3663
            K+++ W R WK+    KIK F+W+ C+  LA +  L+ + I ++ +C  C   +E   H+
Sbjct: 973  KNNLTWKRIWKLQAPNKIKFFIWKCCNKALAVRHNLQRRQIRVENICGVCNTFDESENHL 1032

Query: 3664 FFNCERAKIIWKLSPVNWEGLRDFTDSFPKWWMQVCQISRGGCVVDRI-QLTTYLLWWLW 3840
            FF CE +   W  SP++          F + W ++C  ++     + I Q   + LW LW
Sbjct: 1033 FFQCEFSHRFWFGSPLHINSHELAGVDFLESWDKICTSTKNMEKAEEILQEVAFGLWRLW 1092

Query: 3841 KSRNSWMFXXXXXXXXXXXXLAFEEWKEFDSAKLIPAAQAGLLNPVMPETESR----WVS 4008
            K+RN  +F            L  +   E+  A  +       L     +T  R    W  
Sbjct: 1093 KNRNDVVFNGVHRQHLEVMMLWRKNISEYREAMPLNLKSDCYLISKTLKTVQRPKLHWTK 1152

Query: 4009 KGADYFHIAVGAV-LSKTGRVGLGGLVSCEDKVFHCAWSSSRDLATNLVDATLMAVREAL 4185
                   +   A     + R G+G +      +   A  S   +  +       A+R AL
Sbjct: 1153 PKFGIIKVNTDAAWCGSSLRTGVGWVGRDFAGLLQFAGGSGTGICHSAAAVEACAIRSAL 1212

Query: 4186 IKAAQKNWQKVVVCVDDKSLVCDLRKMNAADVKCSIIVEDIFHLANRLEFCCFEAMDYLC 4365
            +      + KV++  D   ++  L K++  D     I+ DI  L  RL    F  +    
Sbjct: 1213 MACIDNGFDKVIIDSDALVIIKMLSKVSPHDYSIECILGDIEVLVQRLMSVTFSFVPRES 1272

Query: 4366 KMSCNRLAIHAIEGEASQEW 4425
             ++ + +A  A++      W
Sbjct: 1273 NLAAHSVAKFALQQGGDYVW 1292



 Score =  157 bits (396), Expect = 7e-35
 Identities = 119/456 (26%), Positives = 199/456 (43%), Gaps = 1/456 (0%)
 Frame = +2

Query: 1250 MKVWVWNCRGLGGPSTISQFKEAFKHHLPDMCFLSETKKKKCFVATMCRKMKLEDRWMCV 1429
            MK+  WNC+G+GG  T+    EA + H PD+  L ETK K      +   + LE  +  V
Sbjct: 1    MKLITWNCQGIGGDLTVDNLLEANRLHTPDIVILLETKNKSHRYGFLKXSLGLEYMF-AV 59

Query: 1430 DPVGKSGGIFLCWSPDISIWDCVSSEFCFQVCFTSKGSSEKNWAIF-VYASVIKEIRQLQ 1606
             P G SGG+ + W     +    S  F  ++    +    K W +F +YAS  ++ R+ Q
Sbjct: 60   XPHGLSGGLCVFWKDGSQVTLLKSENFVIEMKIWDE-ILNKQWRLFAIYASTDEKKRKDQ 118

Query: 1607 WNFLRQESVKWGDSWFLGGDFNDILHGYEKNGGKKRTDTSCREFKNFCWSLNCIEIPFQG 1786
            W  L +   +  D   L  DFNDIL   EK GG  R  +S R+F+ F      +++ ++G
Sbjct: 119  WKRLGKRIEQESDCCLLIRDFNDILCNEEKEGGNYRPASSMRDFREFVARNELMDLGYEG 178

Query: 1787 HSFTWANNREGEGFVEERLDRILASPEWISKNTTAMVKHIPMQSSDXXXXXXXXXXXQIV 1966
            + FTW NNRE    +++RLDR LA+  W +      ++H+ ++ SD           Q+ 
Sbjct: 179  YPFTWRNNRESLP-IQQRLDRGLATMGWNNTYLDTTIRHLVLEGSDHAMLVLSTELIQVR 237

Query: 1967 RKKRFYFDSRWTKVDKTKVVVENAWKIPVFGTPLNQIQGRIKNCRMALLDWNKSNKSNAS 2146
            R ++F +D+RW+K+++ + +V + W+  + G+   +I  ++K  R  L  W +    N+ 
Sbjct: 238  RGRKFSYDARWSKLEECRELVAHEWEGHLGGSLAFRICEKLKMLRKRLKVWYQGRGRNSK 297

Query: 2147 TNIADCKGKMEDMMKQGGNRDWVKWRNEKDKLNRAYQEEEMFWKQKSRTQWLNEGDRNTK 2326
              I                       N KD++ RAY          +  Q+ +E  +   
Sbjct: 298  QAI----------------------DNLKDEIRRAY----------TSNQFASEVVK--- 322

Query: 2327 FFHACTQQRRRLNCIERLIKQDGNQCGSTDEVIKEVSGFYENLFKSVNPPAVHNILHGIP 2506
                 T+++R  +C                                  P  +  +   + 
Sbjct: 323  -----TERKRSSSC---------------------------------RPSKIREVEDCME 344

Query: 2507 TSITPEMNECLTKPIDEKEIKTALFDLSPYKAPGMD 2614
            T ++PE N  L  PI ++EIK A F +   +A G D
Sbjct: 345  TRVSPEDNRDLVAPITDEEIKEATFQIPSERALGPD 380


>ref|XP_009149305.1| PREDICTED: putative ribonuclease H protein At1g65750 [Brassica rapa]
          Length = 963

 Score =  248 bits (634), Expect = 2e-64
 Identities = 184/645 (28%), Positives = 293/645 (45%), Gaps = 34/645 (5%)
 Frame = +1

Query: 2617 KNTPAGSRAQICTTLQGITEHISSKYLGLPMGIGRSKVDTFKFISSTVQARLRSWKNQFL 2796
            K+ P  +R+Q    L+  T     KYLGLP    RSKV  F+ + S V+ ++  W NQFL
Sbjct: 327  KSIPEEARSQFHQILKIHTLGGGGKYLGLPEQFSRSKVSDFQGVVSIVKNQISPWYNQFL 386

Query: 2797 SPAG----------------------------DICRFSSKFWWGSQIDGPNKIHWASWDK 2892
              AG                            DI    S FWWG   DG  K  W SW +
Sbjct: 387  LSAGKEVLIKSVLQAKPVYPMSCFLLPKSVCDDINSQLSGFWWGRN-DGKRKFSWISWQR 445

Query: 2893 MAVAKDRGGLGFKDIQKFNDALLAKQLWRILTQPNLLMSQVMKGKYFHNRKLVEVEGKGT 3072
            + + K+ GG+GF D+  FN ALLAKQ W+I   P  L+S++ KG+Y+++   ++     +
Sbjct: 446  LCLPKNEGGMGFCDLHGFNVALLAKQAWKIEQNPTSLLSRIYKGRYYNSSTFLQSTSLTS 505

Query: 3073 DSWLWKCWLLARDTLALGVRYQIGDGKSVNIWESPWIPNKQGFKLHNSHVEGSNVRWVRE 3252
             S+ WK   + +D L  G+  QIG+G++ N+W   W+      KL +  +   N++ V E
Sbjct: 506  SSYGWKSIQVGKDLLKKGLVMQIGNGQNTNVWNDQWLQTSLPRKLISPCLY-PNMK-VSE 563

Query: 3253 LMSVDGKGWNSELVRKLFGGTDAESILKIPISQTGRKDRLVWHLEAKGQYSVKSAY--NA 3426
            L++     WN  ++ +LF   D   I KI +S+  + DR VW   +  +YSVKS Y  N 
Sbjct: 564  LINQSSASWNEAILEELFVPEDIIEIKKIRLSRFNQCDRYVWPFTSDCKYSVKSGYWTNT 623

Query: 3427 ALSCCKKEAEAPESSENRKKSDIMWSRTWKMHVKGKIKHFLWRSCHHHLATKDQLRLKGI 3606
             +       E P  S   K      ++ W + +  KI+HF W++    LAT  QL  +GI
Sbjct: 624  HVFSEDDPIEPPPGSFQLK------NQIWDLEILPKIQHFFWKAVTGALATFAQLCSRGI 677

Query: 3607 SLDPMCCFCGEEEEDLEHIFFNCERAKIIWKLS--PVNWEGLRDFTDSFPKWWMQVCQIS 3780
            +++P+C  CG EEE + H+ F C  A   W+ S  P+N     D   +  + +  + +  
Sbjct: 678  NINPICQRCGLEEETINHVLFLCPHALATWRCSGLPLNGIQSHDLERNIAELFFLLHRRD 737

Query: 3781 RGGCVVDRIQLTTYLLWWLWKSRNSWMFXXXXXXXXXXXXLAFEEWKEFDSAKLIPAAQA 3960
                V    +LT +LLW++WKSRN ++              A E   E++S  +   A  
Sbjct: 738  TPSAV---SKLTFWLLWYIWKSRNEFLLAQRNVHPMEDVKRAVEGNVEWNSNFVSAKANG 794

Query: 3961 G--LLNPVMPETESRWVSKGADYFHIAVGAVLSKTGRVGLGGLVSCEDKVFHCAWSSSRD 4134
            G  + N         W+    D       +   +T   G+G +V  E+  F  A    ++
Sbjct: 795  GRQVRNSKWEPPPLGWLKCNFD------SSFRKETMTAGIGWIVRDENGHFLKAGMVIQE 848

Query: 4135 LATNLVDATLMAVREALIKAAQKNWQKVVVCVDDKSLVCDLRKMNAADVKCSIIVEDIFH 4314
              T+ + A  +A   AL +     W++V    D   L   +  M    V    I+ DI H
Sbjct: 849  NVTSPLQAEALAFLYALQQVWINGWRRVWFEGDSSELARIINTMEQDHVSLGNILYDIRH 908

Query: 4315 LANRLEFCCFEAMDYLCKMSCNRLAIHAIEGEASQEWLHPIPSWI 4449
              ++L +C  E++     M+ + L+ + +    S   L+  P W+
Sbjct: 909  WMSKLTWCSLESVHREHNMAADVLSKNIMRLNVSVVVLNSPPCWL 953


>ref|XP_008231382.1| PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
          Length = 634

 Score =  240 bits (613), Expect = 6e-64
 Identities = 173/621 (27%), Positives = 275/621 (44%), Gaps = 34/621 (5%)
 Frame = +1

Query: 2689 KYLGLPMGIGRSKVDTFKFISSTVQARLRSWKNQFLSPAG-------------------- 2808
            KYLG+    G SK   F+ +   +  +L  W  +FLSPAG                    
Sbjct: 15   KYLGIMADFGTSKRKVFEEVRRKLDGKLHGWAEEFLSPAGKEVIIKAVAMAMSCFKLPVS 74

Query: 2809 ---DICRFSSKFWWGSQIDGPNKIHWASWDKMAVAKDRGGLGFKDIQKFNDALLAKQLWR 2979
               +I    ++FWW S  +  + IHW SW K++  K  GGLGF+DIQ FN ALLAK  WR
Sbjct: 75   LCGEIEAVIARFWWKSHKE-KHDIHWVSWAKLSQLKKAGGLGFRDIQCFNLALLAKIGWR 133

Query: 2980 ILTQPNLLMSQVMKGKYFHNRKLVEVEGKGTDSWLWKCWLLARDTLALGVRYQIGDGKSV 3159
            IL  P+ L++ ++  KYF     + V  + + SW WK  L  R  L  G+R++IGDG  V
Sbjct: 134  ILHNPSSLLACLLHDKYFVGASFLFVTSQKSSSWGWKGILHGRRLLESGLRWRIGDGSKV 193

Query: 3160 NIWESPWIPNKQGFKLHNSHVEGSNVRWVRELMSVDGKGWNSELVRKLFGGTDAESILKI 3339
             +   PW+P+   F+    H +   +  V +L+    K W  +++ + F   +A  IL I
Sbjct: 194  QVRNDPWLPSPYTFRTLLRHPDLPLM--VHKLIDPLLKAWKQDVINRCFAPKEATRILSI 251

Query: 3340 PISQTGRKDRLVWHLEAKGQYSVKSAYNAALSCCKK----EAEAPESSENRKKSDIMWSR 3507
            PIS+ G   +L+WH    G+Y V+S Y  AL   +        A E+S +   S ++W  
Sbjct: 252  PISRWGCPYKLIWHFSTHGRYIVRSGYELALHLQRNGELGRQGAGETSGSCSHS-VVWKS 310

Query: 3508 TWKMHVKGKIKHFLWRSCHHHLATKDQLRLKGISLDPMCCFCGEEEEDLEHIFFNCERAK 3687
             W +    K+K F+WR C + L+ +  LR + +S       CG ++E   H+FF C+ A+
Sbjct: 311  IWHVDAPPKLKAFIWRGCSNFLSVRHNLRWRQVSCPGEYGLCGLQDETQAHLFFKCDFAR 370

Query: 3688 IIWKLSPVNWEGLRDFTDSFPKWWMQVCQISRGG-CVVDRIQLTTYLLWWLWKSRNSWMF 3864
              W  SP+  +  +   + F   W  +  I +      + IQ   + LW +WK+RN  +F
Sbjct: 371  AFWFASPLQLDVNKLEGEDFISTWRYMMLIFKSSEHAAEAIQWFVFGLWRIWKARNIAVF 430

Query: 3865 XXXXXXXXXXXXLAFEEWKEFDSAKLIPAAQAGL-LNPVMPETESRWVSKGADYFHIAVG 4041
                        L   + KE+ +AK     +  L  N  +P+    ++            
Sbjct: 431  EGVKADPKKAVHLLLNQVKEYRAAKQAVQPRPHLATNSSVPQNPPGFLKVN------CYA 484

Query: 4042 AVLSKTGRVGLGGLVSCEDKVFHCAWSSSRDLATNLVDATLMAVREALIKAAQKNWQKVV 4221
            A  + T R G+G ++     +  CA        ++ +   L+A+R AL      +   ++
Sbjct: 485  AWSALTSRGGVGWVIRDTFGLLLCAGGQGDFHGSSALMMELLAIRHALSACVHFHLTDLI 544

Query: 4222 VCVDDKSLVCDLRKMNAADVKCSIIVEDIFHLANRLEFCCFEAMDYLCKMSCNRLAIHAI 4401
            V  D +  +  L    A D     I+ DI      L    F         +CN+ A H +
Sbjct: 545  VESDTQKGILMLTGQIAIDSDLEGIIFDIQQFVASLSRISF----VFAPKACNK-AAHTV 599

Query: 4402 EGEASQE-----WLHPIPSWI 4449
             G  S++     W H    W+
Sbjct: 600  AGFVSKQGGNHVWDHLGTDWL 620


>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1369

 Score =  250 bits (639), Expect = 8e-64
 Identities = 174/620 (28%), Positives = 278/620 (44%), Gaps = 32/620 (5%)
 Frame = +1

Query: 2689 KYLGLPMGIGRSKVDTFKFISSTVQARLRSWKNQFLSPAG-------------------- 2808
            KYLGLP  IG SK   F+ I   V  +L+ WK ++LS AG                    
Sbjct: 758  KYLGLPTFIGSSKKRVFQAIQDRVWKKLKGWKGKYLSQAGREVLIKAVAQAIPTYAMQCF 817

Query: 2809 --------DICRFSSKFWWGSQIDGPNKIHWASWDKMAVAKDRGGLGFKDIQKFNDALLA 2964
                     I +    F+WG Q +   ++ W +W+K+ + K  GGLG ++   FN ALLA
Sbjct: 818  VIPKSIIDGIEKMCRNFFWG-QKEEERRVAWVAWEKLFLPKKEGGLGIRNFDVFNRALLA 876

Query: 2965 KQLWRILTQPNLLMSQVMKGKYFHNRKLVEVEGKGTDSWLWKCWLLARDTLALGVRYQIG 3144
            KQ WRILT+P+ LM++V+KGKYF     +E       S+  K  L AR  +  G+   IG
Sbjct: 877  KQAWRILTKPDSLMARVIKGKYFPRSNFLEARVSPNMSFTCKSILSARAVIQKGMCRVIG 936

Query: 3145 DGKSVNIWESPWIPNKQGFKLHNSH--VEGSNVRWVRELMSVDGKGWNSELVRKLFGGTD 3318
            DG+   IW  PW+P+ + + +  +    E    + V EL+S D   WN EL+  LF   +
Sbjct: 937  DGRDTTIWGDPWVPSLERYSIAATEGVSEDDGPQKVCELISND--RWNVELLNTLFQPWE 994

Query: 3319 AESILKIPISQTGRKDRLVWHLEAKGQYSVKSAYNAALSCCKKEAEAPESSENRKKSDIM 3498
            + +I +IP++   + D+ +W +   GQ++V+SAY   L   +K   +     N K    +
Sbjct: 995  STAIQRIPVALQKKPDQWMWMMSKNGQFTVRSAYYHELLEDRKTGPSTSRGPNLK----L 1050

Query: 3499 WSRTWKMHVKGKIKHFLWRSCHHHLATKDQLRLKGISLDPMCCFCGEEEEDLEHIFFNCE 3678
            W + WK  +  K+K F W++ H+ LA    +R +G+++D  C  CGE+EE  EH+ + C+
Sbjct: 1051 WQKIWKAKIPPKVKLFSWKAIHNGLAVYTNMRKRGMNIDGACPRCGEKEETTEHLIWGCD 1110

Query: 3679 RAKIIWKLSPVNWEGLRDFTDSFPKWWMQVCQISRGGCVVDRIQLTTYLLWWLWKSRNSW 3858
             +   W +SP+          SF  W   +    +     +   L   + W +W  RN W
Sbjct: 1111 ESSRAWYISPLRIHTGNIEAGSFRIWVESLLDTHKD---TEWWALFWMICWNIWLGRNKW 1167

Query: 3859 MFXXXXXXXXXXXXLAFEEWKEFDSAKLIPAAQAGLLNPV--MPETESRWVSKGADYFHI 4032
            +F             A     EF+        +    +PV  +   E+ W         +
Sbjct: 1168 VFEKKKLAFQEVVERAVRGVMEFEE-------ECAHTSPVETLNTHENGWSVPPVGMVKL 1220

Query: 4033 AVGAVLSKTGRVGLGGLVSCEDKVFHCAWSSSRDLATNLVDATLMAVREALIKAAQKNWQ 4212
             V A + K   +G+GG+V   +     A         +   A   ++R  L  A +  ++
Sbjct: 1221 NVDAAVFKHVGIGMGGVVRDAEGDVLLATCCGGWAMEDPAMAEACSLRYGLKVAYEAGFR 1280

Query: 4213 KVVVCVDDKSLVCDLRKMNAADVKCSIIVEDIFHLANRLEFCCFEAMDYLCKMSCNRLAI 4392
             +VV +D K L   LR   +       +V+DI +LA++     FE +   C    + LA 
Sbjct: 1281 NLVVEMDCKKLFLQLRGKASDVTPFGRVVDDILYLASKCSNVVFEHVKRHCNKVAHLLAQ 1340

Query: 4393 HAIEGEASQEWLHPIPSWIS 4452
                    + WL   PS +S
Sbjct: 1341 MCKNAMEKRVWLEEYPSEVS 1360



 Score =  206 bits (524), Expect = 5e-50
 Identities = 133/460 (28%), Positives = 214/460 (46%), Gaps = 10/460 (2%)
 Frame = +2

Query: 1265 WNCRGLGGPSTISQFKEAFKHHLPDMCFLSETKKKKCFVATMCRKMKLEDRWMCVDPVG- 1441
            WNCRG+G PS +S  +       P + FLSETK K   + ++ +K+K E   + VD  G 
Sbjct: 7    WNCRGMGSPSALSALRRLLASENPQIVFLSETKLKSYEMESVKKKLKWE-HMVAVDCEGE 65

Query: 1442 ---KSGGIFLCWSPDISIWDCVSSEFCFQVCFTSKGSSEKNWAIFVYASVIKEIRQLQWN 1612
               + GG+ + W  +I +     S     +    +   E  +   +Y    +E +     
Sbjct: 66   CRKRRGGLAMLWRSEIKVQVMSMSSNHIDIVVGEEAQGEWRFT-GIYGYPEEEHKDKTGA 124

Query: 1613 FLRQESVKWGDSWFLGGDFNDILHGYEKNGGKKRTDTSCREFKNFCWSLNCIEIPFQGHS 1792
             L   +      W  GGDFN +L   EK GG          F+N     + +++ F G+ 
Sbjct: 125  LLSALARASRRPWLCGGDFNLMLVASEKKGGDGFNSREADIFRNAMEECHFMDLGFVGYE 184

Query: 1793 FTWANNREGEGFVEERLDRILASPEWISKNTTAMVKHIPMQSSDXXXXXXXXXXXQIV-- 1966
            FTW NNR G+  ++ERLDR +A+  W  K   + V H+P + SD           Q    
Sbjct: 185  FTWTNNRGGDANIQERLDRFVANDLWKIKFPGSFVSHLPKRKSDHVPIVASVKGAQSAAT 244

Query: 1967 ---RKKRFYFDSRWTKVDKTKVVVENAWKIPVFGTPLNQIQGRIKNCRMALLDWNKSNKS 2137
               + KRF F++ W +  ++  VV+  W   + GT       R  N    LL W+K    
Sbjct: 245  RTKKSKRFRFEAMWLREGESDEVVKETW---MRGTDAGINLARTAN---KLLSWSKQKFG 298

Query: 2138 NASTNIADCKGKMEDMMKQGGNRDWVKWRNEKD-KLNRAYQEEEMFWKQKSRTQWLNEGD 2314
            + +  I  C+ +M+ +M+   + D +      D +++   + EE++W Q+SR  W+  GD
Sbjct: 299  HVAKEIRMCQHQMKVLMESEPSEDNIMHMRALDARMDELEKREEVYWHQRSRQDWIKSGD 358

Query: 2315 RNTKFFHACTQQRRRLNCIERLIKQDGNQCGSTDEVIKEVSGFYENLFKSVNPPAVHNIL 2494
            +NTKFFH     R + N + R+  + G      D+V +  + ++ENLF+S N   +  IL
Sbjct: 359  KNTKFFHQKASHREQRNNVRRIRNEAGEWFEDEDDVTECFAHYFENLFQSGNNCEMDPIL 418

Query: 2495 HGIPTSITPEMNECLTKPIDEKEIKTALFDLSPYKAPGMD 2614
            + +   IT E+   L  P   +E+  AL  + P KAPG D
Sbjct: 419  NIVKPQITDELGTQLDAPFRREEVSAALAQMHPNKAPGPD 458


>ref|XP_009114067.1| PREDICTED: putative ribonuclease H protein At1g65750 [Brassica rapa]
          Length = 524

 Score =  236 bits (603), Expect = 1e-63
 Identities = 138/422 (32%), Positives = 202/422 (47%), Gaps = 28/422 (6%)
 Frame = +1

Query: 2683 SSKYLGLPMGIGRSKVDTFKFISSTVQARLRSWKNQFLSPAG------------------ 2808
            + KYLGLP   GR K + F++I + V+A  + W  +FLS  G                  
Sbjct: 13   NGKYLGLPEQFGRKKSEMFQYIINKVKAATQGWNKKFLSHGGKEVLLKAVALAMPIFSMN 72

Query: 2809 ----------DICRFSSKFWWGSQIDGPNKIHWASWDKMAVAKDRGGLGFKDIQKFNDAL 2958
                      +I    +KFWWGS       +HW SW +++V K  GGLGF+D++KFN AL
Sbjct: 73   VFRLPRNICDEINSILAKFWWGS--GDKTGMHWYSWKRVSVPKREGGLGFRDLEKFNQAL 130

Query: 2959 LAKQLWRILTQPNLLMSQVMKGKYFHNRKLVEVEGKGTDSWLWKCWLLARDTLALGVRYQ 3138
            L KQ+WRI+  P  LM++++K +YF +  +     K   S+ WK  +  RD L  G+R+ 
Sbjct: 131  LGKQVWRIIQNPQCLMARIIKARYFPDGNIFTATIKRKSSYAWKSLIYGRDLLKRGMRFI 190

Query: 3139 IGDGKSVNIWESPWIPNKQGFKLHNSHVEGSNVRWVRELMSVDGKGWNSELVRKLFGGTD 3318
            IGDG +VN+W  PW+P     +   S      +  VR  M  DG GWN + +R      D
Sbjct: 191  IGDGSTVNMWADPWLPVHPP-RAPRSRNGTQALESVRNYMLEDGTGWNIDKLRDNVVPED 249

Query: 3319 AESILKIPISQTGRKDRLVWHLEAKGQYSVKSAYNAALSCCKKEAEAPESSENRKKSDIM 3498
             E IL + IS   + D L WH    G Y+VKS Y  +      +   P   +      ++
Sbjct: 250  VEVILSLKISSNAQLDLLGWHYTDDGIYTVKSGYWLSTHLPDNDIIEPIWGD-----PLI 304

Query: 3499 WSRTWKMHVKGKIKHFLWRSCHHHLATKDQLRLKGISLDPMCCFCGEEEEDLEHIFFNCE 3678
              R WKM+   KIKHFLW++    LA    L+ + I+    C  C    E  +H+ F+C 
Sbjct: 305  KQRVWKMNSPPKIKHFLWKTLSRSLAVGSNLKRRHITRYDQCMRCCSAIETEQHMLFDCP 364

Query: 3679 RAKIIWKLSPVNWEGLRDFTDSFPKWWMQVCQISRGGCVVDRIQLTTYLLWWLWKSRNSW 3858
             A+ IW+ S ++   +     +  +        +R   +     L  YLLW +WKSRN  
Sbjct: 365  YAQKIWRASGISSNIINGSYSTLEEKIEACLTCNRSSSLTHIKDLPIYLLWRIWKSRNMM 424

Query: 3859 MF 3864
            MF
Sbjct: 425  MF 426


>ref|XP_008391252.1| PREDICTED: putative ribonuclease H protein At1g65750 [Malus
            domestica]
          Length = 623

 Score =  239 bits (609), Expect = 2e-63
 Identities = 172/580 (29%), Positives = 252/580 (43%), Gaps = 39/580 (6%)
 Frame = +1

Query: 2722 SKVDTFKFISSTVQARLRSWKNQFLSPAG----------------------------DIC 2817
            SK   F  +   ++ARL  W  QFLS AG                            D+ 
Sbjct: 2    SKKVVFAEVREKIEARLAGWSEQFLSHAGKEVLVKAVAMALPNYAMSCFKLPIGVCRDVE 61

Query: 2818 RFSSKFWWGSQIDGPNKIHWASWDKMAVAKDRGGLGFKDIQKFNDALLAKQLWRILTQPN 2997
            R    +WW    D    +HW SWD++   K  GGLGFKDIQ FN A LAK  WRIL  P+
Sbjct: 62   RAIRNYWWRGN-DQKMGVHWISWDRLMRNKKLGGLGFKDIQCFNLAFLAKIGWRILQNPS 120

Query: 2998 LLMSQVMKGKYFHNRKLVEV-EGKGTDSWLWKCWLLARDTLALGVRYQIGDGKSVNIWES 3174
             L++ V++ KYF ++   E  +GK T SW WK    AR  L  G+R+++GDG  +NI   
Sbjct: 121  SLLACVLREKYFPDKTFREAGKGKNT-SWGWKGIFEARRVLQHGIRWRVGDGNQINIRND 179

Query: 3175 PWIPNKQGFKLHNSHVEGSNVRWVRELMSVDGKGWNSELVRKLFGGTDAESILKIPISQT 3354
            PW P    F +     E      V EL+  + + W  E++   F   D + IL IP+S+ 
Sbjct: 180  PWFPKPTTFLVKPR--ECLQETLVSELIEPNSRSWKREVILHGFSSEDTKHILSIPLSKF 237

Query: 3355 GRKDRLVWHLEAKGQYSVKSAYNAALSCC------KKEAEAPESSENRKKSDIMWSRTWK 3516
            G  DRLVWH    G YSVK+ Y  A+S        KK   AP +      S+ +W   W 
Sbjct: 238  GCCDRLVWHHTVDGSYSVKTGYRVAVSLLENGALGKKGRGAPSTHHT---SNQVWKGIWN 294

Query: 3517 MHVKGKIKHFLWRSCHHHLATKDQLRLKGISLDPMCCFCGEEEEDLEHIFFNCERAKIIW 3696
            + V  KIK F+WR C+  LA +  L+ + + +D +C  C   +E   H+FF C+ ++ +W
Sbjct: 295  LQVPNKIKFFIWRCCNKALAVRHNLKRRHMRIDNVCGVCNLVDESENHLFFRCDLSQRLW 354

Query: 3697 KLSPVNWEGLRDFTDSFPKWWMQVCQISRGGCVVDRI-QLTTYLLWWLWKSRNSWMFXXX 3873
              SP++   +      F + W   C   +     + I Q   + LW +WK+RN  +F   
Sbjct: 355  FCSPLHLYSIELIGADFLESWNNFCTSIKDREDAEAILQEFAFGLWRIWKNRNDVVFKGS 414

Query: 3874 XXXXXXXXXLAFEEWKEFDSAKLIPAAQAGLLNPVM--PETESRWVSKGADYFHIAVGAV 4047
                     +  +   E+  A    + +   + P    P+    W       F +   A 
Sbjct: 415  HCQPNEILTVWRKNIGEYREAMNRGSLEECAVRPHQPPPKMPMLWEKPKFGSFKLNTDAA 474

Query: 4048 LSKTG-RVGLGGLVSCEDKVFHCAWSSSRDLATNLVDATLMAVREALIKAAQKNWQKVVV 4224
               T  R G G ++     + H A  S          A   A+R  L       ++ V V
Sbjct: 475  WCCTSYRAGAGWVIRDFAGILHAAGGSGTSTFHCAAAAEAHAIRTGLQFCTDYGFENVFV 534

Query: 4225 CVDDKSLVCDLRKMNAADVKCSIIVEDIFHLANRLEFCCF 4344
              D K+++  + K  A +     I+ DI  LA RL    F
Sbjct: 535  EADAKTVILMINKGIAPNCSFECILGDIEVLAQRLTSVTF 574


>ref|XP_009108245.1| PREDICTED: putative ribonuclease H protein At1g65750 [Brassica rapa]
          Length = 459

 Score =  233 bits (593), Expect = 4e-63
 Identities = 137/423 (32%), Positives = 202/423 (47%), Gaps = 29/423 (6%)
 Frame = +1

Query: 2683 SSKYLGLPMGIGRSKVDTFKFISSTVQARLRSWKNQFLSPAG------------------ 2808
            + KYLGLP   GR K + F++I + V+A  + W  +FLS  G                  
Sbjct: 13   NGKYLGLPEQFGRKKSEMFQYIINKVKAATQGWNKKFLSHGGKEVLLKAVALAMPIFSMN 72

Query: 2809 ----------DICRFSSKFWWGSQIDGPNKIHWASWDKMAVAKDRGGLGFKDIQKFNDAL 2958
                      +I    +KFWWGS +     +HW SW +++V K  GGLGF+D++KFN AL
Sbjct: 73   VFRLPRNICDEINSILAKFWWGSGVK--KGMHWYSWKRVSVPKREGGLGFRDLEKFNQAL 130

Query: 2959 LAKQLWRILTQPNLLMSQVMKGKYFHNRKLVEVEGKGTDSWLWKCWLLARDTLALGVRYQ 3138
            L KQ+WRI+  P  LM++++K +YF +        K   S+ WK  +  RD L  G+R+ 
Sbjct: 131  LGKQVWRIIQNPQCLMARIIKARYFPDGNTFTATIKRKSSYAWKSLIYGRDLLKRGMRFI 190

Query: 3139 IGDGKSVNIWESPWIPNKQGFKLHNSHVEGSNV-RWVRELMSVDGKGWNSELVRKLFGGT 3315
            IGDG +VN+W  PW+         + +  G+ V   VR  M  DG GWN + +R      
Sbjct: 191  IGDGSTVNMWADPWLQVHPPIAPRSRN--GTQVLESVRNYMKEDGTGWNIDKLRDNVVPE 248

Query: 3316 DAESILKIPISQTGRKDRLVWHLEAKGQYSVKSAYNAALSCCKKEAEAPESSENRKKSDI 3495
            D E IL + IS   + D L WH    G Y+VKS Y  +      +   P   +      +
Sbjct: 249  DVEVILSLKISSNAQLDLLGWHYTDDGIYTVKSGYWLSTHLPDNDIIEPIWGD-----PL 303

Query: 3496 MWSRTWKMHVKGKIKHFLWRSCHHHLATKDQLRLKGISLDPMCCFCGEEEEDLEHIFFNC 3675
            +  R WKM+   KIKHFLW++    L     L+ + I+    C  C    E  +H+ F+C
Sbjct: 304  IKQRVWKMNSPPKIKHFLWKTLSRSLVVGSNLKRRHITRYDQCMRCCSAIETEQHMLFDC 363

Query: 3676 ERAKIIWKLSPVNWEGLRDFTDSFPKWWMQVCQISRGGCVVDRIQLTTYLLWWLWKSRNS 3855
              A+ IW+ S ++   +     +  +        +R   +     L  YLLW +WKSRN 
Sbjct: 364  PYAQKIWRASGISSNIINGSYSTLEEKIEACLTCNRSSSLAHIKDLPIYLLWRIWKSRNM 423

Query: 3856 WMF 3864
             MF
Sbjct: 424  MMF 426


>ref|XP_008340321.1| PREDICTED: putative ribonuclease H protein At1g65750 [Malus
            domestica]
          Length = 565

 Score =  236 bits (601), Expect = 5e-63
 Identities = 163/554 (29%), Positives = 252/554 (45%), Gaps = 15/554 (2%)
 Frame = +1

Query: 2809 DICRFSSKFWWGSQIDGPNKIHWASWDKMAVAKDRGGLGFKDIQKFNDALLAKQLWRILT 2988
            D+ R    +WW    +    IHW SWD++   K  GGLGFKDIQ  N A LAK  WR+  
Sbjct: 13   DVERAIRNYWWRGN-EHSKGIHWISWDRLMKQKKAGGLGFKDIQCVNLAFLAKIGWRVTQ 71

Query: 2989 QPNLLMSQVMKGKYFHNRKLVEV-EGKGTDSWLWKCWLLARDTLALGVRYQIGDGKSVNI 3165
             P  L++ V++ KYF  +   E  +GK T SW WK    AR  L LG+R+++G+GKS+NI
Sbjct: 72   NPMSLIASVLRDKYFPGKTFGEAPKGKNT-SWGWKGLFEARKVLNLGLRWRVGNGKSINI 130

Query: 3166 WESPWIPNKQGFKLH-NSHVEGSNVRWVRELMSVDGKGWNSELVRKLFGGTDAESILKIP 3342
             + PW P    FK +  +++ G+    V +L+  D   W ++ +   F   D   IL IP
Sbjct: 131  RKDPWFPKPSTFKAYPTTNLVGT---MVSDLIDPDTNSWRTDSIANGFHRDDVLPILSIP 187

Query: 3343 ISQTGRKDRLVWHLEAKGQYSVKSAYNAALSCCKKEA---EAPESSENRKKSDIMWSRTW 3513
            +S  G  DRLVWH    G Y VKS Y+ AL   ++ A   +   +     K +++W+  W
Sbjct: 188  LSHAGIDDRLVWHYTTNGIYXVKSGYSLALKLMEEXALGRKGXGTPSESNKLNLVWNNIW 247

Query: 3514 KMHVKGKIKHFLWRSCHHHLATKDQLRLKGISLDPMCCFCGEEEEDLEHIFFNCERAKII 3693
            ++ V  KIK F+WR C++ LA +  L+ + + +D +C  C    E   H+FF CE + + 
Sbjct: 248  RLXVPNKIKIFIWRCCNNALAVRRNLKRRHMRVDNVCGVCNAFNETENHLFFRCELSHVF 307

Query: 3694 WKLSPVNWEGLRDFTDSFPKWWMQVCQISRGGCVVDRI-QLTTYLLWWLWKSRNSWMFXX 3870
            W  SP++          F + W   C   +     D I Q   + LW LWK+RN  +F  
Sbjct: 308  WFCSPLHLNSHVLEGSDFLESWSNFCAQVKDXINADDICQDFXFGLWRLWKNRNDVVFKG 367

Query: 3871 XXXXXXXXXXLAFEEWKEFDSA-KLIPAAQAGLLNPVMPETE-------SRWVSKGADYF 4026
                         E W++  S  K   A  A   +  +P+T        ++W        
Sbjct: 368  IHRQPLD----ILEAWRKSTSEYKDSLARNADDFSXRLPKTSKATALNCTKWQKPRFGTI 423

Query: 4027 HIAVGAVLSKTG-RVGLGGLVSCEDKVFHCAWSSSRDLATNLVDATLMAVREALIKAAQK 4203
             I   A   K    +G+G L      +   A  S      +   A   A+R AL+     
Sbjct: 424  KINTDAAWCKDXMXMGVGWLGRDFAGLLQAAGGSGSGFCHSAAAAEASAIRYALLSXXDH 483

Query: 4204 NWQKVVVCVDDKSLVCDLRKMNAADVKCSIIVEDIFHLANRLEFCCFEAMDYLCKMSCNR 4383
             +  +++  D  +++  L+K    D     I+ DI  LA +L    F  +      + + 
Sbjct: 484  GFXDIIIESDASTIIMMLKKEVLVDFSIECILXDIEVLAQKLRSVSFAFVPREGNRAAHS 543

Query: 4384 LAIHAIEGEASQEW 4425
            +A +A +   S  W
Sbjct: 544  VAKYAFKEGRSFSW 557