BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia27_contig00004953
         (2409 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]  1053   0.0  
emb|CAN73567.1| hypothetical protein VITISV_003451 [Vitis vinifera]   984   0.0  
gb|ABA98785.1| retrotransposon protein, putative, Ty1-copia subc...   780   0.0  
gb|AAP50927.1| putative polyprotein [Oryza sativa Japonica Group...   776   0.0  
gb|AAV43959.2| putative polyprotein [Oryza sativa Japonica Group]     777   0.0  
gb|ABA96250.1| retrotransposon protein, putative, Ty1-copia subc...   775   0.0  
dbj|BAC65862.1| hypothetical polyprotein [Oryza sativa Japonica ...   774   0.0  
gb|AAP54028.1| retrotransposon protein, putative, Ty1-copia subc...   775   0.0  
gb|AAP94586.1| putative retrotransposon RIRE1 poly protein [Zea ...   773   0.0  
dbj|BAB03249.1| polyprotein [Oryza sativa]                            770   0.0  
emb|CAH66912.1| OSIGBa0126B18.5 [Oryza sativa Indica Group]           775   0.0  
gb|AAM19019.1|AC084748_9 putative polyprotein [Oryza sativa Japo...   774   0.0  
gb|ABF99156.1| retrotransposon protein, putative, Ty1-copia subc...   774   0.0  
gb|ABA99813.1| retrotransposon protein, putative, Ty1-copia subc...   775   0.0  
gb|ABA98885.1| retrotransposon protein, putative, Ty1-copia subc...   770   0.0  
gb|AAG13538.1|AC023240_11 putative gag-pol polyprotein [Oryza sa...   769   0.0  
gb|AAS07202.1| putative integrase [Oryza sativa Japonica Group] ...   770   0.0  
gb|ABA99473.2| retrotransposon protein, putative, Ty1-copia subc...   764   0.0  
gb|ABA95374.1| retrotransposon protein, putative, Ty1-copia subc...   764   0.0  
gb|AAP54390.2| retrotransposon protein, putative, Ty1-copia subc...   769   0.0  

>emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]
          Length = 1316

 Score = 1053 bits (2723), Expect = 0.0
 Identities = 515/824 (62%), Positives = 645/824 (78%), Gaps = 27/824 (3%)
 Frame = +2

Query: 2    VYCAVKSSKELWDSLEKKYKTEDAGTKKFVVGKFLDFVMVDSKTVMEQVQKFQLILHEIS 181
            VY   K++KELW+SL++KYKTEDAG KKFVVG+FLD+ MVDSKTV+ QVQ+ Q+ILHEI 
Sbjct: 114  VYSDKKTAKELWESLDRKYKTEDAGAKKFVVGRFLDYKMVDSKTVVSQVQELQVILHEIH 173

Query: 182  AEGMALPEAFQVAALIEKLPPSWRDFKNYLKHKRKEMGLEDLIVKLRIEEDNRRIXXXXX 361
            AEGM L E FQVAA+IEKLPP+W+DFKNYLKHKRKEM +EDLI++LRIEEDNRR      
Sbjct: 174  AEGMMLSETFQVAAIIEKLPPAWKDFKNYLKHKRKEMSIEDLIIRLRIEEDNRRSEKKGA 233

Query: 362  XXXSK--------------KRPNDKGKKPAAG---------KFQGACYNCGKPNHMAKDC 472
               ++              K  N+KGK    G         KFQG C+NCGK  H + DC
Sbjct: 234  HTLNEAKANFVEHGQSSKAKTNNNKGKGSKLGPKGGISKKPKFQGKCFNCGKQGHKSVDC 293

Query: 473  RQPKKKKTKPQSNANVVEE--RELTEVDMSAVVFEANLV-DNPKEWFVDTGATCHVCSDK 643
            R PKK K K    ANV+++  + + ++D++AVV E NLV  NPKEW++DTGAT HVCSDK
Sbjct: 294  RLPKKNKPK---EANVIDDITKNVYDIDLTAVVSEVNLVGSNPKEWWIDTGATRHVCSDK 350

Query: 644  DAFSSYIP-STGRKLHMGNHASSDVAGVGTVVLKLTSGKELKLKDVLHVPDIRKNLVSGS 820
              FS++ P   G K+ MGN A+S++ G G V+LK+TSGKEL L +VL+VP+IRKNLVSGS
Sbjct: 351  KMFSTFEPIENGEKVFMGNSATSEIKGQGKVILKMTSGKELTLTNVLYVPEIRKNLVSGS 410

Query: 821  LLVNHGFRLVFESEKFVLSKFGQFLGRGYLDKGLFKMNVMTVRRFGENMNKNESSSVYIA 1000
            LL NHGFRLVF S K VLSK G ++G+GY+  G++K+NVMT+ +   NMNK  S+S Y+ 
Sbjct: 411  LLNNHGFRLVFXSNKVVLSKSGMYVGKGYMSDGMWKLNVMTIIK--SNMNK-ASTSTYML 467

Query: 1001 ECSNLWHIRLGHVNLNAIKRLVNLELINLPEVN*QRKCEVCVEAKMAKLPFHSVERSTSP 1180
            E SNLWH RLGHVN + ++RL+NL  I   ++N   KCE CVEAK+ +  F SVER+T P
Sbjct: 468  ESSNLWHGRLGHVNYDTLRRLINLNHIPTFQINSNHKCETCVEAKLTRSSFQSVERNTEP 527

Query: 1181 LELIHTDVCDLKFVQTKGGKKYFITFIDDCTRFCYLYLLRSKDEALEAFKNYKNEVENQL 1360
            L+LIH+D+CDLKFVQT+GG KYFITF+DD T++CY+YLL+SKDEA+E F  YK EVENQL
Sbjct: 528  LDLIHSDICDLKFVQTRGGNKYFITFVDDSTKYCYVYLLKSKDEAIEKFVLYKTEVENQL 587

Query: 1361 GSRIKIIRSDRGGEYVAPFEELCTQSGIIHQTTAPYSPQSNGVAERKNRTLKEMMNAMLI 1540
              +IK++RSDRGGEY +PF ++C Q GIIH+TTAPYSPQSNGVAERKNRTLKEMMNAMLI
Sbjct: 588  NKKIKVLRSDRGGEYESPFVDICAQHGIIHETTAPYSPQSNGVAERKNRTLKEMMNAMLI 647

Query: 1541 SSGLPQNMWGEAVLTANHILNKIPLKGKDKTPYELWKNRKPSYKYLKVWGCLAKVAIPEP 1720
            SS LPQNMWGEA+LTAN++LNK+P K  +KTPYELWK RKPSY YL++WGCLAKVA+P P
Sbjct: 648  SSSLPQNMWGEAILTANYLLNKVPKKKAEKTPYELWKGRKPSYTYLRMWGCLAKVAVPPP 707

Query: 1721 KQVKIGPKTVDCVFVGYAYQSSAYRFMIHKSENPEMTEGTIIESRNVVFFEDVYPCREKL 1900
            K+VKIGPKT+DC+F+GYA+ S+AYRF++++S  P++ + TI+ESRN  FFEDV+PC+ K 
Sbjct: 708  KKVKIGPKTIDCIFIGYAHNSNAYRFLVYESNIPDIHKNTIMESRNASFFEDVFPCKSKE 767

Query: 1901 EVSTNKRTHETASGSTPISEEPRRSKRSKTAKSFGPDYITFMLDGEPNSIKEALSSPDAP 2080
            E S++KR  E+   +  +  EPRRSKR +T KSFGPD++TFML+GEP + KEA++S +  
Sbjct: 768  EPSSSKRMLESQDQNEEVEVEPRRSKRVRTEKSFGPDFLTFMLEGEPQTFKEAVNSTEGL 827

Query: 2081 LWQEAINSEIESILQNHTWELVDLPAGHKPLGCKWILKKKYKADGTIDKYKARLVAKGFK 2260
            +W+EAI SEI+SILQNHTWELVDLP G KPL  KWI K+K K DG+IDKYKARLV KG++
Sbjct: 828  MWKEAIKSEIDSILQNHTWELVDLPPGCKPLSSKWIFKRKMKVDGSIDKYKARLVIKGYR 887

Query: 2261 QKEGYDFFDTYSPVTRIASIRVLLAIAALHNLEIHQMDVKTAFL 2392
            Q EG D+FDTYSPVTRI SIR++LAIAAL NLEIHQMD+K  ++
Sbjct: 888  QTEGLDYFDTYSPVTRINSIRMVLAIAALRNLEIHQMDMKEIYM 931


>emb|CAN73567.1| hypothetical protein VITISV_003451 [Vitis vinifera]
          Length = 1277

 Score =  984 bits (2545), Expect = 0.0
 Identities = 491/829 (59%), Positives = 612/829 (73%), Gaps = 27/829 (3%)
 Frame = +2

Query: 2    VYCAVKSSKELWDSLEKKYKTEDAGTKKFVVGKFLDFVMVDSKTVMEQVQKFQLILHEIS 181
            VY   K++KELW+SL++KYKTEDAG KKFVVG+FLD+ MVDSKTV+ QVQ+ Q+ILHEI 
Sbjct: 114  VYSDKKTAKELWESLDRKYKTEDAGAKKFVVGRFLDYKMVDSKTVVSQVQELQVILHEIH 173

Query: 182  AEGMALPEAFQVAALIEKLPPSWRDFKNYLKHKRKEMGLEDLIVKLRIEEDNRRIXXXXX 361
            A+GM L E FQVAA+IEKLPP+W+DFKNYLKHKRKEM +EDLI++LRIEEDNRR      
Sbjct: 174  ADGMMLSETFQVAAIIEKLPPAWKDFKNYLKHKRKEMSIEDLIIRLRIEEDNRRSEKKGA 233

Query: 362  XXXSK--------------KRPNDKGKKPAAG---------KFQGACYNCGKPNHMAKDC 472
               ++              K  N+KGK    G         KFQG C+NCGK  H + DC
Sbjct: 234  HTLNEAQANFVEHGQSSKAKTNNNKGKGSKLGPKGGISKKPKFQGKCFNCGKQGHKSVDC 293

Query: 473  RQPKKKKTKPQSNANVVEE--RELTEVDMSAVVFEANLV-DNPKEWFVDTGATCHVCSDK 643
            R PKK K K    ANV++   + ++++D++ VV E NLV  NPKEW++DTGAT HVCSDK
Sbjct: 294  RLPKKNKPK---EANVIDNITKNVSDIDLTTVVSEVNLVGSNPKEWWIDTGATRHVCSDK 350

Query: 644  DAFSSYIP-STGRKLHMGNHASSDVAGVGTVVLKLTSGKELKLKDVLHVPDIRKNLVSGS 820
              FS++ P   G K+ MGN  +S++ G G V+LK+TSGKEL L +VL+VP+IRKNLV GS
Sbjct: 351  KMFSTFEPIENGEKVFMGNSTTSEIKGQGKVILKMTSGKELTLTNVLYVPEIRKNLVFGS 410

Query: 821  LLVNHGFRLVFESEKFVLSKFGQFLGRGYLDKGLFKMNVMTVRRFGENMNKNESSSVYIA 1000
            LL NHGFRLVFES K VLSK G ++G+GY+  G++K+NVMT+ +   NMNK  S+S Y+ 
Sbjct: 411  LLNNHGFRLVFESNKVVLSKSGMYVGKGYMSDGMWKLNVMTIIK--SNMNK-ASTSTYML 467

Query: 1001 ECSNLWHIRLGHVNLNAIKRLVNLELINLPEVN*QRKCEVCVEAKMAKLPFHSVERSTSP 1180
            E SNLWH RL HVN + ++RL+NL  I   ++N   KCE CVEAK+ +  F SVER+T P
Sbjct: 468  ESSNLWHGRLRHVNYDTLRRLINLNHIPTFQINSNHKCETCVEAKLTRSSFQSVERNTEP 527

Query: 1181 LELIHTDVCDLKFVQTKGGKKYFITFIDDCTRFCYLYLLRSKDEALEAFKNYKNEVENQL 1360
            L+LIH+D+CDLKFVQT+GG KYFITF+DD T++CY+YLL+SKDEA+E F  YK EVENQL
Sbjct: 528  LDLIHSDICDLKFVQTRGGNKYFITFVDDSTKYCYVYLLKSKDEAIEKFVLYKTEVENQL 587

Query: 1361 GSRIKIIRSDRGGEYVAPFEELCTQSGIIHQTTAPYSPQSNGVAERKNRTLKEMMNAMLI 1540
              +IK++RSDRGGEY +PF ++C Q GIIH+TT PYSPQSNGVAERKNRTLKEMMNAMLI
Sbjct: 588  NKKIKVLRSDRGGEYESPFVDICAQHGIIHETTTPYSPQSNGVAERKNRTLKEMMNAMLI 647

Query: 1541 SSGLPQNMWGEAVLTANHILNKIPLKGKDKTPYELWKNRKPSYKYLKVWGCLAKVAIPEP 1720
            S  LPQNMWGEA+LTAN++LNK+P K  +KTPYELWK RKPSY YL++WGCLAKVA+P P
Sbjct: 648  SFSLPQNMWGEAILTANYLLNKVPKKKAEKTPYELWKGRKPSYTYLRMWGCLAKVAVPPP 707

Query: 1721 KQVKIGPKTVDCVFVGYAYQSSAYRFMIHKSENPEMTEGTIIESRNVVFFEDVYPCREKL 1900
            K+VKIGPKT+DC+F+GYA+ S+AYRF++++S  P++ + TI+ESRN  FFEDV+PC    
Sbjct: 708  KKVKIGPKTIDCIFIGYAHNSNAYRFLVYESNIPDIHKNTIMESRNASFFEDVFPC---- 763

Query: 1901 EVSTNKRTHETASGSTPISEEPRRSKRSKTAKSFGPDYITFMLDGEPNSIKEALSSPDAP 2080
                                                         EP + KEA++S +  
Sbjct: 764  ---------------------------------------------EPQTFKEAVNSTEGL 778

Query: 2081 LWQEAINSEIESILQNHTWELVDLPAGHKPLGCKWILKKKYKADGTIDKYKARLVAKGFK 2260
            +W+EAI SEI+SILQNHTWELV+LP G KPL  KWI K+K K DG+IDKYKARLV KG++
Sbjct: 779  MWKEAIKSEIDSILQNHTWELVBLPLGCKPLSSKWIFKRKMKVDGSIDKYKARLVIKGYR 838

Query: 2261 QKEGYDFFDTYSPVTRIASIRVLLAIAALHNLEIHQMDVKTAFLNGEID 2407
            Q EG D+FDTYSPVTRI SIR++LAIAAL NLEIHQMDVKTAFLNG++D
Sbjct: 839  QTEGLDYFDTYSPVTRINSIRMVLAIAALRNLEIHQMDVKTAFLNGDLD 887


>gb|ABA98785.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1303

 Score =  780 bits (2013), Expect = 0.0
 Identities = 418/846 (49%), Positives = 548/846 (64%), Gaps = 44/846 (5%)
 Frame = +2

Query: 2    VYCAVKSSKELWDSLEKKYKTEDAGTKKFVVGKFLDFVMVDSKTVMEQVQKFQLILHEIS 181
            VY  + S K++WD+LE K+   DAG++ +V+ +F D+ MVD ++V+EQ  + Q++  E+ 
Sbjct: 191  VYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVVEQAHEIQMLAKELE 250

Query: 182  AEGMALPEAFQVAALIEKLPPSWRDFKNYLKHKRKEMGLEDLIVKLRIEEDNRR------ 343
                 LP+ F    +I KLPPSW DF   LKHKR+E  + DLI  L +EE  R       
Sbjct: 251  NNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDVRGK 310

Query: 344  --IXXXXXXXXSKKRP----NDKGKKP-------------AAGKFQGACYNCGKPNHMAK 466
                        KK P    N+K  KP             + GK +G C+ CGK  H AK
Sbjct: 311  KVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKSKGKAKGDCFVCGKSGHWAK 370

Query: 467  DCRQPKKKKTKPQSNANVVEERELTEVDMSAVVFEANLVDNPKEWFVDTGATCHVCSDKD 646
            DC + K +K     +AN++            ++     V +  +W+VDTGA  HVC+D  
Sbjct: 371  DCPERKDRK-----SANMIISEGGGTSGYGKILPTVLSVFHSPDWWVDTGANIHVCADIS 425

Query: 647  AFSSYIPSTGRKLHMGNHASSDVAGVGTVVLKLTSGKELKLKDVLHVPDIRKNLVSGSLL 826
             FSSY    G  L MGN + + V GVGTV LK TSGK ++LK+V HVP I+KNLVSGSLL
Sbjct: 426  LFSSYQVGRGSSLLMGNESLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLL 485

Query: 827  VNHGFRLVFESEKFVLSKFGQFLGRGYLDKGLFKMNVMTVRRFGENMNKNESSSVYIAEC 1006
               GFRLVFES K V+SK+G F+G+GY   GLF+ ++        +M  N ++  +I+E 
Sbjct: 486  CREGFRLVFESNKCVVSKYGTFVGKGYDSGGLFRFSL-------NDMCNNHNAVNHISEI 538

Query: 1007 --SNLWHIRLGHVNLNAIKRLVNLELINLPEVN*QRKCEVCVEAKMAKLPFHSVE-RSTS 1177
              SN+WH RL HVN   + RL N+ LI    +    KC  CV++K  + P  + E R+ +
Sbjct: 539  DESNVWHSRLCHVNFGCLTRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLA 598

Query: 1178 PLELIHTDVCDLKFVQTKGGKKYFITFIDDCTRFCYLYLLRSKDEALEAFKNYKNEVENQ 1357
            PLEL+H+D+C++  V TKGGKKYF+T IDDCTRFCY+YLL++KDEAL  FK YK EVENQ
Sbjct: 599  PLELVHSDLCEMNGVLTKGGKKYFMTLIDDCTRFCYVYLLKTKDEALHFFKIYKAEVENQ 658

Query: 1358 LGSRIKIIRSDRGGEYVA-PFEELCTQSGIIHQTTAPYSPQSNGVAERKNRTLKEMMNAM 1534
            L  +IK +RSDRGGEY +  F   C + GIIH+ T PYSPQSNGVAERKNRTL EM+NAM
Sbjct: 659  LERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAM 718

Query: 1535 LISSGLPQNMWGEAVLTANHILNKIPLKGKDKTPYELWKNRKPSYKYLKVWGCLAKVAIP 1714
            L ++GL +  WGEAVLTA H+LNKIP+K K+ TP+E W+ +K +  YL+ WGCLAKV +P
Sbjct: 719  LDTAGLSKEWWGEAVLTACHVLNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVP 778

Query: 1715 EPKQVKIGPKTVDCVFVGYAYQSSAYRFMIHKSENPEMTEGTIIESRNVVFFEDVYPCRE 1894
              K+ K+GPKTVDCVF+GYA  S  YRF+I  S  P+M  GTI+ESR+  FFE+ +P + 
Sbjct: 779  IAKKRKLGPKTVDCVFLGYAIHSVGYRFLIVNSGVPDMHVGTILESRDATFFENEFPMKY 838

Query: 1895 KLEVSTNKRT--HE-----TASGSTPISEEP--------RRSKRSKTAKSFGPDYITFML 2029
                S+ +    HE       +  TP  E P        R+SKR + AKSFG DYI +++
Sbjct: 839  TPSTSSKETVMPHEHFAPIEHNDQTP-EENPEEDNIVDTRKSKRQRVAKSFGDDYIVYLV 897

Query: 2030 DGEPNSIKEALSSPDAPLWQEAINSEIESILQNHTWELVDLPAGHKPLGCKWILKKKYKA 2209
            D  P +I+EA SSPDA  W+EA+ SE++SI+ N TWE+V+ P G KP+GCKW+ KKK + 
Sbjct: 898  DDTPRTIEEAYSSPDADYWKEAVRSEMDSIMSNGTWEVVERPYGCKPVGCKWVFKKKLRP 957

Query: 2210 DGTIDKYKARLVAKGFKQKEGYDFFDTYSPVTRIASIRVLLAIAALHNLEIHQMDVKTAF 2389
            DGTI+KYKARLVAKG+ QKEG DFFDTYSPV R+ +IRVLLA+AA H L IHQMDVKTAF
Sbjct: 958  DGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLIHQMDVKTAF 1017

Query: 2390 LNGEID 2407
            LNGE++
Sbjct: 1018 LNGELE 1023


>gb|AAP50927.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108708705|gb|ABF96500.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1240

 Score =  776 bits (2004), Expect = 0.0
 Identities = 417/846 (49%), Positives = 546/846 (64%), Gaps = 44/846 (5%)
 Frame = +2

Query: 2    VYCAVKSSKELWDSLEKKYKTEDAGTKKFVVGKFLDFVMVDSKTVMEQVQKFQLILHEIS 181
            VY  + S K++WD+LE K+   DAG++ +V+ +F D+ MVD ++V+EQ  + Q++  E+ 
Sbjct: 46   VYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVVEQAYEIQMLAKELE 105

Query: 182  AEGMALPEAFQVAALIEKLPPSWRDFKNYLKHKRKEMGLEDLIVKLRIEEDNRR------ 343
                 LP+ F    +I KLPPSW DF   LKHKR+E  + DLI  L +EE  R       
Sbjct: 106  NNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDVRGK 165

Query: 344  --IXXXXXXXXSKKRP----NDKGKKP-------------AAGKFQGACYNCGKPNHMAK 466
                        KK P    N+K  KP               GK +G C+ CGK  H AK
Sbjct: 166  KVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKGKGKAKGDCFVCGKSGHWAK 225

Query: 467  DCRQPKKKKTKPQSNANVVEERELTEVDMSAVVFEANLVDNPKEWFVDTGATCHVCSDKD 646
            DC + K +K     +AN++            ++     V +  +W+VDTGA  HVC+D  
Sbjct: 226  DCPERKDRK-----SANMIISEGGGTSGYGKILPTVLSVFHSPDWWVDTGANIHVCADIS 280

Query: 647  AFSSYIPSTGRKLHMGNHASSDVAGVGTVVLKLTSGKELKLKDVLHVPDIRKNLVSGSLL 826
             FSSY    G  L MGN + + V GVGTV LK TSGK ++LK+V HVP I+KNLVSGSLL
Sbjct: 281  QFSSYQVGRGSSLLMGNGSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLL 340

Query: 827  VNHGFRLVFESEKFVLSKFGQFLGRGYLDKGLFKMNVMTVRRFGENMNKNESSSVYIAEC 1006
               GFRLVFES K V+SK+G F+G+GY   GLF+ ++        +M  N ++  +I+E 
Sbjct: 341  CREGFRLVFESNKCVVSKYGTFVGKGYDSGGLFRFSL-------NDMCNNHNAVNHISEN 393

Query: 1007 --SNLWHIRLGHVNLNAIKRLVNLELINLPEVN*QRKCEVCVEAKMAKLPFHSVE-RSTS 1177
              SN+WH RL HVN   + RL N+ LI    +    KC  CV++K  + P  + E R+ +
Sbjct: 394  DESNVWHSRLCHVNFGCMMRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLA 453

Query: 1178 PLELIHTDVCDLKFVQTKGGKKYFITFIDDCTRFCYLYLLRSKDEALEAFKNYKNEVENQ 1357
            PLEL+H+D+C++  V TKGGKKYF+T IDDCTRFCY+YLL++KDEAL  FK YK EVENQ
Sbjct: 454  PLELVHSDLCEMNGVLTKGGKKYFMTLIDDCTRFCYVYLLKTKDEALHYFKIYKAEVENQ 513

Query: 1358 LGSRIKIIRSDRGGEYVA-PFEELCTQSGIIHQTTAPYSPQSNGVAERKNRTLKEMMNAM 1534
            L  +IK +RSDRGGEY +  F   C + GIIH+ T PYSPQSNGVAERKNRTL EM+NAM
Sbjct: 514  LERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAM 573

Query: 1535 LISSGLPQNMWGEAVLTANHILNKIPLKGKDKTPYELWKNRKPSYKYLKVWGCLAKVAIP 1714
            L ++GL +  WGEAVLTA H+LNKIP+K K+ TP+E W+ +K +  YL+ WGCLAKV +P
Sbjct: 574  LDTAGLSKEWWGEAVLTACHVLNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVP 633

Query: 1715 EPKQVKIGPKTVDCVFVGYAYQSSAYRFMIHKSENPEMTEGTIIESRNVVFFEDVYPCRE 1894
              K+ K+GPKTVDCVF+GYA  S  YRF+I  S  P+M  GTI ESR+  FFE+ +P + 
Sbjct: 634  IVKKRKLGPKTVDCVFLGYAIHSVVYRFLIVNSGVPDMHAGTIFESRDATFFENEFPMKY 693

Query: 1895 KLEVSTNKRT--HE-----TASGSTPISEEP--------RRSKRSKTAKSFGPDYITFML 2029
                S+ +    HE       +  TP  E P        R+SKR + AKSFG DYI +++
Sbjct: 694  TSSTSSKETVMPHEHFAPIEHNDQTP-EENPEEDNIVDTRKSKRQRVAKSFGDDYIVYLV 752

Query: 2030 DGEPNSIKEALSSPDAPLWQEAINSEIESILQNHTWELVDLPAGHKPLGCKWILKKKYKA 2209
            D  P +I+EA SSPDA  W+EA+ SE++SI+ N TWE+V+ P G KP+GCKW+ KKK + 
Sbjct: 753  DDTPRTIEEAYSSPDADYWKEAVRSEMDSIMSNGTWEVVERPYGCKPVGCKWVFKKKLRP 812

Query: 2210 DGTIDKYKARLVAKGFKQKEGYDFFDTYSPVTRIASIRVLLAIAALHNLEIHQMDVKTAF 2389
            DGTI+KYKARLVAKG+ QKEG DFFDTYSPV R+ +IRVLLA+AA H L +HQMDVKTAF
Sbjct: 813  DGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTAF 872

Query: 2390 LNGEID 2407
            LNGE++
Sbjct: 873  LNGELE 878


>gb|AAV43959.2| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1268

 Score =  777 bits (2006), Expect = 0.0
 Identities = 417/846 (49%), Positives = 547/846 (64%), Gaps = 44/846 (5%)
 Frame = +2

Query: 2    VYCAVKSSKELWDSLEKKYKTEDAGTKKFVVGKFLDFVMVDSKTVMEQVQKFQLILHEIS 181
            VY  + S K++WD+LE K+   DAG++ +V+ +F D+ MVD ++V+EQ  + Q++  E+ 
Sbjct: 46   VYMHMPSRKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVVEQAHEIQMLAKELE 105

Query: 182  AEGMALPEAFQVAALIEKLPPSWRDFKNYLKHKRKEMGLEDLIVKLRIEEDNRR------ 343
                 LP+ F    +I KLPPSW DF   LKHKR+E  + DLI  L +EE  R       
Sbjct: 106  NNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDVRGK 165

Query: 344  --IXXXXXXXXSKKRP----NDKGKKP-------------AAGKFQGACYNCGKPNHMAK 466
                        KK P    N+K  KP             + GK +G C+ CGK  H AK
Sbjct: 166  KVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKSKGKAKGDCFVCGKSGHWAK 225

Query: 467  DCRQPKKKKTKPQSNANVVEERELTEVDMSAVVFEANLVDNPKEWFVDTGATCHVCSDKD 646
            DC + K +K     +AN++            ++     V +  +W+VDTGA  HVC+D  
Sbjct: 226  DCPERKDRK-----SANMIISEGGGTSGYGKILPTVLSVFHSPDWWVDTGANIHVCADIS 280

Query: 647  AFSSYIPSTGRKLHMGNHASSDVAGVGTVVLKLTSGKELKLKDVLHVPDIRKNLVSGSLL 826
             FSSY    G  L MGN + + V GVGTV LK TSGK ++LK+V HVP I+KNLVSGSLL
Sbjct: 281  LFSSYQVGRGSSLLMGNGSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLL 340

Query: 827  VNHGFRLVFESEKFVLSKFGQFLGRGYLDKGLFKMNVMTVRRFGENMNKNESSSVYIAEC 1006
               GFRLVFES K V+SK+G F+G+GY   GLF+ ++        +M  N ++  +I+E 
Sbjct: 341  CREGFRLVFESNKCVVSKYGTFVGKGYDSGGLFRFSL-------NDMCNNHNAVNHISEN 393

Query: 1007 --SNLWHIRLGHVNLNAIKRLVNLELINLPEVN*QRKCEVCVEAKMAKLPFHSVE-RSTS 1177
              SN+WH RL HVN   + RL N+ LI    +    KC  CV++K  + P  + E R+ +
Sbjct: 394  DESNVWHSRLCHVNFGCMTRLANMSLIPKFTLVKDSKCHTCVQSKQPRKPHKASEARNLA 453

Query: 1178 PLELIHTDVCDLKFVQTKGGKKYFITFIDDCTRFCYLYLLRSKDEALEAFKNYKNEVENQ 1357
            PLEL+H+D+C++  V TKGGKKYF T IDDCTRFCY+YLL++KDEAL  FK YK EVENQ
Sbjct: 454  PLELVHSDLCEMNGVLTKGGKKYFTTLIDDCTRFCYVYLLKTKDEALHFFKIYKAEVENQ 513

Query: 1358 LGSRIKIIRSDRGGEYVA-PFEELCTQSGIIHQTTAPYSPQSNGVAERKNRTLKEMMNAM 1534
            L  +IK +RSDRGGEY +  F   C + GIIH+ T PYSPQSNGVAERKNRTL EM+NAM
Sbjct: 514  LERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAM 573

Query: 1535 LISSGLPQNMWGEAVLTANHILNKIPLKGKDKTPYELWKNRKPSYKYLKVWGCLAKVAIP 1714
            L ++GL +  WGEAVLTA H+LNKIP+K K+ TP+E W+ +K +  YL+ WGCLAKV +P
Sbjct: 574  LDTAGLSKEWWGEAVLTACHVLNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVP 633

Query: 1715 EPKQVKIGPKTVDCVFVGYAYQSSAYRFMIHKSENPEMTEGTIIESRNVVFFEDVYPCRE 1894
              K+ K+GPKTVDCVF+GYA  S  YRF+I  S  P+M  GTI+ESR+  FFE+ +P + 
Sbjct: 634  IAKKRKLGPKTVDCVFLGYAIHSVGYRFLIVNSGVPDMHVGTILESRDATFFENEFPMKY 693

Query: 1895 KLEVSTNKRT--HE-----TASGSTPISEEP--------RRSKRSKTAKSFGPDYITFML 2029
                S+ +    HE       +  TP  E P        R+SKR + AKSFG DYI +++
Sbjct: 694  TPSTSSKETVMPHEHFAPIEHNDQTP-EENPEEDNIVDTRKSKRQRVAKSFGDDYIVYLV 752

Query: 2030 DGEPNSIKEALSSPDAPLWQEAINSEIESILQNHTWELVDLPAGHKPLGCKWILKKKYKA 2209
            D  P +I+EA SSPDA  W+EA+ SE++SI+ N TWE+V+ P G KP+GCKW+ KKK + 
Sbjct: 753  DDTPRTIEEAYSSPDADYWKEAVRSEMDSIMSNGTWEVVERPYGCKPVGCKWVFKKKLRP 812

Query: 2210 DGTIDKYKARLVAKGFKQKEGYDFFDTYSPVTRIASIRVLLAIAALHNLEIHQMDVKTAF 2389
            DGTI+KYKARLVAKG+ QKEG DFFDTYSPV R+ +IRVLLA+AA H L +HQMDVKTAF
Sbjct: 813  DGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTAF 872

Query: 2390 LNGEID 2407
            LNGE++
Sbjct: 873  LNGELE 878


>gb|ABA96250.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1287

 Score =  775 bits (2001), Expect = 0.0
 Identities = 416/846 (49%), Positives = 546/846 (64%), Gaps = 44/846 (5%)
 Frame = +2

Query: 2    VYCAVKSSKELWDSLEKKYKTEDAGTKKFVVGKFLDFVMVDSKTVMEQVQKFQLILHEIS 181
            VY  + S K++WD+LE K+   DAG++ +V+ +F D+ MVD ++V+EQ  + Q++  E+ 
Sbjct: 191  VYMHMPSRKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVVEQAHEIQMLAKELE 250

Query: 182  AEGMALPEAFQVAALIEKLPPSWRDFKNYLKHKRKEMGLEDLIVKLRIEEDNRR------ 343
                 LP+ F    +I KLPPSW DF   LKHKR+E  + DLI  L +EE  R       
Sbjct: 251  NNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDVRGK 310

Query: 344  --IXXXXXXXXSKKRP----NDKGKKP-------------AAGKFQGACYNCGKPNHMAK 466
                        KK P    N+K  KP             + GK +G C+ CGK  H AK
Sbjct: 311  KVEGGCSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKSKGKAKGDCFVCGKSGHWAK 370

Query: 467  DCRQPKKKKTKPQSNANVVEERELTEVDMSAVVFEANLVDNPKEWFVDTGATCHVCSDKD 646
            DC + K KK     +AN++            ++     V +  +W+VDTGA  HVC+D  
Sbjct: 371  DCPERKDKK-----SANMIISEGGGTSGYGKILPTVLSVFHSPDWWVDTGANIHVCADIS 425

Query: 647  AFSSYIPSTGRKLHMGNHASSDVAGVGTVVLKLTSGKELKLKDVLHVPDIRKNLVSGSLL 826
             FSSY    G  L MGN + + V GVGTV LK TSGK ++LK+V HVP I+KNLVSGSLL
Sbjct: 426  LFSSYQVGRGSSLLMGNGSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLL 485

Query: 827  VNHGFRLVFESEKFVLSKFGQFLGRGYLDKGLFKMNVMTVRRFGENMNKNESSSVYIAEC 1006
               GFRLVFES K V+SK+G F+G+GY   GLF+ ++        +M  N ++  +I+E 
Sbjct: 486  CREGFRLVFESNKCVVSKYGTFVGKGYDSGGLFRFSL-------NDMCNNHNAVNHISEN 538

Query: 1007 --SNLWHIRLGHVNLNAIKRLVNLELINLPEVN*QRKCEVCVEAKMAKLPFHSVE-RSTS 1177
              SN+WH RL HVN   + RL N+ LI    +    KC  CV++K  + P  + E R+ +
Sbjct: 539  DESNVWHSRLCHVNFGCMTRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLA 598

Query: 1178 PLELIHTDVCDLKFVQTKGGKKYFITFIDDCTRFCYLYLLRSKDEALEAFKNYKNEVENQ 1357
            PLEL+H+D+C++  V TKGGKKYF+T IDDCTRFCY+YLL++KDEAL  FK YK EVENQ
Sbjct: 599  PLELVHSDLCEMNGVLTKGGKKYFMTLIDDCTRFCYVYLLKTKDEALHFFKIYKAEVENQ 658

Query: 1358 LGSRIKIIRSDRGGEYVA-PFEELCTQSGIIHQTTAPYSPQSNGVAERKNRTLKEMMNAM 1534
            L  +IK +RSDRGGEY +  F   C + GIIH+ T PYSPQSNGVAERKNRTL EM+NAM
Sbjct: 659  LERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAM 718

Query: 1535 LISSGLPQNMWGEAVLTANHILNKIPLKGKDKTPYELWKNRKPSYKYLKVWGCLAKVAIP 1714
            L ++GL +  WGEAVLTA H+LNKIP+K K+ TP+E W+ +K +  YL+ WGCLAKV +P
Sbjct: 719  LDTAGLSKEWWGEAVLTACHVLNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVP 778

Query: 1715 EPKQVKIGPKTVDCVFVGYAYQSSAYRFMIHKSENPEMTEGTIIESRNVVFFEDVYPCRE 1894
              K+ K+GPKTVDCVF+GYA  S  YRF+I  S  P+M  GTI+ESR+  FFE+ +P + 
Sbjct: 779  IAKKRKLGPKTVDCVFLGYAIHSVGYRFLIVNSGVPDMHVGTILESRDATFFENEFPMKY 838

Query: 1895 KLEVSTNKRT--HE-----TASGSTPISEEP--------RRSKRSKTAKSFGPDYITFML 2029
                S+ +    HE       +  TP  E P        R+SKR + AKSFG DYI +++
Sbjct: 839  TPNTSSKETVMPHEHFALIEHNDQTP-EENPEEDNIVDTRKSKRQRVAKSFGDDYIVYLV 897

Query: 2030 DGEPNSIKEALSSPDAPLWQEAINSEIESILQNHTWELVDLPAGHKPLGCKWILKKKYKA 2209
            D  P +I+EA SSPDA  W+EA+ SE++SI+ N TWE+V+ P G KP+GCKW+ KKK + 
Sbjct: 898  DDTPRTIEEAYSSPDADYWKEAVRSEMDSIMSNGTWEVVERPYGCKPVGCKWVFKKKLRP 957

Query: 2210 DGTIDKYKARLVAKGFKQKEGYDFFDTYSPVTRIASIRVLLAIAALHNLEIHQMDVKTAF 2389
            DGTI+KYK RLVAKG+ QKEG DFFDTYSPV R+ +IRVLLA+A  H L +HQMDVKTAF
Sbjct: 958  DGTIEKYKVRLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLALATSHGLLVHQMDVKTAF 1017

Query: 2390 LNGEID 2407
            LNGE++
Sbjct: 1018 LNGELE 1023


>dbj|BAC65862.1| hypothetical polyprotein [Oryza sativa Japonica Group]
          Length = 1268

 Score =  774 bits (1998), Expect = 0.0
 Identities = 415/844 (49%), Positives = 544/844 (64%), Gaps = 42/844 (4%)
 Frame = +2

Query: 2    VYCAVKSSKELWDSLEKKYKTEDAGTKKFVVGKFLDFVMVDSKTVMEQVQKFQLILHEIS 181
            VY  + S K++WD+LE K+   DAG++ +V+ +F D+ MVD ++V+EQ  + Q+++ E+ 
Sbjct: 46   VYMHIPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVVEQAHEIQMLVKELE 105

Query: 182  AEGMALPEAFQVAALIEKLPPSWRDFKNYLKHKRKEMGLEDLIVKLRIEE-----DNRRI 346
                 LP+ F    +I KLPPSW DF   LKHKR+E  + DLI  L IEE     DNR  
Sbjct: 106  NNHCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVTDLIGSLGIEEKARAKDNRGK 165

Query: 347  XXXXXXXXS---KKRP-----NDKGKKP-------------AAGKFQGACYNCGKPNHMA 463
                    +   KK P     N+K  KP               GK +G C+ CGKP H A
Sbjct: 166  KIEGGSSANLVQKKNPHASHNNNKKVKPDVKPKATTNFKKKGKGKAKGDCFVCGKPGHWA 225

Query: 464  KDCRQPKKKKTKPQSNANVVEERELTEVDMSAVVFEANLVDNPKEWFVDTGATCHVCSDK 643
            KDC + K KK     +AN+V   +   +     +     V +  +W+VDTGA  HVC+D 
Sbjct: 226  KDCPERKDKK-----SANMVISEDGGTLGYGKFLPTVLSVCHSPDWWVDTGANIHVCADI 280

Query: 644  DAFSSYIPSTGRKLHMGNHASSDVAGVGTVVLKLTSGKELKLKDVLHVPDIRKNLVSGSL 823
              FSSY    G  L MGN + + V GVGTV LK TSGK ++LK+V HVP I+KNLVSGSL
Sbjct: 281  SLFSSYQVGRGSSLLMGNGSLAAVHGVGTVDLKFTSGKIVQLKNVQHVPSIKKNLVSGSL 340

Query: 824  LVNHGFRLVFESEKFVLSKFGQFLGRGYLDKGLFKMNVMTVRRFGENMNKNESSSVYIAE 1003
            L   GFRLVFES K V+SK+G F+G+GY   GLF+ ++       +  NK  +      +
Sbjct: 341  LCRDGFRLVFESNKCVVSKYGTFIGKGYDSGGLFRFSL------DDMCNKVVNHVSDDDD 394

Query: 1004 CSNLWHIRLGHVNLNAIKRLVNLELINLPEVN*QRKCEVCVEAKMAKLPFHSVE-RSTSP 1180
             SN+WH RL HVN   + RL N+ LI    +    KC  CV++K  + P  + E R+ +P
Sbjct: 395  ESNVWHSRLCHVNFGCMTRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAP 454

Query: 1181 LELIHTDVCDLKFVQTKGGKKYFITFIDDCTRFCYLYLLRSKDEALEAFKNYKNEVENQL 1360
            LEL+H+D+C++  V TKGGKKYF+T IDDCTRFCY+YLL++KDEAL  FK YK EVENQL
Sbjct: 455  LELVHSDLCEMNGVLTKGGKKYFMTLIDDCTRFCYVYLLKTKDEALHYFKIYKAEVENQL 514

Query: 1361 GSRIKIIRSDRGGEYVA-PFEELCTQSGIIHQTTAPYSPQSNGVAERKNRTLKEMMNAML 1537
              +IK +RSDRGGEY +  F   C + GIIH+ T PYSPQSNGVAERKNRTL EM+NAML
Sbjct: 515  ERKIKRLRSDRGGEYFSNEFTSFCEEYGIIHERTPPYSPQSNGVAERKNRTLTEMVNAML 574

Query: 1538 ISSGLPQNMWGEAVLTANHILNKIPLKGKDKTPYELWKNRKPSYKYLKVWGCLAKVAIPE 1717
             ++GL +  WGEA+LTA H+LN+IP K K+ TP+E W+ +K +  +L+ WGCLAKV +P 
Sbjct: 575  DTAGLSKEWWGEAILTACHVLNRIPTKHKEVTPFEEWERKKLNLSHLRTWGCLAKVNVPI 634

Query: 1718 PKQVKIGPKTVDCVFVGYAYQSSAYRFMIHKSENPEMTEGTIIESRNVVFFEDVYPCREK 1897
             K+ K+GPKTVDCVF+GYA  S  YRF+I  S  P+M  GTI ESR+  FFE+ +P +  
Sbjct: 635  AKKRKLGPKTVDCVFLGYAIHSVGYRFLIVNSGVPDMRVGTITESRDATFFENEFPMKNA 694

Query: 1898 LEVSTNKRTHETASG------STPISEEP--------RRSKRSKTAKSFGPDYITFMLDG 2035
               S+ +                 + E P        R+SKR +TAKSFG DYI +++D 
Sbjct: 695  PSTSSQEPILSPEHFVPIEHIDQTLEENPEEDNIVATRKSKRQRTAKSFGDDYIVYLVDD 754

Query: 2036 EPNSIKEALSSPDAPLWQEAINSEIESILQNHTWELVDLPAGHKPLGCKWILKKKYKADG 2215
             P +I+EA SSPDA  W+EA+ SE++SI+ N TWE+V+ P G KP+GCKW+ KKK + DG
Sbjct: 755  TPRTIEEAYSSPDADYWKEAVRSEMDSIMSNGTWEVVERPYGCKPVGCKWVFKKKLRPDG 814

Query: 2216 TIDKYKARLVAKGFKQKEGYDFFDTYSPVTRIASIRVLLAIAALHNLEIHQMDVKTAFLN 2395
            TI+KYKARLVAKG+ QKEG DFFDTYSPV R+ +IRVLLA+AA H L +HQMDVKTAFLN
Sbjct: 815  TIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTAFLN 874

Query: 2396 GEID 2407
            GE++
Sbjct: 875  GELE 878


>gb|AAP54028.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1361

 Score =  775 bits (2002), Expect = 0.0
 Identities = 414/845 (48%), Positives = 543/845 (64%), Gaps = 43/845 (5%)
 Frame = +2

Query: 2    VYCAVKSSKELWDSLEKKYKTEDAGTKKFVVGKFLDFVMVDSKTVMEQVQKFQLILHEIS 181
            VY  + S K++WD+LE K+   DAG++ +V+ +F D+ MVD ++V+EQ  + Q++  E+ 
Sbjct: 213  VYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVVEQAHEIQMLAKELE 272

Query: 182  AEGMALPEAFQVAALIEKLPPSWRDFKNYLKHKRKEMGLEDLIVKLRIEEDNRR------ 343
                 LP+ F    +I KLPPSW DF   LKHKR+E  + DLI  L +EE  R       
Sbjct: 273  NNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDIRGK 332

Query: 344  --IXXXXXXXXSKKRP----NDKGKKP-------------AAGKFQGACYNCGKPNHMAK 466
                        KK P    N+K  KP               GK +G C+ CGK  H AK
Sbjct: 333  KVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKGKGKAKGDCFVCGKSGHWAK 392

Query: 467  DCRQPKKKKTKPQSNANVVEERELTEVDMSAVVFEANLVDNPKEWFVDTGATCHVCSDKD 646
            DC + K +K     +AN++            ++     V +  +W+VDTG   HVC+D  
Sbjct: 393  DCPERKDRK-----SANMIISEGGGTSGYGKILPTVLSVFHSPDWWVDTGTNIHVCADIS 447

Query: 647  AFSSYIPSTGRKLHMGNHASSDVAGVGTVVLKLTSGKELKLKDVLHVPDIRKNLVSGSLL 826
             FSSY    G  L MGN   + V GVGTV LK TSGK ++LK+V HVP I+KNLVSGSLL
Sbjct: 448  LFSSYQVGRGSSLLMGNGLLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLL 507

Query: 827  VNHGFRLVFESEKFVLSKFGQFLGRGYLDKGLFKMNVMTVRRFGENMNKNESSSVYIAEC 1006
               GFRLVFES K V+SK+G F+G+GY   GLF+ ++        +M  N ++  +I+E 
Sbjct: 508  CREGFRLVFESNKCVVSKYGTFVGKGYDSGGLFRFSL-------NDMCNNHNAVNHISEN 560

Query: 1007 --SNLWHIRLGHVNLNAIKRLVNLELINLPEVN*QRKCEVCVEAKMAKLPFHSVE-RSTS 1177
              SN+WH RL HVN   + RL N+ LI    +    KC  CV++K  + P  + E R+ +
Sbjct: 561  DESNVWHSRLCHVNFGCMTRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLA 620

Query: 1178 PLELIHTDVCDLKFVQTKGGKKYFITFIDDCTRFCYLYLLRSKDEALEAFKNYKNEVENQ 1357
            PLEL+H+D+C++  V TKGGKKYF+T IDDCTRFCY+YLL++KDEAL  FK YK EVENQ
Sbjct: 621  PLELVHSDLCEMNGVLTKGGKKYFMTLIDDCTRFCYVYLLKTKDEALHYFKIYKAEVENQ 680

Query: 1358 LGSRIKIIRSDRGGEYVA-PFEELCTQSGIIHQTTAPYSPQSNGVAERKNRTLKEMMNAM 1534
            L  +IK +RSDRGGEY +  F   C + GIIH+ T PYSPQSNGVAERKNRTL EM+NAM
Sbjct: 681  LERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAM 740

Query: 1535 LISSGLPQNMWGEAVLTANHILNKIPLKGKDKTPYELWKNRKPSYKYLKVWGCLAKVAIP 1714
            L ++GL +  WGEAVLTA H+LNKIP+K K+ TP+E W+ +K +  YL+ WGCLAKV +P
Sbjct: 741  LDTAGLSKEWWGEAVLTACHVLNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVP 800

Query: 1715 EPKQVKIGPKTVDCVFVGYAYQSSAYRFMIHKSENPEMTEGTIIESRNVVFFEDVYPCRE 1894
              K+ K+GPKTVDCVF+GYA  S  YRF+I  S  P+M  GTI ESR+ +FFE+ +P + 
Sbjct: 801  IVKKRKLGPKTVDCVFLGYAIHSVGYRFLIVNSGVPDMHAGTIFESRDAIFFENEFPMKY 860

Query: 1895 KLEVSTNKRT--HETASGSTPISEEP------------RRSKRSKTAKSFGPDYITFMLD 2032
                S+ +    HE  +      E P            R+SKR + AKSFG DYI +++D
Sbjct: 861  TPSTSSKETVMPHEHFAPIEHNDETPEENPEEDNIVDTRKSKRQRVAKSFGDDYIVYLVD 920

Query: 2033 GEPNSIKEALSSPDAPLWQEAINSEIESILQNHTWELVDLPAGHKPLGCKWILKKKYKAD 2212
              P +I+EA SSPDA  W+EA+ SE++SI+ N TWE+V+ P G KP+GCKW+ KKK + D
Sbjct: 921  DTPRTIEEAYSSPDADYWKEAVRSEMDSIMSNGTWEVVERPYGCKPVGCKWVFKKKLRPD 980

Query: 2213 GTIDKYKARLVAKGFKQKEGYDFFDTYSPVTRIASIRVLLAIAALHNLEIHQMDVKTAFL 2392
            GTI+KYKARLVAKG+ QKEG DFFDTYSPV R+ +IRVLLA+AA H L +HQMDVKTAFL
Sbjct: 981  GTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTAFL 1040

Query: 2393 NGEID 2407
            NGE++
Sbjct: 1041 NGELE 1045


>gb|AAP94586.1| putative retrotransposon RIRE1 poly protein [Zea mays]
          Length = 1309

 Score =  773 bits (1995), Expect = 0.0
 Identities = 406/834 (48%), Positives = 547/834 (65%), Gaps = 32/834 (3%)
 Frame = +2

Query: 2    VYCAVKSSKELWDSLEKKYKTEDAGTKKFVVGKFLDFVMVDSKTVMEQVQKFQLILHEIS 181
            VY A  S+K LW  LE ++   D G + F    +L++ MV+ ++VMEQ+Q+ QL++ ++ 
Sbjct: 104  VYSAFTSAKGLWTDLENEFSEVDNGNESFTTENYLNYKMVEGRSVMEQLQEIQLLVRDLV 163

Query: 182  AEGMALPEAFQVAALIEKLPPSWRDFKNYLKHKRKEMGLEDLIVKLRIEEDNRR------ 343
              G  LP++FQV A++ KLPPSWRDF    +H +K+M L +L   + +EE  R       
Sbjct: 164  QYGCVLPDSFQVNAILAKLPPSWRDFVTSRRHMKKQMTLTELSAAINVEERARSSNKPSQ 223

Query: 344  ------IXXXXXXXXSKKRPNDKGK-------KPAAGKFQGACYNCGKPNHMAKDCRQPK 484
                  +         KK+ N   K       K    K    CY CG   H A+ C+  K
Sbjct: 224  QLQAHVVEKGGDRKFQKKKKNSPQKNLNQPKSKKMKKKEDFICYVCGVSGHTARRCKLRK 283

Query: 485  KKKTKPQSNANVVEERELTEVDMSAVVFEANLVDNPKEWFVDTGATCHVCSDKDAFSSYI 664
             K   PQ      +E  +          +A +     +W++D+GAT H+C+D+  FSS+ 
Sbjct: 284  GKGPPPQR-----KEGNVVVNSTPGYALQAFMASPSDDWWMDSGATVHICADRSMFSSFQ 338

Query: 665  PSTGRKLHMGNHASSDVAGVGTVVLKLTSGKELKLKDVLHVPDIRKNLVSGSLLVNHGFR 844
                  + MGN   + V G G V LKLTSGK L LKDVL+VP + +NL+S SLL   G +
Sbjct: 339  GFNSAPVLMGNGVPAAVRGTGQVYLKLTSGKTLVLKDVLYVPSMSRNLISVSLLCRQGLK 398

Query: 845  LVFESEKFVLSKFGQFLGRGYLDKGLFKMNVMTVRRFGENMNKNESSSVYIA----ECSN 1012
            LVFES K VLSKFG F+G+ Y   GLF+++V+         N + S  V +       +N
Sbjct: 399  LVFESNKVVLSKFGTFVGKSYESGGLFRLSVL---------NNHSSYHVNVVCNNDSINN 449

Query: 1013 LWHIRLGHVNLNAIKRLVNLELINLPEVN*QR--KCEVCVEAKMAKLPFHSVE-RSTSPL 1183
            +WH RL HVN  AIKRL ++ LI  PE    +  KC +CV+AK  + PFH+VE RST+PL
Sbjct: 450  IWHSRLCHVNFEAIKRLSDMSLI--PEYKHVKGVKCGICVQAKQPRKPFHTVEGRSTTPL 507

Query: 1184 ELIHTDVCDLKFVQTKGGKKYFITFIDDCTRFCYLYLLRSKDEALEAFKNYKNEVENQLG 1363
            ELIH+D+C++  +  KGGK+YF+T IDD TRFCY+YLLR+KDEALE FK YK EVENQL 
Sbjct: 508  ELIHSDICEMNGIIIKGGKRYFLTLIDDATRFCYIYLLRTKDEALEHFKIYKTEVENQLD 567

Query: 1364 SRIKIIRSDRGGEYVAP-FEELCTQSGIIHQTTAPYSPQSNGVAERKNRTLKEMMNAMLI 1540
             +IK +RSDRGGEY++  F+E C + GIIH+TTAPYSPQSNGVAERKNRT+ ++ NA+L 
Sbjct: 568  KKIKRLRSDRGGEYLSNLFDEYCKECGIIHETTAPYSPQSNGVAERKNRTVCDLANALLQ 627

Query: 1541 SSGLPQNMWGEAVLTANHILNKIPLKGKDKTPYELWKNRKPSYKYLKVWGCLAKVAIPEP 1720
            SSG+P   WGEAVLT  ++LN++P + ++ TPYE +K RKP   +L+ WGCLAKV +P P
Sbjct: 628  SSGMPDIWWGEAVLTVCYVLNRVPPRNREATPYEGFKGRKPDLSHLRTWGCLAKVNVPLP 687

Query: 1721 KQVKIGPKTVDCVFVGYAYQSSAYRFMIHKSENPEMTEGTIIESRNVVFFEDVYPCREKL 1900
            K+ K+GPKTVDCVF+GYA+ S+AYRF++  SE  E+    I+ESR+V FFE ++P R+K 
Sbjct: 688  KKRKLGPKTVDCVFLGYAHNSAAYRFLVVHSETSEIAVNVIMESRDVTFFESIFPMRDKE 747

Query: 1901 EVSTN--KRTHETASG---STPISEEPRRSKRSKTAKSFGPDYITFMLDGEPNSIKEALS 2065
             V+ +   RT+   S     TP   E RRSKR +T KS G DYI +++D EP S+ EA +
Sbjct: 748  VVAPDGPSRTYSLPSSVNDQTP-DLELRRSKRQRTEKSLGDDYIIYLVDEEPRSLTEAYT 806

Query: 2066 SPDAPLWQEAINSEIESILQNHTWELVDLPAGHKPLGCKWILKKKYKADGTIDKYKARLV 2245
            SPDA  W+EA+ SE++SI+ N TWE+ DLPAG KP+GCKWI ++K + DGTI+KYKARLV
Sbjct: 807  SPDAEYWREAVLSEMDSIISNGTWEITDLPAGCKPVGCKWIFRRKRRPDGTIEKYKARLV 866

Query: 2246 AKGFKQKEGYDFFDTYSPVTRIASIRVLLAIAALHNLEIHQMDVKTAFLNGEID 2407
            AKGF QK+  D+FDTYSPV R+ +IRVLLA+AA + L +HQMDVKTAFLNGE++
Sbjct: 867  AKGFTQKKEEDYFDTYSPVARLPTIRVLLALAAAYKLLVHQMDVKTAFLNGELE 920


>dbj|BAB03249.1| polyprotein [Oryza sativa]
          Length = 1268

 Score =  770 bits (1989), Expect = 0.0
 Identities = 415/846 (49%), Positives = 545/846 (64%), Gaps = 44/846 (5%)
 Frame = +2

Query: 2    VYCAVKSSKELWDSLEKKYKTEDAGTKKFVVGKFLDFVMVDSKTVMEQVQKFQLILHEIS 181
            VY  + S K++WD+LE K+   DAG++ +V+ +F D+ MVD ++V+EQ  + Q++  E+ 
Sbjct: 46   VYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVVEQAHEIQMLAKELE 105

Query: 182  AEGMALPEAFQVAALIEKLPPSWRDFKNYLKHKRKEMGLEDLIVKLRIEEDNRR------ 343
                 LP+ F    +I KLPPSW DF   LKHKR+E  + DLI  L +EE  R       
Sbjct: 106  NNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVLDLIGSLGVEEKARAKDVRGK 165

Query: 344  --IXXXXXXXXSKKRP----NDKGKKP-------------AAGKFQGACYNCGKPNHMAK 466
                        KK P    N+K  KP             + GK  G C+ CGK  H AK
Sbjct: 166  KVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKSKGKANGDCFVCGKSGHWAK 225

Query: 467  DCRQPKKKKTKPQSNANVVEERELTEVDMSAVVFEANLVDNPKEWFVDTGATCHVCSDKD 646
            DC + K +K     +AN++            ++     V +  +W+VDTGA  HVC+D  
Sbjct: 226  DCPERKDRK-----SANMIISEGGGTSGYGKILPTVLSVFHSPDWWVDTGANIHVCADIS 280

Query: 647  AFSSYIPSTGRKLHMGNHASSDVAGVGTVVLKLTSGKELKLKDVLHVPDIRKNLVSGSLL 826
             FSSY    G  L MGN + + V GVGTV LK TSGK ++LK+V HVP I+KNLVSGSLL
Sbjct: 281  LFSSYQVGRGSSLLMGNGSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLL 340

Query: 827  VNHGFRLVFESEKFVLSKFGQFLGRGYLDKGLFKMNVMTVRRFGENMNKNESSSVYIAEC 1006
                FRLVFES K V+SK+  F+G+GY   GLF+ ++        +M  N ++  +I+E 
Sbjct: 341  CREDFRLVFESNKCVVSKYETFVGKGYDSGGLFRFSL-------NDMCNNHNAVNHISEN 393

Query: 1007 --SNLWHIRLGHVNLNAIKRLVNLELINLPEVN*QRKCEVCVEAKMAKLPFHSVE-RSTS 1177
              SN+WH RL HVN   + RL N+ LI    +    KC  CV++K  + P  + E R+ +
Sbjct: 394  DESNVWHSRLCHVNFGCMTRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLA 453

Query: 1178 PLELIHTDVCDLKFVQTKGGKKYFITFIDDCTRFCYLYLLRSKDEALEAFKNYKNEVENQ 1357
            PLEL+H+D+C++  V TKGGKKYF+T IDDCTRFCY+YLL++KDEAL  FK YK EVENQ
Sbjct: 454  PLELVHSDLCEMNGVLTKGGKKYFMTLIDDCTRFCYVYLLKTKDEALHFFKIYKAEVENQ 513

Query: 1358 LGSRIKIIRSDRGGEYVA-PFEELCTQSGIIHQTTAPYSPQSNGVAERKNRTLKEMMNAM 1534
            L  +IK +RSDRGGEY +  F   C + GIIH+ T PYSPQSNGVAERKNRTL EM+NAM
Sbjct: 514  LERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAM 573

Query: 1535 LISSGLPQNMWGEAVLTANHILNKIPLKGKDKTPYELWKNRKPSYKYLKVWGCLAKVAIP 1714
            L ++GL +  WGEAVLTA H+LNKIP+K K+ TP+E W+ +K +  YL+ WGCLAKV +P
Sbjct: 574  LDTAGLSKEWWGEAVLTACHVLNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVP 633

Query: 1715 EPKQVKIGPKTVDCVFVGYAYQSSAYRFMIHKSENPEMTEGTIIESRNVVFFEDVYPCRE 1894
              K+ K+GPKTVDCVF+GYA  S  YRF+I  S  P+M  GTI+ESR+  FFE+ +P + 
Sbjct: 634  IAKKRKLGPKTVDCVFLGYAIHSVGYRFLIVNSGVPDMHVGTILESRDATFFENEFPMKY 693

Query: 1895 KLEVSTNKRT--HE-----TASGSTPISEEP--------RRSKRSKTAKSFGPDYITFML 2029
                S+ +    HE       +  TP  E P        R+SKR + AKSFG DYI +++
Sbjct: 694  TPSTSSKETVMPHEYFAPIEHNDQTP-EENPEEDNIVDTRKSKRQRVAKSFGDDYIVYLV 752

Query: 2030 DGEPNSIKEALSSPDAPLWQEAINSEIESILQNHTWELVDLPAGHKPLGCKWILKKKYKA 2209
            D  P +I+EA SSPDA  W+EA+ SE++SI+ N TWE+V+ P G KP+GCKW+ KKK + 
Sbjct: 753  DDTPRTIEEAYSSPDADYWKEAVRSEMDSIMSNGTWEVVERPYGCKPVGCKWVFKKKLRP 812

Query: 2210 DGTIDKYKARLVAKGFKQKEGYDFFDTYSPVTRIASIRVLLAIAALHNLEIHQMDVKTAF 2389
            DGTI+KYKARLVAKG+ QKEG DFFDTYSPV R+ +IRVLLA+AA H L +HQMDVKTAF
Sbjct: 813  DGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTAF 872

Query: 2390 LNGEID 2407
            LNGE++
Sbjct: 873  LNGELE 878


>emb|CAH66912.1| OSIGBa0126B18.5 [Oryza sativa Indica Group]
          Length = 1413

 Score =  775 bits (2000), Expect = 0.0
 Identities = 416/846 (49%), Positives = 547/846 (64%), Gaps = 44/846 (5%)
 Frame = +2

Query: 2    VYCAVKSSKELWDSLEKKYKTEDAGTKKFVVGKFLDFVMVDSKTVMEQVQKFQLILHEIS 181
            VY  + S K++WD+LE K+   DAG++ +V+ +F D+ MVD ++V+EQ  + Q++  E+ 
Sbjct: 191  VYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVVEQAHEIQMLAKELE 250

Query: 182  AEGMALPEAFQVAALIEKLPPSWRDFKNYLKHKRKEMGLEDLIVKLRIEEDNRR------ 343
                 LP+ F    +I KLPPSW DF   LKHKR+E  + DLI  L +EE  R       
Sbjct: 251  NNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDVRGK 310

Query: 344  --IXXXXXXXXSKKRP----NDKGKKP-------------AAGKFQGACYNCGKPNHMAK 466
                        KK P    N+K  KP             + GK +G C+ CGK  H AK
Sbjct: 311  KVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKSKGKAKGDCFVCGKSGHWAK 370

Query: 467  DCRQPKKKKTKPQSNANVVEERELTEVDMSAVVFEANLVDNPKEWFVDTGATCHVCSDKD 646
            DC + K +K     +AN++            ++     V +  +W+VDTGA  HVC+D  
Sbjct: 371  DCPERKDRK-----SANMIISEGGGTSGYGKILPTVLSVFHSPDWWVDTGANIHVCADIS 425

Query: 647  AFSSYIPSTGRKLHMGNHASSDVAGVGTVVLKLTSGKELKLKDVLHVPDIRKNLVSGSLL 826
             FSSY    G  L MGN + + V GVGTV LK TSGK ++LK+V HVP I+KNLVSGSLL
Sbjct: 426  LFSSYQVGRGFSLLMGNGSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLL 485

Query: 827  VNHGFRLVFESEKFVLSKFGQFLGRGYLDKGLFKMNVMTVRRFGENMNKNESSSVYIAEC 1006
               GFRLVFES K V+SK+G F+G+GY   GLF+ ++        +M  N ++  +I+E 
Sbjct: 486  CREGFRLVFESNKCVVSKYGTFVGKGYDSGGLFRFSL-------NDMCNNHNAVNHISEN 538

Query: 1007 --SNLWHIRLGHVNLNAIKRLVNLELINLPEVN*QRKCEVCVEAKMAKLPFHSVE-RSTS 1177
              SN+WH RL HVN   + RL N+ LI    +    KC  CV++K  + P  + E R+ +
Sbjct: 539  DESNVWHSRLCHVNFGCMTRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLA 598

Query: 1178 PLELIHTDVCDLKFVQTKGGKKYFITFIDDCTRFCYLYLLRSKDEALEAFKNYKNEVENQ 1357
            PLEL+H+D+C++  V TKGGKKYF+T IDDCTRFCY+YLL++KDEAL  FK YK EVENQ
Sbjct: 599  PLELVHSDLCEMNGVLTKGGKKYFMTLIDDCTRFCYVYLLKTKDEALHFFKIYKAEVENQ 658

Query: 1358 LGSRIKIIRSDRGGEYVA-PFEELCTQSGIIHQTTAPYSPQSNGVAERKNRTLKEMMNAM 1534
            L  +IK +RSDRGGEY +  F   C + GIIH+ T PYSPQSNG+AERKNRTL EM+NAM
Sbjct: 659  LERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEMTPPYSPQSNGMAERKNRTLTEMVNAM 718

Query: 1535 LISSGLPQNMWGEAVLTANHILNKIPLKGKDKTPYELWKNRKPSYKYLKVWGCLAKVAIP 1714
            L ++GL +  WGEAVLTA H+LNKIP+K K+ TP+E W+ +K +  YL+ WGCLAKV +P
Sbjct: 719  LDTAGLSKEWWGEAVLTACHVLNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVP 778

Query: 1715 EPKQVKIGPKTVDCVFVGYAYQSSAYRFMIHKSENPEMTEGTIIESRNVVFFEDVYPCRE 1894
              K+ K+GPKTVDCVF+GYA  S  YRF+I  S  P M  GTI+ESR+  FFE+ +P + 
Sbjct: 779  IAKKRKLGPKTVDCVFLGYAIHSVGYRFLIVNSGVPNMHVGTILESRDATFFENEFPMKY 838

Query: 1895 KLEVSTNKRT--HE-----TASGSTPISEEP--------RRSKRSKTAKSFGPDYITFML 2029
                S+ +    HE       +  TP  E P        R+SKR + AKSFG DYI +++
Sbjct: 839  TPSTSSKETVMPHEHFAPIEHNDQTP-EENPEEDNIVDTRKSKRQRVAKSFGDDYIVYLV 897

Query: 2030 DGEPNSIKEALSSPDAPLWQEAINSEIESILQNHTWELVDLPAGHKPLGCKWILKKKYKA 2209
            D  P +I+EA SSPDA  W+EA+ SE++SI+ N TWE+V+ P G KP+GCKW+ KKK + 
Sbjct: 898  DDTPRTIEEAYSSPDADYWKEAVRSEMDSIMSNGTWEVVERPYGCKPVGCKWVFKKKLRP 957

Query: 2210 DGTIDKYKARLVAKGFKQKEGYDFFDTYSPVTRIASIRVLLAIAALHNLEIHQMDVKTAF 2389
            DGTI+KYKARLVAKG+ QKEG DFFDTYSPV R+ +IRVLLA+AA H L +HQMDVKTAF
Sbjct: 958  DGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTAF 1017

Query: 2390 LNGEID 2407
            LNGE++
Sbjct: 1018 LNGELE 1023


>gb|AAM19019.1|AC084748_9 putative polyprotein [Oryza sativa Japonica Group]
          Length = 1394

 Score =  774 bits (1998), Expect = 0.0
 Identities = 414/846 (48%), Positives = 543/846 (64%), Gaps = 44/846 (5%)
 Frame = +2

Query: 2    VYCAVKSSKELWDSLEKKYKTEDAGTKKFVVGKFLDFVMVDSKTVMEQVQKFQLILHEIS 181
            VY  + S K++WD+LE K+   DAG++ +V+ +F D+ MVD ++V+EQ  + Q++  E+ 
Sbjct: 172  VYMHMPSGKDMWDALEAKFGISDAGSELYVMEQFYDYKMVDDRSVVEQAHEIQMLAKELE 231

Query: 182  AEGMALPEAFQVAALIEKLPPSWRDFKNYLKHKRKEMGLEDLIVKLRIEEDNRR------ 343
                 LP+ F    +I KLPPSW DF   LKHKR+E  + DLI  L +EE  R       
Sbjct: 232  NNNCELPDKFVAGDIIAKLPPSWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDVRGK 291

Query: 344  --IXXXXXXXXSKKRP----NDKGKKP-------------AAGKFQGACYNCGKPNHMAK 466
                        KK P    N+K  KP             + GK +G C+ CGK  H AK
Sbjct: 292  KVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKSKGKAKGDCFVCGKSGHWAK 351

Query: 467  DCRQPKKKKTKPQSNANVVEERELTEVDMSAVVFEANLVDNPKEWFVDTGATCHVCSDKD 646
            DC + K +K     +AN++            ++     V +  +W+VDTGA  HVC+D  
Sbjct: 352  DCPERKDRK-----SANMIISEGGGTSGYGKILPRVLSVFHSPDWWVDTGANIHVCADIS 406

Query: 647  AFSSYIPSTGRKLHMGNHASSDVAGVGTVVLKLTSGKELKLKDVLHVPDIRKNLVSGSLL 826
             FSSY    G  L MGN + + V GVGTV LK TSGK ++LK+V HVP I+KNLVSGSLL
Sbjct: 407  LFSSYQVGRGSSLLMGNGSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLL 466

Query: 827  VNHGFRLVFESEKFVLSKFGQFLGRGYLDKGLFKMNVMTVRRFGENMNKNESSSVYIAEC 1006
               GFRLVFES K V+SK+G F+G+GY   GLF+ ++        +M  N +   +I+E 
Sbjct: 467  CREGFRLVFESNKCVVSKYGTFVGKGYDSGGLFRFSL-------NDMCNNHNVVNHISEN 519

Query: 1007 --SNLWHIRLGHVNLNAIKRLVNLELINLPEVN*QRKCEVCVEAKMAKLPFHSVE-RSTS 1177
              SN+WH RL HVN   + RL N+ LI    +    KC  CV++K  + P  + E R+ +
Sbjct: 520  DESNVWHSRLCHVNFGCMTRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLA 579

Query: 1178 PLELIHTDVCDLKFVQTKGGKKYFITFIDDCTRFCYLYLLRSKDEALEAFKNYKNEVENQ 1357
            PLEL+H+D+C++  V TKGGKKYF+T IDDCTRFCY+YLL++KDEAL  FK YK EVENQ
Sbjct: 580  PLELVHSDLCEMNGVLTKGGKKYFMTLIDDCTRFCYVYLLKTKDEALHFFKIYKAEVENQ 639

Query: 1358 LGSRIKIIRSDRGGEYVA-PFEELCTQSGIIHQTTAPYSPQSNGVAERKNRTLKEMMNAM 1534
            L  +IK +RSDRGGEY +  F   C + GIIH+ T PYSPQSNGVAERKNRTL EM+NAM
Sbjct: 640  LERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAM 699

Query: 1535 LISSGLPQNMWGEAVLTANHILNKIPLKGKDKTPYELWKNRKPSYKYLKVWGCLAKVAIP 1714
            L ++GL +  WGE VLTA H+LNKIP+K K+ TP+E W+ +K +  YL+ WGCLAKV +P
Sbjct: 700  LDTAGLSKEWWGETVLTACHVLNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVP 759

Query: 1715 EPKQVKIGPKTVDCVFVGYAYQSSAYRFMIHKSENPEMTEGTIIESRNVVFFEDVYPCRE 1894
              K+ K+GPKTVDCVF+GYA  S  YRF+I  S  P+M  GTI+ESR+  FFE+ +P + 
Sbjct: 760  IAKKRKLGPKTVDCVFLGYAIHSVGYRFLIVNSGVPDMHVGTILESRDATFFENEFPMKY 819

Query: 1895 KLEVSTNKRTHETASGSTPISE---------------EPRRSKRSKTAKSFGPDYITFML 2029
                S +K T       TPI                 + R+SKR +  KSFG DYI +++
Sbjct: 820  TPSTS-SKETVMPHEHFTPIEHNDQTPEENPEEDNIVDTRKSKRQRVVKSFGDDYIVYLV 878

Query: 2030 DGEPNSIKEALSSPDAPLWQEAINSEIESILQNHTWELVDLPAGHKPLGCKWILKKKYKA 2209
            D  P +I+EA SSPDA  W+EA+ SE++SI+ N TWE+V+ P G KP+GCKW+ KKK + 
Sbjct: 879  DDTPRTIEEAYSSPDADYWKEAVRSEMDSIMSNGTWEIVERPYGCKPVGCKWVFKKKLRP 938

Query: 2210 DGTIDKYKARLVAKGFKQKEGYDFFDTYSPVTRIASIRVLLAIAALHNLEIHQMDVKTAF 2389
            DGTI+KYKARLVAKG+ QKEG DFFDTYSPV R+ +IRVLLA+AA H L +HQMDVKTAF
Sbjct: 939  DGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTAF 998

Query: 2390 LNGEID 2407
            LNGE++
Sbjct: 999  LNGELE 1004


>gb|ABF99156.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1413

 Score =  774 bits (1998), Expect = 0.0
 Identities = 414/846 (48%), Positives = 543/846 (64%), Gaps = 44/846 (5%)
 Frame = +2

Query: 2    VYCAVKSSKELWDSLEKKYKTEDAGTKKFVVGKFLDFVMVDSKTVMEQVQKFQLILHEIS 181
            VY  + S K++WD+LE K+   DAG++ +V+ +F D+ MVD ++V+EQ  + Q++  E+ 
Sbjct: 191  VYMHMPSGKDMWDALEAKFGISDAGSELYVMEQFYDYKMVDDRSVVEQAHEIQMLAKELE 250

Query: 182  AEGMALPEAFQVAALIEKLPPSWRDFKNYLKHKRKEMGLEDLIVKLRIEEDNRR------ 343
                 LP+ F    +I KLPPSW DF   LKHKR+E  + DLI  L +EE  R       
Sbjct: 251  NNNCELPDKFVAGDIIAKLPPSWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDVRGK 310

Query: 344  --IXXXXXXXXSKKRP----NDKGKKP-------------AAGKFQGACYNCGKPNHMAK 466
                        KK P    N+K  KP             + GK +G C+ CGK  H AK
Sbjct: 311  KVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKSKGKAKGDCFVCGKSGHWAK 370

Query: 467  DCRQPKKKKTKPQSNANVVEERELTEVDMSAVVFEANLVDNPKEWFVDTGATCHVCSDKD 646
            DC + K +K     +AN++            ++     V +  +W+VDTGA  HVC+D  
Sbjct: 371  DCPERKDRK-----SANMIISEGGGTSGYGKILPRVLSVFHSPDWWVDTGANIHVCADIS 425

Query: 647  AFSSYIPSTGRKLHMGNHASSDVAGVGTVVLKLTSGKELKLKDVLHVPDIRKNLVSGSLL 826
             FSSY    G  L MGN + + V GVGTV LK TSGK ++LK+V HVP I+KNLVSGSLL
Sbjct: 426  LFSSYQVGRGSSLLMGNGSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLL 485

Query: 827  VNHGFRLVFESEKFVLSKFGQFLGRGYLDKGLFKMNVMTVRRFGENMNKNESSSVYIAEC 1006
               GFRLVFES K V+SK+G F+G+GY   GLF+ ++        +M  N +   +I+E 
Sbjct: 486  CREGFRLVFESNKCVVSKYGTFVGKGYDSGGLFRFSL-------NDMCNNHNVVNHISEN 538

Query: 1007 --SNLWHIRLGHVNLNAIKRLVNLELINLPEVN*QRKCEVCVEAKMAKLPFHSVE-RSTS 1177
              SN+WH RL HVN   + RL N+ LI    +    KC  CV++K  + P  + E R+ +
Sbjct: 539  DESNVWHSRLCHVNFGCMTRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLA 598

Query: 1178 PLELIHTDVCDLKFVQTKGGKKYFITFIDDCTRFCYLYLLRSKDEALEAFKNYKNEVENQ 1357
            PLEL+H+D+C++  V TKGGKKYF+T IDDCTRFCY+YLL++KDEAL  FK YK EVENQ
Sbjct: 599  PLELVHSDLCEMNGVLTKGGKKYFMTLIDDCTRFCYVYLLKTKDEALHFFKIYKAEVENQ 658

Query: 1358 LGSRIKIIRSDRGGEYVA-PFEELCTQSGIIHQTTAPYSPQSNGVAERKNRTLKEMMNAM 1534
            L  +IK +RSDRGGEY +  F   C + GIIH+ T PYSPQSNGVAERKNRTL EM+NAM
Sbjct: 659  LERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAM 718

Query: 1535 LISSGLPQNMWGEAVLTANHILNKIPLKGKDKTPYELWKNRKPSYKYLKVWGCLAKVAIP 1714
            L ++GL +  WGE VLTA H+LNKIP+K K+ TP+E W+ +K +  YL+ WGCLAKV +P
Sbjct: 719  LDTAGLSKEWWGETVLTACHVLNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVP 778

Query: 1715 EPKQVKIGPKTVDCVFVGYAYQSSAYRFMIHKSENPEMTEGTIIESRNVVFFEDVYPCRE 1894
              K+ K+GPKTVDCVF+GYA  S  YRF+I  S  P+M  GTI+ESR+  FFE+ +P + 
Sbjct: 779  IAKKRKLGPKTVDCVFLGYAIHSVGYRFLIVNSGVPDMHVGTILESRDATFFENEFPMKY 838

Query: 1895 KLEVSTNKRTHETASGSTPISE---------------EPRRSKRSKTAKSFGPDYITFML 2029
                S +K T       TPI                 + R+SKR +  KSFG DYI +++
Sbjct: 839  TPSTS-SKETVMPHEHFTPIEHNDQTPEENPEEDNIVDTRKSKRQRVVKSFGDDYIVYLV 897

Query: 2030 DGEPNSIKEALSSPDAPLWQEAINSEIESILQNHTWELVDLPAGHKPLGCKWILKKKYKA 2209
            D  P +I+EA SSPDA  W+EA+ SE++SI+ N TWE+V+ P G KP+GCKW+ KKK + 
Sbjct: 898  DDTPRTIEEAYSSPDADYWKEAVRSEMDSIMSNGTWEIVERPYGCKPVGCKWVFKKKLRP 957

Query: 2210 DGTIDKYKARLVAKGFKQKEGYDFFDTYSPVTRIASIRVLLAIAALHNLEIHQMDVKTAF 2389
            DGTI+KYKARLVAKG+ QKEG DFFDTYSPV R+ +IRVLLA+AA H L +HQMDVKTAF
Sbjct: 958  DGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTAF 1017

Query: 2390 LNGEID 2407
            LNGE++
Sbjct: 1018 LNGELE 1023


>gb|ABA99813.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1448

 Score =  775 bits (2000), Expect = 0.0
 Identities = 417/846 (49%), Positives = 547/846 (64%), Gaps = 44/846 (5%)
 Frame = +2

Query: 2    VYCAVKSSKELWDSLEKKYKTEDAGTKKFVVGKFLDFVMVDSKTVMEQVQKFQLILHEIS 181
            VY  + S K++WD+LE K+   DAG++ +V+ +F D+ MVD+++V+EQ  + Q++  E+ 
Sbjct: 226  VYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDNRSVVEQAHEIQMLAKELE 285

Query: 182  AEGMALPEAFQVAALIEKLPPSWRDFKNYLKHKRKEMGLEDLIVKLRIEEDNRR------ 343
                 LP+ F    +I KLPPSW DF   LKHKR+E  + DLI  L +EE  R       
Sbjct: 286  NNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVSDLIGSLGVEEKARAKDVRGK 345

Query: 344  --IXXXXXXXXSKKRP----NDKGKKP-------------AAGKFQGACYNCGKPNHMAK 466
                        KK P    N+K  KP               GK +G C+ CGK  H AK
Sbjct: 346  KVEGCSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKGKGKAKGDCFVCGKSGHWAK 405

Query: 467  DCRQPKKKKTKPQSNANVVEERELTEVDMSAVVFEANLVDNPKEWFVDTGATCHVCSDKD 646
            DC + K +K     +AN+V            ++     V +  +W+VDTGA  HVC+D  
Sbjct: 406  DCPERKDRK-----SANMVISEGGGTSGYGKILPTVLSVFHSPDWWVDTGANIHVCADIS 460

Query: 647  AFSSYIPSTGRKLHMGNHASSDVAGVGTVVLKLTSGKELKLKDVLHVPDIRKNLVSGSLL 826
             FSSY    G  L MGN + + V GVGTV LK TSGK ++LK+V HVP I+KNLVSGSLL
Sbjct: 461  LFSSYQVGRGSSLLMGNGSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLL 520

Query: 827  VNHGFRLVFESEKFVLSKFGQFLGRGYLDKGLFKMNVMTVRRFGENMNKNESSSVYIAEC 1006
               GFRLVFES K V+SK+G F+G+GY   GLF+ ++        +M  N ++  +I+E 
Sbjct: 521  CREGFRLVFESNKCVVSKYGTFVGKGYDSGGLFRFSL-------NDMCNNHNAVNHISEN 573

Query: 1007 --SNLWHIRLGHVNLNAIKRLVNLELINLPEVN*QRKCEVCVEAKMAKLPFHSVE-RSTS 1177
              SN+WH RL HVN   + RL N+ LI    +    KC  CV++K  + P  + E R+ +
Sbjct: 574  DESNVWHSRLCHVNFGCMTRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLA 633

Query: 1178 PLELIHTDVCDLKFVQTKGGKKYFITFIDDCTRFCYLYLLRSKDEALEAFKNYKNEVENQ 1357
            PLEL+H+D+C++  V TKGGKKYF+T IDDCTRFCY+YLL++KDEAL  FK YK EVENQ
Sbjct: 634  PLELVHSDLCEMNGVLTKGGKKYFMTLIDDCTRFCYVYLLKTKDEALHYFKIYKAEVENQ 693

Query: 1358 LGSRIKIIRSDRGGEYVA-PFEELCTQSGIIHQTTAPYSPQSNGVAERKNRTLKEMMNAM 1534
            L  +IK +RSDRGGEY +  F   C + GIIH+ T PYSPQSNGVAERKNRTL EM+NAM
Sbjct: 694  LERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAM 753

Query: 1535 LISSGLPQNMWGEAVLTANHILNKIPLKGKDKTPYELWKNRKPSYKYLKVWGCLAKVAIP 1714
            L ++GL +  WGEAVLTA H+LNKIP+K K+ TP+E W+ +K +  YL+ WGCLAKV +P
Sbjct: 754  LDTAGLSKEWWGEAVLTACHVLNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVP 813

Query: 1715 EPKQVKIGPKTVDCVFVGYAYQSSAYRFMIHKSENPEMTEGTIIESRNVVFFEDVYPCRE 1894
              K+ K+GPKTVDCVF+GYA  S  YRF+I  S  P+M  GTI+ESR+  FFE+ +P + 
Sbjct: 814  IAKKWKLGPKTVDCVFLGYAIHSVGYRFLIVNSGVPDMHAGTILESRDATFFENEFPMKY 873

Query: 1895 KLEVSTNKRT--HE-----TASGSTPISEEP--------RRSKRSKTAKSFGPDYITFML 2029
                S+ +    HE       +  TP  E P        R+SKR + AKSFG DYI +++
Sbjct: 874  TPSTSSKETVMPHEHFAPIEHNDQTP-EENPEEDNIVDTRKSKRQRVAKSFGDDYIVYLV 932

Query: 2030 DGEPNSIKEALSSPDAPLWQEAINSEIESILQNHTWELVDLPAGHKPLGCKWILKKKYKA 2209
            D  P +I+EA SS DA  W+EA+ SE++SI+ N TWE+V+ P G KP+GCKW+ KKK + 
Sbjct: 933  DDTPRTIEEAYSSLDADYWKEAVRSEMDSIMSNGTWEVVERPYGCKPVGCKWVFKKKLRP 992

Query: 2210 DGTIDKYKARLVAKGFKQKEGYDFFDTYSPVTRIASIRVLLAIAALHNLEIHQMDVKTAF 2389
            DGTI+KYKARLVAKG+ QKEG DFFDTYSPV R+ +IRVLLA+AA H L +HQMDVKTAF
Sbjct: 993  DGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTAF 1052

Query: 2390 LNGEID 2407
            LNGE++
Sbjct: 1053 LNGELE 1058


>gb|ABA98885.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1452

 Score =  770 bits (1989), Expect = 0.0
 Identities = 415/846 (49%), Positives = 544/846 (64%), Gaps = 44/846 (5%)
 Frame = +2

Query: 2    VYCAVKSSKELWDSLEKKYKTEDAGTKKFVVGKFLDFVMVDSKTVMEQVQKFQLILHEIS 181
            VY  + S K++WD+LE K+   DAG++ +V+ +F D+ MVD ++V+EQ  + Q++  E+ 
Sbjct: 234  VYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVVEQAHEIQMLAKELE 293

Query: 182  AEGMALPEAFQVAALIEKLPPSWRDFKNYLKHKRKEMGLEDLIVKLRIEEDNRR------ 343
                 LP+ F    +I KLPPSW DF   LKHKR+E  + DLI  L +EE  R       
Sbjct: 294  NNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDVRGK 353

Query: 344  --IXXXXXXXXSKKRP----NDKGKKP-------------AAGKFQGACYNCGKPNHMAK 466
                        KK P    N+K  KP               GK +G C+ CGK  H AK
Sbjct: 354  KVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKGKGKAKGDCFVCGKSGHWAK 413

Query: 467  DCRQPKKKKTKPQSNANVVEERELTEVDMSAVVFEANLVDNPKEWFVDTGATCHVCSDKD 646
            DC + K +K     +AN++            ++     V +  +W+VDTGA  HVC+D  
Sbjct: 414  DCPERKDRK-----SANMIISEGGGTSGYGKILPTVLSVFHSPDWWVDTGANIHVCADIS 468

Query: 647  AFSSYIPSTGRKLHMGNHASSDVAGVGTVVLKLTSGKELKLKDVLHVPDIRKNLVSGSLL 826
             FSSY    G  L MGN + + V GVGTV LK TSGK ++LK+V HVP I+KNLVSGSLL
Sbjct: 469  LFSSYQVGRGSSLLMGNGSLAVVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLL 528

Query: 827  VNHGFRLVFESEKFVLSKFGQFLGRGYLDKGLFKMNVMTVRRFGENMNKNESSSVYIAEC 1006
               GFRLVFES K V+SK+  F+G+GY   GLF+ ++        +M  N ++  +I+E 
Sbjct: 529  CREGFRLVFESNKCVVSKYETFVGKGYDSGGLFRFSL-------NDMCNNHNAVNHISEN 581

Query: 1007 --SNLWHIRLGHVNLNAIKRLVNLELINLPEVN*QRKCEVCVEAKMAKLPFHSVE-RSTS 1177
              SN+WH RL HVN   + RL N+ LI    +    KC  CV++K  + P  + E R+ +
Sbjct: 582  DESNVWHSRLCHVNFGCMMRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLA 641

Query: 1178 PLELIHTDVCDLKFVQTKGGKKYFITFIDDCTRFCYLYLLRSKDEALEAFKNYKNEVENQ 1357
            PLEL+H+D+C++  V TKGGKKYF+T IDDCTRFCY+YLL++KDEAL  FK YK EVENQ
Sbjct: 642  PLELVHSDLCEMNGVLTKGGKKYFMTLIDDCTRFCYVYLLKTKDEALHYFKIYKAEVENQ 701

Query: 1358 LGSRIKIIRSDRGGEYVA-PFEELCTQSGIIHQTTAPYSPQSNGVAERKNRTLKEMMNAM 1534
            L  +IK +RSDRGGEY +  F   C + GIIH+ T PYSPQSNGVAERKNRTL EM+NAM
Sbjct: 702  LERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAM 761

Query: 1535 LISSGLPQNMWGEAVLTANHILNKIPLKGKDKTPYELWKNRKPSYKYLKVWGCLAKVAIP 1714
            L ++GL +  WGEAVLTA H+LNKIP+K K+ TP+E W+ +K +  YL+ WGCLAKV +P
Sbjct: 762  LDTAGLSKEWWGEAVLTACHVLNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVP 821

Query: 1715 EPKQVKIGPKTVDCVFVGYAYQSSAYRFMIHKSENPEMTEGTIIESRNVVFFEDVYPCRE 1894
              K+ K+GPKTVDCVF+GYA  S  YRF+I  S  P+M  GTI ESR+  FFE+ +P + 
Sbjct: 822  IVKKRKLGPKTVDCVFLGYAIHSVGYRFLIVNSGVPDMHAGTIFESRDATFFENEFPMKY 881

Query: 1895 KLEVSTNKRT--HE-----TASGSTPISEEP--------RRSKRSKTAKSFGPDYITFML 2029
                S+ +    HE       +  TP  E P        R+SKR + AKSFG DYI +++
Sbjct: 882  TPSTSSKETVMPHEHFAPIEHNDQTP-EENPEEDNIVDTRKSKRQRVAKSFGDDYIVYLV 940

Query: 2030 DGEPNSIKEALSSPDAPLWQEAINSEIESILQNHTWELVDLPAGHKPLGCKWILKKKYKA 2209
            D  P +I+EA  SPDA  W+EA+ SE++SI+ N TWE+V+ P G KP+GCKW+ KKK + 
Sbjct: 941  DDTPRTIEEAYLSPDADYWKEAVRSEMDSIMSNGTWEVVERPYGCKPVGCKWVFKKKLRP 1000

Query: 2210 DGTIDKYKARLVAKGFKQKEGYDFFDTYSPVTRIASIRVLLAIAALHNLEIHQMDVKTAF 2389
            DGTI+KYKARLVAKG+ QKEG DFFDTYSPV R+ +IRVLLA+AA H L +HQMDVKTAF
Sbjct: 1001 DGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTAF 1060

Query: 2390 LNGEID 2407
            LNGE++
Sbjct: 1061 LNGELE 1066


>gb|AAG13538.1|AC023240_11 putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1408

 Score =  769 bits (1985), Expect = 0.0
 Identities = 416/846 (49%), Positives = 546/846 (64%), Gaps = 44/846 (5%)
 Frame = +2

Query: 2    VYCAVKSSKELWDSLEKKYKTEDAGTKKFVVGKFLDFVMVDSKTVMEQVQKFQLILHEIS 181
            VY  + S K++ D+LE K+   DAG++ +V+ +F D+ MVD ++V+EQ  + Q++  E+ 
Sbjct: 186  VYMHMPSGKDMRDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVVEQAHEIQMLAKELE 245

Query: 182  AEGMALPEAFQVAALIEKLPPSWRDFKNYLKHKRKEMGLEDLIVKLRIEEDNRR------ 343
                 LP+ F    +I KLPPSW DF   LKHKR+E  + DLI  L +EE  R       
Sbjct: 246  NNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDVRGK 305

Query: 344  --IXXXXXXXXSKKRP----NDKGKKP-------------AAGKFQGACYNCGKPNHMAK 466
                        KK P    N+K  KP             + GK +G C+ CGK  H AK
Sbjct: 306  KVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKSKGKAKGDCFVCGKSGHWAK 365

Query: 467  DCRQPKKKKTKPQSNANVVEERELTEVDMSAVVFEANLVDNPKEWFVDTGATCHVCSDKD 646
            DC + K +K     +AN++            ++     V +  +W+VDTGA  HVC+D  
Sbjct: 366  DCPERKDRK-----SANMIISEGGGTSGYGKILPTVLSVFHSPDWWVDTGANIHVCADIS 420

Query: 647  AFSSYIPSTGRKLHMGNHASSDVAGVGTVVLKLTSGKELKLKDVLHVPDIRKNLVSGSLL 826
             FSSY    G  L MGN + + V GVGTV LK TSGK ++LK+V HVP I+KNLVSGSLL
Sbjct: 421  LFSSYQVGRGSSLLMGNGSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLL 480

Query: 827  VNHGFRLVFESEKFVLSKFGQFLGRGYLDKGLFKMNVMTVRRFGENMNKNESSSVYIAEC 1006
                FRLVFES K V+SK+G F+G+GY   GLF+ ++        +M  N ++  +I+E 
Sbjct: 481  CREDFRLVFESNKCVVSKYGTFVGKGYDSGGLFRFSL-------NDMCNNHNAVNHISEN 533

Query: 1007 --SNLWHIRLGHVNLNAIKRLVNLELINLPEVN*QRKCEVCVEAKMAKLPFHSVE-RSTS 1177
              SN+WH RL HVN   + RL N+ LI    +    KC  CV++K  + P  + E R+ +
Sbjct: 534  DESNVWHSRLCHVNFGCMTRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLA 593

Query: 1178 PLELIHTDVCDLKFVQTKGGKKYFITFIDDCTRFCYLYLLRSKDEALEAFKNYKNEVENQ 1357
            PLELIH+D+C++  V TKGGKKYF+T IDDCTRFCY+YLL++KDEAL  FK YK EVENQ
Sbjct: 594  PLELIHSDLCEMNGVLTKGGKKYFMTLIDDCTRFCYVYLLKTKDEALHFFKIYKAEVENQ 653

Query: 1358 LGSRIKIIRSDRGGEYVA-PFEELCTQSGIIHQTTAPYSPQSNGVAERKNRTLKEMMNAM 1534
            L  +IK +RSDRGGEY +  F   C + GIIH+ T PYSPQSNGVAERKNRTL EM+NAM
Sbjct: 654  LERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAM 713

Query: 1535 LISSGLPQNMWGEAVLTANHILNKIPLKGKDKTPYELWKNRKPSYKYLKVWGCLAKVAIP 1714
            L ++GL +  WGEAVLTA H+LNKIP+K K+ TP+E W+ +K +  YL+ WGCLAKV +P
Sbjct: 714  LDTAGLSKEWWGEAVLTACHVLNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVP 773

Query: 1715 EPKQVKIGPKTVDCVFVGYAYQSSAYRFMIHKSENPEMTEGTIIESRNVVFFEDVYPCRE 1894
              K+ K+GPKTVDCVF+GYA  S  YRF+I  S  P+M  GTI+ESR+  FFE+ +P + 
Sbjct: 774  IAKKRKLGPKTVDCVFLGYAIHSVGYRFLIVNSGVPDMHVGTILESRDATFFENEFPMKY 833

Query: 1895 KLEVSTNKRT--HE-----TASGSTPISEEP--------RRSKRSKTAKSFGPDYITFML 2029
                S+ +    HE       +  TP  E P        R+SKR + AKSFG DYI +++
Sbjct: 834  TPSTSSKETVMPHEHFAPIEHNDQTP-EENPEEDNIVDTRKSKRQRVAKSFGDDYIVYLV 892

Query: 2030 DGEPNSIKEALSSPDAPLWQEAINSEIESILQNHTWELVDLPAGHKPLGCKWILKKKYKA 2209
            D  P +I+EA SSPDA  W+EA+ SE++SI+ N TWE+V+ P G KP+GCKW+ KKK + 
Sbjct: 893  DDTPRTIEEAYSSPDADYWKEAVCSEMDSIMSNGTWEVVERPYGCKPIGCKWVFKKKLRP 952

Query: 2210 DGTIDKYKARLVAKGFKQKEGYDFFDTYSPVTRIASIRVLLAIAALHNLEIHQMDVKTAF 2389
            DGTI+KYKARLVAKG+ QKEG DFFDTYSPV R+ +IRVLLA+AA H L +HQMDVKTAF
Sbjct: 953  DGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTAF 1012

Query: 2390 LNGEID 2407
            LNGE++
Sbjct: 1013 LNGELE 1018


>gb|AAS07202.1| putative integrase [Oryza sativa Japonica Group]
            gi|108708916|gb|ABF96711.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1456

 Score =  770 bits (1988), Expect = 0.0
 Identities = 413/846 (48%), Positives = 541/846 (63%), Gaps = 44/846 (5%)
 Frame = +2

Query: 2    VYCAVKSSKELWDSLEKKYKTEDAGTKKFVVGKFLDFVMVDSKTVMEQVQKFQLILHEIS 181
            VY  + S K++WDSLE K+   DAG++ +V+ +F D+ MVD ++V+EQ  + Q++  E+ 
Sbjct: 234  VYMHMPSGKDMWDSLEAKFGVSDAGSELYVMEQFYDYKMVDDRSVVEQAHEIQMLAKELE 293

Query: 182  AEGMALPEAFQVAALIEKLPPSWRDFKNYLKHKRKEMGLEDLIVKLRIEEDNRR------ 343
                 LP+ F    +I KLPPSW DF   LKHKR+E  + DLI  L +EE  R       
Sbjct: 294  NNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDVRGK 353

Query: 344  --IXXXXXXXXSKKRP----NDKGKKP-------------AAGKFQGACYNCGKPNHMAK 466
                        KK P    N+K  KP               GK +G C+ CGK  H AK
Sbjct: 354  KVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKGKGKAKGDCFVCGKSGHWAK 413

Query: 467  DCRQPKKKKTKPQSNANVVEERELTEVDMSAVVFEANLVDNPKEWFVDTGATCHVCSDKD 646
            DC + K +K     +AN++            ++     V +  +W+VDTGA  HVC+D  
Sbjct: 414  DCPERKDRK-----SANMIISEGGGTSGYGKILPTVLSVFHSPDWWVDTGANIHVCADIS 468

Query: 647  AFSSYIPSTGRKLHMGNHASSDVAGVGTVVLKLTSGKELKLKDVLHVPDIRKNLVSGSLL 826
             FSSY    G  L M N + + V GVGTV LK TSGK ++LK+V HVP I+KNLVSGSLL
Sbjct: 469  LFSSYQVGRGSSLLMVNGSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLL 528

Query: 827  VNHGFRLVFESEKFVLSKFGQFLGRGYLDKGLFKMNVMTVRRFGENMNKNESSSVYIAEC 1006
               GFRLVFES K V+SK+G F+G+GY   GLF+ ++        +M  N ++  +I+E 
Sbjct: 529  CREGFRLVFESNKCVVSKYGTFVGKGYDSGGLFRFSL-------NDMCNNHNAVNHISEN 581

Query: 1007 --SNLWHIRLGHVNLNAIKRLVNLELINLPEVN*QRKCEVCVEAKMAKLPFHSVE-RSTS 1177
              SN+WH RL HVN   + RL N+ LI    +    KC  CV++K  + P  + E R+ +
Sbjct: 582  DESNVWHSRLCHVNFGCMTRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLA 641

Query: 1178 PLELIHTDVCDLKFVQTKGGKKYFITFIDDCTRFCYLYLLRSKDEALEAFKNYKNEVENQ 1357
            PLEL+H+D+C++  V T GGKKYF+T IDDCTRFCY+YLL++KDEAL  FK YK EVENQ
Sbjct: 642  PLELVHSDLCEMNGVLTNGGKKYFMTLIDDCTRFCYVYLLKTKDEALHYFKIYKAEVENQ 701

Query: 1358 LGSRIKIIRSDRGGEYVA-PFEELCTQSGIIHQTTAPYSPQSNGVAERKNRTLKEMMNAM 1534
            L  +IK +RSDRGGEY +  F   C + GIIH+ T PYSPQSNGVAERKNRTL EM+NAM
Sbjct: 702  LERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAM 761

Query: 1535 LISSGLPQNMWGEAVLTANHILNKIPLKGKDKTPYELWKNRKPSYKYLKVWGCLAKVAIP 1714
            L ++GL +  WGEAVLTA H+LNKIP+K K+ TP+E W+ +K +  YL+ WGCLAKV +P
Sbjct: 762  LDTAGLSKEWWGEAVLTACHVLNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVP 821

Query: 1715 EPKQVKIGPKTVDCVFVGYAYQSSAYRFMIHKSENPEMTEGTIIESRNVVFFEDVYPCRE 1894
              K+ K+GPKTVDCVF+GYA  S  YRF+I  S  P+M  GTI+ESR+  FFE+ +P + 
Sbjct: 822  IAKKRKLGPKTVDCVFLGYAIHSVGYRFLIVNSGVPDMHAGTILESRDATFFENEFPMKY 881

Query: 1895 KLEVSTNKRTHETASGSTPISE---------------EPRRSKRSKTAKSFGPDYITFML 2029
                S +K T        PI                 + R+SKR + AKSFG DYI +++
Sbjct: 882  TPSTS-SKETVMPHEHFAPIEHDDQMPEENPEEDNIVDTRKSKRQRVAKSFGDDYIVYLV 940

Query: 2030 DGEPNSIKEALSSPDAPLWQEAINSEIESILQNHTWELVDLPAGHKPLGCKWILKKKYKA 2209
            D  P +I+EA SSPDA  W+EA+ SE++SI+ N TWE+V+ P G KP+GCKW+ KKK + 
Sbjct: 941  DDTPRTIEEAYSSPDADYWKEAVRSEMDSIMSNGTWEVVERPYGCKPVGCKWVFKKKLRP 1000

Query: 2210 DGTIDKYKARLVAKGFKQKEGYDFFDTYSPVTRIASIRVLLAIAALHNLEIHQMDVKTAF 2389
            DGTI+KYKARLVAKG+ QKEG DFFDTYSPV R+ +IRVLLA+AA H L +HQMDVK AF
Sbjct: 1001 DGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKIAF 1060

Query: 2390 LNGEID 2407
            LNGE++
Sbjct: 1061 LNGELE 1066


>gb|ABA99473.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1287

 Score =  764 bits (1972), Expect = 0.0
 Identities = 400/848 (47%), Positives = 542/848 (63%), Gaps = 46/848 (5%)
 Frame = +2

Query: 2    VYCAVKSSKELWDSLEKKYKTEDAGTKKFVVGKFLDFVMVDSKTVMEQVQKFQLILHEIS 181
            VY  +  +KELWD+L  K+   DA    +++ +F D+ M D+++V+EQ  + Q +  E+ 
Sbjct: 37   VYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMADNRSVVEQAHEIQTMAKELE 96

Query: 182  AEGMALPEAFQVAALIEKLPPSWRDFKNYLKHKRKEMGLEDLIVKLRIEEDNRRIXXXXX 361
                 LP+ F    +I KLPPSWR F   LKHKR+E  +E LI  L +EE  R       
Sbjct: 97   LLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASK 156

Query: 362  XXXSKKRPN--DKGKKPAAGKFQG---------------------ACYNCGKPNHMAKDC 472
                +   N   K +  + GK++                       C+ CG+  H+A+ C
Sbjct: 157  GDGGQSSANVVHKAQNKSKGKYKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKC 216

Query: 473  RQPKKKK-----TKPQSNANVVEERELTEVDMSAVVFEANLVDNPKEWFVDTGATCHVCS 637
             Q K  K     T   +N  +    + +       VF  N   N   W+VDTGA  HVC+
Sbjct: 217  PQRKGMKAPAGQTSKSANVTIGNTGDGSGYGNLPAVFSVNQSTN---WWVDTGANVHVCA 273

Query: 638  DKDAFSSYIPSTGRKLHMGNHASSDVAGVGTVVLKLTSGKELKLKDVLHVPDIRKNLVSG 817
            D   FSSY  + G  + MGN + + V GVGTV LK TSGK ++LK+V HVP I +NLVSG
Sbjct: 274  DISLFSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSG 333

Query: 818  SLLVNHGFRLVFESEKFVLSKFGQFLGRGYLDKGLFKMNVMTVRRFGENMNKNESSSV-Y 994
            S L   GF+LVFES K V+SK G F+G+GY   GLF+ ++       +  NK+ +     
Sbjct: 334  SRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFRFSL------SDFCNKSVNHICGS 387

Query: 995  IAECSNLWHIRLGHVNLNAIKRLVNLELINLPEVN*QRKCEVCVEAKMAKLPFHSVE-RS 1171
            + + +N+WH RL H+N   + RL ++ LI    +    KC  CV++K  + P  + E R+
Sbjct: 388  VDDEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERN 447

Query: 1172 TSPLELIHTDVCDLKFVQTKGGKKYFITFIDDCTRFCYLYLLRSKDEALEAFKNYKNEVE 1351
             +PLEL+H+D+C++  V TKGGK+YF+TFIDD TRFCY+YLL++KDEAL+ FK YK EVE
Sbjct: 448  LAPLELLHSDLCEMNGVLTKGGKRYFMTFIDDATRFCYVYLLKTKDEALDYFKIYKAEVE 507

Query: 1352 NQLGSRIKIIRSDRGGEYVA-PFEELCTQSGIIHQTTAPYSPQSNGVAERKNRTLKEMMN 1528
            NQL  +IK +RSDRGGE+ +  F+  C + GIIH+ T PYSP+SNG+AERKNRTL +++N
Sbjct: 508  NQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHEMTPPYSPESNGIAERKNRTLTDLVN 567

Query: 1529 AMLISSGLPQNMWGEAVLTANHILNKIPLKGKDKTPYELWKNRKPSYKYLKVWGCLAKVA 1708
            AML ++GLP+  WGEA+LT+NH+LN++P + KDKTPYE+W  RKPS  YL+ WGCLAKV 
Sbjct: 568  AMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVN 627

Query: 1709 IPEPKQVKIGPKTVDCVFVGYAYQSSAYRFMIHKSENPEMTEGTIIESRNVVFFEDVYPC 1888
            +P  K+ K+GPKTVDCVF+GYA+ S AYRF+I KSE P+M  GTI+ESR+ +FFE  +P 
Sbjct: 628  VPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDAIFFESFFPM 687

Query: 1889 REKLEVST---------------NKRTHETASGSTPISEEPRRSKRSKTAKSFGPDYITF 2023
            ++    S                 + THE  S    +SE PRRSKR +TAKSFG D+  +
Sbjct: 688  KDTHSGSNQPSEIIPSSITPPEQTEHTHELVS-EEDVSEAPRRSKRQRTAKSFGDDFTVY 746

Query: 2024 MLDGEPNSIKEALSSPDAPLWQEAINSEIESILQNHTWELVDLPAGHKPLGCKWILKKKY 2203
            ++D  P SI EA +SPDA  W+EA+ SE++SI+ N TWE+ + P G KP+GCKW+ KKK 
Sbjct: 747  LVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKL 806

Query: 2204 KADGTIDKYKARLVAKGFKQKEGYDFFDTYSPVTRIASIRVLLAIAALHNLEIHQMDVKT 2383
            + DGTI+KYKARLVAKG+ QKEG DFFDTYSPV R+ +IRVLL++AA H L +HQMDVKT
Sbjct: 807  RPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKT 866

Query: 2384 AFLNGEID 2407
            AFLNGE+D
Sbjct: 867  AFLNGELD 874


>gb|ABA95374.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1314

 Score =  764 bits (1973), Expect = 0.0
 Identities = 411/846 (48%), Positives = 544/846 (64%), Gaps = 44/846 (5%)
 Frame = +2

Query: 2    VYCAVKSSKELWDSLEKKYKTEDAGTKKFVVGKFLDFVMVDSKTVMEQVQKFQLILHEIS 181
            VY  + S K++WD+LE K+   DAG++ +V+ +F D+ MVD ++V+EQ  + Q++  E+ 
Sbjct: 218  VYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVVEQAHEIQMLAKELE 277

Query: 182  AEGMALPEAFQVAALIEKLPPSWRDFKNYLKHKRKEMGLEDLIVKLRIEEDNRR------ 343
                 LP+ F    +I KLPPSW DF   LKHKR+E  + DLI  L +E+  R       
Sbjct: 278  NNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLIGSLGVEKKARAKDVQGK 337

Query: 344  --IXXXXXXXXSKKRP----NDKGKKP-------------AAGKFQGACYNCGKPNHMAK 466
                        KK P    N+K  KP               GK +G C+ CGK  H AK
Sbjct: 338  KVEGGSSANMVQKKNPHASHNNKKVKPDVKPKTATNFKKKGKGKAKGDCFVCGKSGHWAK 397

Query: 467  DCRQPKKKKTKPQSNANVVEERELTEVDMSAVVFEANLVDNPKEWFVDTGATCHVCSDKD 646
            DC + K +K     +AN++            ++     V +  +W+VDTGA  HVC+D  
Sbjct: 398  DCPERKDRK-----SANMIISEGGGTSGYGKILPTVLSVFHSPDWWVDTGANIHVCADIS 452

Query: 647  AFSSYIPSTGRKLHMGNHASSDVAGVGTVVLKLTSGKELKLKDVLHVPDIRKNLVSGSLL 826
             FSSY    G  L +GN + + V GVGTV LK TSGK ++LK+V HVP I+KNLVSGSLL
Sbjct: 453  LFSSYQVGRGSSLLIGNGSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLL 512

Query: 827  VNHGFRLVFESEKFVLSKFGQFLGRGYLDKGLFKMNVMTVRRFGENMNKNESSSVYIAEC 1006
               GFRLVFES K V+SK+G F+G+GY   GLF+ ++        +M  N ++  +I+E 
Sbjct: 513  CREGFRLVFESNKCVVSKYGTFVGKGYDSGGLFRFSL-------NDMCNNHNAVNHISEN 565

Query: 1007 --SNLWHIRLGHVNLNAIKRLVNLELINLPEVN*QRKCEVCVEAKMAKLPFHSVE-RSTS 1177
              SN+WH RL HVN   + RL N+ LI+   +    K   CV++K  + P  + E R+ +
Sbjct: 566  DESNVWHSRLCHVNFGCMTRLANMSLISKFTLVKGSKYHTCVQSKQPRKPHKASEARNLA 625

Query: 1178 PLELIHTDVCDLKFVQTKGGKKYFITFIDDCTRFCYLYLLRSKDEALEAFKNYKNEVENQ 1357
            PLE +H+D+C++  V TKGGKKYF+T IDDCTRFCY+YLL++KDE L  FK YK EVENQ
Sbjct: 626  PLEHVHSDLCEMNGVLTKGGKKYFMTLIDDCTRFCYVYLLKTKDETLHYFKIYKAEVENQ 685

Query: 1358 LGSRIKIIRSDRGGEYVA-PFEELCTQSGIIHQTTAPYSPQSNGVAERKNRTLKEMMNAM 1534
            L  +IK +RSDRGGEY +  F   C + GIIH+ T PYSPQSNGVAERKNRTL EM+N M
Sbjct: 686  LERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNTM 745

Query: 1535 LISSGLPQNMWGEAVLTANHILNKIPLKGKDKTPYELWKNRKPSYKYLKVWGCLAKVAIP 1714
            L ++GL +  WGEAVLTA H+LNKIP+K K+ TP+E W+ +K +  YL+ WGCLAKV +P
Sbjct: 746  LDTAGLSKEWWGEAVLTACHVLNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVP 805

Query: 1715 EPKQVKIGPKTVDCVFVGYAYQSSAYRFMIHKSENPEMTEGTIIESRNVVFFEDVYPCRE 1894
              K+ K+GPKTVDCVF+GYA  S  YRF+I  S  P+M  GTI+ESR+  FFE+ +P + 
Sbjct: 806  IAKKRKLGPKTVDCVFLGYAIHSVDYRFLIVNSGVPDMHVGTILESRDATFFENEFPMKY 865

Query: 1895 KLEVSTNKRT--HE-----TASGSTPISEEP--------RRSKRSKTAKSFGPDYITFML 2029
                S+ +    HE       +  TP  E P        R+SKR + AKSFG DYI +++
Sbjct: 866  TPSTSSKETVMPHEHFAPIEHNDQTP-KENPEEDNIVDTRKSKRQRVAKSFGDDYIVYLV 924

Query: 2030 DGEPNSIKEALSSPDAPLWQEAINSEIESILQNHTWELVDLPAGHKPLGCKWILKKKYKA 2209
            D  P +I+EA SSPDA  W+EA+ SE++SI+ N TWE+V+ P G KP+GCKW+ KKK + 
Sbjct: 925  DDTPRTIEEAYSSPDADYWKEAVRSEMDSIMSNGTWEVVERPYGCKPVGCKWVFKKKLRP 984

Query: 2210 DGTIDKYKARLVAKGFKQKEGYDFFDTYSPVTRIASIRVLLAIAALHNLEIHQMDVKTAF 2389
            DGTI+KYKARLVAKG+ QKEG DFFDTYSPV R+ +IRVLLA+AA H L +HQMDVKTAF
Sbjct: 985  DGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTAF 1044

Query: 2390 LNGEID 2407
            LNGE++
Sbjct: 1045 LNGELE 1050


>gb|AAP54390.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1479

 Score =  769 bits (1985), Expect = 0.0
 Identities = 416/846 (49%), Positives = 546/846 (64%), Gaps = 44/846 (5%)
 Frame = +2

Query: 2    VYCAVKSSKELWDSLEKKYKTEDAGTKKFVVGKFLDFVMVDSKTVMEQVQKFQLILHEIS 181
            VY  + S K++ D+LE K+   DAG++ +V+ +F D+ MVD ++V+EQ  + Q++  E+ 
Sbjct: 257  VYMHMPSGKDMRDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVVEQAHEIQMLAKELE 316

Query: 182  AEGMALPEAFQVAALIEKLPPSWRDFKNYLKHKRKEMGLEDLIVKLRIEEDNRR------ 343
                 LP+ F    +I KLPPSW DF   LKHKR+E  + DLI  L +EE  R       
Sbjct: 317  NNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDVRGK 376

Query: 344  --IXXXXXXXXSKKRP----NDKGKKP-------------AAGKFQGACYNCGKPNHMAK 466
                        KK P    N+K  KP             + GK +G C+ CGK  H AK
Sbjct: 377  KVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKSKGKAKGDCFVCGKSGHWAK 436

Query: 467  DCRQPKKKKTKPQSNANVVEERELTEVDMSAVVFEANLVDNPKEWFVDTGATCHVCSDKD 646
            DC + K +K     +AN++            ++     V +  +W+VDTGA  HVC+D  
Sbjct: 437  DCPERKDRK-----SANMIISEGGGTSGYGKILPTVLSVFHSPDWWVDTGANIHVCADIS 491

Query: 647  AFSSYIPSTGRKLHMGNHASSDVAGVGTVVLKLTSGKELKLKDVLHVPDIRKNLVSGSLL 826
             FSSY    G  L MGN + + V GVGTV LK TSGK ++LK+V HVP I+KNLVSGSLL
Sbjct: 492  LFSSYQVGRGSSLLMGNGSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLL 551

Query: 827  VNHGFRLVFESEKFVLSKFGQFLGRGYLDKGLFKMNVMTVRRFGENMNKNESSSVYIAEC 1006
                FRLVFES K V+SK+G F+G+GY   GLF+ ++        +M  N ++  +I+E 
Sbjct: 552  CREDFRLVFESNKCVVSKYGTFVGKGYDSGGLFRFSL-------NDMCNNHNAVNHISEN 604

Query: 1007 --SNLWHIRLGHVNLNAIKRLVNLELINLPEVN*QRKCEVCVEAKMAKLPFHSVE-RSTS 1177
              SN+WH RL HVN   + RL N+ LI    +    KC  CV++K  + P  + E R+ +
Sbjct: 605  DESNVWHSRLCHVNFGCMTRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLA 664

Query: 1178 PLELIHTDVCDLKFVQTKGGKKYFITFIDDCTRFCYLYLLRSKDEALEAFKNYKNEVENQ 1357
            PLELIH+D+C++  V TKGGKKYF+T IDDCTRFCY+YLL++KDEAL  FK YK EVENQ
Sbjct: 665  PLELIHSDLCEMNGVLTKGGKKYFMTLIDDCTRFCYVYLLKTKDEALHFFKIYKAEVENQ 724

Query: 1358 LGSRIKIIRSDRGGEYVA-PFEELCTQSGIIHQTTAPYSPQSNGVAERKNRTLKEMMNAM 1534
            L  +IK +RSDRGGEY +  F   C + GIIH+ T PYSPQSNGVAERKNRTL EM+NAM
Sbjct: 725  LERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAM 784

Query: 1535 LISSGLPQNMWGEAVLTANHILNKIPLKGKDKTPYELWKNRKPSYKYLKVWGCLAKVAIP 1714
            L ++GL +  WGEAVLTA H+LNKIP+K K+ TP+E W+ +K +  YL+ WGCLAKV +P
Sbjct: 785  LDTAGLSKEWWGEAVLTACHVLNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVP 844

Query: 1715 EPKQVKIGPKTVDCVFVGYAYQSSAYRFMIHKSENPEMTEGTIIESRNVVFFEDVYPCRE 1894
              K+ K+GPKTVDCVF+GYA  S  YRF+I  S  P+M  GTI+ESR+  FFE+ +P + 
Sbjct: 845  IAKKRKLGPKTVDCVFLGYAIHSVGYRFLIVNSGVPDMHVGTILESRDATFFENEFPMKY 904

Query: 1895 KLEVSTNKRT--HE-----TASGSTPISEEP--------RRSKRSKTAKSFGPDYITFML 2029
                S+ +    HE       +  TP  E P        R+SKR + AKSFG DYI +++
Sbjct: 905  TPSTSSKETVMPHEHFAPIEHNDQTP-EENPEEDNIVDTRKSKRQRVAKSFGDDYIVYLV 963

Query: 2030 DGEPNSIKEALSSPDAPLWQEAINSEIESILQNHTWELVDLPAGHKPLGCKWILKKKYKA 2209
            D  P +I+EA SSPDA  W+EA+ SE++SI+ N TWE+V+ P G KP+GCKW+ KKK + 
Sbjct: 964  DDTPRTIEEAYSSPDADYWKEAVCSEMDSIMSNGTWEVVERPYGCKPIGCKWVFKKKLRP 1023

Query: 2210 DGTIDKYKARLVAKGFKQKEGYDFFDTYSPVTRIASIRVLLAIAALHNLEIHQMDVKTAF 2389
            DGTI+KYKARLVAKG+ QKEG DFFDTYSPV R+ +IRVLLA+AA H L +HQMDVKTAF
Sbjct: 1024 DGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTAF 1083

Query: 2390 LNGEID 2407
            LNGE++
Sbjct: 1084 LNGELE 1089