BLASTX nr result
ID: Rehmannia27_contig00004504
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia27_contig00004504
(2426 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera] 357 e-103
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group... 343 3e-98
emb|CAN62182.1| hypothetical protein VITISV_044400 [Vitis vinifera] 278 1e-96
gb|KYP50444.1| Retrovirus-related Pol polyprotein from transposo... 331 4e-95
gb|KYP75940.1| Retrovirus-related Pol polyprotein from transposo... 333 8e-95
gb|KYP48079.1| Retrovirus-related Pol polyprotein from transposo... 305 3e-94
gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposo... 325 1e-93
gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposo... 325 5e-92
gb|KHN36156.1| Retrovirus-related Pol polyprotein from transposo... 325 5e-92
gb|KHN22040.1| Retrovirus-related Pol polyprotein from transposo... 325 5e-92
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|... 322 7e-91
gb|KYP75416.1| Retrovirus-related Pol polyprotein from transposo... 311 9e-91
gb|KYP68392.1| Retrovirus-related Pol polyprotein from transposo... 317 1e-90
gb|KYP34577.1| Retrovirus-related Pol polyprotein from transposo... 307 3e-90
gb|KYP53274.1| Retrovirus-related Pol polyprotein from transposo... 311 4e-90
gb|KYP71160.1| Retrovirus-related Pol polyprotein from transposo... 318 4e-90
gb|KYP34572.1| Retrovirus-related Pol polyprotein from transposo... 307 5e-90
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera] 320 7e-90
gb|KYP42260.1| Retrovirus-related Pol polyprotein from transposo... 305 8e-90
gb|KYP47921.1| Retrovirus-related Pol polyprotein from transposo... 295 1e-89
>emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]
Length = 1424
Score = 357 bits (915), Expect = e-103
Identities = 175/357 (49%), Positives = 232/357 (64%)
Frame = -2
Query: 1093 VQDQAKGEVLLKGNVKDGLYSFCLASSKDPSTVSSHHQINXXXXXXXXXXXXXXSMKLKN 914
V+D + VL+ G +K GLY F K P SS ++
Sbjct: 448 VKDPSTRTVLMHGQLKGGLYVFDNTQLKLPLHNSS-------CFASTALPSKEPTVPASP 500
Query: 913 NANLELWHSRLGHAAFDVVKRVLKQCNIPYNSNEADPICSPCLVAKSHKLHFSHSTFDNY 734
+ LWH+RLGH + +V VL +CN+P+ + ICS C + K HK F HST
Sbjct: 501 TSPFTLWHNRLGHPSSHIVSLVLNKCNLPHLNKIPSLICSXCCMGKIHKSSFLHSTSSYT 560
Query: 733 ELLDLIHTDLWGPAPIKSTNGYVYYVSFIDHYSRFTWLYLLKQKSDTTNAFHHFKQLVET 554
+ L+LIHTDLWGPA S++G+ YY+ FID YSRFTW+Y+LK KS+ F HFK VE
Sbjct: 561 KPLELIHTDLWGPASTPSSHGHQYYIHFIDAYSRFTWIYMLKHKSEAFQVFLHFKSQVEL 620
Query: 553 QFNRKIKSIQSDGGTEYKPLSKLFNEHGIIHKISCPYTPEQNGLAERKHRHIVESGLSLL 374
Q KIK++QSD G EY+ ++ +GIIH+ISCPYT EQNGLAERKHRHIVE G++LL
Sbjct: 621 QLGHKIKAVQSDWGGEYRSFTQYLTSNGIIHRISCPYTHEQNGLAERKHRHIVEHGIALL 680
Query: 373 AASNLPAKYWDDAFSSAVFLLNRVPSRVLQFKTPLELATGRKPDYTSLRVFGCLCFPYLR 194
A ++LP KYWD+AF ++V+L+NR+P+ VL+ K+PLE+ +KP Y+ L+VFGC+C+P LR
Sbjct: 681 AQASLPFKYWDEAFRTSVYLINRLPTPVLKNKSPLEVLFHQKPSYSXLKVFGCMCYPNLR 740
Query: 193 PYNKHKLEFRSSPCTFLGYSSQFKGYKVMLPNHKILFTRHIVFDESKFPFINHELDK 23
P+N HKL+FRS PCTFLGYS KGYK + PN IL +R ++FDE FPF + K
Sbjct: 741 PFNHHKLQFRSIPCTFLGYSLNHKGYKCLSPNGNILISRDVIFDEXAFPFAQLQSQK 797
Score = 146 bits (369), Expect = 2e-32
Identities = 71/209 (33%), Positives = 131/209 (62%)
Frame = -1
Query: 2132 ITVKLSENNHLIWRQQVLAAITGYGLEAFITGSTPIPEKYLEGSSNTQSDLNPEYVTWNR 1953
++ KL +N L+ R+Q+L + G+ L+ F++ ++ +P ++L TQ+ +NP++ W +
Sbjct: 19 VSSKLDNHNFLVXRKQILTTLRGHKLQHFLSETSVLPSEFLSSDDETQNHVNPKFQDWEQ 78
Query: 1952 QDKLLASWLMSSLSEPILISTVGLSSSKEIWDALEINFTSQSKAKIMQQKLKLQNTRKGS 1773
Q +L+ S L++S+++ +L V +S ++W LE+ F +Q +AK+ Q K +L NT+KG
Sbjct: 79 QXQLIMSXLLASITDALLTRMVNCDTSAQVWKTLELYFATQVRAKVTQFKTQLHNTKKGD 138
Query: 1772 LTMREYLNRIKVCCDNLAAAGEKMSDDNQIAHIIGGLGNEYDSVMVSIASRIEPCSLREV 1593
L++ +YL +I+ D LA G K+S + I I GL +Y++ ++S+ SR++P ++ E+
Sbjct: 139 LSISDYLLKIRNVVDLLALVGHKISVKDHIBAIFEGLPQDYETFIISVNSRLDPYTVEEI 198
Query: 1592 HALLLSFESRLESQESLNSQINMDGSTPT 1506
ALLL+ ESR+E + D STP+
Sbjct: 199 EALLLAQESRIEKNIKI-----ADFSTPS 222
>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108708884|gb|ABF96679.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1437
Score = 343 bits (880), Expect = 3e-98
Identities = 174/356 (48%), Positives = 234/356 (65%), Gaps = 2/356 (0%)
Frame = -2
Query: 1105 RWVMVQDQAKGEVLLKGNVKDGLYSFCLASSKDPSTVSSHHQINXXXXXXXXXXXXXXSM 926
++ ++D A LL+G GLY+ PS S HHQ+
Sbjct: 407 KFFFIKDLAMRRTLLRGRCHKGLYAL-------PSPSSHHHQVKQVYGV----------- 448
Query: 925 KLKNNANLELWHSRLGHAAFDVVKRVLKQCNIP-YNSNEADPICSPCLVAKSHKLHFSHS 749
+ E WHSRLGH ++ VV++V+K N+P + +E +C C AKSH+L F S
Sbjct: 449 ---TKPSFERWHSRLGHPSYTVVEKVIKSQNLPCLDVSEQVSVCDACQKAKSHQLSFPKS 505
Query: 748 TFDNYELLDLIHTDLWGPAPIKSTNGYVYYVSFIDHYSRFTWLYLLKQKSDTTNAFHHFK 569
T ++ L+L+ +D+WGPAP +S YYVSFID YS+FTW+YLLK KS+ + FH F+
Sbjct: 506 TSESKYPLELVFSDVWGPAP-QSVGNNKYYVSFIDDYSKFTWIYLLKYKSEVFDKFHEFQ 564
Query: 568 QLVETQFNRKIKSIQSDGGTEYKPLSKLFNEHGIIHKISCPYTPEQNGLAERKHRHIVES 389
LVE FNRKI ++Q+D G EY+ L FN+ GI H +SCP+T +QNG AERKHRHIVE
Sbjct: 565 SLVERLFNRKIVAMQTDWGGEYQKLHSFFNKVGITHHVSCPHTHQQNGSAERKHRHIVEV 624
Query: 388 GLSLLAASNLPAKYWDDAFSSAVFLLNRVPSRVLQFKTPLELATGRKPDYTSLRVFGCLC 209
GL+LLA S++P K+W +AF SAV+L+NR PSRVL +PLE G KPDY +LRVFGC C
Sbjct: 625 GLALLAYSSMPLKFWGEAFLSAVYLINRTPSRVLHDVSPLERLLGHKPDYNALRVFGCAC 684
Query: 208 FPYLRPYNKHKLEFRSSPCTFLGYSSQFKGYKVMLPN-HKILFTRHIVFDESKFPF 44
+P LRPYNKHKL+FRS+ CTFLGYS+ KG+K + P+ ++ +R +VFDE++FPF
Sbjct: 685 WPNLRPYNKHKLQFRSTTCTFLGYSTLHKGFKCLDPSTGRVYISRDVVFDETQFPF 740
Score = 127 bits (319), Expect = 2e-26
Identities = 64/218 (29%), Positives = 120/218 (55%), Gaps = 2/218 (0%)
Frame = -1
Query: 2192 MTTENRENSAVQLIHPQGQLITVKLSENNHLIWRQQVLAAITGYGLEAFITGSTPIPEKY 2013
M + ++ N+ L+ GQ ++ KL ++NH +W+ Q+LA I G LE +TG P
Sbjct: 1 MASSSKNNTGNPLV---GQPVSEKLGKSNHAVWKAQILATIRGARLEGHLTGDDQPPAPI 57
Query: 2012 LEGSSNTQSDL--NPEYVTWNRQDKLLASWLMSSLSEPILISTVGLSSSKEIWDALEINF 1839
L + + NPEY W D+ + ++L+SS+++ +L+ ++ W ++ F
Sbjct: 58 LRRKEGEKEVVVSNPEYEEWVATDQQVLAYLLSSMTKDLLVQVATCRTAASAWSMIQGMF 117
Query: 1838 TSQSKAKIMQQKLKLQNTRKGSLTMREYLNRIKVCCDNLAAAGEKMSDDNQIAHIIGGLG 1659
S ++A+ + +L L +KG + + Y+ +++ D+L A G+ + DD I +I GL
Sbjct: 118 GSMTRARTINTRLSLSTLQKGDMNITTYVGKMRALADDLMAVGKPVDDDELIGYIFAGLD 177
Query: 1658 NEYDSVMVSIASRIEPCSLREVHALLLSFESRLESQES 1545
+E++ V+ +I R +P ++ E +A L+SFE RL + S
Sbjct: 178 DEFEPVISTIVGRPDPVTIGETYAQLISFEQRLAHRRS 215
Score = 61.6 bits (148), Expect = 4e-06
Identities = 27/79 (34%), Positives = 47/79 (59%)
Frame = -1
Query: 1343 CQICHRTNHTADKCFYRADLQYVPNKNNFNTGPSANIASNSSFENEHEVWFPDSGATNHL 1164
CQ+C++ HT C+YR D +VP++ T S + +N W+ D+GAT+H+
Sbjct: 279 CQLCYKRGHTVCDCWYRYDENFVPDERFAGTAVSYGVDTN---------WYLDTGATDHV 329
Query: 1163 TYDLENLSIANDFTGNDRV 1107
T +L+ L++ + + GND+V
Sbjct: 330 TGELDKLTVRDKYHGNDQV 348
>emb|CAN62182.1| hypothetical protein VITISV_044400 [Vitis vinifera]
Length = 920
Score = 278 bits (710), Expect(2) = 1e-96
Identities = 148/367 (40%), Positives = 212/367 (57%), Gaps = 5/367 (1%)
Frame = -2
Query: 1090 QDQAKGEVLLKGNVKDGLYSFCLASSKDP----STVSSHHQINXXXXXXXXXXXXXXSMK 923
+D+ VL +G +++GLY F + S+K P + S+ H S
Sbjct: 253 KDRHTKMVLAQGKLENGLYKFPVFSNKKPYSSVNNASAFHS--------------HFSST 298
Query: 922 LKNNANLELWHSRLGHAAFDVVKRVLKQCNIPYNSNEADPICSPCLVAKSHKLHFSHSTF 743
++N A ELWH+RLGH A D+V +V+ CN+ ++ +CS C +AKSH+L S F
Sbjct: 299 IENKA--ELWHNRLGHVASDIVSKVMNTCNVASGKYKST-VCSDCQLAKSHRLPTQLSNF 355
Query: 742 DNYELLDLIHTDLWGPAPIKSTNGYVYYVSFIDHYSRFTWLYLLKQKSDTTNAFHHFKQL 563
+ L+L++TD+WGPA +KST+G Y++ F+D YSR+TW Y L+ T F FK
Sbjct: 356 RASKPLELVYTDIWGPASVKSTSGAKYFILFVDDYSRYTWFYSLQTNDQTLPIFKRFKLQ 415
Query: 562 VETQFNRKIKSIQSDGGTEYKPLSKLFNEHGIIHKISCPYTPEQNGLAERKHRHIVESGL 383
+E QF+ KIK +QSD G E++ + QNG ERKH H+VE GL
Sbjct: 416 MENQFDMKIKCLQSDNGGEFRSFMSFLQ------------SVAQNGRVERKHXHVVEXGL 463
Query: 382 SLLAASNLPAKYWDDAFSSAVFLLNRVPSRVLQFKTPLELATGRKPDYTSLRVFGCLCFP 203
+LL+ + LP KYW AF + FL+NR+ S+VL++ +P R PDY SLRVFGCLC+P
Sbjct: 464 ALLSHAXLPXKYWHYAFQTTTFLINRMXSKVLEYDSPYFTLFRRHPDYKSLRVFGCLCYP 523
Query: 202 YLRPYNKHKLEFRSSPCTFLGYSSQFKGYKVM-LPNHKILFTRHIVFDESKFPFINHELD 26
+++PYN HKL++RS C FLGYS KG+ + ++ T H+VFDES FP +L
Sbjct: 524 FIQPYNTHKLQYRSVQCFFLGYSLNHKGFLCLDYATGRVYITPHVVFDESTFPLA--QLK 581
Query: 25 KSVKETD 5
S+ D
Sbjct: 582 SSISSND 588
Score = 106 bits (265), Expect(2) = 1e-96
Identities = 68/233 (29%), Positives = 111/233 (47%), Gaps = 7/233 (3%)
Frame = -1
Query: 1772 LTMREYLNRIKVCCDNLAAAGEKMSDDNQIAHIIGGLGNEYDSVMVSIASRIEPCSLREV 1593
++M +Y+ +IK DNLAA GE + + + + +++GGLG++Y+ V+ +I R + SL +
Sbjct: 1 MSMIDYIMKIKGATDNLAAIGEPVLEQDWVMNLLGGLGSDYNVVVTAINIRDDKISLEAI 60
Query: 1592 HALLLSFESRLESQESLNSQINMDGSTPTANFMTQXXXXXXXXXXXXXXXXXXXXXXXXX 1413
H++LL+FE RLE Q S+ S A+
Sbjct: 61 HSMLLAFEHRLEQQSSIEQM-----SANYASSSNNRGGGRKFNGGCGQGYAPNNNNYTYX 115
Query: 1412 XXXXXXXXXXXXXXXXXXXXGIACQICHRTNHTADKCFYRADLQY-------VPNKNNFN 1254
CQ+C + HTA C++R D+ + P+ NN N
Sbjct: 116 SHGXGGRNGQGRRQNSSPSEKPQCQLCGKFGHTAQICYHRFDISFQGGXTTTSPSLNNGN 175
Query: 1253 TGPSANIASNSSFENEHEVWFPDSGATNHLTYDLENLSIANDFTGNDRVQMGN 1095
+ ++ S + E W+ DSGA++HLT +L NL+ + +TG DRV +GN
Sbjct: 176 QNNILAMVASFSNSSADESWYLDSGASHHLTQNLGNLTSTSPYTGTDRVTIGN 228
>gb|KYP50444.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1165
Score = 331 bits (849), Expect = 4e-95
Identities = 164/350 (46%), Positives = 223/350 (63%)
Frame = -2
Query: 1093 VQDQAKGEVLLKGNVKDGLYSFCLASSKDPSTVSSHHQINXXXXXXXXXXXXXXSMKLKN 914
V+D+ G +LL+G +KDGLY S+ ST H +K
Sbjct: 325 VKDKLTGRILLEGKIKDGLYQLPGGST---STNKRPHVF----------------FSIK- 364
Query: 913 NANLELWHSRLGHAAFDVVKRVLKQCNIPYNSNEADPICSPCLVAKSHKLHFSHSTFDNY 734
E WH +LGH V+ V+K CNI + E C C K+H L F +S
Sbjct: 365 ----ETWHRKLGHPNSKVLNEVMKLCNIEASPCENFEFCEACQFGKAHNLPFQNSVSCAK 420
Query: 733 ELLDLIHTDLWGPAPIKSTNGYVYYVSFIDHYSRFTWLYLLKQKSDTTNAFHHFKQLVET 554
E LDL+H+D+WGPAPI S +G+ YYV F+D +SRFTW+Y LKQKSD AF F+ LVE
Sbjct: 421 EPLDLVHSDVWGPAPISSVSGFKYYVLFLDDWSRFTWIYPLKQKSDVFQAFIQFRNLVEN 480
Query: 553 QFNRKIKSIQSDGGTEYKPLSKLFNEHGIIHKISCPYTPEQNGLAERKHRHIVESGLSLL 374
QFN++IK++Q DGG E+K LSK+ + GI + SCPYT QNG AERKHRH+VESGL+LL
Sbjct: 481 QFNKRIKTLQCDGGGEFKSLSKVLIKTGIQLRESCPYTSAQNGRAERKHRHVVESGLTLL 540
Query: 373 AASNLPAKYWDDAFSSAVFLLNRVPSRVLQFKTPLELATGRKPDYTSLRVFGCLCFPYLR 194
A + +P YW +AFS+AVFL+NR+P++V++ K+P + + PDYT+++ FGC C+P L+
Sbjct: 541 AQAKMPLHYWWEAFSTAVFLINRLPTQVIKNKSPYQQLFDKNPDYTAMKTFGCACYPCLK 600
Query: 193 PYNKHKLEFRSSPCTFLGYSSQFKGYKVMLPNHKILFTRHIVFDESKFPF 44
PYN+HKL+F ++ C FLGYS KGYK + +I +RH+VF+E FPF
Sbjct: 601 PYNQHKLQFHTTKCVFLGYSGSHKGYKCLNSTGRIFISRHVVFNEHHFPF 650
Score = 101 bits (251), Expect = 3e-18
Identities = 72/285 (25%), Positives = 130/285 (45%), Gaps = 11/285 (3%)
Frame = -1
Query: 1916 LSEPILISTVGLSSSKEIWDALEINFTSQSKAKIMQQKLKLQNTRKGSLTMREYLNRIKV 1737
+++ + + +S++IW+ + + ++++I K + TRKG L M EYL ++K
Sbjct: 1 MTQEVATQLLHCETSQQIWEDAQSLAGAHTRSRITFLKTEFHRTRKGGLKMEEYLTKMKE 60
Query: 1736 CCDNLAAAGEKMSDDNQIAHIIGGLGNEYDSVMVSIASRIEPCSLREVHALLLSFESRLE 1557
D+LA AG +S + + + GL NEY+ ++V ++ + E + E+ A LL++E+RL
Sbjct: 61 IADDLALAGSSVSTMDLVTQTLAGLDNEYNPIVVQLSDK-EHLTWVEMQAQLLTYENRL- 118
Query: 1556 SQESLNSQINMDGSTPTANFMTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1377
E +N+Q N+ P++N T
Sbjct: 119 --EQINNQSNLT-LNPSSNIST----------ILYNRRGKSNAFGGGRGGQINRGARGGR 165
Query: 1376 XXXXXXXXGIACQICHRTNHTADKCFYRADLQYV-----------PNKNNFNTGPSANIA 1230
I CQ+C + H A C++R + Y+ + N+N +A +A
Sbjct: 166 GRGRATKDRIVCQVCCKPGHAASHCYHRFNKNYIGQNSDEQKSEKDKEQNYNF--NAYVA 223
Query: 1229 SNSSFENEHEVWFPDSGATNHLTYDLENLSIANDFTGNDRVQMGN 1095
S S+ E+ W+ DSGA+NH+TYD + N+ G + +GN
Sbjct: 224 SPSTVEDLD--WYFDSGASNHVTYDQNKVQEVNENDGKSFLTVGN 266
>gb|KYP75940.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1403
Score = 333 bits (854), Expect = 8e-95
Identities = 159/353 (45%), Positives = 225/353 (63%), Gaps = 1/353 (0%)
Frame = -2
Query: 1102 WVMVQDQAKGEVLLKGNVKDGLYSFCLASSKDPSTVSSHHQINXXXXXXXXXXXXXXSMK 923
+ +V+ Q E LL+GN+K+GLY F P H ++
Sbjct: 421 YCLVKSQDSKETLLRGNLKNGLYVFDEVQILKPDVYE--HTVDSVPTNRTTLYVQ----- 473
Query: 922 LKNNANLELWHSRLGHAAFDVVKRVLKQCNIPYNSNEADPI-CSPCLVAKSHKLHFSHST 746
+ + ++WH+RL HA+ +V+ V+K CN+P N D I C C + KSH L FS S
Sbjct: 474 -RTRKSYDVWHNRLAHASRKIVQAVMKTCNVPMPINHQDSIVCKSCCIGKSHTLPFSDSY 532
Query: 745 FDNYELLDLIHTDLWGPAPIKSTNGYVYYVSFIDHYSRFTWLYLLKQKSDTTNAFHHFKQ 566
L+L+++D+WGP+ S G+ YYV F D +S++TW+Y + KS+T + F HFK
Sbjct: 533 TVYNSPLELVYSDVWGPSHYASREGFRYYVHFTDAFSKYTWIYFMHNKSETAHHFIHFKS 592
Query: 565 LVETQFNRKIKSIQSDGGTEYKPLSKLFNEHGIIHKISCPYTPEQNGLAERKHRHIVESG 386
+VE QF KIK QSDGG E+ L+KLFNE+GI H++SCP++ +QNG AERKHRHI E G
Sbjct: 593 MVENQFGHKIKMFQSDGGKEFTCLTKLFNENGITHRLSCPHSHQQNGTAERKHRHITEVG 652
Query: 385 LSLLAASNLPAKYWDDAFSSAVFLLNRVPSRVLQFKTPLELATGRKPDYTSLRVFGCLCF 206
L+LL++S LP +W DAFS+A+ ++NR+P+ +L K+P E+ + PDY LR FGC C+
Sbjct: 653 LTLLSSSGLPHIFWSDAFSTAIHVINRLPTPILGHKSPYEVLFNKIPDYLLLRPFGCACY 712
Query: 205 PYLRPYNKHKLEFRSSPCTFLGYSSQFKGYKVMLPNHKILFTRHIVFDESKFP 47
P+LRP+N HK++FRSS C F+GYS Q KGYK N KI+ +R++VFDE FP
Sbjct: 713 PHLRPFNSHKMDFRSSQCVFIGYSMQHKGYKCFTTNGKIIISRNVVFDEDTFP 765
Score = 183 bits (465), Expect = 3e-44
Identities = 117/359 (32%), Positives = 173/359 (48%), Gaps = 13/359 (3%)
Frame = -1
Query: 2132 ITVKLSENNHLIWRQQVLAAITGYGLEAFITGSTPIPEKYLEGSSNTQSDLNPEYVTWNR 1953
I+ KLSE+N L WRQQ + I GY L+ I G+ +P ++ + L+PEY +++
Sbjct: 20 ISSKLSEDNFLTWRQQAESTIRGYRLKKHILGAMHVPAQHKTDEDKAKGVLSPEYEDYDQ 79
Query: 1952 QDKLLASWLMSSLSEPILISTVGLSSSKEIWDALEINFTSQSKAKIMQQKLKLQNTRKGS 1773
QD LL SWL+ S+ + VG +IW+ LEI F SQ+KA++ Q K++L+ +K +
Sbjct: 80 QDNLLKSWLLESMEPQFKVRMVGYEWCHQIWNNLEIYFASQTKARVKQLKIQLRGIKK-T 138
Query: 1772 LTMREYLNRIKVCCDNLAAAGEKMSDDNQIAHIIGGLGNEYDSVMVSIASRIEPCSLREV 1593
+ +YL IK +NLAA G ++ I I GL EYD + S+ +R E S+ ++
Sbjct: 139 TAINQYLLEIKKIVNNLAAIGSPLNTAEHIDAIFDGLSEEYDPFITSVLTRTEEYSVEQI 198
Query: 1592 HALLLSFESRLE---SQESLNSQINM-DGSTPTANFMTQXXXXXXXXXXXXXXXXXXXXX 1425
+LL++ E RLE + ES+ Q N+ GS + T
Sbjct: 199 ESLLMAQEERLEKHKASESVPLQANLAQGSFNSRKQFTNQGRGSNNNGTHGRGPHRGRGR 258
Query: 1424 XXXXXXXXXXXXXXXXXXXXXXXXGIACQICHRTNHTADKCFYRADLQYVPNKNNFNTG- 1248
CQ+C + H A C++R D QY N NT
Sbjct: 259 GRSAQHFGRGNKQ-------------PCQVCGKIGHIAFHCWHRYDQQYTEPNLNHNTNV 305
Query: 1247 --------PSANIASNSSFENEHEVWFPDSGATNHLTYDLENLSIANDFTGNDRVQMGN 1095
A IA + + + + W+PDSGATNHLT DL NL D+TG D++ MGN
Sbjct: 306 YNPGNQQQMQAMIAGSQNMVYDDQ-WYPDSGATNHLTSDLNNLGSKTDYTGQDKIHMGN 363
>gb|KYP48079.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 302
Score = 305 bits (782), Expect = 3e-94
Identities = 146/291 (50%), Positives = 198/291 (68%), Gaps = 1/291 (0%)
Frame = -2
Query: 898 LWHSRLGHAAFDVVKRVLKQCNIPYNSNEADPICSPCLVAKSHKLHFSHSTFDNYELLDL 719
LWH+RLG+ F V K V +QCNIP + C+ C + K+H+L + S L+L
Sbjct: 11 LWHARLGNPKFHVQKLVSQQCNIPVVNKIDGFFCNACYMGKAHRLPSNLSDLVYKNPLEL 70
Query: 718 IHTDLWGPAPIKSTNGYVYYVSFIDHYSRFTWLYLLKQKSDTTNAFHHFKQLVETQFNRK 539
+++DLWGPAPI+S+N Y YY+SF++ Y FTW+YLL+ K DT F FK +VE QFN
Sbjct: 71 VYSDLWGPAPIQSSNNYKYYLSFVNAYPCFTWIYLLQNKFDTLTVFKQFKMMVELQFNTS 130
Query: 538 IKSIQSDGGTEY-KPLSKLFNEHGIIHKISCPYTPEQNGLAERKHRHIVESGLSLLAASN 362
+KS+Q+D G E+ PL K + G+ H++ CP+TP QNG+ ERKHRHIVE GL+L AS
Sbjct: 131 LKSLQTDWGGEFIIPLPKYLKDLGVNHRVICPHTPHQNGVIERKHRHIVELGLTLSHAS- 189
Query: 361 LPAKYWDDAFSSAVFLLNRVPSRVLQFKTPLELATGRKPDYTSLRVFGCLCFPYLRPYNK 182
LP K+WD F +AV+L+NR+P+ L++ P + + PDYT L+ FGC CFP LRPYNK
Sbjct: 190 LPLKFWDSTFCTAVYLINRLPTASLKYVVPYTILFKQSPDYTFLKTFGCACFPLLRPYNK 249
Query: 181 HKLEFRSSPCTFLGYSSQFKGYKVMLPNHKILFTRHIVFDESKFPFINHEL 29
HKL+FRS C FLGYS+ KGYK + P KI ++ +VF+E +FP+ HEL
Sbjct: 250 HKLDFRSHECVFLGYSTSHKGYKCLSPIGKIFISKDVVFNEYRFPY--HEL 298
>gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1073
Score = 325 bits (834), Expect = 1e-93
Identities = 165/365 (45%), Positives = 230/365 (63%), Gaps = 1/365 (0%)
Frame = -2
Query: 1096 MVQDQAKGEVLLKGNV-KDGLYSFCLASSKDPSTVSSHHQINXXXXXXXXXXXXXXSMKL 920
+V+ Q EVLL+G+V DGLY F A +PST S Q +
Sbjct: 107 LVKSQDTNEVLLQGSVGSDGLYKFP-ALLPNPSTQSVQQQ--------QLARIFSVNTAA 157
Query: 919 KNNANLELWHSRLGHAAFDVVKRVLKQCNIPYNSNEADPICSPCLVAKSHKLHFSHSTFD 740
+ + WHSRLGH DV+K V + NI SN C+PC + KSH+L + S
Sbjct: 158 TSPVSFATWHSRLGHPNVDVMKHVSRNYNIQLVSNNKSNFCTPCCLGKSHRLPSNLSRTI 217
Query: 739 NYELLDLIHTDLWGPAPIKSTNGYVYYVSFIDHYSRFTWLYLLKQKSDTTNAFHHFKQLV 560
DL+++DLWGPAP+ ST GY YYV+F+D ++RFTW+YLLK K+ T N F F +V
Sbjct: 218 YNTPFDLVYSDLWGPAPVTSTCGYQYYVTFVDAHTRFTWIYLLKSKAQTFNVFKQFHAMV 277
Query: 559 ETQFNRKIKSIQSDGGTEYKPLSKLFNEHGIIHKISCPYTPEQNGLAERKHRHIVESGLS 380
+ Q++ IK++Q+D G EY+ + NE GI H++ CP+T QNG+AERKHRHIVE GL+
Sbjct: 278 KNQYHHPIKALQTDWGGEYRSFTTYLNEVGIQHRLICPHTHHQNGVAERKHRHIVELGLT 337
Query: 379 LLAASNLPAKYWDDAFSSAVFLLNRVPSRVLQFKTPLELATGRKPDYTSLRVFGCLCFPY 200
L+A + LP ++WD +F +AV+L+NR+PS +Q P + PDY SLR+FGC CFP+
Sbjct: 338 LMAQAELPMQFWDHSFLTAVYLINRLPSSSIQNAVPYHKLFHQPPDYLSLRIFGCSCFPH 397
Query: 199 LRPYNKHKLEFRSSPCTFLGYSSQFKGYKVMLPNHKILFTRHIVFDESKFPFINHELDKS 20
LRPYNKHKL+FRS C FLGYS+ KGYK + + ++ ++ +VF+E+KFP+ +L S
Sbjct: 398 LRPYNKHKLQFRSQECVFLGYSTSHKGYKCLAADGRLYISKDVVFNETKFPY--KDLFSS 455
Query: 19 VKETD 5
K +D
Sbjct: 456 SKASD 460
>gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1408
Score = 325 bits (834), Expect = 5e-92
Identities = 165/365 (45%), Positives = 230/365 (63%), Gaps = 1/365 (0%)
Frame = -2
Query: 1096 MVQDQAKGEVLLKGNV-KDGLYSFCLASSKDPSTVSSHHQINXXXXXXXXXXXXXXSMKL 920
+V+ Q EVLL+G+V DGLY F A +PST S Q +
Sbjct: 442 LVKSQDTNEVLLQGSVGSDGLYKFP-ALLPNPSTQSVQQQ--------QLARIFSVNTAA 492
Query: 919 KNNANLELWHSRLGHAAFDVVKRVLKQCNIPYNSNEADPICSPCLVAKSHKLHFSHSTFD 740
+ + WHSRLGH DV+K V + NI SN C+PC + KSH+L + S
Sbjct: 493 TSPVSFATWHSRLGHPNVDVMKHVSRNYNIQLVSNNKSNFCTPCCLGKSHRLPSNLSRTI 552
Query: 739 NYELLDLIHTDLWGPAPIKSTNGYVYYVSFIDHYSRFTWLYLLKQKSDTTNAFHHFKQLV 560
DL+++DLWGPAP+ ST GY YYV+F+D ++RFTW+YLLK K+ T N F F +V
Sbjct: 553 YNTPFDLVYSDLWGPAPVTSTCGYQYYVTFVDAHTRFTWIYLLKSKAQTFNVFKQFHAMV 612
Query: 559 ETQFNRKIKSIQSDGGTEYKPLSKLFNEHGIIHKISCPYTPEQNGLAERKHRHIVESGLS 380
+ Q++ IK++Q+D G EY+ + NE GI H++ CP+T QNG+AERKHRHIVE GL+
Sbjct: 613 KNQYHHPIKALQTDWGGEYRSFTTYLNEVGIQHRLICPHTHHQNGVAERKHRHIVELGLT 672
Query: 379 LLAASNLPAKYWDDAFSSAVFLLNRVPSRVLQFKTPLELATGRKPDYTSLRVFGCLCFPY 200
L+A + LP ++WD +F +AV+L+NR+PS +Q P + PDY SLR+FGC CFP+
Sbjct: 673 LMAQAELPMQFWDHSFLTAVYLINRLPSSSIQNAVPYHKLFHQPPDYLSLRIFGCSCFPH 732
Query: 199 LRPYNKHKLEFRSSPCTFLGYSSQFKGYKVMLPNHKILFTRHIVFDESKFPFINHELDKS 20
LRPYNKHKL+FRS C FLGYS+ KGYK + + ++ ++ +VF+E+KFP+ +L S
Sbjct: 733 LRPYNKHKLQFRSQECVFLGYSTSHKGYKCLAADGRLYISKDVVFNETKFPY--KDLFSS 790
Query: 19 VKETD 5
K +D
Sbjct: 791 SKASD 795
Score = 125 bits (315), Expect = 6e-26
Identities = 68/192 (35%), Positives = 110/192 (57%)
Frame = -1
Query: 2132 ITVKLSENNHLIWRQQVLAAITGYGLEAFITGSTPIPEKYLEGSSNTQSDLNPEYVTWNR 1953
I+ KL N+L+W QQV I G+ L ++ + IP+K+ + ++ Y+ W +
Sbjct: 40 ISEKLDTKNYLLWCQQVEPVIKGHRLHHYLV-NPQIPQKFATLADRDAGHISESYLAWEQ 98
Query: 1952 QDKLLASWLMSSLSEPILISTVGLSSSKEIWDALEINFTSQSKAKIMQQKLKLQNTRKGS 1773
QD+LL SWL SS+S+ +L +G SS ++WD + F S AK Q + +L++T +
Sbjct: 99 QDQLLLSWLQSSMSKDMLTRVIGCKSSFQLWDKIHTYFHSHMNAKARQLRNELRSTTLDN 158
Query: 1772 LTMREYLNRIKVCCDNLAAAGEKMSDDNQIAHIIGGLGNEYDSVMVSIASRIEPCSLREV 1593
L++ EY+ RI+ D L A G+ +S + I+ GL EY+S + I+SR + ++ EV
Sbjct: 159 LSISEYVLRIQTLVDALTAIGDSVSPKEHLDIILEGLPEEYESTVSLISSRFDLLTIDEV 218
Query: 1592 HALLLSFESRLE 1557
LLL ESRL+
Sbjct: 219 ETLLLGHESRLD 230
Score = 67.8 bits (164), Expect = 6e-08
Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = -1
Query: 1343 CQICHRTNHTADKCFYRADLQYVPNKN-NFNTGPSANIASNSSFENEHEVWFPDSGATNH 1167
CQ+CHR H A C+YR D YVP+ PS N +N N + W+PDSGA+NH
Sbjct: 300 CQVCHRYGHVASACYYRFDETYVPSSPLEAPAYPSNNQHTNPGACNNN--WYPDSGASNH 357
Query: 1166 LTYDLENLSIANDFTGNDRVQMGN 1095
+T +N+ F G D++ +GN
Sbjct: 358 VTNVSQNIHQFTPFEGPDQIHVGN 381
>gb|KHN36156.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Glycine soja]
Length = 1417
Score = 325 bits (834), Expect = 5e-92
Identities = 161/363 (44%), Positives = 229/363 (63%), Gaps = 11/363 (3%)
Frame = -2
Query: 1093 VQDQAKGEVLLKGNV-KDGLYSFC---------LASSKDPSTVSSHHQINXXXXXXXXXX 944
V+ Q +VLL+G V DGLY F AS+ D S++SS Q +
Sbjct: 426 VKYQDSKQVLLEGTVGADGLYQFKPFKFLTNSGAASNSDSSSMSSSSQFSVFNNPVNCNN 485
Query: 943 XXXXSMKLKNNANLELWHSRLGHAAFDVVKRVLKQCNIPYNSNEADPICSPCLVAKSHKL 764
++N ++WH RLGHA VK +L CNIP+++ A C+ C + KSH+L
Sbjct: 486 TVSV---MQNGNVFQMWHLRLGHAHTSAVKNILNLCNIPFSNKTATLPCTFCCMGKSHRL 542
Query: 763 HFSHSTFDNYELLDLIHTDLWGPAPIKSTNGYVYYVSFIDHYSRFTWLYLLKQKSDTTNA 584
H S + ++IH DLWGPAP S GY YY++F+D Y++FTW+Y LK KSD A
Sbjct: 543 HSPLSNTVYTKPFEVIHCDLWGPAPFVSYYGYSYYITFVDTYTKFTWIYFLKAKSDALKA 602
Query: 583 FHHFKQLVETQFNRKIKSIQSDGGTEYKPLSKLFNEHGIIHKISCPYTPEQNGLAERKHR 404
F FK L++ QF IK+IQSD G E++ + L NE GI H+++CP+T QNG ERKHR
Sbjct: 603 FTQFKALIQNQFQASIKAIQSDWGGEFRAFTALLNELGIQHRLTCPHTSHQNGTVERKHR 662
Query: 403 HIVESGLSLLAASNLPAKYWDDAFSSAVFLLNRVPSRVLQ-FKTPLELATGRKPDYTSLR 227
HIVE GL+LL+ + LP K+WD +F+ AV+L+NR+PS + F++P +PDY+ ++
Sbjct: 663 HIVEMGLTLLSHAALPLKFWDHSFTQAVYLINRLPSSAIPLFQSPYHALHQSQPDYSQIK 722
Query: 226 VFGCLCFPYLRPYNKHKLEFRSSPCTFLGYSSQFKGYKVMLPNHKILFTRHIVFDESKFP 47
VFGCLCFP+LRPYN HKL++RSSPC +LG S Q KG+K + +I ++ ++F ES+FP
Sbjct: 723 VFGCLCFPHLRPYNNHKLQYRSSPCVYLGVSPQHKGHKCLDATGRIYISKDVIFHESQFP 782
Query: 46 FIN 38
+++
Sbjct: 783 YLS 785
Score = 159 bits (402), Expect = 2e-36
Identities = 109/370 (29%), Positives = 177/370 (47%), Gaps = 24/370 (6%)
Frame = -1
Query: 2132 ITVKLSENNHLIWRQQVLAAITGYGLEAFITGSTPIPEKYLEGSSNTQSDLNPEYVTWNR 1953
+T+KL E N L+W QQV IT + L F+ + IP ++ + EY W
Sbjct: 1 LTIKLDEKNFLLWSQQVNGVITAHNLHRFVV-NPQIPLQFASIEDCALGINSDEYQQWLI 59
Query: 1952 QDKLLASWLMSSLSEPILISTVGLSSSKEIWDALEINFTSQSKAKIMQQKLKLQNTRKGS 1773
+D+ L +WL+S+LS+ +L + + E+WD + F S K++ Q + +L+NT+K S
Sbjct: 60 KDQTLFTWLLSTLSDGVLPRVLSCRHAHEVWDKIHKYFNSVLKSRARQLRSELKNTKKLS 119
Query: 1772 LTMREYLNRIKVCCDNLAAAGEKMSDDNQIAHIIGGLGNEYDSVMVSIASRIEPCSLREV 1593
++ EYL RIK ++L A G+ +S+ Q+ I+ GL E++S ++ + SR + ++ +V
Sbjct: 120 RSVNEYLLRIKSIVNSLVAVGDMVSEQEQVDSILEGLPEEFNSFVMMVYSRFDTPTVEDV 179
Query: 1592 HALLLSFESRLE--SQESLNSQINMDGSTPTANFMTQXXXXXXXXXXXXXXXXXXXXXXX 1419
ALLL E++ E QE + + S A+ T
Sbjct: 180 EALLLLQEAQFEKFKQELTSPSV----SANVAHTETNASDSNSEHESQELGTEHYNVNAN 235
Query: 1418 XXXXXXXXXXXXXXXXXXXXXXGIACQICHRTNHTADKCFYRADLQYVPNKN-------- 1263
+ CQIC + NH A C+YR D Q + N+N
Sbjct: 236 RGRGRGKGRGRGRGKGQAQNQGKVKCQICAKPNHDAINCWYRYDPQAM-NQNSRGGYQVG 294
Query: 1262 ------NFN--TGPSANIASNSSF------ENEHEVWFPDSGATNHLTYDLENLSIANDF 1125
NFN P+A++A + + + W+PDSGA++HLTY+ NLS ++ +
Sbjct: 295 PSNRPQNFNPYMRPTAHLAMPQPYAMPNMDQFSNGAWYPDSGASHHLTYNPNNLSYSSPY 354
Query: 1124 TGNDRVQMGN 1095
TG D+V MGN
Sbjct: 355 TGQDQVVMGN 364
>gb|KHN22040.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Glycine soja]
Length = 1417
Score = 325 bits (834), Expect = 5e-92
Identities = 160/363 (44%), Positives = 230/363 (63%), Gaps = 11/363 (3%)
Frame = -2
Query: 1093 VQDQAKGEVLLKGNV-KDGLYSFC---------LASSKDPSTVSSHHQINXXXXXXXXXX 944
V+ Q +VLL+G V DGLY F AS+ D S++SS Q +
Sbjct: 426 VKYQDSKQVLLEGTVGADGLYQFKPFKFLTNSGAASNSDSSSMSSSSQFSVFNNPVNCNN 485
Query: 943 XXXXSMKLKNNANLELWHSRLGHAAFDVVKRVLKQCNIPYNSNEADPICSPCLVAKSHKL 764
++N ++WH RLGHA VK +L CNIP+++ A C+ C + KSH+L
Sbjct: 486 TVSV---MQNGNVFQMWHLRLGHAHTSAVKNILNLCNIPFSNKTATLPCTFCCMGKSHRL 542
Query: 763 HFSHSTFDNYELLDLIHTDLWGPAPIKSTNGYVYYVSFIDHYSRFTWLYLLKQKSDTTNA 584
H S + ++IH DLWGPAP S GY YY++F+D Y++FTW+Y LK KSD A
Sbjct: 543 HSPLSNTVYTKPFEVIHCDLWGPAPFVSYYGYSYYITFVDTYTKFTWIYFLKAKSDALKA 602
Query: 583 FHHFKQLVETQFNRKIKSIQSDGGTEYKPLSKLFNEHGIIHKISCPYTPEQNGLAERKHR 404
F FK L++ QF IK+IQSD G E++ + L NE GI H+++CP+T QNG ERKHR
Sbjct: 603 FTQFKALIQNQFQASIKAIQSDWGGEFRAFTALLNELGIQHRLTCPHTSHQNGTVERKHR 662
Query: 403 HIVESGLSLLAASNLPAKYWDDAFSSAVFLLNRVPSRVLQ-FKTPLELATGRKPDYTSLR 227
HIVE GL+LL+ ++LP K+WD +F+ AV+L+NR+PS + F++P +PDY+ ++
Sbjct: 663 HIVEMGLTLLSHADLPLKFWDHSFTQAVYLINRLPSSAIPLFQSPYHALHQSQPDYSQIK 722
Query: 226 VFGCLCFPYLRPYNKHKLEFRSSPCTFLGYSSQFKGYKVMLPNHKILFTRHIVFDESKFP 47
VFGCLCFP+LRPYN HKL+++SSPC +LG S Q KG+K + +I ++ ++F ES+FP
Sbjct: 723 VFGCLCFPHLRPYNNHKLQYKSSPCVYLGVSPQHKGHKCLDATGRIYISKDVIFHESQFP 782
Query: 46 FIN 38
+++
Sbjct: 783 YLS 785
Score = 159 bits (402), Expect = 2e-36
Identities = 109/370 (29%), Positives = 177/370 (47%), Gaps = 24/370 (6%)
Frame = -1
Query: 2132 ITVKLSENNHLIWRQQVLAAITGYGLEAFITGSTPIPEKYLEGSSNTQSDLNPEYVTWNR 1953
+T+KL E N L+W QQV IT + L F+ + IP ++ + EY W
Sbjct: 1 LTIKLDEKNFLLWSQQVNGVITAHNLHRFVV-NPQIPLQFASIEDCALGINSDEYQQWLI 59
Query: 1952 QDKLLASWLMSSLSEPILISTVGLSSSKEIWDALEINFTSQSKAKIMQQKLKLQNTRKGS 1773
+D+ L +WL+S+LS+ +L + + E+WD + F S K++ Q + +L+NT+K S
Sbjct: 60 KDQTLFTWLLSTLSDGVLPRVLSCRHAHEVWDKIHKYFNSVLKSRARQLRSELKNTKKLS 119
Query: 1772 LTMREYLNRIKVCCDNLAAAGEKMSDDNQIAHIIGGLGNEYDSVMVSIASRIEPCSLREV 1593
++ EYL RIK ++L A G+ +S+ Q+ I+ GL E++S ++ + SR + ++ +V
Sbjct: 120 RSVNEYLLRIKSIVNSLVAVGDMVSEQEQVDSILEGLPEEFNSFVMMVYSRFDTPTVEDV 179
Query: 1592 HALLLSFESRLE--SQESLNSQINMDGSTPTANFMTQXXXXXXXXXXXXXXXXXXXXXXX 1419
ALLL E++ E QE + + S A+ T
Sbjct: 180 EALLLLQEAQFEKFKQELTSPSV----SANVAHTETNASDSNSEHESQELGTEHYNVNAN 235
Query: 1418 XXXXXXXXXXXXXXXXXXXXXXGIACQICHRTNHTADKCFYRADLQYVPNKN-------- 1263
+ CQIC + NH A C+YR D Q + N+N
Sbjct: 236 RGRGRGKGRGRGRGKGQAQNQGKVKCQICAKPNHDAINCWYRYDPQAM-NQNSRGGYQVG 294
Query: 1262 ------NFN--TGPSANIASNSSF------ENEHEVWFPDSGATNHLTYDLENLSIANDF 1125
NFN P+A++A + + + W+PDSGA++HLTY+ NLS ++ +
Sbjct: 295 PSNRPQNFNPYMRPTAHLAMPQPYAMPNMDQFSNGAWYPDSGASHHLTYNPNNLSYSSPY 354
Query: 1124 TGNDRVQMGN 1095
TG D+V MGN
Sbjct: 355 TGQDQVVMGN 364
>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1447
Score = 322 bits (826), Expect = 7e-91
Identities = 153/290 (52%), Positives = 208/290 (71%), Gaps = 2/290 (0%)
Frame = -2
Query: 907 NLELWHSRLGHAAFDVVKRVLKQCNIP-YNSNEADPICSPCLVAKSHKLHFSHSTFDNYE 731
+ E WHSRLGH A +V++V+ + N+P + +C C KSH+L +S S+ +
Sbjct: 454 SFERWHSRLGHPASPIVEKVISKNNLPCLAESNKQSVCDACQQGKSHQLPYSRSSSMSSH 513
Query: 730 LLDLIHTDLWGPAPIKSTNGYVYYVSFIDHYSRFTWLYLLKQKSDTTNAFHHFKQLVETQ 551
L+LI++D+WGPA + S G YYVSFI YS+FTWLYL+K KS+ FH F+ LVE
Sbjct: 514 PLELIYSDVWGPA-LTSVGGKQYYVSFIGDYSKFTWLYLIKHKSEVIQKFHEFQALVERL 572
Query: 550 FNRKIKSIQSDGGTEYKPLSKLFNEHGIIHKISCPYTPEQNGLAERKHRHIVESGLSLLA 371
FNRKI ++QSD G EY+ L F + GI H +SCP+T +QNG AERKHRHIVE GL+LLA
Sbjct: 573 FNRKIIAMQSDWGGEYEKLHSFFTKIGITHHVSCPHTHQQNGSAERKHRHIVEVGLTLLA 632
Query: 370 ASNLPAKYWDDAFSSAVFLLNRVPSRVLQFKTPLELATGRKPDYTSLRVFGCLCFPYLRP 191
S++P K+WD+AF +AV+L+NR P+++LQF TPLE + PDY+SLRVFGC C+P+LRP
Sbjct: 633 YSSMPLKFWDEAFQAAVYLINRTPTKLLQFLTPLEHLFNQTPDYSSLRVFGCACWPHLRP 692
Query: 190 YNKHKLEFRSSPCTFLGYSSQFKGYKVMLPN-HKILFTRHIVFDESKFPF 44
YN HKL+FRS CTFLGYS+ KG+K + P+ ++ +R ++FDE+ FPF
Sbjct: 693 YNTHKLQFRSKQCTFLGYSTLHKGFKCLDPSTGRVYISRDVIFDETNFPF 742
Score = 133 bits (335), Expect = 3e-28
Identities = 67/211 (31%), Positives = 126/211 (59%), Gaps = 5/211 (2%)
Frame = -1
Query: 2141 GQLITVKLSENNHLIWRQQVLAAITGYGLEAFITGSTPIPEKYLEGSSNTQSDL-----N 1977
G I+ KLS++NH +W+ QV+AA+ G LE +TG+T P + ++ + + N
Sbjct: 15 GNAISEKLSKSNHALWKAQVMAAVRGARLEGHLTGATKTPNALITTTAGDKGEKEVTVRN 74
Query: 1976 PEYVTWNRQDKLLASWLMSSLSEPILISTVGLSSSKEIWDALEINFTSQSKAKIMQQKLK 1797
PE+ W D+ + +L+S+L+ +L ++ W LE ++S ++A+ + ++
Sbjct: 75 PEFDDWVATDQQVLGFLLSTLARDVLAQVATCGTAAAAWQMLEEMYSSVTRARFINTRIA 134
Query: 1796 LQNTRKGSLTMREYLNRIKVCCDNLAAAGEKMSDDNQIAHIIGGLGNEYDSVMVSIASRI 1617
L NT+KG+L++ EY++++K D + AAG+ + DD+ I++II GL + Y+ V+ +I +
Sbjct: 135 LSNTKKGTLSINEYVSKMKALADEMTAAGKIVDDDDLISYIIAGLDDTYEPVISTIVGK- 193
Query: 1616 EPCSLREVHALLLSFESRLESQESLNSQINM 1524
+ +L E ++ LLSFE RL + +S +N+
Sbjct: 194 DTMTLGEAYSQLLSFEQRLALRHGGDSSVNL 224
>gb|KYP75416.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 785
Score = 311 bits (798), Expect = 9e-91
Identities = 152/354 (42%), Positives = 220/354 (62%), Gaps = 3/354 (0%)
Frame = -2
Query: 1096 MVQDQAKGEVLLKGNV-KDGLYSF--CLASSKDPSTVSSHHQINXXXXXXXXXXXXXXSM 926
+V+ Q + LL G V DGLY F L + P+ S + +
Sbjct: 353 LVKSQDTKDTLLMGVVGPDGLYQFPSLLQPRQQPAITPSANTASC--------------- 397
Query: 925 KLKNNANLELWHSRLGHAAFDVVKRVLKQCNIPYNSNEADPICSPCLVAKSHKLHFSHST 746
++ WHSRLGH DV+K V + CN P + A C+PC + KSHKL + S
Sbjct: 398 ---HSVPYVTWHSRLGHPHNDVIKSVFRLCNFPIINKTASDFCTPCCLGKSHKLPSNSSK 454
Query: 745 FDNYELLDLIHTDLWGPAPIKSTNGYVYYVSFIDHYSRFTWLYLLKQKSDTTNAFHHFKQ 566
+ +LI++DLWGPAPI S NGY YYV+F+D ++RFTW++LLK+K+ T + F F
Sbjct: 455 TVYHTPFELIYSDLWGPAPITSDNGYQYYVTFVDAHTRFTWIFLLKRKAHTLDVFKQFHA 514
Query: 565 LVETQFNRKIKSIQSDGGTEYKPLSKLFNEHGIIHKISCPYTPEQNGLAERKHRHIVESG 386
+++ QF IK+IQ+D G E++ + ++GI H++ CP+T QNG+ ERKHRHIVE G
Sbjct: 515 MIQNQFQLPIKAIQTDWGGEFRSFTSYLAQNGIQHRLICPHTHHQNGVVERKHRHIVELG 574
Query: 385 LSLLAASNLPAKYWDDAFSSAVFLLNRVPSRVLQFKTPLELATGRKPDYTSLRVFGCLCF 206
L++LA ++LP ++WD AF ++V+L+NR+PS +Q P + PDY LR+FGC CF
Sbjct: 575 LTMLAQAHLPMQFWDHAFLTSVYLINRLPSSSIQNDVPFRKLFHQLPDYNFLRIFGCSCF 634
Query: 205 PYLRPYNKHKLEFRSSPCTFLGYSSQFKGYKVMLPNHKILFTRHIVFDESKFPF 44
P+LRPYNK+KL+FRS C FLGYS+ KGYK + P +I ++ +VF E++FP+
Sbjct: 635 PHLRPYNKNKLQFRSQECVFLGYSTSHKGYKCLAPTGRIFISKDVVFCETRFPY 688
>gb|KYP68392.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1085
Score = 317 bits (813), Expect = 1e-90
Identities = 159/352 (45%), Positives = 217/352 (61%), Gaps = 1/352 (0%)
Frame = -2
Query: 1096 MVQDQAKGEVLLKGNV-KDGLYSFCLASSKDPSTVSSHHQINXXXXXXXXXXXXXXSMKL 920
+V+ Q EVLL+G+V DGLY F A PST S +
Sbjct: 314 LVKSQDTKEVLLQGSVGPDGLYQFP-ALLPTPSTQSVQQ--------VQPARSFSVNTAA 364
Query: 919 KNNANLELWHSRLGHAAFDVVKRVLKQCNIPYNSNEADPICSPCLVAKSHKLHFSHSTFD 740
K+ + WHSRLGH DV+K V + NI +N C+PC + KSH+L + S
Sbjct: 365 KSYVSFATWHSRLGHPNVDVMKHVSRNFNIQLVTNNKSDFCTPCCLGKSHRLPSNLSKIV 424
Query: 739 NYELLDLIHTDLWGPAPIKSTNGYVYYVSFIDHYSRFTWLYLLKQKSDTTNAFHHFKQLV 560
DL++ DLWGPAP+ ST GY YYV+F+D ++RFTW+YLLK K+ T N F F +V
Sbjct: 425 YNTPFDLVYNDLWGPAPVTSTCGYQYYVTFVDAHTRFTWIYLLKNKAQTFNVFKQFHAMV 484
Query: 559 ETQFNRKIKSIQSDGGTEYKPLSKLFNEHGIIHKISCPYTPEQNGLAERKHRHIVESGLS 380
Q++ IK++Q+D G EY+ + NE GI H++ C +T QNG+ ERKHRHIVE GL+
Sbjct: 485 NNQYHHPIKALQTDWGGEYRSFTNYLNEVGIQHRLICRHTHHQNGVVERKHRHIVELGLT 544
Query: 379 LLAASNLPAKYWDDAFSSAVFLLNRVPSRVLQFKTPLELATGRKPDYTSLRVFGCLCFPY 200
LLA + LP ++WD AF + V+L+NR+PS +Q P + PDY SLR+FGC CFP+
Sbjct: 545 LLAQAELPMQFWDHAFLTGVYLINRLPSSSIQNVVPYHKLFHQPPDYLSLRIFGCSCFPH 604
Query: 199 LRPYNKHKLEFRSSPCTFLGYSSQFKGYKVMLPNHKILFTRHIVFDESKFPF 44
LRPYNKHKL+FRS C FLGYS+ KGYK + + ++ + +VF+E+KFP+
Sbjct: 605 LRPYNKHKLQFRSQECVFLGYSTSHKGYKCLAADERLYISNDVVFNETKFPY 656
Score = 91.3 bits (225), Expect = 3e-15
Identities = 53/137 (38%), Positives = 79/137 (57%), Gaps = 1/137 (0%)
Frame = -1
Query: 1952 QDKLLASWLMSSLSEPILISTVGLSSSKEIWDALEINFTSQSKAKIMQQKLKLQNTRKGS 1773
QD+LL SWL SS+S+ +L +G SS ++WD + F S AK Q + +L+NT +
Sbjct: 1 QDQLLLSWLQSSMSKDMLTRVIGCKSSFQLWDKIHSYFHSHMNAKARQLRNELRNTSLEN 60
Query: 1772 LTMREYLNRIKVCCDNLAAAGEKMSDDNQIAHIIGGLGNEYDSVMVSIASRIEPCSLREV 1593
T+ EY+ RI+ D L A G+ +S + I+ GL EY+S + I+SR + ++ EV
Sbjct: 61 QTISEYVLRIQTLVDALTAIGDSVSPKEHLDIILEGLPEEYESTVSLISSRFDLLTIDEV 120
Query: 1592 HALLLSFES-RLESQES 1545
LLL ES L QE+
Sbjct: 121 ETLLLGHESPHLAHQEN 137
Score = 68.2 bits (165), Expect = 4e-08
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Frame = -1
Query: 1343 CQICHRTNHTADKCFYRADLQYVPNKN-NFNTGPSANIASNSSFENEHEVWFPDSGATNH 1167
CQ+CHR H A C+YR D YVP+ S N +N+S N + W+PDSGA+NH
Sbjct: 172 CQVCHRYGHVASACYYRFDETYVPSSPLEAPAYHSTNQHANTSVCNNN--WYPDSGASNH 229
Query: 1166 LTYDLENLSIANDFTGNDRVQMGN 1095
+T +N+ F G D++ +GN
Sbjct: 230 VTNVSQNIQQFTPFEGPDQIHVGN 253
>gb|KYP34577.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 661
Score = 307 bits (786), Expect = 3e-90
Identities = 156/354 (44%), Positives = 214/354 (60%), Gaps = 3/354 (0%)
Frame = -2
Query: 1096 MVQDQAKGEVLLKGNV-KDGLYSF-CLASSKDPSTV-SSHHQINXXXXXXXXXXXXXXSM 926
+V+ Q E LL G V DGLY F L + PS V S H ++
Sbjct: 65 LVKSQDSNETLLLGVVGPDGLYQFPSLLLPRHPSAVLPSAHTVS---------------- 108
Query: 925 KLKNNANLELWHSRLGHAAFDVVKRVLKQCNIPYNSNEADPICSPCLVAKSHKLHFSHST 746
N+ + WHSRLGHA DV+K V K CN P + C+ C + KSHKL S
Sbjct: 109 --SNSVSYATWHSRLGHAHNDVIKSVFKLCNFPIINKSVSDFCTSCCLGKSHKLPSQLSK 166
Query: 745 FDNYELLDLIHTDLWGPAPIKSTNGYVYYVSFIDHYSRFTWLYLLKQKSDTTNAFHHFKQ 566
+ +LI++DLWGPAP+ S NGY YYV+ +D ++RFTW++LLK K+ T + F F
Sbjct: 167 TVYHTPFELIYSDLWGPAPVLSDNGYQYYVTLVDAHTRFTWIFLLKSKAHTLDVFKQFHA 226
Query: 565 LVETQFNRKIKSIQSDGGTEYKPLSKLFNEHGIIHKISCPYTPEQNGLAERKHRHIVESG 386
+V+ QF IK+IQ+D G E++ + +HGI H+I CP+T QNG+ E KHRHIVE G
Sbjct: 227 MVQNQFQLPIKAIQTDWGGEFRSFTSYLAQHGIHHRIICPHTHHQNGVVECKHRHIVELG 286
Query: 385 LSLLAASNLPAKYWDDAFSSAVFLLNRVPSRVLQFKTPLELATGRKPDYTSLRVFGCLCF 206
L+LLA + L +WD AF ++V+L+NR+PS +Q P + + PDY LRVFGC CF
Sbjct: 287 LTLLAQAQLSMSFWDYAFLTSVYLINRLPSSSIQQDVPFQKLFHQLPDYNFLRVFGCSCF 346
Query: 205 PYLRPYNKHKLEFRSSPCTFLGYSSQFKGYKVMLPNHKILFTRHIVFDESKFPF 44
P+L PYNK KL+FRS C FLGYS+ KGYK + P+ +I ++ ++F E+ FP+
Sbjct: 347 PHLWPYNKTKLQFRSQECVFLGYSTSHKGYKCLAPSGRIFISKDVIFCENHFPY 400
>gb|KYP53274.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 839
Score = 311 bits (797), Expect = 4e-90
Identities = 157/355 (44%), Positives = 215/355 (60%), Gaps = 4/355 (1%)
Frame = -2
Query: 1096 MVQDQAKGEVLLKGNV-KDGLYSF-CLASSKDPS--TVSSHHQINXXXXXXXXXXXXXXS 929
+V+ QA E LL G + DGLY F L + PS TVSS
Sbjct: 105 LVKSQANSETLLHGVLGPDGLYQFPSLLPPRQPSAHTVSSQ------------------- 145
Query: 928 MKLKNNANLELWHSRLGHAAFDVVKRVLKQCNIPYNSNEADPICSPCLVAKSHKLHFSHS 749
+ + WHSRLGH DV+K V K CN P + C+ C + KSHKL S
Sbjct: 146 -----SVSYATWHSRLGHPHNDVLKSVFKLCNFPNINKSVSDFCTSCCLGKSHKLPSQLS 200
Query: 748 TFDNYELLDLIHTDLWGPAPIKSTNGYVYYVSFIDHYSRFTWLYLLKQKSDTTNAFHHFK 569
+ +LI++DLWGPAP+ S NGY YYV+F+D ++RFTW+++LK K+ T + F F
Sbjct: 201 KTVYHTPFELIYSDLWGPAPVLSDNGYQYYVTFVDAHTRFTWIFMLKSKAHTLDVFKQFH 260
Query: 568 QLVETQFNRKIKSIQSDGGTEYKPLSKLFNEHGIIHKISCPYTPEQNGLAERKHRHIVES 389
+V QF IK+IQ+D G E++ + +HGI H+I CP+T QNG+ ERKHRHIVE
Sbjct: 261 AMVRNQFQLPIKAIQTDWGGEFRSFTSYLAQHGIHHRIICPHTHHQNGVVERKHRHIVEL 320
Query: 388 GLSLLAASNLPAKYWDDAFSSAVFLLNRVPSRVLQFKTPLELATGRKPDYTSLRVFGCLC 209
GL+LLA ++LP +WD AF ++V+L+NR+PS +Q P PDY LRVFGC C
Sbjct: 321 GLTLLAQAHLPMHFWDYAFLTSVYLINRLPSSSIQQDVPFRKLFHHLPDYNFLRVFGCSC 380
Query: 208 FPYLRPYNKHKLEFRSSPCTFLGYSSQFKGYKVMLPNHKILFTRHIVFDESKFPF 44
FP+LRPYNK KL+FRS C FLGYS+ KGYK + P+ ++ ++ ++F E++FP+
Sbjct: 381 FPHLRPYNKTKLQFRSQECVFLGYSTSHKGYKCLAPSGRVFISKDVIFCENRFPY 435
>gb|KYP71160.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1268
Score = 318 bits (816), Expect = 4e-90
Identities = 160/353 (45%), Positives = 214/353 (60%), Gaps = 1/353 (0%)
Frame = -2
Query: 1093 VQDQAKGEVLLKGNV-KDGLYSFCLASSKDPSTVSSHHQINXXXXXXXXXXXXXXSMKLK 917
V+ Q E+LL+G V DGLYSF + PS + S +
Sbjct: 362 VKSQVTNEILLQGVVGSDGLYSFSNLELQGPSVLVSSSMASSVDPAVSAFAIPSSHTS-- 419
Query: 916 NNANLELWHSRLGHAAFDVVKRVLKQCNIPYNSNEADPICSPCLVAKSHKLHFSHSTFDN 737
WH+RL H V+K VL CNI ++ CS C V KSH+L S
Sbjct: 420 -------WHTRLSHPNSHVLKLVLNHCNIAPSNRNVSEFCSSCCVGKSHRLPSLVSESVY 472
Query: 736 YELLDLIHTDLWGPAPIKSTNGYVYYVSFIDHYSRFTWLYLLKQKSDTTNAFHHFKQLVE 557
LDLI TDLWGP+ + S +GYVYYVSFID +S+FTW+Y LK KSDT + F FK +VE
Sbjct: 473 SAPLDLIFTDLWGPSHVVSHSGYVYYVSFIDAFSKFTWIYPLKSKSDTLSVFQQFKAMVE 532
Query: 556 TQFNRKIKSIQSDGGTEYKPLSKLFNEHGIIHKISCPYTPEQNGLAERKHRHIVESGLSL 377
Q N KIKSIQSD G EY+ + HGI H++ CP+T QNG+ ERKHRHIV+ G++L
Sbjct: 533 LQLNTKIKSIQSDWGGEYRSFTAFLATHGITHRLICPHTHHQNGVVERKHRHIVDIGITL 592
Query: 376 LAASNLPAKYWDDAFSSAVFLLNRVPSRVLQFKTPLELATGRKPDYTSLRVFGCLCFPYL 197
L ++LP +WD AFS+AV+L+NR+P+ L F P + + PDY L+ FGC CFP+L
Sbjct: 593 LHHASLPLTFWDYAFSTAVYLINRLPTASLNFDIPFTVLFKQTPDYKFLKTFGCACFPFL 652
Query: 196 RPYNKHKLEFRSSPCTFLGYSSQFKGYKVMLPNHKILFTRHIVFDESKFPFIN 38
RPY HKL+FRS C FLGYS+ KGYK + + KI ++ ++F+E++FP+++
Sbjct: 653 RPYTTHKLDFRSQECVFLGYSNSHKGYKCLSASGKIYISKDVIFNETRFPYLD 705
Score = 106 bits (264), Expect = 7e-20
Identities = 85/323 (26%), Positives = 130/323 (40%), Gaps = 40/323 (12%)
Frame = -1
Query: 1943 LLASWLMSSLSEPILISTVGLSSSKEIWDALEINFTSQSKAKIMQQKLKLQNTRKGSLTM 1764
+L +WL S+LS+ IL +G S ++W+ + F +Q+KA Q + L+ T TM
Sbjct: 1 MLLTWLQSTLSKSILSRVIGSVHSYQVWEKIHEYFHTQTKACARQLRTDLRTTSLDGKTM 60
Query: 1763 REYLNRIKVCCDNLAAAGEKMSDDNQIAHIIGGLGNEYDSVMVSIASRIEPCSLREVHAL 1584
RE+L++IK D LA G D + I+ GL +Y V+ I S+ + EV AL
Sbjct: 61 REFLSQIKNIADELAGVGHPFPLDEYVDAILEGLPQDYAPVVSVIESKFATPPIAEVEAL 120
Query: 1583 LLSFESRLESQESLNSQINMDGSTPTANFMTQXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1404
LL+ ESR N++ +P+ N+
Sbjct: 121 LLAHESR-------NNRFCKQSFSPSINY----------------THGYARGSVNHGGGN 157
Query: 1403 XXXXXXXXXXXXXXXXXGIACQICHRTNHTADKCFYRADLQYVPNKN------------- 1263
CQIC + +HTA+ CFYRAD Y P+ +
Sbjct: 158 SGRRGGSSGRGRGGRFANFQCQICLKYSHTANICFYRADANYHPHDSLVLYDPSTLQPVQ 217
Query: 1262 --------------------------NFNT-GPSANIASNSSFENEHEVWFPDSGATNHL 1164
N N+ PSA +A+ S + W PDSGA+ H+
Sbjct: 218 VNSPPSITKTSNSWGNPTSKQPSQDTNVNSVTPSAMLANTPSQGAVNSTWIPDSGASFHV 277
Query: 1163 TYDLENLSIANDFTGNDRVQMGN 1095
T + +N+ F G D++ +GN
Sbjct: 278 TGEPQNVHQLGHFDGPDQIFIGN 300
>gb|KYP34572.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 682
Score = 307 bits (786), Expect = 5e-90
Identities = 156/354 (44%), Positives = 214/354 (60%), Gaps = 3/354 (0%)
Frame = -2
Query: 1096 MVQDQAKGEVLLKGNV-KDGLYSF-CLASSKDPSTV-SSHHQINXXXXXXXXXXXXXXSM 926
+V+ Q E LL G V DGLY F L + PS V S H ++
Sbjct: 86 LVKSQDSNETLLLGVVGPDGLYQFPSLLLPRHPSAVLPSAHTVS---------------- 129
Query: 925 KLKNNANLELWHSRLGHAAFDVVKRVLKQCNIPYNSNEADPICSPCLVAKSHKLHFSHST 746
N+ + WHSRLGHA DV+K V K CN P + C+ C + KSHKL S
Sbjct: 130 --SNSVSYATWHSRLGHAHNDVIKSVFKLCNFPIINKSVSDFCTSCCLGKSHKLPSQLSK 187
Query: 745 FDNYELLDLIHTDLWGPAPIKSTNGYVYYVSFIDHYSRFTWLYLLKQKSDTTNAFHHFKQ 566
+ +LI++DLWGPAP+ S NGY YYV+ +D ++RFTW++LLK K+ T + F F
Sbjct: 188 TVYHTPFELIYSDLWGPAPVLSDNGYQYYVTLVDAHTRFTWIFLLKSKAHTLDVFKQFHA 247
Query: 565 LVETQFNRKIKSIQSDGGTEYKPLSKLFNEHGIIHKISCPYTPEQNGLAERKHRHIVESG 386
+V+ QF IK+IQ+D G E++ + +HGI H+I CP+T QNG+ E KHRHIVE G
Sbjct: 248 MVQNQFQLPIKAIQTDWGGEFRSFTSYLAQHGIHHRIICPHTHHQNGVVECKHRHIVELG 307
Query: 385 LSLLAASNLPAKYWDDAFSSAVFLLNRVPSRVLQFKTPLELATGRKPDYTSLRVFGCLCF 206
L+LLA + L +WD AF ++V+L+NR+PS +Q P + + PDY LRVFGC CF
Sbjct: 308 LTLLAQAQLSMSFWDYAFLTSVYLINRLPSSSIQQDVPFQKLFHQLPDYNFLRVFGCSCF 367
Query: 205 PYLRPYNKHKLEFRSSPCTFLGYSSQFKGYKVMLPNHKILFTRHIVFDESKFPF 44
P+L PYNK KL+FRS C FLGYS+ KGYK + P+ +I ++ ++F E+ FP+
Sbjct: 368 PHLWPYNKTKLQFRSQECVFLGYSTSHKGYKCLAPSGRIFISKDVIFCENHFPY 421
>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
Length = 1455
Score = 320 bits (819), Expect = 7e-90
Identities = 154/359 (42%), Positives = 222/359 (61%), Gaps = 9/359 (2%)
Frame = -2
Query: 1093 VQDQAKGEVLLKGNVKDGLYSF---------CLASSKDPSTVSSHHQINXXXXXXXXXXX 941
V+DQ VL+ G V+DGLY+F + SK PS V+S
Sbjct: 463 VKDQVTQAVLMVGKVRDGLYAFDSSHLALRPTQSLSKSPSVVASSFSSKVCTTSL----- 517
Query: 940 XXXSMKLKNNANLELWHSRLGHAAFDVVKRVLKQCNIPYNSNEADPICSPCLVAKSHKLH 761
++ +LWH RLGH + +K VL +CN+ + + CS C + K H+
Sbjct: 518 ---------SSTFDLWHKRLGHPSAATIKNVLSKCNVAHINKMDSNFCSSCCLGKIHRFP 568
Query: 760 FSHSTFDNYELLDLIHTDLWGPAPIKSTNGYVYYVSFIDHYSRFTWLYLLKQKSDTTNAF 581
FS S + L+LIH DLWGP + S +GY YY+ F+D +SRF+W++LL+ KS+ F
Sbjct: 569 FSLSHTTYTKPLELIHLDLWGPTLVLSNSGYRYYIHFVDAFSRFSWIFLLRNKSEAIKTF 628
Query: 580 HHFKQLVETQFNRKIKSIQSDGGTEYKPLSKLFNEHGIIHKISCPYTPEQNGLAERKHRH 401
+FK VE QF+ KIKS+Q+D G E++ E+GI+H++SCP+T +QNG+AERKHR
Sbjct: 629 VNFKTQVELQFDLKIKSLQTDWGGEFRAFQSYLAENGIVHRVSCPHTQQQNGVAERKHRT 688
Query: 400 IVESGLSLLAASNLPAKYWDDAFSSAVFLLNRVPSRVLQFKTPLELATGRKPDYTSLRVF 221
IVE GL+LL ++LP K+WD++F + V+L NR+P+ +L K P+E+ PDY+ L+VF
Sbjct: 689 IVEHGLTLLHTASLPLKFWDESFRTVVYLSNRLPTAILHHKCPIEVLFKSIPDYSFLKVF 748
Query: 220 GCLCFPYLRPYNKHKLEFRSSPCTFLGYSSQFKGYKVMLPNHKILFTRHIVFDESKFPF 44
GC CFP LRPYN HKL++RS CTFLGYS + KGYK M N ++ + ++F+E+ FP+
Sbjct: 749 GCSCFPNLRPYNTHKLQYRSEECTFLGYSLKHKGYKCMSSNGRVYISHDVIFNETSFPY 807
Score = 112 bits (281), Expect = 8e-22
Identities = 73/200 (36%), Positives = 116/200 (58%), Gaps = 1/200 (0%)
Frame = -1
Query: 2132 ITVKLSENNHLIWRQQVLAAITGYGLEAFITGSTPIPEKYLEGSSNTQSDLNPEYVTWNR 1953
++VKL N LIW+QQ+++AI GYGL+ F+ + Q + +PE + +
Sbjct: 31 LSVKLDNKNFLIWKQQIVSAIRGYGLQKFVFSDDEV-----------QFNFSPEKMR-DL 78
Query: 1952 QDKLLASWLMSSLSEPILISTVGLSSSKEIWDALEINFTSQSKAKIMQQKLKLQNTRKGS 1773
+ +L S SS + I ++G S LE F SQ++AK Q K +LQ+T+KG
Sbjct: 79 EKQLRNS---SSGNNRINYCSLGFSHLFLSQYFLEQYFASQTRAKAKQFKTQLQHTKKGG 135
Query: 1772 LTMREYLNRIKVCCDNLAAAGEKMSDDNQIAHIIGGLGNEYDSVMVSIASRIEPCSLREV 1593
T+ EYL +IKVC D+LA+ G +S + + I+ GL N+Y+S + S+ R + S+ E+
Sbjct: 136 STIDEYLAKIKVCVDSLASVGVSLSTKDHVESILDGLPNDYESFVTSVILRNDDFSVEEI 195
Query: 1592 HALLLSFESRLE-SQESLNS 1536
ALL++ ESR+E + SL+S
Sbjct: 196 EALLMAHESRVEKNNNSLDS 215
Score = 61.6 bits (148), Expect = 4e-06
Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 12/96 (12%)
Frame = -1
Query: 1346 ACQICHRTNHTADKCFYRAD--LQYVPNKNNFNTGPSAN----------IASNSSFENEH 1203
ACQ+C + H +C+YR D Q N ++ N+ P A I ++ F +++
Sbjct: 309 ACQLCGKIGHVVAQCYYRFDHTFQVPQNLSSRNSSPRAYYSFSPQVNGVIPTSEVFSDDN 368
Query: 1202 EVWFPDSGATNHLTYDLENLSIANDFTGNDRVQMGN 1095
W+PDSGA+NH+T + ENL + +F G ++V +GN
Sbjct: 369 --WYPDSGASNHVTPNPENLMKSAEFAGQNQVHVGN 402
>gb|KYP42260.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 623
Score = 305 bits (780), Expect = 8e-90
Identities = 151/358 (42%), Positives = 213/358 (59%), Gaps = 7/358 (1%)
Frame = -2
Query: 1096 MVQDQAKGEVLLKGNVK-DGLYSF------CLASSKDPSTVSSHHQINXXXXXXXXXXXX 938
+V+ Q VLL+G++ DGLYSF C P ++ I
Sbjct: 33 LVKSQVDHSVLLEGHLTADGLYSFPHLSFSCCQPQHLPLSIKPSSSI--ALSTTCTSRVC 90
Query: 937 XXSMKLKNNANLELWHSRLGHAAFDVVKRVLKQCNIPYNSNEADPICSPCLVAKSHKLHF 758
+++ L LWH+RLGH F V++ VLK C IP ++ C C + KSH+L
Sbjct: 91 SDTVQSPTPTTLSLWHNRLGHPCFSVLQNVLKFCKIPVSNKNEVQFCVACCMGKSHRLPS 150
Query: 757 SHSTFDNYELLDLIHTDLWGPAPIKSTNGYVYYVSFIDHYSRFTWLYLLKQKSDTTNAFH 578
S ST L+L+ DLWGP P+ S+ GY YY+SF+D YSRFTW+Y LK KS+ F
Sbjct: 151 SSSTTVYSTPLELLFCDLWGPTPMLSSMGYHYYMSFVDAYSRFTWIYFLKNKSEALTIFK 210
Query: 577 HFKQLVETQFNRKIKSIQSDGGTEYKPLSKLFNEHGIIHKISCPYTPEQNGLAERKHRHI 398
F+ + + QFN KIKS QSD G E++P +++ GI H++ CP+T QNG+ ERKHRHI
Sbjct: 211 QFQAMAKLQFNHKIKSFQSDWGGEFRPFTQILTSLGITHRLICPHTHHQNGVVERKHRHI 270
Query: 397 VESGLSLLAASNLPAKYWDDAFSSAVFLLNRVPSRVLQFKTPLELATGRKPDYTSLRVFG 218
+E GL+LL+ + LP KYWD F + V+L+NR+PS P ++ + DYT ++VFG
Sbjct: 271 IEMGLTLLSQAFLPMKYWDHVFHTTVYLINRLPSLSHNKIVPYQVLYSKDLDYTFIKVFG 330
Query: 217 CLCFPYLRPYNKHKLEFRSSPCTFLGYSSQFKGYKVMLPNHKILFTRHIVFDESKFPF 44
C C+P L PYN +KL FRS+ C FLGYSS KGYK + N + ++ ++F+E +FP+
Sbjct: 331 CACYPLLTPYNTNKLHFRSTECVFLGYSSSHKGYKCLDTNGLLFISKDVIFNEQRFPY 388
>gb|KYP47921.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 330
Score = 295 bits (754), Expect = 1e-89
Identities = 129/271 (47%), Positives = 185/271 (68%)
Frame = -2
Query: 847 LKQCNIPYNSNEADPICSPCLVAKSHKLHFSHSTFDNYELLDLIHTDLWGPAPIKSTNGY 668
+ +CN+ +N+ +C C K H+L FS ST L +I++DLWGP+PI S+NG
Sbjct: 1 MSKCNLVVPNNKTFSVCKACCYGKIHRLSFSSSTTTFTAPLQMIYSDLWGPSPIPSSNGS 60
Query: 667 VYYVSFIDHYSRFTWLYLLKQKSDTTNAFHHFKQLVETQFNRKIKSIQSDGGTEYKPLSK 488
+YY++FID YS++TW+YLL+ KS F HFK ++E Q + KIK IQ+DGG EY +K
Sbjct: 61 MYYMNFIDAYSKYTWIYLLQHKSQALTCFIHFKNMIENQLDHKIKCIQTDGGKEYIAFTK 120
Query: 487 LFNEHGIIHKISCPYTPEQNGLAERKHRHIVESGLSLLAASNLPAKYWDDAFSSAVFLLN 308
EHGI+H ISCPY EQNG AERKH HI + GLS+LA +++P KYW +AF++ V ++N
Sbjct: 121 FLQEHGILHHISCPYIHEQNGNAERKHTHITKMGLSILAHASMPLKYWGEAFNTVVHIIN 180
Query: 307 RVPSRVLQFKTPLELATGRKPDYTSLRVFGCLCFPYLRPYNKHKLEFRSSPCTFLGYSSQ 128
R+P+ L F T +E + P Y L+VFG C+P+LRPYNK+K +F++S C FLGY+S
Sbjct: 181 RLPTPTLAFSTLIEKLFSKSPSYNDLKVFGSTCYPFLRPYNKNKFDFKTSECVFLGYNSS 240
Query: 127 FKGYKVMLPNHKILFTRHIVFDESKFPFINH 35
+KGY + +I +RH++F+E FPF ++
Sbjct: 241 YKGYMCLSSTGRIYISRHVIFNEFVFPFASN 271