BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia27_contig00003603
         (3520 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007210190.1| hypothetical protein PRUPE_ppa017790mg [Prun...  1157   0.0  
ref|XP_007051412.1| DNA/RNA polymerases superfamily protein [The...  1150   0.0  
ref|XP_007207232.1| hypothetical protein PRUPE_ppa026856mg [Prun...  1143   0.0  
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja...  1141   0.0  
gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]                1138   0.0  
gb|AAM94350.1| gag-pol polyprotein [Zea mays]                        1127   0.0  
gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japoni...  1125   0.0  
ref|XP_013746037.1| PREDICTED: uncharacterized protein LOC106448...  1116   0.0  
emb|CAN79321.1| hypothetical protein VITISV_018984 [Vitis vinifera]  1112   0.0  
gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]                1097   0.0  
ref|XP_013694892.1| PREDICTED: uncharacterized protein LOC106398...  1094   0.0  
ref|XP_013689613.1| PREDICTED: uncharacterized protein LOC106393...  1093   0.0  
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]                 1085   0.0  
gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]                 1083   0.0  
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa...  1082   0.0  
gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum...  1080   0.0  
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni...  1077   0.0  
ref|XP_013749392.1| PREDICTED: uncharacterized protein LOC106451...  1072   0.0  
ref|XP_007220740.1| hypothetical protein PRUPE_ppa023598mg [Prun...  1072   0.0  
dbj|BAA89466.1| gag-pol polyprotein, partial [Oryza sativa Indic...  1070   0.0  

>ref|XP_007210190.1| hypothetical protein PRUPE_ppa017790mg [Prunus persica]
            gi|462405925|gb|EMJ11389.1| hypothetical protein
            PRUPE_ppa017790mg [Prunus persica]
          Length = 1485

 Score = 1157 bits (2993), Expect = 0.0
 Identities = 585/1152 (50%), Positives = 773/1152 (67%), Gaps = 16/1152 (1%)
 Frame = +3

Query: 102  CFNCGDPSHLQSACPKRASTRALYVDDVCDADFSSSPVYDDDISAQPPEEFL--HGDVGQ 275
            C+ C  P H  + CP+    +A ++++  D D  +  V ++D +     EF    G    
Sbjct: 351  CYRCQKPGHRSNVCPELK--QANFIEEA-DEDEENDEVGENDYAGA---EFAVEEGMEKI 404

Query: 276  LLVLQRVCLTPRREDDDSMQRHKLFESTCTVQGKICRFIIDSGSCENVVAADAIQKLNLS 455
             LVLQRV L PR E     QRH +F S C+++ K+C  I+D+GSCEN V+   ++ L LS
Sbjct: 405  TLVLQRVLLAPREEG----QRHSIFRSLCSIKNKVCDVIVDNGSCENFVSKKLVEYLQLS 460

Query: 456  TEPHPTPYSLAWLQRDNEITVTRRVLLTFSIGGKYTDSVWCDVVPMDACHLLLGRPWQYD 635
            TEPH +PYSL W+++   + V     +  SIG  Y D V CDV+ MDACH+LLGRPWQ+D
Sbjct: 461  TEPHVSPYSLGWVKKGPSVRVAETCRVPLSIGKHYRDEVLCDVIDMDACHILLGRPWQFD 520

Query: 636  RGVIHDGRQNTYSFLFHGVKVTLLXXXXXXXXTDAHPRVLSISYSAFARAMDASSFVLLL 815
                  GR N   F ++  K+ +         T   P   S+          +SSF+ L+
Sbjct: 521  VDATFKGRDNVILFSWNNRKIAM---------TTTQPSKPSVEVKT-----RSSSFLTLI 566

Query: 816  VS--------RDVSESPNVPSVVAPLLSEFADIFPDELPPGLPPLRMIQHQIDFIPGAKL 971
             +        ++     ++P  V  +LS+F ++F + LP  LPP+R IQH+ID +PGA L
Sbjct: 567  SNEQELNEAVKEAEGEGDIPQDVQQILSQFQELFSENLPNELPPMRDIQHRIDLVPGASL 626

Query: 972  PNRPHYRMSPSEHEELRRQIEELLHRGHIRESLSPCAVPALLIPKKDGAWRMCVDSRALN 1151
             N PHYRMSP E++ LR QIEELL +G IRESLSPCAVP LL+PKKD  WRMCVDSRA+N
Sbjct: 627  QNLPHYRMSPKENDILREQIEELLRKGFIRESLSPCAVPVLLVPKKDKTWRMCVDSRAIN 686

Query: 1152 KITVRYSFPIPRLDDLLDQLGGATVFSKLDLKSGYHQIRIRPGDEWKTAFKTREGLFEWL 1331
            KITV+Y FPIPRL+D+LD L G+ VFSK+DL+SGYHQIRIRPGDEWKTAFK+++GLFEWL
Sbjct: 687  KITVKYRFPIPRLEDMLDVLSGSKVFSKIDLRSGYHQIRIRPGDEWKTAFKSKDGLFEWL 746

Query: 1332 VMPFGLSNAPSTFMRIMNQTLRPLIGSCVVVYFDDILVYSKSVHDHLAHLRAVLSILRTE 1511
            VMPFGLSN PSTFMR+MNQ LRP IGS VVVYFDDIL+YS +  +HL HLR VL +LR  
Sbjct: 747  VMPFGLSNTPSTFMRLMNQVLRPFIGSFVVVYFDDILIYSTTKEEHLVHLRQVLDVLREN 806

Query: 1512 CFYAAPSKCVFLTENVLFLGYRVSATGIGVDDAKIAAIQDWPVPTTLTEVRSFHGLASFY 1691
              +    KC F T  +LFLG+ V   GI VDD KI AI DWP P T++EVRSFHGLA+FY
Sbjct: 807  KLFVNLKKCTFCTNKLLFLGFVVGEHGIQVDDEKIKAILDWPAPKTVSEVRSFHGLATFY 866

Query: 1692 RRFIPHFSTIMAPITDLMHGKSFSWPTQAATAFTDIKHKLTHAPLLALPDFSVPFELHSD 1871
            RRF+ HFS+I+APIT+ +    FSW  +   +F DIK KL  AP+LALP+F   FE+  D
Sbjct: 867  RRFVRHFSSIVAPITECLKKGRFSWGEEQERSFADIKEKLCTAPVLALPNFEKVFEVECD 926

Query: 1872 ASKVGIGAVLSQHGHPIAYFSEKLNATRGRYSTYDIEFYAVVRAIRHWRHYLFHREFILY 2051
            AS VG+GAVLSQ   P+A+FSEKL+  R ++STYD EFYAVVRA++ W HYL  +EF+L+
Sbjct: 927  ASGVGVGAVLSQDKRPVAFFSEKLSDARQKWSTYDQEFYAVVRALKQWEHYLIQKEFVLF 986

Query: 2052 TDHEALKHINSQDSLSARHAAWSAFLQQFTFVVKHQSGITNKVADALSRRHSLLVDMRIE 2231
            TDH+ALK+INSQ ++   HA W  FLQ+F+FV+KH SG TN+VADALSRR SLL+ +  E
Sbjct: 987  TDHQALKYINSQKNIDKMHARWVTFLQKFSFVIKHTSGKTNRVADALSRRASLLITLTQE 1046

Query: 2232 VPGFDSFRELYATDSFFKIILSSLARGD-ASDFILHDGFLFKGICLCVPMCSLRLRLVAE 2408
            V GF+  +ELY  D+ F  I +     +  +D+ L++G+LFKG  LC+P+ SLR +L+ +
Sbjct: 1047 VVGFECLKELYEGDADFGEIWTKCTNQEPMADYFLNEGYLFKGNQLCIPVSSLREKLIRD 1106

Query: 2409 LHS---TGHVGRDRSIDLVRRQYFWPTLRRDVSRFVARCRICQVSKGTSTNAGLYRPLPI 2579
            LH    +GH+GRD++I  +  +++WP L+RDV   V +C  CQ SKG   N GLY PLP+
Sbjct: 1107 LHGGGLSGHLGRDKTIAGMEERFYWPQLKRDVGTIVRKCYTCQTSKGQVQNTGLYMPLPV 1166

Query: 2580 PSQPWGALSMDFVLGLPRTQRGHDSIFVVVDRFSKMVHFIPCKRSADAVHVAQLFFREVY 2759
            P+  W  L+MDFVLGLPRTQRG DS+FVVVDRFSKM HFI C+++ADA ++A+LFFREV 
Sbjct: 1167 PNDIWQDLAMDFVLGLPRTQRGVDSVFVVVDRFSKMAHFIACRKTADASNIAKLFFREVV 1226

Query: 2760 RLHGLPVSIVSDRDTRFLSHFWRSLWSMANTELHFSSAYHPQTDGQTEVVNRSLGNLLRC 2939
            RLHG+P SI SDRDT+FLSHFW +LW +  T L+ SS  HPQTDGQTEV NR+LGN++R 
Sbjct: 1227 RLHGVPTSITSDRDTKFLSHFWITLWRLFGTTLNRSSTAHPQTDGQTEVTNRTLGNMVRS 1286

Query: 2940 LVGDTPRAWDIKLSQAEFAHNLALNRSTGLSPFQVVYGFLPRAPVDLLTLPSRTREDRRA 3119
            + G+ P+ WD  L Q EFA+N A++ +TG SPF +VY  +P   VDL+ LP   +    A
Sbjct: 1287 VCGEKPKQWDYALPQVEFAYNSAVHSATGKSPFSIVYTAMPNHVVDLVKLPRGQQTSVAA 1346

Query: 3120 TDFMADLCQVHAATRAKLVDTTAKYKRAADTHRRQLEFSVGDYVWAVLTKDRYPAHDYHK 3299
             +   ++  V    + KL  T AKYK AAD HRR   F  GD V   L K+R+P   Y K
Sbjct: 1347 KNLAEEVVAVRDEVKQKLEQTNAKYKAAADKHRRVKVFQEGDSVMIFLRKERFPVGTYSK 1406

Query: 3300 LSARKIGPVEILEKINPNAYRLRLPNHLRTSDVFNVCHLIPYHGENSFGDETD--FDSRA 3473
            L  +K GP ++L++IN NAY + LP+ +  S++FNV  L  +  +   G + +   D  A
Sbjct: 1407 LKPKKYGPYKVLKRINDNAYVIELPDSMGISNIFNVADLYEFREDEVEGTDVEQMADFIA 1466

Query: 3474 NHLQEGKNDGVE 3509
              L++G++  ++
Sbjct: 1467 VELEKGRSGNMQ 1478


>ref|XP_007051412.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
            gi|508703673|gb|EOX95569.1| DNA/RNA polymerases
            superfamily protein [Theobroma cacao]
          Length = 1452

 Score = 1150 bits (2974), Expect = 0.0
 Identities = 571/1154 (49%), Positives = 771/1154 (66%), Gaps = 15/1154 (1%)
 Frame = +3

Query: 102  CFNCGDPSHLQSACPKRASTRALYVDDVCDADFSSSPVYDDDISAQPPEEFLHGDVGQLL 281
            CF CG+  H   ACP+R    A   +++        PVYD+    +  E  ++   G+ L
Sbjct: 252  CFTCGEKGHTSFACPQRKVNLAELGEEL-------EPVYDE-YKEEVEEIDVYPAQGESL 303

Query: 282  VLQRVCLTPRREDDDSMQRHKLFESTCTVQGKICRFIIDSGSCENVVAADAIQKLNLSTE 461
            V++R+  T   E+ +  +R  +F +    +GK+C  +ID GS EN+++ +A+ KL L T 
Sbjct: 304  VVRRIMTTTVNEEAEDWKRRSIFRTRVVCEGKVCDLVIDGGSMENIISKEAVNKLKLPTN 363

Query: 462  PHPTPYSLAWLQRDNEITVTRRVLLTFSIGGKYTDSVWCDVVPMDACHLLLGRPWQYDRG 641
             HP PY + WL++ +E+ VT + L+ F++G    D   CDVVPMD  H+L+GRPW YD  
Sbjct: 364  KHPYPYKIGWLKKGHEVPVTTQCLVKFTMGDNSDDEALCDVVPMDVGHILVGRPWLYDHD 423

Query: 642  VIHDGRQNTYSFLFHGVKVTLLXXXXXXXXTDAHPRVLSISYSAFARAMDASS------F 803
            ++H  + NTYSF  +  + TL         +  H ++  I+    A   +A        +
Sbjct: 424  MVHKTKPNTYSFYKNNKRYTLYPLREETKKSANH-KISKITRYLSAENFEAEGSEMGIMY 482

Query: 804  VLL---LVSRDVSESPNVPSVVAPLLSEFADIFPDELPPGLPPLRMIQHQIDFIPGAKLP 974
             L+   L S  +S+SP  P+ +  LL EF ++F ++LP  LPPLR IQH ID +PGA LP
Sbjct: 483  ALVTKHLKSDQMSKSPQYPTEIQQLLKEFGELFNEDLPKSLPPLRSIQHAIDLVPGAALP 542

Query: 975  NRPHYRMSPSEHEELRRQIEELLHRGHIRESLSPCAVPALLIPKKDGAWRMCVDSRALNK 1154
            N P YRM P +  E++RQ+EEL  +G +RES SPCA PALL PKKDG+WRMCVDSRA+NK
Sbjct: 543  NLPAYRMPPMQRAEVQRQVEELFEKGLVRESKSPCACPALLAPKKDGSWRMCVDSRAINK 602

Query: 1155 ITVRYSFPIPRLDDLLDQLGGATVFSKLDLKSGYHQIRIRPGDEWKTAFKTREGLFEWLV 1334
            IT++Y FPIPRLD++LDQL G+ VFSK+DLKSGYHQIR+R GDEWKTAFKT +GLFEWLV
Sbjct: 603  ITIKYRFPIPRLDEMLDQLVGSRVFSKIDLKSGYHQIRMRDGDEWKTAFKTPDGLFEWLV 662

Query: 1335 MPFGLSNAPSTFMRIMNQTLRPLIGSCVVVYFDDILVYSKSVHDHLAHLRAVLSILRTEC 1514
            MPFGLSNAPSTFMR+M + L+P + S VVVYFDDIL+YS +   HL HLR VL +L+ E 
Sbjct: 663  MPFGLSNAPSTFMRVMAEVLKPFLNSFVVVYFDDILIYSHTKEKHLKHLRQVLEVLQKEQ 722

Query: 1515 FYAAPSKCVFLTENVLFLGYRVSATGIGVDDAKIAAIQDWPVPTTLTEVRSFHGLASFYR 1694
             Y    KC F+   V+FLG+ VSA G+  D  KI AI +WP PT++ EVRSFHGLASFYR
Sbjct: 723  LYINLKKCSFMQPEVVFLGFIVSAEGLKPDPEKIRAISEWPAPTSIKEVRSFHGLASFYR 782

Query: 1695 RFIPHFSTIMAPITDLMHGKSFSWPTQAATAFTDIKHKLTHAPLLALPDFSVPFELHSDA 1874
            RFI +FS+IM+PIT+ +    F W   A  AF  +K  +T AP+LALPDF   F +  DA
Sbjct: 783  RFIRNFSSIMSPITESLKKDGFEWSHSAQKAFERVKALMTEAPVLALPDFEKLFVVECDA 842

Query: 1875 SKVGIGAVLSQHGHPIAYFSEKLNATRGRYSTYDIEFYAVVRAIRHWRHYLFHREFILYT 2054
            S VGIGAVLSQ G PI +FSEKL  +R RYSTYD+EFYA+VRAIRHW+HYL +REF +Y+
Sbjct: 843  SYVGIGAVLSQDGRPIEFFSEKLTDSRRRYSTYDLEFYALVRAIRHWQHYLAYREFAVYS 902

Query: 2055 DHEALKHINSQDSLSARHAAWSAFLQQFTFVVKHQSGITNKVADALSRRHSLLVDMRIEV 2234
            DH+AL++++SQ  LS +HA WS+FL +F F +K++SG +N VADALSRR  +L  M  +V
Sbjct: 903  DHQALRYLHSQKKLSNQHAKWSSFLNEFNFSLKYKSGQSNTVADALSRRCKMLSVMSTQV 962

Query: 2235 PGFDSFRELYATDSFFKIILSSL---ARGDASDFILHDGFLFKGICLCVPMCSLRLRLVA 2405
             GF+  +  Y++DS+F  I++ L    + +   + LH+ +LFKG  LC+P  SLR +++ 
Sbjct: 963  TGFEELKNQYSSDSYFSKIIADLQGSLQAENLPYRLHEDYLFKGNQLCIPEGSLREQIIR 1022

Query: 2406 ELHST---GHVGRDRSIDLVRRQYFWPTLRRDVSRFVARCRICQVSKGTSTNAGLYRPLP 2576
            ELH     GH GRD+++ +V  +Y+WP +RRDV R V RC  C   KG++ N GLY PLP
Sbjct: 1023 ELHGNGLGGHFGRDKTLVMVADRYYWPKMRRDVERLVKRCPACLFGKGSAQNTGLYVPLP 1082

Query: 2577 IPSQPWGALSMDFVLGLPRTQRGHDSIFVVVDRFSKMVHFIPCKRSADAVHVAQLFFREV 2756
             P  PW  LSMDFVLGLP+T +G DSIFVVVDRFSKM HFIPC R++DA H+A+LFFRE+
Sbjct: 1083 EPDAPWIHLSMDFVLGLPKTTKGFDSIFVVVDRFSKMAHFIPCFRTSDATHIAELFFREI 1142

Query: 2757 YRLHGLPVSIVSDRDTRFLSHFWRSLWSMANTELHFSSAYHPQTDGQTEVVNRSLGNLLR 2936
              LHG+P SIVSDR  +F+ +FWR+LW    TEL +SS  HPQTDGQTEVVNRSLGN+LR
Sbjct: 1143 VILHGIPTSIVSDRHVKFMGYFWRTLWRKFGTELKYSSTCHPQTDGQTEVVNRSLGNMLR 1202

Query: 2937 CLVGDTPRAWDIKLSQAEFAHNLALNRSTGLSPFQVVYGFLPRAPVDLLTLPSRTREDRR 3116
            CL+ + P+ WD+ + QAEFA+N ++NRS   +PF+  YG  P+  +DL+ LP   R    
Sbjct: 1203 CLIQNNPKTWDLVIPQAEFAYNNSVNRSIKKTPFEAAYGLKPQHVLDLVPLPQEARVSNE 1262

Query: 3117 ATDFMADLCQVHAATRAKLVDTTAKYKRAADTHRRQLEFSVGDYVWAVLTKDRYPAHDYH 3296
               F   + ++H   +A L  + A+Y   A+ HRR+ EF  GD V   L ++R+P   YH
Sbjct: 1263 GELFADQIRKIHEEVKAALKASNAEYSFTANQHRRKQEFEEGDQVLVHLRQERFPKGTYH 1322

Query: 3297 KLSARKIGPVEILEKINPNAYRLRLPNHLRTSDVFNVCHLIPYHGENSFGDETDFDSRAN 3476
            KL +RK GP ++L+KI+ NAY + LP  L+ + +FN+  L P+ G +  G  +  D++  
Sbjct: 1323 KLKSRKFGPCKVLKKISSNAYLIELPPELQINPIFNILDLYPFDGCD--GTASTIDAQIQ 1380

Query: 3477 HLQEGKNDGVETAL 3518
            HL   K + +E  L
Sbjct: 1381 HLPIAKVEVIEDVL 1394


>ref|XP_007207232.1| hypothetical protein PRUPE_ppa026856mg [Prunus persica]
            gi|462402874|gb|EMJ08431.1| hypothetical protein
            PRUPE_ppa026856mg [Prunus persica]
          Length = 1493

 Score = 1143 bits (2956), Expect = 0.0
 Identities = 580/1144 (50%), Positives = 760/1144 (66%), Gaps = 8/1144 (0%)
 Frame = +3

Query: 102  CFNCGDPSHLQSACPKRASTRALYVDDVCDADFSSSPVYDDDISAQPPEEFL--HGDVGQ 275
            C+ C  P H  + CP+R   +A ++++  D D     V ++D +     EF    G    
Sbjct: 362  CYRCQKPGHRSNVCPERK--QANFIEEA-DEDEEKDEVGENDYAGA---EFAVEEGIEKI 415

Query: 276  LLVLQRVCLTPRREDDDSMQRHKLFESTCTVQGKICRFIIDSGSCENVVAADAIQKLNLS 455
             LVLQRV L P+ E     QRH +F S C+++ K+C  I+D+GSCEN V+   ++ L LS
Sbjct: 416  TLVLQRVLLAPKEEG----QRHNIFRSLCSIKNKVCDVIVDNGSCENFVSKKLVEYLQLS 471

Query: 456  TEPHPTPYSLAWLQRDNEITVTRRVLLTFSIGGKYTDSVWCDVVPMDACHLLLGRPWQYD 635
            TEPH +PYSL W+++   + V     +  SIG  Y D V CDV+ MDACH+LLGRPWQ+D
Sbjct: 472  TEPHVSPYSLGWVKKGPSVRVAETCRVPLSIGKHYRDDVLCDVIDMDACHILLGRPWQFD 531

Query: 636  RGVIHDGRQNTYSFLFHGVKVTLLXXXXXXXXTDAHPRVLSISYSAFARAMDASSFVLLL 815
                  GR N   F ++  K+ +         T    R   +  S+F   +     +   
Sbjct: 532  VDATFKGRDNVILFSWNNRKIAMA--------TTQPSRKQELRSSSFLTLISNEQELNEA 583

Query: 816  VSRDVSESPNVPSVVAPLLSEFADIFPDELPPGLPPLRMIQHQIDFIPGAKLPNRPHYRM 995
            V     E  ++P  V  +LS+F ++  + LP  LPP+R IQH+ID + GA LPN PHYRM
Sbjct: 584  VKEAEGEG-DIPQDVQQILSQFQELLSENLPNELPPMRDIQHRIDLVHGASLPNLPHYRM 642

Query: 996  SPSEHEELRRQIEELLHRGHIRESLSPCAVPALLIPKKDGAWRMCVDSRALNKITVRYSF 1175
            SP E++ LR QIEELL +G IRESLSPCAVP LL+PKKD  WRMCVDSRA+NKI V+Y F
Sbjct: 643  SPKENDILREQIEELLRKGFIRESLSPCAVPVLLVPKKDKTWRMCVDSRAVNKIKVKYRF 702

Query: 1176 PIPRLDDLLDQLGGATVFSKLDLKSGYHQIRIRPGDEWKTAFKTREGLFEWLVMPFGLSN 1355
             IPRL+D+LD L G+ VFSK+DL+SGYHQIRIRPGDEWKTAFK+++GLFEWLVMPFGLSN
Sbjct: 703  SIPRLEDILDVLSGSKVFSKIDLRSGYHQIRIRPGDEWKTAFKSKDGLFEWLVMPFGLSN 762

Query: 1356 APSTFMRIMNQTLRPLIGSCVVVYFDDILVYSKSVHDHLAHLRAVLSILRTECFYAAPSK 1535
            APSTFMR+MNQ LRP IGS VVVYFDDIL+YS +  +HL HLR VL +LR    Y    K
Sbjct: 763  APSTFMRLMNQVLRPFIGSFVVVYFDDILIYSTTKEEHLVHLRQVLDVLRENKLYVNLKK 822

Query: 1536 CVFLTENVLFLGYRVSATGIGVDDAKIAAIQDWPVPTTLTEVRSFHGLASFYRRFIPHFS 1715
            C F T  +LFLG+ V   GI VDD KI AI DWP P T++EVRSFHGLA+FY RF+ HFS
Sbjct: 823  CTFCTNKLLFLGFVVGENGIQVDDEKIKAILDWPAPKTVSEVRSFHGLATFYMRFVRHFS 882

Query: 1716 TIMAPITDLMHGKSFSWPTQAATAFTDIKHKLTHAPLLALPDFSVPFELHSDASKVGIGA 1895
            +I APIT+ +    FSW  +   +F DIK KL  AP+LALP+F   FE+  DAS VG+GA
Sbjct: 883  SIAAPITECLKKGRFSWGEEQERSFADIKEKLCTAPVLALPNFEKVFEVECDASGVGVGA 942

Query: 1896 VLSQHGHPIAYFSEKLNATRGRYSTYDIEFYAVVRAIRHWRHYLFHREFILYTDHEALKH 2075
            VL Q   P+A+FSEKL+  R ++STYD EFYAVVRA++ W HYL  +EF+L+TDH+ALK+
Sbjct: 943  VLLQDKRPVAFFSEKLSDARQKWSTYDQEFYAVVRALKQWEHYLIQKEFVLFTDHQALKY 1002

Query: 2076 INSQDSLSARHAAWSAFLQQFTFVVKHQSGITNKVADALSRRHSLLVDMRIEVPGFDSFR 2255
            INSQ ++   HA W  FLQ+F+FV+KH SG TN+VADALSRR SLL+ +  EV GF+  +
Sbjct: 1003 INSQKNIDKMHARWVTFLQKFSFVIKHTSGKTNRVADALSRRASLLITLTQEVVGFECLK 1062

Query: 2256 ELYATDSFFKIILSSLARGD-ASDFILHDGFLFKGICLCVPMCSLRLRLVAELHS---TG 2423
            ELY  D  F+ I +     +  +D+ L +G+LFKG  LC+P+ SLR +L+ +LH    +G
Sbjct: 1063 ELYEGDDDFREIWTKCTNQEPMTDYFLTEGYLFKGNQLCIPVSSLREKLIRDLHGGGLSG 1122

Query: 2424 HVGRDRSIDLVRRQYFWPTLRRDVSRFVARCRICQVSKGTSTNAGLYRPLPIPSQPWGAL 2603
            H+GRD++I  +  +++WP L+RDV   V +C  CQ SKG   N GLY PLP+P+  W  L
Sbjct: 1123 HLGRDKTIAGMEERFYWPQLKRDVGTIVRKCYTCQTSKGQVQNTGLYMPLPVPNDIWQDL 1182

Query: 2604 SMDFVLGLPRTQRGHDSIFVVVDRFSKMVHFIPCKRSADAVHVAQLFFREVYRLHGLPVS 2783
            +MDFVLG PRTQR  DS+FVV DRFSKM HFI CK++ADA ++A+LFFREV RLHG+P S
Sbjct: 1183 AMDFVLGFPRTQRRVDSVFVVADRFSKMAHFIACKKTADASNIAKLFFREVVRLHGVPTS 1242

Query: 2784 IVSDRDTRFLSHFWRSLWSMANTELHFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDTPRA 2963
            I SDRDT+FLSHFW +LW +  T L+ SS  HPQTDGQTEV NR+LGN++R + G+ P+ 
Sbjct: 1243 ITSDRDTKFLSHFWITLWRLFGTTLNRSSTAHPQTDGQTEVTNRTLGNMVRSVCGEKPKQ 1302

Query: 2964 WDIKLSQAEFAHNLALNRSTGLSPFQVVYGFLPRAPVDLLTLPSRTREDRRATDFMADLC 3143
            WD  L Q EFA+N A++ +TG SPF +VY   P   VDL+ LP   +    A +   ++ 
Sbjct: 1303 WDYALPQMEFAYNSAVHSATGKSPFSIVYTATPNHVVDLVKLPRGQQTSVAAKNLAEEVV 1362

Query: 3144 QVHAATRAKLVDTTAKYKRAADTHRRQLEFSVGDYVWAVLTKDRYPAHDYHKLSARKIGP 3323
             V    + KL  T AKYK AAD HRR   F  GD V   L K+R+PA  Y KL  +K GP
Sbjct: 1363 AVRDEVKQKLEQTNAKYKAAADRHRRVKVFQEGDSVMVFLRKERFPAGTYSKLKPKKYGP 1422

Query: 3324 VEILEKINPNAYRLRLPNHLRTSDVFNVCHLIPYHGENSFGDETD--FDSRANHLQEGKN 3497
             ++L++IN NAY + LP+ +  S++FNV  L  +  +   G + +   D  A  L++G++
Sbjct: 1423 YKVLKRINDNAYDIELPDSMGISNIFNVADLYEFREDEVEGTDVEQMTDFIAVELEKGRS 1482

Query: 3498 DGVE 3509
              ++
Sbjct: 1483 GNMQ 1486


>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
            gi|31431012|gb|AAP52850.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 2447

 Score = 1141 bits (2951), Expect = 0.0
 Identities = 584/1182 (49%), Positives = 772/1182 (65%), Gaps = 49/1182 (4%)
 Frame = +3

Query: 102  CFNCGDPSHLQSACPKRASTRALYVDDVCDADFSSSPVYDDDISA---------QPPEEF 254
            C  C    H+Q  CP   S R L V +  D ++SS+  +DDD  A         +PPEE 
Sbjct: 392  CHRCKGFGHVQRDCP---SKRVLVVKN--DGEYSSASDFDDDTLALLAADHADNEPPEEH 446

Query: 255  L---HGDVGQLLVLQRVCLTPRREDDDSMQRHKLFESTCTVQGKICRFIIDSGSCENVVA 425
            +     D  + L++QRV L+ + E  +  QRH LF++ C V+ + CR IID GSC N+ +
Sbjct: 447  IGAAFADHYESLIVQRV-LSAQMEKAEQNQRHTLFQTKCVVKERCCRMIIDGGSCNNLAS 505

Query: 426  ADAIQKLNLSTEPHPTPYSLAWLQRDNEITVTRRVLLTFSIGGKYTDSVWCDVVPMDACH 605
            ++ ++KL LST+PHP PY + WL    +  VT+ V + F+I G Y D V CDVVPM AC+
Sbjct: 506  SEMVEKLALSTKPHPHPYYIQWLNNSGKAKVTKLVHINFAI-GNYHDVVECDVVPMQACN 564

Query: 606  LLLGRPWQYDRGVIHDGRQNTYSFLFHGVKVTLLXXXXXXXXTD---------------- 737
            +LLGRPWQ+DR  +H GR N YSFL+H  K+ L          D                
Sbjct: 565  ILLGRPWQFDRDSMHHGRSNQYSFLYHDKKIVLHSMSPEDILRDDVAKAAKSKCESDKKA 624

Query: 738  -----------AHPRVLSISYSAFARAMDASSFVLLLVSRDVSES-----PNVPSVVAPL 869
                         P+ L  + S     + + S    LV +D   S      ++P  VA +
Sbjct: 625  QSDGKKPETINLKPKCLLATKSDINELIASPSVAYALVCKDALISLHDMQHSLPPAVANI 684

Query: 870  LSEFADIFPDELPPGLPPLRMIQHQIDFIPGAKLPNRPHYRMSPSEHEELRRQIEELLHR 1049
            L E++D+FP E+PPGLPP+R I+HQID IPGA LPNR  YR +P E +E++RQ+ ELL +
Sbjct: 685  LQEYSDVFPKEVPPGLPPVRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLDK 744

Query: 1050 GHIRESLSPCAVPALLIPKKDGAWRMCVDSRALNKITVRYSFPIPRLDDLLDQLGGATVF 1229
            G++RESLSPCAVP +L+PKKDG+WRMCVD RA+N IT+RY  PIPRLDD+LD+L G+ VF
Sbjct: 745  GYVRESLSPCAVPVILVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSIVF 804

Query: 1230 SKLDLKSGYHQIRIRPGDEWKTAFKTREGLFEWLVMPFGLSNAPSTFMRIMNQTLRPLIG 1409
            SK+DL+SGYHQIR++ GDEWKTAFKT+ GL+EWLVMPFGL+NAPSTFMR+MN+ LRP IG
Sbjct: 805  SKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFIG 864

Query: 1410 SCVVVYFDDILVYSKSVHDHLAHLRAVLSILRTECFYAAPSKCVFLTENVLFLGYRVSAT 1589
              VVVYFDDIL+YSKS+ +H  HLRAV + LR    +    KC F T+ V FLGY V+  
Sbjct: 865  KFVVVYFDDILIYSKSMGEHFNHLRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQ 924

Query: 1590 GIGVDDAKIAAIQDWPVPTTLTEVRSFHGLASFYRRFIPHFSTIMAPITDL-MHGKSFSW 1766
            GI VD AK+ AIQ WP P T+++VRSF GLA FYRRF+  FSTI AP+  L   G  F+W
Sbjct: 925  GIEVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFVQDFSTIAAPLNVLTKKGVPFTW 984

Query: 1767 PTQAATAFTDIKHKLTHAPLLALPDFSVPFELHSDASKVGIGAVLSQHGHPIAYFSEKLN 1946
             T    AF  +K KLTHAPLL LPDF+  FEL  DAS +G+G VL Q G P+AYFSEKL+
Sbjct: 985  GTSQENAFHMLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLS 1044

Query: 1947 ATRGRYSTYDIEFYAVVRAIRHWRHYLFHREFILYTDHEALKHINSQDSLSARHAAWSAF 2126
                 YSTYD E YA+VR +  W+HYL+ +EF++++DHE+LKHI SQ  L+ RHA W  F
Sbjct: 1045 GPVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQGKLNRRHAKWVEF 1104

Query: 2127 LQQFTFVVKHQSGITNKVADALSRRHSLLVDMRIEVPGFDSFRELYATDSFFKIILSSLA 2306
            ++ F +V+KH+ G  N +ADALSRR++LL  +  ++ G ++ ++ YA D+ F  +L    
Sbjct: 1105 IESFPYVIKHKKGKENIIADALSRRYTLLTQLDYKIFGLETIKDQYAHDADFNDVLLHCK 1164

Query: 2307 RGDA-SDFILHDGFLFKGICLCVPMCSLRLRLVAELHS---TGHVGRDRSIDLVRRQYFW 2474
             G   + F+++DGF+F+   LC+P  S+RL L+ E H     GH G  ++ D++   +FW
Sbjct: 1165 DGRTWNKFVINDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHFGAKKTHDILASHFFW 1224

Query: 2475 PTLRRDVSRFVARCRICQVSKGTSTNAGLYRPLPIPSQPWGALSMDFVLGLPRTQRGHDS 2654
            P +RRDV RFVARC  CQ +K      GLY PLP+P+ PW  +SMDFVLGLPRT+RG DS
Sbjct: 1225 PQMRRDVGRFVARCATCQKAKSRLHPHGLYMPLPVPTVPWEDISMDFVLGLPRTKRGRDS 1284

Query: 2655 IFVVVDRFSKMVHFIPCKRSADAVHVAQLFFREVYRLHGLPVSIVSDRDTRFLSHFWRSL 2834
            IFVVVDRFSKM HFIPC ++ DA H+A LFFRE+ RLHG+P +IVSDRDT+FLSHFWR+L
Sbjct: 1285 IFVVVDRFSKMAHFIPCHKTDDASHIADLFFREIVRLHGVPNTIVSDRDTKFLSHFWRTL 1344

Query: 2835 WSMANTELHFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDTPRAWDIKLSQAEFAHNLALN 3014
            W+   T+L FS+  HPQTDGQTEVVNR+L  +LR ++    + W+  L   EFA+N +L+
Sbjct: 1345 WAKLGTKLLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEECLPHIEFAYNRSLH 1404

Query: 3015 RSTGLSPFQVVYGFLPRAPVDLLTLPSRTREDRRATDFMADLCQVHAATRAKLVDTTAKY 3194
             +T + PFQ+VYG LPRAP+DL+ LPS  + +  A      + ++H  T+  +    AKY
Sbjct: 1405 STTKMCPFQIVYGLLPRAPIDLMPLPSSEKLNFDAKQRAELMLKLHETTKENIERMNAKY 1464

Query: 3195 KRAADTHRRQLEFSVGDYVWAVLTKDRYPAHDYHKLSARKIGPVEILEKINPNAYRLRLP 3374
            K A D  RR+L F  GD VW  L K+R+P     KL  R  GP ++L KIN NAY++ LP
Sbjct: 1465 KFAGDKGRRELTFEPGDLVWLHLRKERFPDLRKSKLMPRADGPFKVLAKINENAYKIDLP 1524

Query: 3375 NHLRTSDVFNVCHLIPYHGENSFGDETDFDSRANHLQEGKND 3500
                 S  FNV  L PY      G+E + +SR   +QEG++D
Sbjct: 1525 ADFGVSPTFNVADLKPY-----LGEEDELESRTTQMQEGEDD 1561



 Score =  478 bits (1229), Expect = e-139
 Identities = 281/741 (37%), Positives = 407/741 (54%), Gaps = 40/741 (5%)
 Frame = +3

Query: 1314 GLFEWLVMPFGLSNAPSTFMRIMNQTLRPLIGSCVVVYFDDILVYSKSVHDHLAHLRAVL 1493
            GL+E+ VM FGL+NAP+ FM +MN+     +   VVV+ DDILVYS+S  DH  HLR VL
Sbjct: 1625 GLYEFTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILVYSQSEEDHQHHLRLVL 1684

Query: 1494 SILRTECFYAAPSKCVFLTENVLFLGYRVSATGIGVDDAKIAAIQDWPVPTTLTEVRSFH 1673
              LR    YA  SKC F    V FLG+ +SA G+ VD   + A+ DW  P T+T++RSF 
Sbjct: 1685 GKLREHQLYAKLSKCEFWLSEVKFLGHVISAKGVAVDPETVTAVTDWKQPKTVTQIRSFL 1744

Query: 1674 GLASFYRRFIPHFSTIMAPITDLM-HGKSFSWPTQAATAFTDIKHKLTHAPLLALPDFSV 1850
            GLA +YRRFI +FS I  P+T L+   + F W  Q   AF  +K KL  +P+L LPD   
Sbjct: 1745 GLAGYYRRFIENFSKIARPMTQLLKKEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDTRK 1804

Query: 1851 PFELHSDASKVGIGAVLSQHGHPIAYFSEKLNATRGRYSTYDIEFYAVVRAIRHWRHYLF 2030
             F ++ DAS  G+G VL Q GH +AY S +L    G Y T+D+E  AVV A++ WRHYL 
Sbjct: 1805 DFMVYCDASPQGLGCVLMQEGHVVAYASRQLWPHEGNYPTHDLELAAVVHALKIWRHYLI 1864

Query: 2031 HREFILYTDHEALKHINSQDSLSARHAAWSAFLQQFTFVVKHQSGITNKVADALSRR--- 2201
                 +YTDH++LK+I +Q  L+ R   W   ++ +   + +  G  N VADALSR+   
Sbjct: 1865 GNRCEIYTDHKSLKYIFTQSDLNLRQRRWLELIKDYDVGIHYHPGKANVVADALSRKSHC 1924

Query: 2202 -------------------------HSLLVDMRIEVPGFDSFRELYATDSFFKIILSSLA 2306
                                        L  +  +    D  RE    D   + +L ++ 
Sbjct: 1925 NTLGVRGIPPELNQQMEALNLSIVSRGFLATLEAKPTLLDQIREAQKNDPDMRGLLKNMK 1984

Query: 2307 RGDASDFILHD-GFLFKGICLCVP-MCSLRLRLVAELHSTG---HVGRDRSIDLVRRQYF 2471
            +G A+ FI  + G L+    +CVP +  L+  ++ E H +    H G  +    ++ +Y+
Sbjct: 1985 QGKAAGFIEDEHGTLWNRNRVCVPDVRELKQLILQEAHESPYSIHPGSTKMYLDLKEKYW 2044

Query: 2472 WPTLRRDVSRFVARCRICQVSKGTSTN-AGLYRPLPIPSQPWGALSMDFVLGLPRTQRGH 2648
            W +++R+++ FVA C +CQ  K      AGL +PL +P   W  + MDF+ GLP+TQ G+
Sbjct: 2045 WVSMKREIAEFVALCDVCQRVKAEHQRPAGLLQPLQVPEWKWDEIGMDFITGLPKTQGGY 2104

Query: 2649 DSIFVVVDRFSKMVHFIPCKRSADAVHVAQLFFREVYRLHGLPVSIVSDRDTRFLSHFWR 2828
            DSI+VVVDR +K+  FIP K +     +A+L+F  +  LHG+P  IVSDR+++F SHFW+
Sbjct: 2105 DSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFARIVSLHGVPKKIVSDRESQFTSHFWK 2164

Query: 2829 SLWSMANTELHFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDTPRAWDIKLSQAEFAHNLA 3008
             L     T L+FS+AYHPQTDGQTE +N+ L ++L   V D  + WD  L  AEF++N +
Sbjct: 2165 KLQEELGTRLNFSTAYHPQTDGQTERLNQILEDMLHACVLDFGKTWDKSLPYAEFSYNNS 2224

Query: 3009 LNRSTGLSPFQVVYGFLPRAPVDLLTLPSRTREDR-RATDFMADLCQVHAATRAKLVDTT 3185
               S  ++P++ +YG   R P+    L  +  E +   TD + +           L    
Sbjct: 2225 YQASIQMAPYEALYGRKCRTPL----LWDQVGESQVFGTDILREAEAKVRTIWDNLKVAQ 2280

Query: 3186 AKYKRAADTHRRQLEFSVGDYVWAVLTKDRYPAHDYH---KLSARKIGPVEILEKINPNA 3356
            ++ K  AD  RR LEF+V D+V+  +T  R   H +    KL+ R +GP  I+ +    A
Sbjct: 2281 SRQKSYADNRRRNLEFAVDDFVYLRVTPLR-GVHRFQTKGKLAPRFVGPFRIIARRGEVA 2339

Query: 3357 YRLRLPNHL-RTSDVFNVCHL 3416
            Y+L LP  L    DVF+V  L
Sbjct: 2340 YQLELPASLGNVHDVFHVSQL 2360


>gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]
          Length = 1518

 Score = 1138 bits (2943), Expect = 0.0
 Identities = 581/1159 (50%), Positives = 764/1159 (65%), Gaps = 26/1159 (2%)
 Frame = +3

Query: 102  CFNCGDPSHLQSACPKRASTRALYVDDVCDADFSSSPVYDDDIS-----------AQPPE 248
            CF C    H +  CP   S R L   +V + +      Y++D +             P +
Sbjct: 311  CFQCQGFGHFRKDCP---SARTLTAIEVAEWEREGLVEYEEDEALVLEEVESEKETSPDQ 367

Query: 249  EFLHGDVGQLLVLQRVCLTPRREDDDSMQRHKLFESTCTVQGKICRFIIDSGSCENVVAA 428
               H D G  L L RV +  ++   ++ QR  +F S CTVQG++C  II+ GSC NV + 
Sbjct: 368  IVAHPDTGHSLFLWRV-MHSQQAPLEADQRSMIFRSRCTVQGRVCNLIINGGSCTNVAST 426

Query: 429  DAIQKLNLSTEPHPTPYSLAWLQRDNEITVTRRVLLTFSIGGKYTDSVWCDVV-PMDACH 605
              + KL L T+ HP PY L WL +D+ + V ++ +++FSIG  Y D V CDVV PMDACH
Sbjct: 427  TMVSKLGLPTQEHPNPYKLRWLSKDSGVRVDKQCIISFSIGKMYKDEVLCDVVVPMDACH 486

Query: 606  LLLGRPWQYDRGVIHDGRQNTYSFLFHGVKVTL--LXXXXXXXXTDAHPR----VLSISY 767
            LLLGRPW+YDR   H G+ N Y F   G KVTL  L        +   P     VL +S 
Sbjct: 487  LLLGRPWEYDRNTTHQGKDNVYIFKHQGKKVTLTPLPPNQRDYGSPNVPEEMSGVLFLSE 546

Query: 768  SAFARAMDASSFVLLLVSRDVSESPN--VPSVVAPLLSEFADIFPDELPPGLPPLRMIQH 941
            +A  + +  +  VL+L+SR+V++  N  VP+ VAPL+  F ++FPDELP GLPPLR I+H
Sbjct: 547  AAMIKEIRQAQPVLMLLSREVNQEENTVVPTAVAPLIQRFQEVFPDELPSGLPPLRGIEH 606

Query: 942  QIDFIPGAKLPNRPHYRMSPSEHEELRRQIEELLHRGHIRESLSPCAVPALLIPKKDGAW 1121
             ID +PG+ LPN+P YR  P+  +EL+ QIEEL+ +G +RESLSPCAVPALL+PKKDG W
Sbjct: 607  HIDLVPGSVLPNKPAYRCDPNATKELQHQIEELMAKGFVRESLSPCAVPALLVPKKDGTW 666

Query: 1122 RMCVDSRALNKITVRYSFPIPRLDDLLDQLGGATVFSKLDLKSGYHQIRIRPGDEWKTAF 1301
            RMC DSRA+N ITV+Y FPIPRLDD+LD+L GA++FSK+DL+ GYHQ+RIR GDEWKTAF
Sbjct: 667  RMCTDSRAINNITVKYRFPIPRLDDMLDELSGASIFSKIDLRQGYHQVRIREGDEWKTAF 726

Query: 1302 KTREGLFEWLVMPFGLSNAPSTFMRIMNQTLRPLIGSCVVVYFDDILVYSKSVHDHLAHL 1481
            KT+ GL+EWLVMPFGLSNAPSTFMR+M + LRP +G   VVYFDDILVYSK+  +HL HL
Sbjct: 727  KTKHGLYEWLVMPFGLSNAPSTFMRLMTEVLRPCLGKFAVVYFDDILVYSKTKGEHLKHL 786

Query: 1482 RAVLSILRTECFYAAPSKCVFLTENVLFLGYRVSATGIGVDDAKIAAIQDWPVPTTLTEV 1661
              V  ILR +  Y    KC F+ E V FLGY +S  GI VD   IAA+Q WP PTT+TEV
Sbjct: 787  EVVFKILREQKLYGKLEKCTFMVEEVAFLGYLISGRGISVDQENIAAMQSWPTPTTVTEV 846

Query: 1662 RSFHGLASFYRRFIPHFSTIMAPITDLMHGKSFSWPTQAATAFTDIKHKLTHAPLLALPD 1841
            RSFHGLASFYRRFI +FST++APIT+ M    F W  QA  +F  IK  + + P+L LPD
Sbjct: 847  RSFHGLASFYRRFIKNFSTVVAPITECMRKGEFQWTEQAQQSFEKIKQLMCNTPILKLPD 906

Query: 1842 FSVPFELHSDASKVGIGAVLSQHGHPIAYFSEKLNATRGRYSTYDIEFYAVVRAIRHWRH 2021
            F   FE+  DAS VGIGAVL Q   P+AYFSEKLN  + +YSTYD EFYA++RA+ HW H
Sbjct: 907  FDQLFEVECDASGVGIGAVLIQSQKPVAYFSEKLNGAKLKYSTYDKEFYAIIRALMHWNH 966

Query: 2022 YLFHREFILYTDHEALKHINSQDSLSARHAAWSAFLQQFTFVVKHQSGITNKVADALSRR 2201
            YL  + F+L++DHEALK+IN Q  L+ RHA W  FLQ FTF  K++ G  N VADALSRR
Sbjct: 967  YLKPKPFVLHSDHEALKYINGQHKLNFRHAKWVEFLQSFTFSSKYKEGKKNVVADALSRR 1026

Query: 2202 HSLLVDMRIEVPGFDSFRELYATDSFFK---IILSSLARGDASDFILHDGFLFKGICLCV 2372
            HSLL  M   V GF+  +ELY  D  F    I  +   +   S ++L +GFLF+G  LCV
Sbjct: 1027 HSLLSVMSNRVLGFEFMKELYKEDPDFSEEWITQTEGHKNQGSKYLLQEGFLFQGNKLCV 1086

Query: 2373 PMCSLRLRLVAELHS---TGHVGRDRSIDLVRRQYFWPTLRRDVSRFVARCRICQVSKGT 2543
            P  S R  L+ E+HS    GH G  +++++++ Q++WP +  DV   + RC  CQ+SK +
Sbjct: 1087 PRGSYRDLLIREVHSGGMGGHFGVQKTLEILQDQFYWPRMMGDVQIILRRCSKCQLSK-S 1145

Query: 2544 STNAGLYRPLPIPSQPWGALSMDFVLGLPRTQRGHDSIFVVVDRFSKMVHFIPCKRSADA 2723
            S   G Y PLP+PS+PW  LSMDF++ LPRTQRG DS+ VVVDRFSKM HF+ CK++ DA
Sbjct: 1146 SFQPGPYTPLPVPSKPWEDLSMDFIVALPRTQRGKDSVMVVVDRFSKMAHFVACKKTEDA 1205

Query: 2724 VHVAQLFFREVYRLHGLPVSIVSDRDTRFLSHFWRSLWSMANTELHFSSAYHPQTDGQTE 2903
            V VA+LF +E+ RLHG+P +IVSDRDT+F+ +FW++LW +  T+L FS+++HPQTDGQTE
Sbjct: 1206 VSVAELFLKEIVRLHGVPKTIVSDRDTKFMGYFWKTLWKLLKTKLLFSTSHHPQTDGQTE 1265

Query: 2904 VVNRSLGNLLRCLVGDTPRAWDIKLSQAEFAHNLALNRSTGLSPFQVVYGFLPRAPVDLL 3083
            V NR+LG +LRCLV  + + WD+KL+ AEFA N A + +TG SPF+VVYG  P  P+DL 
Sbjct: 1266 VTNRTLGRILRCLVSKSLKDWDLKLAAAEFAFNRAPSTATGHSPFEVVYGVNPLMPLDLS 1325

Query: 3084 TLPSRTREDRRATDFMADLCQVHAATRAKLVDTTAKYKRAADTHRRQLEFSVGDYVWAVL 3263
            ++P +   +  A      L ++H   + ++  T  +Y++     + + EF  GD VW  L
Sbjct: 1326 SVP-KENINLDAMKRAEQLLKLHETVKRQIERTNEQYQKHLKVPKGKKEFEPGDLVWIHL 1384

Query: 3264 TKDRYPAHDYHKLSARKIGPVEILEKINPNAYRLRLPNHLRTSDVFNVCHLIPYHGENSF 3443
             K+R+PA   +KL  R  GP E++EKI P+AY++ LP        FNV  L PY+ ++  
Sbjct: 1385 RKERFPAKRKNKLMPRSDGPFEVVEKIGPSAYKIDLPGDYGVHGTFNVGDLSPYYEDS-- 1442

Query: 3444 GDETDFDSRANHLQEGKND 3500
            GDE     R + +Q G  D
Sbjct: 1443 GDEEVTGLRTSPVQPGGVD 1461


>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
          Length = 1618

 Score = 1127 bits (2915), Expect = 0.0
 Identities = 572/1183 (48%), Positives = 765/1183 (64%), Gaps = 50/1183 (4%)
 Frame = +3

Query: 102  CFNCGDPSHLQSACPKRASTRALYVDDVCDADFSSSP----------VYDDDISAQPPEE 251
            C+ C    H+Q  CP +   R L V D  D  +SS+             DD  + +PPEE
Sbjct: 394  CYRCKGYGHVQRDCPNQ---RVLVVKD--DGGYSSASDLDEATLALLAADDAGTKEPPEE 448

Query: 252  FLHGDVGQ---LLVLQRVCLTPRREDDDSMQRHKLFESTCTVQGKICRFIIDSGSCENVV 422
             +  D  +    L++QRV L+ + E  +  QRH LF++ C ++ + CR IID GSC N+ 
Sbjct: 449  QIGADDAEHYESLIVQRV-LSAQMEKAEQNQRHTLFQTKCVIKERSCRLIIDGGSCNNLA 507

Query: 423  AADAIQKLNLSTEPHPTPYSLAWLQRDNEITVTRRVLLTFSIGGKYTDSVWCDVVPMDAC 602
            ++D ++KL L+T+PHP PY + WL    ++ VT+ V + F+IG  Y D V CDVVPMDAC
Sbjct: 508  SSDMVEKLALTTKPHPHPYHIQWLNNSGKVKVTKLVRINFAIGS-YRDVVDCDVVPMDAC 566

Query: 603  HLLLGRPWQYDRGVIHDGRQNTYSFLFHGVKVTLLXXXXXXXXTDAHPRVLSISYSAFAR 782
            ++LLGRPWQ+D   +H GR N YS + H  K+ LL         D   +           
Sbjct: 567  NILLGRPWQFDSDCMHHGRSNQYSLIHHDKKIILLPMSPEAIVRDDVAKATKAKTENNKN 626

Query: 783  ---------AMDASSFVLLLVSRDVSE-----------------------SPNVPSVVAP 866
                      +      LL    DV+E                         ++P V+  
Sbjct: 627  IKVVGNNKDGIKLKGHCLLATKTDVNELFASTTVAYALVCKDALISIQDMQHSLPPVITN 686

Query: 867  LLSEFADIFPDELPPGLPPLRMIQHQIDFIPGAKLPNRPHYRMSPSEHEELRRQIEELLH 1046
            +L E++D+FP E+P GLPP+R I+HQID IPGA LPNR  YR +P E +E++RQ++ELL 
Sbjct: 687  ILQEYSDVFPSEIPEGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLD 746

Query: 1047 RGHIRESLSPCAVPALLIPKKDGAWRMCVDSRALNKITVRYSFPIPRLDDLLDQLGGATV 1226
            +G++RESLSPCAVP +L+PKKDG WRMCVD RA+N IT+RY  PIPRLDD+LD+L GA V
Sbjct: 747  KGYVRESLSPCAVPVILVPKKDGTWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGAIV 806

Query: 1227 FSKLDLKSGYHQIRIRPGDEWKTAFKTREGLFEWLVMPFGLSNAPSTFMRIMNQTLRPLI 1406
            FSK+DL+SGYHQIR++ GDEWKTAFKT+ GL+EWLVMPFGL+NAPSTFMR+MN+ LR  I
Sbjct: 807  FSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFI 866

Query: 1407 GSCVVVYFDDILVYSKSVHDHLAHLRAVLSILRTECFYAAPSKCVFLTENVLFLGYRVSA 1586
            G  VVVYFDDIL+YSKS+ +H+ H+RAV + LR    +    KC F T+ V FLGY V+ 
Sbjct: 867  GKFVVVYFDDILIYSKSMDEHVDHMRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTP 926

Query: 1587 TGIGVDDAKIAAIQDWPVPTTLTEVRSFHGLASFYRRFIPHFSTIMAPITDL-MHGKSFS 1763
             GI VD AK+ AI  WP+P T+T+VRSF GLA FYRRF+  FSTI AP+ +L   G  FS
Sbjct: 927  QGIEVDQAKVEAIHGWPMPKTITQVRSFLGLAGFYRRFVKDFSTIAAPLNELTKKGVHFS 986

Query: 1764 WPTQAATAFTDIKHKLTHAPLLALPDFSVPFELHSDASKVGIGAVLSQHGHPIAYFSEKL 1943
            W      AF  +K KLTHAPLL LPDF+  FEL  DAS +G+G VL Q G P+AYFSEKL
Sbjct: 987  WGKVQEHAFNVLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKL 1046

Query: 1944 NATRGRYSTYDIEFYAVVRAIRHWRHYLFHREFILYTDHEALKHINSQDSLSARHAAWSA 2123
            + +   YSTYD E YA+VR +  W+HYL+ +EF++++DHE+LKHI SQ  L+ RHA W  
Sbjct: 1047 SGSVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQGKLNRRHAKWVE 1106

Query: 2124 FLQQFTFVVKHQSGITNKVADALSRRHSLLVDMRIEVPGFDSFRELYATDSFFKIILSSL 2303
            F++ F +V+KH+ G  N +ADALSRR++LL  +  ++ G ++ ++ Y  D+ FK +L   
Sbjct: 1107 FIESFPYVIKHKKGKENIIADALSRRYTLLNQLDYKIFGLETIKDQYVHDADFKDVLLHC 1166

Query: 2304 ARGDA-SDFILHDGFLFKGICLCVPMCSLRLRLVAELHS---TGHVGRDRSIDLVRRQYF 2471
              G   + +I+ DGF+F+   LC+P  S+RL L+ E H     GH G  ++ D++   +F
Sbjct: 1167 KDGKGWNKYIVSDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHFGAKKTEDILAGHFF 1226

Query: 2472 WPTLRRDVSRFVARCRICQVSKGTSTNAGLYRPLPIPSQPWGALSMDFVLGLPRTQRGHD 2651
            WP +RRDV R VARC  CQ +K      GLY PLP+PS PW  +SMDFVLGLPRT++G D
Sbjct: 1227 WPKMRRDVVRLVARCTTCQKAKSRLNPHGLYLPLPVPSAPWEDISMDFVLGLPRTRKGRD 1286

Query: 2652 SIFVVVDRFSKMVHFIPCKRSADAVHVAQLFFREVYRLHGLPVSIVSDRDTRFLSHFWRS 2831
            S+FVVVDRFSKM HFIPC ++ DA H+A LFFRE+ RLHG+P +IVSDRD +FLSHFWR+
Sbjct: 1287 SVFVVVDRFSKMAHFIPCHKTDDATHIADLFFREIVRLHGVPNTIVSDRDAKFLSHFWRT 1346

Query: 2832 LWSMANTELHFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDTPRAWDIKLSQAEFAHNLAL 3011
            LW+   T+L FS+  HPQTDGQTEVVNR+L  +LR ++    + W+  L   EFA+N +L
Sbjct: 1347 LWAKLGTKLLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEDCLPHIEFAYNRSL 1406

Query: 3012 NRSTGLSPFQVVYGFLPRAPVDLLTLPSRTREDRRATDFMADLCQVHAATRAKLVDTTAK 3191
            + +T + PFQ+VYG LPRAP+DL+ LPS  + +  AT     + ++H  T+  +    A+
Sbjct: 1407 HSTTKMCPFQIVYGLLPRAPIDLMPLPSSEKLNFDATRRAELMLKLHETTKENIERMNAR 1466

Query: 3192 YKRAADTHRRQLEFSVGDYVWAVLTKDRYPAHDYHKLSARKIGPVEILEKINPNAYRLRL 3371
            YK A+D  R+++ F  GD VW  L K+R+P     KL  R  GP ++LEKIN NAYRL L
Sbjct: 1467 YKFASDKGRKEINFEPGDLVWLHLRKERFPELRKSKLLPRADGPFKVLEKINDNAYRLDL 1526

Query: 3372 PNHLRTSDVFNVCHLIPYHGENSFGDETDFDSRANHLQEGKND 3500
            P     S  FN+  L PY      G+E + +SR   +QEG+ND
Sbjct: 1527 PADFGVSPTFNIADLKPY-----LGEEVELESRTTQMQEGEND 1564


>gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score = 1125 bits (2909), Expect = 0.0
 Identities = 578/1182 (48%), Positives = 767/1182 (64%), Gaps = 49/1182 (4%)
 Frame = +3

Query: 102  CFNCGDPSHLQSACPKRASTRALYVDDVCDADFSSSPVYDDDISA---------QPPEEF 254
            C  C    H+Q  CP   S R L V +  D ++SS+  +DDD  A         +PPEE 
Sbjct: 371  CHRCKGFGHVQRDCP---SKRVLVVKN--DGEYSSASDFDDDTLALLAADHADNEPPEEH 425

Query: 255  L---HGDVGQLLVLQRVCLTPRREDDDSMQRHKLFESTCTVQGKICRFIIDSGSCENVVA 425
            +     D  + L++QRV L+ + E  +  QRH LF++ C V+ + CR IID GSC N+ +
Sbjct: 426  IGAAFADHYESLIVQRV-LSAQMEKAEQNQRHTLFQTKCVVKERCCRMIIDGGSCNNLAS 484

Query: 426  ADAIQKLNLSTEPHPTPYSLAWLQRDNEITVTRRVLLTFSIGGKYTDSVWCDVVPMDACH 605
            ++ ++KL LST+PHP  Y + WL    +  VT+ V + F+I G Y D V CDVVPM AC+
Sbjct: 485  SEMVEKLALSTKPHPHSYYIQWLNNSGKAKVTKLVHINFAI-GNYHDVVECDVVPMQACN 543

Query: 606  LLLGRPWQYDRGVIHDGRQNTYSFLFHGVKVTLLXXXXXXXXTD---------------- 737
            +LLGRPWQ+DR  +H GR N YSFL+H  K+ L          D                
Sbjct: 544  ILLGRPWQFDRDSMHHGRSNQYSFLYHDKKIVLHPMSPEDILRDDVAKAAKSKCESDKKA 603

Query: 738  -----------AHPRVLSISYSAFARAMDASSFVLLLVSRDVSES-----PNVPSVVAPL 869
                         P+ L  + S     + + S    LV +D   S      ++P  VA +
Sbjct: 604  QSDGKKPETINLKPKCLLATKSDINELIASPSVAYALVCKDALISLHDMQHSLPPAVANI 663

Query: 870  LSEFADIFPDELPPGLPPLRMIQHQIDFIPGAKLPNRPHYRMSPSEHEELRRQIEELLHR 1049
            L E++D+FP E+PPGLPP+R I+HQID IPGA LPNR  YR +P E +E++RQ+ ELL +
Sbjct: 664  LQEYSDVFPKEVPPGLPPVRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLDK 723

Query: 1050 GHIRESLSPCAVPALLIPKKDGAWRMCVDSRALNKITVRYSFPIPRLDDLLDQLGGATVF 1229
            G++RESLSPCAVP +L+PKKDG+WRMCVD RA+N IT+RY  PIPRLDD+LD+L G+ VF
Sbjct: 724  GYVRESLSPCAVPVILVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSIVF 783

Query: 1230 SKLDLKSGYHQIRIRPGDEWKTAFKTREGLFEWLVMPFGLSNAPSTFMRIMNQTLRPLIG 1409
            SK++L+SGYHQI ++ GDEWKTAFKT+ GL+EWLVMPFGL+NAPSTFMR+MN+ LRP IG
Sbjct: 784  SKVELRSGYHQIHMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFIG 843

Query: 1410 SCVVVYFDDILVYSKSVHDHLAHLRAVLSILRTECFYAAPSKCVFLTENVLFLGYRVSAT 1589
              VVVYFDDIL+YSKS+ +H  HLRAV + LR    +    KC F T+ V FLGY V+  
Sbjct: 844  KFVVVYFDDILIYSKSMGEHFNHLRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQ 903

Query: 1590 GIGVDDAKIAAIQDWPVPTTLTEVRSFHGLASFYRRFIPHFSTIMAPITDL-MHGKSFSW 1766
            GI VD AK+ AIQ WP P T+++VRSF GLA FY RF+  FSTI AP+  L   G  F+W
Sbjct: 904  GIEVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYCRFVQDFSTIAAPLNALTKKGVPFTW 963

Query: 1767 PTQAATAFTDIKHKLTHAPLLALPDFSVPFELHSDASKVGIGAVLSQHGHPIAYFSEKLN 1946
             T    AF  +KHKLTHAPLL LPDF+  FEL  DAS +G+G VL Q G  +AYFSEKL+
Sbjct: 964  GTSQENAFHMLKHKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKLVAYFSEKLS 1023

Query: 1947 ATRGRYSTYDIEFYAVVRAIRHWRHYLFHREFILYTDHEALKHINSQDSLSARHAAWSAF 2126
                 YSTYD E YA+VR +  W+HYL+ +EF++++DHE+LKHI SQ  L+ RHA W  F
Sbjct: 1024 GPVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQGKLNRRHAKWVEF 1083

Query: 2127 LQQFTFVVKHQSGITNKVADALSRRHSLLVDMRIEVPGFDSFRELYATDSFFKIILSSLA 2306
            ++ F +V+KH+ G  N +A+ALSRR++LL  +  ++ G ++ ++ YA D+ F  +L    
Sbjct: 1084 IESFPYVIKHKKGKENIIANALSRRYTLLTQLDYKIFGLETIKDQYAHDADFNDVLLHCK 1143

Query: 2307 RGDA-SDFILHDGFLFKGICLCVPMCSLRLRLVAELHS---TGHVGRDRSIDLVRRQYFW 2474
             G   + F+++DGF+F+   LC+P  S+RL L+ E H     GH G  ++ D++   +FW
Sbjct: 1144 DGRTWNKFVINDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHFGAKKTHDILASHFFW 1203

Query: 2475 PTLRRDVSRFVARCRICQVSKGTSTNAGLYRPLPIPSQPWGALSMDFVLGLPRTQRGHDS 2654
            P +RRDV RFVARC  CQ +K      GLY PLP+P+ PW  +SMDFVLGLPRT+RG DS
Sbjct: 1204 PQMRRDVGRFVARCATCQKAKSRLHPHGLYMPLPVPTVPWEDISMDFVLGLPRTKRGRDS 1263

Query: 2655 IFVVVDRFSKMVHFIPCKRSADAVHVAQLFFREVYRLHGLPVSIVSDRDTRFLSHFWRSL 2834
            IFVVVDRFSKMVHFIPC ++ DA H+A LFFRE+ RLHG+P +IVSDRDT+FLSHFWR+L
Sbjct: 1264 IFVVVDRFSKMVHFIPCHKTDDASHIADLFFREIVRLHGVPNTIVSDRDTKFLSHFWRTL 1323

Query: 2835 WSMANTELHFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDTPRAWDIKLSQAEFAHNLALN 3014
            W+   T+L FS+  HPQTDGQ EVVNR+L  +LR ++    + W+  L   EFA N +L+
Sbjct: 1324 WAKLGTKLLFSTTCHPQTDGQIEVVNRTLSTMLRAVLKKNIKMWEECLPHIEFACNRSLH 1383

Query: 3015 RSTGLSPFQVVYGFLPRAPVDLLTLPSRTREDRRATDFMADLCQVHAATRAKLVDTTAKY 3194
             +T + PFQ+VY  LPRAP+DL+ LPS  + +  A      + ++H  T+  +    AKY
Sbjct: 1384 STTKMCPFQIVYSLLPRAPIDLMPLPSSEKLNFDAKQRAELMLKLHETTKENIERMNAKY 1443

Query: 3195 KRAADTHRRQLEFSVGDYVWAVLTKDRYPAHDYHKLSARKIGPVEILEKINPNAYRLRLP 3374
            K A D  RR+L F  GD VW  L K+R+P     KL  R  GP ++L KIN NAY++ LP
Sbjct: 1444 KFAGDKGRRELNFEPGDLVWLHLRKERFPDLRKSKLMPRADGPFKVLAKINENAYKIDLP 1503

Query: 3375 NHLRTSDVFNVCHLIPYHGENSFGDETDFDSRANHLQEGKND 3500
                 S  FNV  L PY      G+E + +SR   +QEG++D
Sbjct: 1504 ADFGVSPTFNVADLKPY-----LGEEDELESRTTQMQEGEDD 1540


>ref|XP_013746037.1| PREDICTED: uncharacterized protein LOC106448737 [Brassica napus]
            gi|923808461|ref|XP_013690050.1| PREDICTED:
            uncharacterized protein LOC106393961 [Brassica napus]
          Length = 1236

 Score = 1116 bits (2886), Expect = 0.0
 Identities = 540/885 (61%), Positives = 660/885 (74%), Gaps = 11/885 (1%)
 Frame = +3

Query: 102  CFNCGDPSHLQSACPKRASTRALYVDDVCDADFSSSPVYDDDISAQPP--EEFLHGDVGQ 275
            CF CG+  H+Q+ACP       L      D +    P+YDDD   +    E+ + GD G 
Sbjct: 347  CFTCGERGHIQTACPTLGRRGLL----AADKEGMGDPIYDDDEDLEDDIEEDQVAGDTGT 402

Query: 276  LLVLQRVCLTPRREDDDSMQRHKLFESTCTVQGKICRFIIDSGSCENVVAADAIQKLNLS 455
             L+L+R C  P  +  +  QR  LF STCTV+GKICRF+IDSG   NVV+ +A++KLNL 
Sbjct: 403  FLMLRRNCFAP--QTSEPWQRTSLFSSTCTVKGKICRFVIDSGCSANVVSEEAVRKLNLK 460

Query: 456  TEPHPTPYSLAWLQRDNEITVTRRVLLTFSIGGKYTDSVWCDVVPMDACHLLLGRPWQYD 635
            TE HP PY L W+Q   E+ V++R L++ SIG  Y D ++CD+ PMD  H++LGRPWQ+D
Sbjct: 461  TEAHPHPYRLLWMQTGAEVYVSQRTLISLSIGSFYKDELYCDIAPMDVSHIILGRPWQFD 520

Query: 636  RGVIHDGRQNTYSFLFHGVKVTLLXXXXXXXX-------TDAHPRVLSISYSAFARAMDA 794
            R VIH+G+ NT SF+F G K+TLL               + +   ++ IS S F + +  
Sbjct: 521  REVIHNGKTNTNSFMFQGRKITLLPSPDTTSTVATTTTPSTSKQNLMIISRSQFEQELQE 580

Query: 795  SS--FVLLLVSRDVSESPNVPSVVAPLLSEFADIFPDELPPGLPPLRMIQHQIDFIPGAK 968
            +   F L+ V+        +P+   PLL+EF D+FPDELP GLPPLR IQH ID +P A 
Sbjct: 581  TRPLFALVSVTPTPPHPTPLPTAFVPLLTEFEDLFPDELPAGLPPLRDIQHHIDLVPNAV 640

Query: 969  LPNRPHYRMSPSEHEELRRQIEELLHRGHIRESLSPCAVPALLIPKKDGAWRMCVDSRAL 1148
            LPNR HYRMSP EHEELRRQ+E+LL +G++RESLSPCAVPALLIPKKD +WRMCVDSRA+
Sbjct: 641  LPNRAHYRMSPEEHEELRRQVEDLLIKGYVRESLSPCAVPALLIPKKDRSWRMCVDSRAI 700

Query: 1149 NKITVRYSFPIPRLDDLLDQLGGATVFSKLDLKSGYHQIRIRPGDEWKTAFKTREGLFEW 1328
            NKIT RY FPIPRLDDLLDQ+G A++F+KLDLKSGYHQIRIRPGDEWKTAFKTREGLFEW
Sbjct: 701  NKITTRYRFPIPRLDDLLDQIGKASIFTKLDLKSGYHQIRIRPGDEWKTAFKTREGLFEW 760

Query: 1329 LVMPFGLSNAPSTFMRIMNQTLRPLIGSCVVVYFDDILVYSKSVHDHLAHLRAVLSILRT 1508
            LVMPFGLSNAPSTFMR+MNQTLRP IG  VVVYFDDIL++S ++ +HL HLR VL  LR 
Sbjct: 761  LVMPFGLSNAPSTFMRVMNQTLRPFIGRFVVVYFDDILIFSTTMDEHLHHLREVLLALRK 820

Query: 1509 ECFYAAPSKCVFLTENVLFLGYRVSATGIGVDDAKIAAIQDWPVPTTLTEVRSFHGLASF 1688
            +  + A  KC F   +VLFLGY VSA G+ VD  K+ A+  WP PTT++E+RSFHGLASF
Sbjct: 821  DKLFIARQKCEFGRSDVLFLGYVVSAAGLRVDPLKVEAVASWPTPTTISEIRSFHGLASF 880

Query: 1689 YRRFIPHFSTIMAPITDLMHGKSFSWPTQAATAFTDIKHKLTHAPLLALPDFSVPFELHS 1868
            YRRFI +FS+IMAP+TD M G SFSW   A  AF  IK KLT AP+L LPDF  PFELH 
Sbjct: 881  YRRFIHNFSSIMAPVTDCMKGVSFSWTEDATRAFAIIKEKLTTAPILVLPDFDAPFELHC 940

Query: 1869 DASKVGIGAVLSQHGHPIAYFSEKLNATRGRYSTYDIEFYAVVRAIRHWRHYLFHREFIL 2048
            DASK+G+GAVLSQ G P+A++SEKL   R RYSTYDIEFYA+V+AI+HWRHYL H+EFIL
Sbjct: 941  DASKLGVGAVLSQFGRPVAFYSEKLAGARSRYSTYDIEFYAIVQAIKHWRHYLAHKEFIL 1000

Query: 2049 YTDHEALKHINSQDSLSARHAAWSAFLQQFTFVVKHQSGITNKVADALSRRHSLLVDMRI 2228
            +TDH ALK++ +QD +S+RHA+W+A+LQQFTFV+KH+SG  NKVADALSRRH+L+  +R+
Sbjct: 1001 FTDHAALKYLGTQDKISSRHASWTAYLQQFTFVIKHKSGKLNKVADALSRRHALVSTLRV 1060

Query: 2229 EVPGFDSFRELYATDSFFKIILSSLARGDASDFILHDGFLFKGICLCVPMCSLRLRLVAE 2408
             V GF+   +LY TD+FF  I   L +G  SDF L DGF+FK   LCVP CSLRL+++ E
Sbjct: 1061 SVTGFECLSDLYPTDAFFSPIWMDLTQGVRSDFSLVDGFVFKDNRLCVPTCSLRLQIIKE 1120

Query: 2409 LHSTGHVGRDRSIDLVRRQYFWPTLRRDVSRFVARCRICQVSKGTSTNAGLYRPLPIPSQ 2588
            LH  GH+GRDR++ LV   YFWPTLRRDV RFVARC  CQ  KG ++NAGLY PLP+P+Q
Sbjct: 1121 LHGEGHIGRDRTLKLVAESYFWPTLRRDVERFVARCTSCQQGKGQASNAGLYLPLPVPTQ 1180

Query: 2589 PWGALSMDFVLGLPRTQRGHDSIFVVVDRFSKMVHFIPCKRSADA 2723
            PW  +SMDFVLGLPRTQRGHDSIFVVVDRFSKM HFIPCK++ DA
Sbjct: 1181 PWSDISMDFVLGLPRTQRGHDSIFVVVDRFSKMAHFIPCKKTTDA 1225


>emb|CAN79321.1| hypothetical protein VITISV_018984 [Vitis vinifera]
          Length = 1521

 Score = 1112 bits (2877), Expect = 0.0
 Identities = 567/1139 (49%), Positives = 750/1139 (65%), Gaps = 20/1139 (1%)
 Frame = +3

Query: 102  CFNCGDPSHLQSACPKRASTRALYV-----DDVCDADFSSSPVYDDDISAQPPEEFLHGD 266
            CF CG   H    CP    T+ L+      +   ++       Y++D  ++  + +    
Sbjct: 327  CFKCGGHGHYAVVCP----TKGLHFCVEEPESELESYLKKEETYNEDEVSEECDYYDGMT 382

Query: 267  VGQLLVLQRVCLTPRREDDDSMQRHKLFESTCTVQGKICRFIIDSGSCENVVAADAIQKL 446
             G  LV++ +   P+ + ++  +R  +F++  +  G++C  IID GS  N+ + + ++KL
Sbjct: 383  EGHSLVVRPLLTIPKVKGEEDWRRISIFQTRISCHGRLCTMIIDGGSSLNIASQELVEKL 442

Query: 447  NLSTEPHPTPYSLAWLQRDNEITVTRRVLLTFSIGGKYTDSVWCDVVPMDACHLLLGRPW 626
            NL TE HP P+ +AW+  D  I V+ R L+TF  G  + +SVWC+V+P+   H+LLGRPW
Sbjct: 443  NLKTERHPNPFRVAWVN-DTSIPVSFRCLVTFLFGKDFEESVWCEVLPIKVSHILLGRPW 501

Query: 627  QYDRGVIHDGRQNTYSFLFHGVKVTLLXXXXXXXXT----DAHPRVLSISYSAFARAMDA 794
             +DR V HDG +NTY+ + +G K  L              +A P+ + ++   F      
Sbjct: 502  LFDRKVQHDGYENTYALIHNGRKKILRPMKEVPPIKKSNENAQPKKV-LTMCQFENESKE 560

Query: 795  SSFVLLLVSRDVSE----SPNVPSVVAPLLSEFADIFPDELPPGLPPLRMIQHQIDFIPG 962
            +  +  L++R V E        P+    +L +F+D++P ELP  LPP+R IQH ID IPG
Sbjct: 561  TXVIFALMARKVEEFKEQDKEYPANARKILDDFSDLWPVELPNELPPMRDIQHAIDLIPG 620

Query: 963  AKLPNRPHYRMSPSEHEELRRQIEELLHRGHIRESLSPCAVPALLIPKKDGAWRMCVDSR 1142
            A LPN P YRM+P+EH EL+RQ++ELL +G IRESLSPC VPALL PKKDG+WRMCVDSR
Sbjct: 621  ASLPNLPAYRMNPTEHAELKRQVDELLTKGFIRESLSPCGVPALLTPKKDGSWRMCVDSR 680

Query: 1143 ALNKITVRYSFPIPRLDDLLDQLGGATVFSKLDLKSGYHQIRIRPGDEWKTAFKTREGLF 1322
            A+NKIT++Y FPIPRLDD+LD + G+ +FSK+DL+SGYHQIRIRPGDEWKT+FKT++GL+
Sbjct: 681  AINKITIKYRFPIPRLDDMLDMMVGSVIFSKIDLRSGYHQIRIRPGDEWKTSFKTKDGLY 740

Query: 1323 EWLVMPFGLSNAPSTFMRIMNQTLRPLIGSCVVVYFDDILVYSKSVHDHLAHLRAVLSIL 1502
            EWLVMPFGL+NAPSTFMRIM Q L+P IG  VVVYFDDIL+YS+S  DH  HL+ V+  L
Sbjct: 741  EWLVMPFGLTNAPSTFMRIMTQVLKPFIGRFVVVYFDDILIYSRSCEDHEEHLKQVMRTL 800

Query: 1503 RTECFYAAPSKCVFLTENVLFLGYRVSATGIGVDDAKIAAIQDWPVPTTLTEVRSFHGLA 1682
            R E FY    KC F++ +V+FLG+ VS+ G+  D  KI AI DWPVPT + EVRSFHG+A
Sbjct: 801  RAEKFYINLKKCTFMSPSVVFLGFVVSSKGVETDPEKIKAIVDWPVPTNIHEVRSFHGMA 860

Query: 1683 SFYRRFIPHFSTIMAPITDLMHGKSFSWPTQAATAFTDIKHKLTHAPLLALPDFSVPFEL 1862
            +FYRRFI +FS+IMAPIT+ M    F W   A  AF +IK K+ + P+L LPDF   FE+
Sbjct: 861  TFYRRFIRNFSSIMAPITECMKPGLFIWTKAANKAFEEIKSKMVNPPILRLPDFEKVFEV 920

Query: 1863 HSDASKVGIGAVLSQHGHPIAYFSEKLNATRGRYSTYDIEFYAVVRAIRHWRHYLFHREF 2042
              DAS VGIGAVLSQ GHP+A+FSEKLN  + +YSTYD+EFYAVV+AIRHW+HYL ++EF
Sbjct: 921  ACDASHVGIGAVLSQEGHPVAFFSEKLNGAKKKYSTYDLEFYAVVQAIRHWQHYLSYKEF 980

Query: 2043 ILYTDHEALKHINSQDSLSARHAAWSAFLQQFTFVVKHQSGITNKVADALSRRHSLLVDM 2222
            +LY+DHEAL+++NSQ  L++RHA WS+FLQ FTF +KH +GI NKVADALSR+  LLV+M
Sbjct: 981  VLYSDHEALRYLNSQKKLNSRHAKWSSFLQLFTFNLKHCAGIENKVADALSRKALLLVNM 1040

Query: 2223 RIEVPGFDSFRELYATDSFFKIILSSLARGDAS---DFILHDGFLFKGICLCVPMCSLRL 2393
                 GF+  +  Y  D+ F  + SSL  G  +   DF + +G+LF    LC+P  SLR 
Sbjct: 1041 STTTIGFEELKHCYDNDADFGDVYSSLLSGSKATCIDFQILEGYLFYKNRLCLPRTSLRD 1100

Query: 2394 RLVAELHS---TGHVGRDRSIDLVRRQYFWPTLRRDVSRFVARCRICQVSKGTSTNAGLY 2564
             ++ ELH     GH GRD++I LV  ++FWP+L++DV + + +CR CQV KG+  N GLY
Sbjct: 1101 HVIWELHGGGMGGHFGRDKTIALVEDRFFWPSLKKDVWKVIKQCRACQVGKGSKQNTGLY 1160

Query: 2565 RPLPIPSQPWGALSMDFVLGLPRTQRGHDSIFVVVDRFSKMVHFIPCKRSADAVHVAQLF 2744
             PLP+PS+PW  LSMDFVLGLPRTQRG DSIFVVVDRFSKM HFIPCK+++DA +VA LF
Sbjct: 1161 TPLPVPSKPWEDLSMDFVLGLPRTQRGFDSIFVVVDRFSKMAHFIPCKKASDASYVAALF 1220

Query: 2745 FREVYRLHGLPVSIVSDRDTRFLSHFWRSLWSMANTELHFSSAYHPQTDGQTEVVNRSLG 2924
            F+EV RLHGLP SIVSDRD                                 ++ NRSLG
Sbjct: 1221 FKEVVRLHGLPQSIVSDRD---------------------------------KLSNRSLG 1247

Query: 2925 NLLRCLVGDTPRAWDIKLSQAEFAHNLALNRSTGLSPFQVVYGFLPRAPVDLLTLPSRTR 3104
            NLLRC+V D  R WD  L QAEFA N + NR+TG SPF+V YG  P+ PVDL+ LP+  R
Sbjct: 1248 NLLRCIVRDQLRKWDNXLPQAEFAFNSSTNRTTGYSPFEVAYGLKPKQPVDLIPLPTSVR 1307

Query: 3105 EDRRATDFMADLCQVHAATRAKLVDTTAKYKRAADTHRRQLEFSVGDYVWAVLTKDRYPA 3284
              +    F   +  +H   R K+  +   YK AAD HRR ++F  GD V   L  +R+  
Sbjct: 1308 TSQDGDAFARHIRDIHEKVREKIKISNENYKEAADAHRRYIQFQEGDLVMVRLRPERFHP 1367

Query: 3285 HDYHKLSARKIGPVEILEKINPNAYRLRLPNHLRTSDVFNVCHLIPYHG-ENSFGDETD 3458
              Y KL A+K GP  +L+++  NAY L LP++L  S +FNV  L  YHG  N   +E D
Sbjct: 1368 STYQKLQAKKAGPFRVLKRLGENAYLLELPSNLHFSPIFNVEDLHIYHGHHNDVSEELD 1426


>gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]
          Length = 1475

 Score = 1097 bits (2837), Expect = 0.0
 Identities = 568/1159 (49%), Positives = 742/1159 (64%), Gaps = 22/1159 (1%)
 Frame = +3

Query: 102  CFNCGDPSHLQSACPKRASTRALYV----DD---VCDADFSSSPVYDDDISAQPPEEFLH 260
            C+ C    H    CP + +  +  V    DD   VCD +   +   +DD+        + 
Sbjct: 309  CYQCQGYGHFAKECPTKRALSSFEVVHWGDDEILVCDEEVEGTDHEEDDV--------VM 360

Query: 261  GDVGQLLVLQRVCLT-PRREDDDSMQRHKLFESTCTVQGKICRFIIDSGSCENVVAADAI 437
             D G  LV  RV  T P+  + D  QR ++F S CT++G++C  IID GSC NV ++  I
Sbjct: 361  PDAGLSLVTWRVMHTQPQPLEMD--QRQQIFRSRCTIKGRVCNLIIDGGSCTNVASSTLI 418

Query: 438  QKLNLSTEPHPTPYSLAWLQRDNEITVTRRVLLTFSIGGKYTDSVWCDVVPMDACHLLLG 617
            +KL+L T+ HP+PY L WL +  E+ V ++ L+TFSIG  Y+D   CDV+PMDACHLLLG
Sbjct: 419  EKLSLPTQDHPSPYKLRWLNKGAEVRVDKQCLVTFSIGKNYSDEALCDVLPMDACHLLLG 478

Query: 618  RPWQYDRGVIHDGRQNTYSFLFHGVKVTLLXXXXXXXXT------DAHPRVLSISYSAFA 779
            RPW++DR  +H GR NTY+F F   KV L         T      +    VL I+ +   
Sbjct: 479  RPWEFDRDSVHHGRDNTYTFKFRSRKVILTPLPPVLKHTTPPSMLEPSKEVLLINEAEML 538

Query: 780  RAMDASSFVLLLVSRDVSESPNV--PSVVAPLLSEFADIFPDELPPGLPPLRMIQHQIDF 953
            + +     V  L+++DV    NV  P  V  LL  + D+FP+ELP GLPPLR I+HQIDF
Sbjct: 539  QELKGDEDVYALIAKDVVFGQNVSLPKEVQELLQSYEDVFPNELPSGLPPLRGIEHQIDF 598

Query: 954  IPGAKLPNRPHYRMSPSEHEELRRQIEELLHRGHIRESLSPCAVPALLIPKKDGAWRMCV 1133
            IPGA LPN+  YR  P   +EL++QI EL+ +G +RESLSPC+VPALL+PKKDG+WRMC 
Sbjct: 599  IPGATLPNKAAYRSDPKATQELQQQIGELVSKGFVRESLSPCSVPALLVPKKDGSWRMCT 658

Query: 1134 DSRALNKITVRYSFPIPRLDDLLDQLGGATVFSKLDLKSGYHQIRIRPGDEWKTAFKTRE 1313
            DSRA+N IT++Y FPIPRLDD+LD+L GA +FSK+DL+ GYHQ+RI+ GDEWKTAFKT+ 
Sbjct: 659  DSRAINNITIKYRFPIPRLDDILDELSGAQLFSKIDLRQGYHQVRIKEGDEWKTAFKTKH 718

Query: 1314 GLFEWLVMPFGLSNAPSTFMRIMNQTLRPLIGSCVVVYFDDILVYSKSVHDHLAHLRAVL 1493
            GL+EWLVMPFGLSNAPSTFMR+M + LRP +G  VVVYFDDILVYS S  +HL HL+ + 
Sbjct: 719  GLYEWLVMPFGLSNAPSTFMRLMTEVLRPYLGRFVVVYFDDILVYSPSKEEHLKHLQVLF 778

Query: 1494 SILRTECFYAAPSKCVFLTENVLFLGYRVSATGIGVDDAKIAAIQDWPVPTTLTEVRSFH 1673
              LR    Y    KC F+   V FLG+ +S  GI VD  K+ AI+ WP+P  +T+VRSFH
Sbjct: 779  ETLREHKLYGKLEKCSFMQNEVQFLGFIISDRGILVDQEKVKAIKSWPIPKNITDVRSFH 838

Query: 1674 GLASFYRRFIPHFSTIMAPITDLMHGKSFSWPTQAATAFTDIKHKLTHAPLLALPDFSVP 1853
            GLASFYRRFI  FST+MAPIT+ M    F W  +A ++F  IK KL  +P+L LP+F+  
Sbjct: 839  GLASFYRRFIKDFSTLMAPITECMKKGEFKWGDKAESSFNIIKEKLCESPILTLPNFNKL 898

Query: 1854 FELHSDASKVGIGAVLSQHGHPIAYFSEKLNATRGRYSTYDIEFYAVVRAIRHWRHYLFH 2033
            FE+  DAS +GIGAVL Q   PIAYFSEKL+  +  YSTYD EFYA+VRA+ HW HYL  
Sbjct: 899  FEVECDASGIGIGAVLVQEHKPIAYFSEKLSGAKLNYSTYDKEFYAIVRALNHWSHYLKP 958

Query: 2034 REFILYTDHEALKHINSQDSLSARHAAWSAFLQQFTFVVKHQSGITNKVADALSRRHSLL 2213
            R F+L++DHEALK+IN Q  L+ RHA W  FLQ F F  K+  G  N VADALSRR  +L
Sbjct: 959  RPFVLHSDHEALKYINGQHKLNHRHAKWVEFLQSFNFSSKYIEGKDNIVADALSRRFIML 1018

Query: 2214 VDMRIEVPGFDSFRELYATDSFFKIILSSLARGD---ASDFILHDGFLFKGICLCVPMCS 2384
              M   V GF+  +ELY  D  FK     L  G     S +++ +GFLF G  LCVP   
Sbjct: 1019 SFMEQRVLGFEYMKELYVEDPDFKGEWELLQSGQIKLKSKYLVQNGFLFFGNKLCVPRGP 1078

Query: 2385 LRLRLVAELHS---TGHVGRDRSIDLVRRQYFWPTLRRDVSRFVARCRICQVSKGTSTNA 2555
             R  L+ E+HS    GH G  ++ D+++ Q++WP +  DV   + RC  CQ SK +    
Sbjct: 1079 YRNLLIREVHSNGLAGHFGIQKTYDILQEQFYWPKMLGDVQDVIKRCAPCQQSK-SYFQT 1137

Query: 2556 GLYRPLPIPSQPWGALSMDFVLGLPRTQRGHDSIFVVVDRFSKMVHFIPCKRSADAVHVA 2735
            G Y PLP+P+QPW  +SMDF++ LPRTQRG DSI VVVDRFSKM HFI CK++ DA  VA
Sbjct: 1138 GPYTPLPVPNQPWEDISMDFIVALPRTQRGKDSIMVVVDRFSKMAHFIACKKTEDATSVA 1197

Query: 2736 QLFFREVYRLHGLPVSIVSDRDTRFLSHFWRSLWSMANTELHFSSAYHPQTDGQTEVVNR 2915
            +L+F+EV +LHG+P SIVSDRD++F+SHFWR+LW +  T L FS+++HPQTDGQTEV N+
Sbjct: 1198 ELYFKEVVKLHGIPKSIVSDRDSKFMSHFWRTLWKLLKTRLLFSTSHHPQTDGQTEVTNK 1257

Query: 2916 SLGNLLRCLVGDTPRAWDIKLSQAEFAHNLALNRSTGLSPFQVVYGFLPRAPVDLLTLPS 3095
            +LG +LRC V  + + WD+KL+QAEFA N A + +TG SPF+VVYG  P  P DL  +  
Sbjct: 1258 TLGRILRCTVARSLKDWDLKLAQAEFAFNRAPSTTTGKSPFEVVYGVNPMMPTDLAPI-K 1316

Query: 3096 RTREDRRATDFMADLCQVHAATRAKLVDTTAKYKRAADTHRRQLEFSVGDYVWAVLTKDR 3275
            R   D  A   +  +  +H   + ++      +K  +   +    F  GD VW  L K+R
Sbjct: 1317 RNTIDYDAKKRVEQMLHIHEQVKKQIEKANEAHKGKSKGVKGTKSFEPGDLVWIHLRKER 1376

Query: 3276 YPAHDYHKLSARKIGPVEILEKINPNAYRLRLPNHLRTSDVFNVCHLIPYHGENSFGDET 3455
            +P    +KL  R  GP E+LEK   NAY++ LP        FNV  L PY+ E    ++ 
Sbjct: 1377 FPEKRKNKLMPRADGPFEVLEKFGSNAYKINLPGEYGVHGTFNVGDLSPYYEE--IEEDK 1434

Query: 3456 DFDSRANHLQEGKNDGVET 3512
              D RAN  QEG+ +  +T
Sbjct: 1435 LEDLRANPFQEGEIETNQT 1453


>ref|XP_013694892.1| PREDICTED: uncharacterized protein LOC106398939 [Brassica napus]
          Length = 1353

 Score = 1094 bits (2829), Expect = 0.0
 Identities = 540/922 (58%), Positives = 668/922 (72%), Gaps = 19/922 (2%)
 Frame = +3

Query: 102  CFNCGDPSHLQSACPKRASTRALYVDDVCDADFSSSPVYDDDISAQPP---EEFLHGDVG 272
            CFNCG+  H Q+ CPKR     L+ +D          +YDD    Q     EE + GD+G
Sbjct: 299  CFNCGEAGHRQANCPKRV----LFGED--------EVIYDDTEEEQQQTETEEQVAGDIG 346

Query: 273  QLLVLQRVCLTPRREDDDSMQRHKLFESTCTVQGKICRFIIDSGSCENVVAADAIQKLNL 452
             +LV++R CL P+  ++ S  R  LF +TCT++GK+CR I+DSGSC N+V+ +A+ KL L
Sbjct: 347  TILVVRRNCLLPQAMEE-SWLRTNLFRTTCTIRGKVCRLIVDSGSCTNIVSEEAVAKLAL 405

Query: 453  STEPHPTPYSLAWLQRDNEITVTRRVLLTFSIGGKYTDSVWCDVVPMDACHLLLGRPWQY 632
             TEPHP PY LAWL    ++ +T+   +  SIG  Y D V CDV+PMDACH+LLGRPWQY
Sbjct: 406  FTEPHPVPYRLAWLNTKTDLRITKMCRVPLSIGSSYKDLVCCDVIPMDACHILLGRPWQY 465

Query: 633  DRGVIHDGRQNTYSFLFHGVKVTLLXXXXXXXXTDA--------------HPRVLSISYS 770
            DR  IHDG  NTY+F F   ++TLL          A              HP VL ++ +
Sbjct: 466  DRRTIHDGFLNTYAFSFEDKRITLLPSQETSQPAKAETPKASPMEVLKPSHP-VLFVNQT 524

Query: 771  AFARAMDASSFVLLLVSRDVSESP--NVPSVVAPLLSEFADIFPDELPPGLPPLRMIQHQ 944
             F      S+  + L+ + VS     +VPS    L++EF D+FPD+LP GLPPLR IQH 
Sbjct: 525  QFVEECKISNGGMALIIKPVSAQLICDVPSEFKDLVTEFRDVFPDDLPSGLPPLRDIQHC 584

Query: 945  IDFIPGAKLPNRPHYRMSPSEHEELRRQIEELLHRGHIRESLSPCAVPALLIPKKDGAWR 1124
            ID    A LPNRPHYRMSP EH+ELRR +EELL +G++RESLS CAVPALLIPKKDG+WR
Sbjct: 585  IDLTSNAALPNRPHYRMSPQEHDELRRHVEELLAKGYLRESLSLCAVPALLIPKKDGSWR 644

Query: 1125 MCVDSRALNKITVRYSFPIPRLDDLLDQLGGATVFSKLDLKSGYHQIRIRPGDEWKTAFK 1304
            MCVDSRA+NKITVRY FPIP LDDLLDQ+G A +F+KLDLKSGYHQIRIRPGD WKTAFK
Sbjct: 645  MCVDSRAINKITVRYRFPIPCLDDLLDQIGSARIFTKLDLKSGYHQIRIRPGDVWKTAFK 704

Query: 1305 TREGLFEWLVMPFGLSNAPSTFMRIMNQTLRPLIGSCVVVYFDDILVYSKSVHDHLAHLR 1484
            TREGLFEWLVMPFGLSNAPSTFMR+MNQ LRP IG CVVVYFD IL++S S+ DHL HLR
Sbjct: 705  TREGLFEWLVMPFGLSNAPSTFMRVMNQALRPFIGRCVVVYFDYILIFSSSLSDHLEHLR 764

Query: 1485 AVLSILRTECFYAAPSKCVFLTENVLFLGYRVSATGIGVDDAKIAAIQDWPVPTTLTEVR 1664
             VL++LR E  + A  KC F    VLFLGY VS  G+ VD +K+ AI  WP P T+TE+R
Sbjct: 765  DVLTVLRREKLFGAAKKCAFGVSQVLFLGYIVSQQGLSVDPSKVEAIHSWPTPRTVTEIR 824

Query: 1665 SFHGLASFYRRFIPHFSTIMAPITDLMHGKSFSWPTQAATAFTDIKHKLTHAPLLALPDF 1844
            SFHGLASFYRRF+ HFS+IMAPITD +   +F+W  +A  AF  IK KLT AP+L+LP+F
Sbjct: 825  SFHGLASFYRRFVHHFSSIMAPITDCIKSSTFTWTDKAEEAFRVIKTKLTTAPVLSLPNF 884

Query: 1845 SVPFELHSDASKVGIGAVLSQHGHPIAYFSEKLNATRGRYSTYDIEFYAVVRAIRHWRHY 2024
             + FELH DASK GIGAVLSQ   P+A+FSEK++ +R RY TYD+E YAVV+A++HWRHY
Sbjct: 885  DLAFELHCDASKSGIGAVLSQEKKPVAFFSEKISGSRERYRTYDVELYAVVQAVKHWRHY 944

Query: 2025 LFHREFILYTDHEALKHINSQDSLSARHAAWSAFLQQFTFVVKHQSGITNKVADALSRRH 2204
            LFHREF+LYTDH+ALKH++SQD +++RHA+W ++LQQFTFV+KH++G  NKVADALSRRH
Sbjct: 945  LFHREFVLYTDHDALKHMSSQDKVTSRHASWFSYLQQFTFVIKHKAGALNKVADALSRRH 1004

Query: 2205 SLLVDMRIEVPGFDSFRELYATDSFFKIILSSLARGDASDFILHDGFLFKGICLCVPMCS 2384
            +LL  M + V GF++  +LY  D FF  I + L    +S++++ DGFLF+G  LC+P  S
Sbjct: 1005 TLLASMHVSVVGFETLPDLYPLDPFFSKIWNDLQLNRSSEYVIVDGFLFRGNKLCIPESS 1064

Query: 2385 LRLRLVAELHSTGHVGRDRSIDLVRRQYFWPTLRRDVSRFVARCRICQVSKGTSTNAGLY 2564
            LRL+++ E H+ GHVGRDR++ LV   YFWP+LRRDV RF+ RC ICQ SKG ++NAGLY
Sbjct: 1065 LRLQVIREFHNEGHVGRDRTLQLVTSSYFWPSLRRDVERFIVRCGICQASKGHASNAGLY 1124

Query: 2565 RPLPIPSQPWGALSMDFVLGLPRTQRGHDSIFVVVDRFSKMVHFIPCKRSADAVHVAQLF 2744
             PLPIPSQPW  +SMDFVLGLPRTQRG DSIFVVVDRFSKMVHF+PCK++ DAV  + L 
Sbjct: 1125 LPLPIPSQPWTDISMDFVLGLPRTQRGFDSIFVVVDRFSKMVHFVPCKKTTDAVQDSVLC 1184

Query: 2745 FREVYRLHGLPVSIVSDRDTRF 2810
              E    H +      +R TRF
Sbjct: 1185 QAEFAHNHAV------NRSTRF 1200



 Score =  192 bits (487), Expect = 5e-46
 Identities = 95/175 (54%), Positives = 121/175 (69%)
 Frame = +3

Query: 2952 TPRAWDIKLSQAEFAHNLALNRSTGLSPFQVVYGFLPRAPVDLLTLPSRTREDRRATDFM 3131
            T    D  L QAEFAHN A+NRST  SPF V+YG +PR+P+DL   P RTR   RA D +
Sbjct: 1175 TDAVQDSVLCQAEFAHNHAVNRSTRFSPFYVIYGVVPRSPIDLNIAPDRTRSHGRACDMI 1234

Query: 3132 ADLCQVHAATRAKLVDTTAKYKRAADTHRRQLEFSVGDYVWAVLTKDRYPAHDYHKLSAR 3311
             D   +H   +A L   T KYK + D+ RR L+F VGD VWAVLTK+R+P + Y+KL +R
Sbjct: 1235 EDFTSIHQQVKANLEAATLKYKTSVDSRRRDLQFQVGDKVWAVLTKERFPPNSYNKLKSR 1294

Query: 3312 KIGPVEILEKINPNAYRLRLPNHLRTSDVFNVCHLIPYHGENSFGDETDFDSRAN 3476
            K+GP+E+LEKIN NAYRLR P+H+ TSDVFNV HL+ Y  E+   +E + +SRAN
Sbjct: 1295 KVGPLEVLEKINNNAYRLRQPSHMNTSDVFNVKHLVGYLSED---EEDNANSRAN 1346


>ref|XP_013689613.1| PREDICTED: uncharacterized protein LOC106393458 [Brassica napus]
          Length = 2061

 Score = 1093 bits (2828), Expect = 0.0
 Identities = 556/1135 (48%), Positives = 743/1135 (65%), Gaps = 27/1135 (2%)
 Frame = +3

Query: 102  CFNCGDPSHLQSACPKRASTRALYVDDVCDADFSSSPVYDDDISAQPPEEFLHGDVGQLL 281
            CF C    H  + C  +     L   +      S    +  D      E  +    G+LL
Sbjct: 927  CFKCQGRGHYANECTNKNVMILLENGEY----ESEEEKFGSDHEESEEESEVEPVKGRLL 982

Query: 282  VLQRVCLTPRREDDDSMQRHKLFESTCTVQGKICRFIIDSGSCENVVAADAIQKLNLSTE 461
            V +R+ L  + ++ +  QR  LF + C VQGK+C  IID GSC NV +   ++KL L  +
Sbjct: 983  VTRRL-LNLQAKNGELEQRENLFYTRCMVQGKVCSLIIDGGSCVNVASETMVKKLGLKIQ 1041

Query: 462  PHPTPYSLAWLQRDNEITVTRRVLLTFSIGGKYTDSVWCDVVPMDACHLLLGRPWQYDRG 641
             HP  Y L WL  + E+ V+ +VL+  +I G+Y D V CDV+PM+A H+LLGRPWQYDR 
Sbjct: 1042 KHPRSYRLQWLNEEGEMRVSTQVLVPIAI-GRYEDEVLCDVLPMEASHILLGRPWQYDRR 1100

Query: 642  VIHDGRQNTYSFLFHGVKVTLLXXXXXXXXTD------AHPRVLSIS------YSAFARA 785
            V HDG  N +SF F+G K  L+         D         + + +       +S +A+ 
Sbjct: 1101 VSHDGFTNKHSFEFNGKKTVLVPLSPKEVREDQLQLQKKKEKEIDLKPDHNKHHSLYAKP 1160

Query: 786  MD------ASSFVLLLVSRD-----VSESPNVPSVVAPLLSEFADIFPDELPPGLPPLRM 932
             D      + + ++LL+ ++        +P+ PS +  +L E+AD+FPD+ P GLPP+R 
Sbjct: 1161 GDIKRILYSQNSIILLIFKETLLTVTDHTPDHPSELVFILQEYADVFPDDSPIGLPPVRG 1220

Query: 933  IQHQIDFIPGAKLPNRPHYRMSPSEHEELRRQIEELLHRGHIRESLSPCAVPALLIPKKD 1112
            I+HQIDF+PG  LPNRP YR +P E +EL++Q+EEL+ +GHIRESLSPCAVP LL+PKKD
Sbjct: 1221 IEHQIDFVPGCTLPNRPAYRTNPVETKELQKQVEELMEKGHIRESLSPCAVPVLLVPKKD 1280

Query: 1113 GAWRMCVDSRALNKITVRYSFPIPRLDDLLDQLGGATVFSKLDLKSGYHQIRIRPGDEWK 1292
            G+WRMCVD RA+N ITV+Y  PIPRLDD+LD+L G+ +FSK+DLKSGYHQIR++ GDEWK
Sbjct: 1281 GSWRMCVDCRAINNITVKYRHPIPRLDDMLDELHGSCIFSKIDLKSGYHQIRMKEGDEWK 1340

Query: 1293 TAFKTREGLFEWLVMPFGLSNAPSTFMRIMNQTLRPLIGSCVVVYFDDILVYSKSVHDHL 1472
            TAFKT+ GL+EWLVMPFGL+NAPSTFMR+MN  LR  IG  VVVYFDDILVYSK + DH+
Sbjct: 1341 TAFKTKHGLYEWLVMPFGLTNAPSTFMRLMNHILRSFIGIFVVVYFDDILVYSKCLEDHI 1400

Query: 1473 AHLRAVLSILRTECFYAAPSKCVFLTENVLFLGYRVSATGIGVDDAKIAAIQDWPVPTTL 1652
             HLRAVL +LR E  YA   KC F T+N++FLG+ VSA G+ VD  KI AIQ+WP PTT+
Sbjct: 1401 EHLRAVLDVLRKEKLYANLKKCTFCTDNLVFLGFVVSADGVKVDQEKIKAIQEWPSPTTV 1460

Query: 1653 TEVRSFHGLASFYRRFIPHFSTIMAPITDLM-HGKSFSWPTQAATAFTDIKHKLTHAPLL 1829
             EVRSFHGLA FYRRF+  FST+ AP+T+++     F W      AF  +K KLT +PLL
Sbjct: 1461 GEVRSFHGLAGFYRRFVKDFSTLAAPLTEIIKKDVGFKWGEVQEAAFQLLKEKLTQSPLL 1520

Query: 1830 ALPDFSVPFELHSDASKVGIGAVLSQHGHPIAYFSEKLNATRGRYSTYDIEFYAVVRAIR 2009
             LPDFS  FE+  DAS +GIGAVL Q   PIAYFSEKL+     Y+TYD E YA+VRA++
Sbjct: 1521 ILPDFSKTFEIEWDASGIGIGAVLMQDKRPIAYFSEKLSGATLNYATYDKELYALVRALQ 1580

Query: 2010 HWRHYLFHREFILYTDHEALKHINSQDSLSARHAAWSAFLQQFTFVVKHQSGITNKVADA 2189
             W+HYL+ +EF+++TDHE+LK++  Q  LS RHA W  F++ F +V+K++ G  N VADA
Sbjct: 1581 TWQHYLWPKEFVIHTDHESLKYLKGQSKLSKRHARWVEFIETFPYVIKYKQGKENIVADA 1640

Query: 2190 LSRRHSLLVDMRIEVPGFDSFRELYATDSFFKIILSSLARGDASDFILHDGFLFKGICLC 2369
            LSRR+ LL  +  ++ GF+  +E+Y +D  F+    S A+  +  +  HDGFLF    LC
Sbjct: 1641 LSRRYVLLTTLDAKLLGFEQIKEMYESDPDFQEAYKSCAKYASGHYFRHDGFLFYDNRLC 1700

Query: 2370 VPMCSLRLRLVAELHS---TGHVGRDRSIDLVRRQYFWPTLRRDVSRFVARCRICQVSKG 2540
            VP CSLR   V E H     GH G  +++ +++  ++WP ++RDV R   RC  C+++K 
Sbjct: 1701 VPNCSLRDLFVREFHGGSLMGHFGIAKTLKVLQDHFYWPHMKRDVGRICGRCTTCKLAKS 1760

Query: 2541 TSTNAGLYRPLPIPSQPWGALSMDFVLGLPRTQRGHDSIFVVVDRFSKMVHFIPCKRSAD 2720
                 GLY PLPIP+ PW  +SMDFV+GLPRT+ G DSIFVVVDRFSKM HFI C ++ D
Sbjct: 1761 KVQPHGLYTPLPIPTHPWNDISMDFVMGLPRTRTGKDSIFVVVDRFSKMAHFIACNKTDD 1820

Query: 2721 AVHVAQLFFREVYRLHGLPVSIVSDRDTRFLSHFWRSLWSMANTELHFSSAYHPQTDGQT 2900
            A+HVA LFF+EV RLHG+P +IVSDRDT+FLS+FW++LWS   T+L FS+  HPQTDGQT
Sbjct: 1821 ALHVANLFFKEVVRLHGMPRTIVSDRDTKFLSYFWKTLWSKLGTKLLFSTTCHPQTDGQT 1880

Query: 2901 EVVNRSLGNLLRCLVGDTPRAWDIKLSQAEFAHNLALNRSTGLSPFQVVYGFLPRAPVDL 3080
            EVVNR+LG LLR  +    ++W+  L   EFA+N A++ ++  S F++VYGF P +P+DL
Sbjct: 1881 EVVNRTLGTLLRAFIKKNLKSWEDYLPHCEFAYNHAMHSASKFSTFEIVYGFNPISPLDL 1940

Query: 3081 LTLPSRTREDRRATDFMADLCQVHAATRAKLVDTTAKYKRAADTHRRQLEFSVGDYVWAV 3260
            + LP   R           + Q+H   +  L D T +Y + A+  RR++ F VGD VW  
Sbjct: 1941 IPLPECERVSMDGKKKAEMVQQIHEQAKRNLEDKTKQYAKQANKGRREMIFEVGDQVWVH 2000

Query: 3261 LTKDRYPAHDYHKLSARKIGPVEILEKINPNAYRLRLPNHLRTSDVFNVCHLIPY 3425
            L K+R+P     KL  R  GP E+ ++IN NAY+L L      SD FNV  LIP+
Sbjct: 2001 LRKERFPKERKSKLMPRINGPFEVTKRINDNAYKLDLQGKYDISDSFNVTDLIPF 2055


>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1717

 Score = 1085 bits (2805), Expect = 0.0
 Identities = 567/1200 (47%), Positives = 751/1200 (62%), Gaps = 67/1200 (5%)
 Frame = +3

Query: 102  CFNCGDPSHLQSACPKRASTRALYVDDVCDADFSSSPVYDDDISAQPPEEFL-------- 257
            C  C    H    CP   S R + + +  D  + S+  YD++  A    E          
Sbjct: 430  CRRCKGGGHYARECP---SKRVMIITE--DGGYDSASDYDEETLALIASEERGVXDTAQE 484

Query: 258  -------HGDVGQLLVLQRVCLTPRREDDDSMQRHKLFESTCTVQGKICRFIIDSGSCEN 416
                   + D  + LV QRV L+ +    +  QRH LF +   V+ +  R IID GSC N
Sbjct: 485  TQYMAADYADRYESLVAQRV-LSVQVTQVEQNQRHNLFHTKGVVKERSVRVIIDGGSCNN 543

Query: 417  VVAADAIQKLNLSTEPHPTPYSLAWLQRDNEITVTRRVLLTFSIGGKYTDSVWCDVVPMD 596
            + + + ++KL+L+T PHP PY + W     ++ VTR V + FSI   Y+D V CDVVPM 
Sbjct: 544  LASMEMVEKLSLTTRPHPHPYYIQWFNNSGKVKVTRTVRVHFSIA-TYSDFVDCDVVPMQ 602

Query: 597  ACHLLLGRPWQYDRGVIHDGRQNTYSFLFHGVKVTLLXXXXXXXXTDAHPRVLSI----- 761
            AC +LLGRPWQ+D+  +H GR N Y+ +     +TLL         D   R         
Sbjct: 603  ACSVLLGRPWQFDKNSVHHGRTNQYTLVHKDQNITLLPMSPEHIMKDDIARASKAKQDLH 662

Query: 762  -------------------SYSAFARAMDASSFVLLLVSRDVSE---------------- 836
                               S S+ A  +   S  LL    D+++                
Sbjct: 663  KSENQIVAKEFEQHNKPNKSSSSVASEIKLKSGCLLATKSDITDLDITTSVCYAFVCKEV 722

Query: 837  -------SPNVPSVVAPLLSEFADIFPDELPPGLPPLRMIQHQIDFIPGAKLPNRPHYRM 995
                     ++P  V  +L EFAD+FP ++PPGLPP+R I+HQID IPGA LPNR  YR 
Sbjct: 723  LFSFEDMPSSLPPAVINILQEFADVFPQDVPPGLPPIRGIEHQIDLIPGASLPNRAPYRT 782

Query: 996  SPSEHEELRRQIEELLHRGHIRESLSPCAVPALLIPKKDGAWRMCVDSRALNKITVRYSF 1175
            +P E +E+ RQ++ELL +G+IRESLSPCAVP +L+PKKDG  RMCVD R +N IT+RY  
Sbjct: 783  NPEETKEIMRQVQELLDKGYIRESLSPCAVPIILVPKKDGTSRMCVDCRGINNITIRYRH 842

Query: 1176 PIPRLDDLLDQLGGATVFSKLDLKSGYHQIRIRPGDEWKTAFKTREGLFEWLVMPFGLSN 1355
            PIPRLDD+LD+L G+ +FSK+DL+SGYHQIR++ GDEWKTAFKT+ GL+EWLVMPFGL+N
Sbjct: 843  PIPRLDDMLDELSGSIIFSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTN 902

Query: 1356 APSTFMRIMNQTLRPLIGSCVVVYFDDILVYSKSVHDHLAHLRAVLSILRTECFYAAPSK 1535
            APSTFMR+MN+ LR  IG  VVVYFDDIL+YS+S+ DHL HLRAV + LR    +    K
Sbjct: 903  APSTFMRLMNEVLRAFIGRFVVVYFDDILIYSRSLEDHLDHLRAVFTALRDARLFGNLGK 962

Query: 1536 CVFLTENVLFLGYRVSATGIGVDDAKIAAIQDWPVPTTLTEVRSFHGLASFYRRFIPHFS 1715
            C F T+ V FLGY V+  GI VD AKI AI+ WP P T+T+VRSF GLA FYRRF+  FS
Sbjct: 963  CTFCTDRVSFLGYVVTPQGIEVDKAKIEAIESWPQPKTVTQVRSFLGLAGFYRRFVRDFS 1022

Query: 1716 TIMAPITDL-MHGKSFSWPTQAATAFTDIKHKLTHAPLLALPDFSVPFELHSDASKVGIG 1892
            TI AP+ +L      +SW T    AFT +K KLTHAPLL LPDF+  FEL  DAS +G+G
Sbjct: 1023 TIAAPLNELTKKDVPYSWGTAQEEAFTVLKDKLTHAPLLQLPDFNKTFELECDASGIGLG 1082

Query: 1893 AVLSQHGHPIAYFSEKLNATRGRYSTYDIEFYAVVRAIRHWRHYLFHREFILYTDHEALK 2072
             VL Q G P+AYFSEKL+     YSTYD E YA+VR +  W+HYL+ +EF++++DHE+LK
Sbjct: 1083 GVLLQDGKPVAYFSEKLSGPSLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLK 1142

Query: 2073 HINSQDSLSARHAAWSAFLQQFTFVVKHQSGITNKVADALSRRHSLLVDMRIEVPGFDSF 2252
            HI SQ  L+ RHA W  F++ F +V+K + G  N +ADALSRR+++L  +  ++ G ++ 
Sbjct: 1143 HIKSQAKLNRRHAKWVEFIETFPYVIKDKKGKDNVIADALSRRYTMLSQLDFKIFGLETI 1202

Query: 2253 RELYATDSFFKIILSSLARGDA-SDFILHDGFLFKGICLCVPMCSLRLRLVAELHS---T 2420
            ++ Y  D+ FK +L +   G   + FI+++GF+F+   LC+P  S+RL L+ E H     
Sbjct: 1203 KDQYVHDADFKDVLENCREGRTWNKFIINNGFVFRANKLCIPASSIRLLLLQEAHGGGLM 1262

Query: 2421 GHVGRDRSIDLVRRQYFWPTLRRDVSRFVARCRICQVSKGTSTNAGLYRPLPIPSQPWGA 2600
            GH G  +  D++   +FWP +RRDV RFVARC  CQ +K      GLY PLP+PS PW  
Sbjct: 1263 GHFGVKKMEDVLATHFFWPRMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWED 1322

Query: 2601 LSMDFVLGLPRTQRGHDSIFVVVDRFSKMVHFIPCKRSADAVHVAQLFFREVYRLHGLPV 2780
            +SMDFVLGLPRT++G DSIFVVVDRFSKM HFIPC +S DA +VA LFFRE+ RLHG+P 
Sbjct: 1323 ISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDAANVADLFFREIIRLHGVPN 1382

Query: 2781 SIVSDRDTRFLSHFWRSLWSMANTELHFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDTPR 2960
            +IVSDRD +FLSHFWR LW+   T+L FS+  HPQTDGQTEVVNRSL  +LR ++    +
Sbjct: 1383 TIVSDRDAKFLSHFWRCLWAKLGTKLLFSTTCHPQTDGQTEVVNRSLSTMLRAVLKTNLK 1442

Query: 2961 AWDIKLSQAEFAHNLALNRSTGLSPFQVVYGFLPRAPVDLLTLPSRTREDRRATDFMADL 3140
             W+  L   EFA+N +L+ +T + PF++VYGFLPRAP+DLL +PS  + +  A +    +
Sbjct: 1443 LWEECLPHIEFAYNRSLHSTTKMCPFEIVYGFLPRAPIDLLPIPSSEKVNFDAKERAELI 1502

Query: 3141 CQVHAATRAKLVDTTAKYKRAADTHRRQLEFSVGDYVWAVLTKDRYPAHDYHKLSARKIG 3320
             ++H  T+  +    A+YK A D  R+ + F+ GD VW  L KDR+P     KL  R  G
Sbjct: 1503 LKMHELTKENIERMNARYKLAGDKGRKHVVFAPGDLVWLHLRKDRFPDLRKSKLMPRAGG 1562

Query: 3321 PVEILEKINPNAYRLRLPNHLRTSDVFNVCHLIPYHGENSFGDETDFDSRANHLQEGKND 3500
            P ++LEKIN NAYRL LP     S  FN+  L PY      G+E +  SR   +QEG++D
Sbjct: 1563 PFKVLEKINDNAYRLELPXDFGVSPTFNIADLKPY-----LGEEDELPSRTTSVQEGEDD 1617


>gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1720

 Score = 1083 bits (2802), Expect = 0.0
 Identities = 566/1200 (47%), Positives = 751/1200 (62%), Gaps = 67/1200 (5%)
 Frame = +3

Query: 102  CFNCGDPSHLQSACPKRASTRALYVDDVCDADFSSSPVYDDDISAQPPEEFL-------- 257
            C  C    H    CP   S R + + +  D  + S+  YD++  A    E          
Sbjct: 433  CRRCKGGGHYARECP---SKRVMIITE--DGGYDSASDYDEETLALIASEERGVADTAQE 487

Query: 258  -------HGDVGQLLVLQRVCLTPRREDDDSMQRHKLFESTCTVQGKICRFIIDSGSCEN 416
                   + D  + LV QRV L+ +    +  QRH LF +   V+ +  R IID GSC N
Sbjct: 488  TQYMAADYADRYESLVAQRV-LSVQVTQVEQNQRHNLFHTKGVVKERSVRVIIDGGSCNN 546

Query: 417  VVAADAIQKLNLSTEPHPTPYSLAWLQRDNEITVTRRVLLTFSIGGKYTDSVWCDVVPMD 596
            + + + ++KL+L+T PHP PY + W     ++ VTR V + FSI   Y+D V CDVVPM 
Sbjct: 547  LASMEMVEKLSLTTRPHPHPYYIQWFNNSGKVKVTRTVRVHFSIA-TYSDFVDCDVVPMQ 605

Query: 597  ACHLLLGRPWQYDRGVIHDGRQNTYSFLFHGVKVTLLXXXXXXXXTDAHPRVLSI----- 761
            AC +LLGRPWQ+D+  +H GR N Y+ +     +TLL         D   R         
Sbjct: 606  ACSVLLGRPWQFDKNSVHHGRTNQYTLVHKDQNITLLPMSPEHIMKDDIARASKAKQDLH 665

Query: 762  -------------------SYSAFARAMDASSFVLLLVSRDVSE---------------- 836
                               S S+ A  +   S  LL    D+++                
Sbjct: 666  KSENQIVAKEFEQHNKPNKSSSSVASEIKLKSGCLLATKSDITDLDITTSVCYAFVCKEV 725

Query: 837  -------SPNVPSVVAPLLSEFADIFPDELPPGLPPLRMIQHQIDFIPGAKLPNRPHYRM 995
                     ++P  V  +L EFAD+FP ++PPGLPP+R I+HQID IPGA LPNR  YR 
Sbjct: 726  LFSFEDMPSSLPPAVINILQEFADVFPQDVPPGLPPIRGIEHQIDLIPGASLPNRAPYRT 785

Query: 996  SPSEHEELRRQIEELLHRGHIRESLSPCAVPALLIPKKDGAWRMCVDSRALNKITVRYSF 1175
            +P E +E+ RQ++ELL +G+IRESLSPCAVP +L+PKKDG  RMCVD R +N IT+R   
Sbjct: 786  NPEETKEIMRQVQELLDKGYIRESLSPCAVPIILVPKKDGTSRMCVDCRGINNITIRXRH 845

Query: 1176 PIPRLDDLLDQLGGATVFSKLDLKSGYHQIRIRPGDEWKTAFKTREGLFEWLVMPFGLSN 1355
            PIPRLDD+LD+L G+ +FSK+DL+SGYHQIR++ GDEWKTAFKT+ GL+EWLVMPFGL+N
Sbjct: 846  PIPRLDDMLDELSGSIIFSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTN 905

Query: 1356 APSTFMRIMNQTLRPLIGSCVVVYFDDILVYSKSVHDHLAHLRAVLSILRTECFYAAPSK 1535
            APSTFMR+MN+ LR  IG  VVVYFDDIL+YS+S+ DHL HLRAV + LR    +    K
Sbjct: 906  APSTFMRLMNEVLRAFIGRFVVVYFDDILIYSRSLEDHLDHLRAVFTALRDARLFGNLGK 965

Query: 1536 CVFLTENVLFLGYRVSATGIGVDDAKIAAIQDWPVPTTLTEVRSFHGLASFYRRFIPHFS 1715
            C F T+ V FLGY V+  GI VD AKI AI+ WP P T+T+VRSF G A FYRRF+  FS
Sbjct: 966  CTFCTDRVSFLGYVVTPQGIEVDKAKIEAIESWPQPKTVTQVRSFLGXAGFYRRFVRDFS 1025

Query: 1716 TIMAPITDL-MHGKSFSWPTQAATAFTDIKHKLTHAPLLALPDFSVPFELHSDASKVGIG 1892
            TI AP+ +L      +SW T    AFT +K KLTHAPLL LPDF+  FEL  DAS +G+G
Sbjct: 1026 TIAAPLNELTKKDVPYSWGTAQEEAFTVLKDKLTHAPLLQLPDFNKTFELECDASGIGLG 1085

Query: 1893 AVLSQHGHPIAYFSEKLNATRGRYSTYDIEFYAVVRAIRHWRHYLFHREFILYTDHEALK 2072
             VL Q G P+AYFSEKL+     YSTYD E YA+VR +  W+HYL+ +EF++++DHE+LK
Sbjct: 1086 GVLLQDGKPVAYFSEKLSGPSLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLK 1145

Query: 2073 HINSQDSLSARHAAWSAFLQQFTFVVKHQSGITNKVADALSRRHSLLVDMRIEVPGFDSF 2252
            HI SQ  L+ RHA W  F++ F +V+KH+ G  N +ADALSRR+++L  +  ++ G ++ 
Sbjct: 1146 HIKSQAKLNRRHAKWVEFIETFPYVIKHKKGKDNVIADALSRRYTMLSQLDFKIFGLETI 1205

Query: 2253 RELYATDSFFKIILSSLARGDA-SDFILHDGFLFKGICLCVPMCSLRLRLVAELHS---T 2420
            ++ Y  D+ FK +L +   G   + FI+++GF+F+   LC+P  S+RL L+ E H     
Sbjct: 1206 KDQYVHDADFKDVLENCREGRTWNKFIINNGFVFRANKLCIPASSIRLLLLQEAHGGGLM 1265

Query: 2421 GHVGRDRSIDLVRRQYFWPTLRRDVSRFVARCRICQVSKGTSTNAGLYRPLPIPSQPWGA 2600
            GH G  +  D++   +FWP +RRDV RFVARC  CQ +K      GLY PLP+PS PW  
Sbjct: 1266 GHFGVKKMEDVLATHFFWPRMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWED 1325

Query: 2601 LSMDFVLGLPRTQRGHDSIFVVVDRFSKMVHFIPCKRSADAVHVAQLFFREVYRLHGLPV 2780
            +SMDFVLGLPRT++G DSIFVVVDRFSKM HFIPC +S DA +VA LFFRE+ RLHG+P 
Sbjct: 1326 ISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDAANVADLFFREIIRLHGVPN 1385

Query: 2781 SIVSDRDTRFLSHFWRSLWSMANTELHFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDTPR 2960
            +IVSDRD +FLSHFWR LW+   T+L FS+  HPQTDGQTEVVNRSL  +LR ++ +  +
Sbjct: 1386 TIVSDRDAKFLSHFWRCLWAKLGTKLLFSTTCHPQTDGQTEVVNRSLSTMLRAVLKNNIK 1445

Query: 2961 AWDIKLSQAEFAHNLALNRSTGLSPFQVVYGFLPRAPVDLLTLPSRTREDRRATDFMADL 3140
             W+  L   EFA+N +L+ +T + PF++VYGFLPRAP+DLL +PS  + +  A +    +
Sbjct: 1446 LWEECLPHIEFAYNRSLHSTTKMCPFEIVYGFLPRAPIDLLPIPSSEKVNFDAKERAELI 1505

Query: 3141 CQVHAATRAKLVDTTAKYKRAADTHRRQLEFSVGDYVWAVLTKDRYPAHDYHKLSARKIG 3320
             ++H  T+  +    A+YK A D  R+ + F+ GD VW  L KDR+P     KL  R  G
Sbjct: 1506 LKMHELTKENIERMNARYKLAGDKGRKHVVFAPGDLVWLHLRKDRFPDLRKSKLMPRAGG 1565

Query: 3321 PVEILEKINPNAYRLRLPNHLRTSDVFNVCHLIPYHGENSFGDETDFDSRANHLQEGKND 3500
            P ++LEKIN NAYRL LP     S  FN+  L PY      G+E +  SR   +QEG++D
Sbjct: 1566 PFKVLEKINDNAYRLELPADFGVSPTFNIADLKPY-----LGEEDELPSRTTSVQEGEDD 1620


>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|15217296|gb|AAK92640.1|AC079634_1 Putative
            retroelement [Oryza sativa Japonica Group]
            gi|31431373|gb|AAP53161.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 1708

 Score = 1082 bits (2797), Expect = 0.0
 Identities = 561/1203 (46%), Positives = 751/1203 (62%), Gaps = 70/1203 (5%)
 Frame = +3

Query: 102  CFNCGDPSHLQSACPKRASTRALYVDDVCDADFSSSPVYDDDISA-------------QP 242
            C  C    H++  CP   STR + V    D  +SS+   D++  A               
Sbjct: 399  CLRCKGYGHVRKDCP---STRVMIVR--ADGGYSSASDLDEETYALLATNNAGKGDAPHQ 453

Query: 243  PEEFLHGDVGQ---LLVLQRVCLTPRREDDDSMQRHKLFESTCTVQGKICRFIIDSGSCE 413
             EE +  +  +    LV+QRV L+ + E  +  QRH LF++ C ++ + CR IID GSC 
Sbjct: 454  DEEHIGAEAAEHYESLVVQRV-LSAQMERAEQNQRHTLFQTKCVIKERSCRVIIDRGSCN 512

Query: 414  NVVAADAIQKLNLSTEPHPTPYSLAWLQRDNEITVTRRVLLTFSIGGKYTDSVWCDVVPM 593
            N+ +A+ ++KL LST+PHP PY + WL    ++ VTR V + F+I G Y DS+ CDVVPM
Sbjct: 513  NLASAEMVEKLALSTQPHPQPYYIQWLNSSGKVKVTRLVRVHFAI-GSYHDSINCDVVPM 571

Query: 594  DACHLLLGRPWQYDRGVIHDGRQNTYSFLFHGVKVTLLXXXXXXXXTDAHPRVLSISYSA 773
             AC + LGRPWQ+D+  +H G+ N YSF+ +G K+ L          D   R        
Sbjct: 572  QACSIFLGRPWQFDKDSLHFGKSNQYSFVHNGKKLVLHPMSPEVILKDELARASKQKNQE 631

Query: 774  FARA----------------------------MDASSFVLLLVSRDVSESPNV------- 848
              R+                            +  S F+      D  ++  V       
Sbjct: 632  HTRSEHLIAANELEKHKKKPTNSVQNNKNEIKLKGSCFIATKSDLDEVDTDTVVCYALVC 691

Query: 849  ----------PSVVAPLLSEFADIFPDELP----PGLPPLRMIQHQIDFIPGAKLPNRPH 986
                      P  + P ++     + D  P    PGLPP+R I+HQID IPGA LPNR  
Sbjct: 692  KETLFPIEDTPISLPPPVTNLLQEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAP 751

Query: 987  YRMSPSEHEELRRQIEELLHRGHIRESLSPCAVPALLIPKKDGAWRMCVDSRALNKITVR 1166
            YR +P E +E++RQ++ELL +G++RESLSPC++P LL+PKKDG+WRMCVD RA+N IT+R
Sbjct: 752  YRTNPEETKEIQRQVQELLDKGYVRESLSPCSIPVLLVPKKDGSWRMCVDCRAINNITIR 811

Query: 1167 YSFPIPRLDDLLDQLGGATVFSKLDLKSGYHQIRIRPGDEWKTAFKTREGLFEWLVMPFG 1346
            Y  PIPRLDD+LD+L G+ VFSK+DL+SGYHQIR++ GDEWKTAFKT+ GL+EWLVMPFG
Sbjct: 812  YRHPIPRLDDMLDELSGSLVFSKIDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFG 871

Query: 1347 LSNAPSTFMRIMNQTLRPLIGSCVVVYFDDILVYSKSVHDHLAHLRAVLSILRTECFYAA 1526
            L+NAPSTF+R+MN+ LR  IG  VVVYFDDIL+YS+S+ DH  HLRAV   LR E  +  
Sbjct: 872  LTNAPSTFIRLMNEVLRAFIGRFVVVYFDDILIYSRSIEDHHGHLRAVFDALRDERLFGN 931

Query: 1527 PSKCVFLTENVLFLGYRVSATGIGVDDAKIAAIQDWPVPTTLTEVRSFHGLASFYRRFIP 1706
              KC F T+ V FLGY V+  GI VD AK+ AI  WPVPTT+T+VRSF GLA FYRRF+ 
Sbjct: 932  LEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRRFVK 991

Query: 1707 HFSTIMAPITDL-MHGKSFSWPTQAATAFTDIKHKLTHAPLLALPDFSVPFELHSDASKV 1883
             FSTI AP+ +L     +F+W      AF  +K KLTHAPLL LPDF+  FEL  DAS +
Sbjct: 992  DFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFNKTFELECDASGI 1051

Query: 1884 GIGAVLSQHGHPIAYFSEKLNATRGRYSTYDIEFYAVVRAIRHWRHYLFHREFILYTDHE 2063
            G+G VL Q G PI YFSEKL+     YSTYD E +A+VR +  W+HYL+ +EF++++DHE
Sbjct: 1052 GLGGVLLQEGKPIEYFSEKLSGPSLNYSTYDKELFALVRTLETWQHYLWPKEFVIHSDHE 1111

Query: 2064 ALKHINSQDSLSARHAAWSAFLQQFTFVVKHQSGITNKVADALSRRHSLLVDMRIEVPGF 2243
            +LKHI SQ  L+ RHA W  F++ F +V+KH+ G  N +ADALSRR+++L  +  ++ G 
Sbjct: 1112 SLKHIRSQAKLNRRHAKWVEFIESFPYVIKHKKGKENVIADALSRRYAMLSQLDFKIFGL 1171

Query: 2244 DSFRELYATDSFFKIILSSLARGDA-SDFILHDGFLFKGICLCVPMCSLRLRLVAELHS- 2417
            ++ +E YA D  FK +L +   G   + F+L +GF+F+   LC+P  S+R+ L+ E H  
Sbjct: 1172 ETIKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVRMLLLQEAHGG 1231

Query: 2418 --TGHVGRDRSIDLVRRQYFWPTLRRDVSRFVARCRICQVSKGTSTNAGLYRPLPIPSQP 2591
               GH G  ++ D++   +FWP +RRDV RFVARC  CQ +K      GLY PLP+PS P
Sbjct: 1232 GLMGHFGVKKTEDILADHFFWPKMRRDVERFVARCTTCQKAKLRLNPHGLYMPLPVPSVP 1291

Query: 2592 WGALSMDFVLGLPRTQRGHDSIFVVVDRFSKMVHFIPCKRSADAVHVAQLFFREVYRLHG 2771
            W  +SMDFVLGLPRT++G DSIFVVVDRFSKM HFIPC +S DA HVA LFFRE+ RLHG
Sbjct: 1292 WEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFREIVRLHG 1351

Query: 2772 LPVSIVSDRDTRFLSHFWRSLWSMANTELHFSSAYHPQTDGQTEVVNRSLGNLLRCLVGD 2951
            +P +IVSDRDT+FLSHFWR+LW+   T+L FS+  HPQTDGQTEVVNR+L  +LR ++  
Sbjct: 1352 VPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKK 1411

Query: 2952 TPRAWDIKLSQAEFAHNLALNRSTGLSPFQVVYGFLPRAPVDLLTLPSRTREDRRATDFM 3131
              + W+  L   EFA+N + + +T   PF++VYG LPRAP+DLL LP+  R +  A    
Sbjct: 1412 NIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLPTSERVNFDAKYHA 1471

Query: 3132 ADLCQVHAATRAKLVDTTAKYKRAADTHRRQLEFSVGDYVWAVLTKDRYPAHDYHKLSAR 3311
              + ++H  T+  +     KYK A    ++ + F  GD VW  L KDR+P     KL  R
Sbjct: 1472 ELMLKLHETTKENIERMNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRFPNLRKSKLLPR 1531

Query: 3312 KIGPVEILEKINPNAYRLRLPNHLRTSDVFNVCHLIPYHGENSFGDETDFDSRANHLQEG 3491
              GP ++L+KIN N Y+L LP     S  FN+  L PY      G+E + +SR   +QEG
Sbjct: 1532 ADGPFKVLQKINDNTYKLELPADFGVSPTFNIADLKPY-----LGEEDELESRTTQMQEG 1586

Query: 3492 KND 3500
            ++D
Sbjct: 1587 EDD 1589


>gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum subsp.
            aegilopoides]
          Length = 1704

 Score = 1080 bits (2794), Expect = 0.0
 Identities = 564/1201 (46%), Positives = 751/1201 (62%), Gaps = 68/1201 (5%)
 Frame = +3

Query: 102  CFNCGDPSHLQSACPKRASTRALYVDDVCDADFSSSPVYDDDISAQPPEEFLHGDVG--- 272
            C  C    H    CP   S R + V +  D  + S+  YD++  A    +   GD     
Sbjct: 417  CRRCKGGGHYARECP---SKRVMIVSE--DGGYESASDYDEETLALITRDKHGGDDSDHE 471

Query: 273  ------------QLLVLQRVCLTPRREDDDSMQRHKLFESTCTVQGKICRFIIDSGSCEN 416
                        + LV QRV L+ +    +  QRH LF +   V+ +  R IID GSC N
Sbjct: 472  TQYMAPEDADRYECLVAQRV-LSVQVTQAEQNQRHNLFHTKGVVKERSVRVIIDGGSCNN 530

Query: 417  VVAADAIQKLNLSTEPHPTPYSLAWLQRDNEITVTRRVLLTFSIGGKYTDSVWCDVVPMD 596
            + + + ++KL+L T PHP PY + W     ++ VTR V + FSI   Y D V CDVVPM 
Sbjct: 531  LASMEMVEKLSLITRPHPHPYYIQWFNNSGKVKVTRTVRVHFSIS-TYADYVDCDVVPMQ 589

Query: 597  ACHLLLGRPWQYDRGVIHDGRQNTYSFLFHGVKVTLLXXXXXXXXTD------------- 737
            AC LLLGRPWQ+D+  +H  R+N Y+ +     +TLL         D             
Sbjct: 590  ACSLLLGRPWQFDKNSVHHDRKNLYTLVHKDKNITLLPMTPESILKDDINRANKAKQEKN 649

Query: 738  -AHPRVLSISY-----------SAFARAMDASSFVLLLVSRDVSE--------------- 836
             +  ++++  +           S+ A  +   S  LL    D+ +               
Sbjct: 650  KSENQIVAKEFEQQMQSNNNKQSSVACEIKLKSACLLATKSDIDDLDFSKSVCYAFVCKE 709

Query: 837  --------SPNVPSVVAPLLSEFADIFPDELPPGLPPLRMIQHQIDFIPGAKLPNRPHYR 992
                      ++P  V  +L EF D+FP ++PPGLPP+R I+HQID IPGA LPNR  YR
Sbjct: 710  ALFSFEDVPSSLPPAVTNILQEFTDVFPQDVPPGLPPIRGIEHQIDLIPGASLPNRAPYR 769

Query: 993  MSPSEHEELRRQIEELLHRGHIRESLSPCAVPALLIPKKDGAWRMCVDSRALNKITVRYS 1172
             +P E +E+ RQ++ELL +G+IRESLSPCAVP +L+PKKDG  RMCVD R +N IT+RY 
Sbjct: 770  TNPEETKEIMRQVQELLDKGYIRESLSPCAVPIILVPKKDGTSRMCVDCRGINNITIRYR 829

Query: 1173 FPIPRLDDLLDQLGGATVFSKLDLKSGYHQIRIRPGDEWKTAFKTREGLFEWLVMPFGLS 1352
             PIPRLDD+LD+L G+T+FSK+DL+SGYHQIR++ GDEWKT FKT+ GL+EWLVMPFGL+
Sbjct: 830  HPIPRLDDMLDELSGSTIFSKVDLRSGYHQIRMKLGDEWKTTFKTKFGLYEWLVMPFGLT 889

Query: 1353 NAPSTFMRIMNQTLRPLIGSCVVVYFDDILVYSKSVHDHLAHLRAVLSILRTECFYAAPS 1532
            NAPSTFMR+MN+ LR  IG  VVVYFDDIL+YSKS+ +HL HLRAV   LR    +    
Sbjct: 890  NAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYSKSLEEHLEHLRAVFIALRDARLFGNLG 949

Query: 1533 KCVFLTENVLFLGYRVSATGIGVDDAKIAAIQDWPVPTTLTEVRSFHGLASFYRRFIPHF 1712
            KC F T+ V FLGY V+  GI VD AKI AI+ WP P T+T+VRSF GLA FYRRF+  F
Sbjct: 950  KCTFCTDRVSFLGYVVTPQGIEVDKAKIEAIESWPHPKTVTQVRSFLGLAGFYRRFVRDF 1009

Query: 1713 STIMAPITDL-MHGKSFSWPTQAATAFTDIKHKLTHAPLLALPDFSVPFELHSDASKVGI 1889
            STI AP+ ++      F W T    AFT +K KLT+APLL LP+F+  FEL  DAS +G+
Sbjct: 1010 STIAAPLNEVTKKDVPFVWGTAQEEAFTVLKDKLTYAPLLQLPNFNKTFELECDASGIGL 1069

Query: 1890 GAVLSQHGHPIAYFSEKLNATRGRYSTYDIEFYAVVRAIRHWRHYLFHREFILYTDHEAL 2069
            G VL Q G P+AYFSEK +     YSTYD E YA+VR +  W+HYL+ +EF++++DHE+L
Sbjct: 1070 GGVLLQDGKPVAYFSEKFSGPSLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESL 1129

Query: 2070 KHINSQDSLSARHAAWSAFLQQFTFVVKHQSGITNKVADALSRRHSLLVDMRIEVPGFDS 2249
            KHI SQ  L+ RHA W  F++ F +V+KH+ G  N +ADALSRR+++L  +  ++ G ++
Sbjct: 1130 KHIKSQAKLNRRHAKWVEFIETFPYVIKHKKGKENVIADALSRRYTMLSQLDFKIFGLET 1189

Query: 2250 FRELYATDSFFKIILSSLARGDA-SDFILHDGFLFKGICLCVPMCSLRLRLVAELHS--- 2417
             ++ Y  D+ FK +L +   G   + F+L+DGF+F+   LC+P  S+RL L+ E H    
Sbjct: 1190 IKDQYVHDAEFKDVLQNCKEGRTWNKFVLNDGFVFRANKLCIPASSVRLLLLQEAHGGGL 1249

Query: 2418 TGHVGRDRSIDLVRRQYFWPTLRRDVSRFVARCRICQVSKGTSTNAGLYRPLPIPSQPWG 2597
             GH G  ++ D++   +FWP +RRDV RFVARC  CQ +K      GLY PLP+PS PW 
Sbjct: 1250 MGHFGVKKTEDILATHFFWPKMRRDVERFVARCTTCQRAKSRLNPHGLYMPLPVPSVPWE 1309

Query: 2598 ALSMDFVLGLPRTQRGHDSIFVVVDRFSKMVHFIPCKRSADAVHVAQLFFREVYRLHGLP 2777
             +SMDFVLGLPRT++G DSIFVVVDRFSKM HFIPC +S DAV+VA LFFRE+ RLHG+P
Sbjct: 1310 DISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDAVNVADLFFREIIRLHGVP 1369

Query: 2778 VSIVSDRDTRFLSHFWRSLWSMANTELHFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDTP 2957
             +IVSDRDT+FLSHFWR LW+    +L FS+  HPQTDGQTEVVNR+L  +LR ++ +  
Sbjct: 1370 NTIVSDRDTKFLSHFWRCLWAKLGNKLLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKNNK 1429

Query: 2958 RAWDIKLSQAEFAHNLALNRSTGLSPFQVVYGFLPRAPVDLLTLPSRTREDRRATDFMAD 3137
            + W+  L   EFA+N +L+ +T + PF++VYGFLPRAP+DLL LPS  + +  A +    
Sbjct: 1430 KMWEECLPHIEFAYNRSLHSTTKMCPFEIVYGFLPRAPIDLLPLPSSEKVNFDAKERSEL 1489

Query: 3138 LCQVHAATRAKLVDTTAKYKRAADTHRRQLEFSVGDYVWAVLTKDRYPAHDYHKLSARKI 3317
            + ++H  T+  +    AKYK A D  R+ + F+ GD VW  L KDR+P     KL  R  
Sbjct: 1490 ILKIHELTKENIERMNAKYKLARDKGRKHVVFAPGDLVWLHLRKDRFPNLRKSKLMPRAD 1549

Query: 3318 GPVEILEKINPNAYRLRLPNHLRTSDVFNVCHLIPYHGENSFGDETDFDSRANHLQEGKN 3497
            GP ++LEKIN NAY+L LP     S  FN+  L PY      G+E +  SR    QEG++
Sbjct: 1550 GPFKVLEKINDNAYKLELPADFGVSPTFNIADLKPY-----LGEEDELPSRTTSFQEGED 1604

Query: 3498 D 3500
            D
Sbjct: 1605 D 1605


>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1616

 Score = 1077 bits (2785), Expect = 0.0
 Identities = 560/1203 (46%), Positives = 749/1203 (62%), Gaps = 70/1203 (5%)
 Frame = +3

Query: 102  CFNCGDPSHLQSACPKRASTRALYVDDVCDADFSSSPVYDDDISA-------------QP 242
            C  C    H++  CP   STR + V    D  +SS+   D +  A               
Sbjct: 399  CLRCKGYGHVRKDCP---STRVMIVR--ADGGYSSASDLDGETYALLATNNAREGDAPHQ 453

Query: 243  PEEFLHGDVGQ---LLVLQRVCLTPRREDDDSMQRHKLFESTCTVQGKICRFIIDSGSCE 413
             EE +  +  +    LV+QRV L+ + E  +  QRH LF++ C ++ + CR IID GSC 
Sbjct: 454  DEEHIGAEAAEHYESLVVQRV-LSAQMERAEQNQRHTLFQTKCVIKERSCRVIIDGGSCN 512

Query: 414  NVVAADAIQKLNLSTEPHPTPYSLAWLQRDNEITVTRRVLLTFSIGGKYTDSVWCDVVPM 593
            N+ +A+ ++KL LST+PHP PY + WL    ++ VTR V + F+I G Y DS+ CDVVPM
Sbjct: 513  NLASAEMVEKLALSTQPHPQPYYIQWLNSSGKVKVTRLVRVHFAI-GSYHDSINCDVVPM 571

Query: 594  DACHLLLGRPWQYDRGVIHDGRQNTYSFLFHGVKVTLLXXXXXXXXTDAHPRVLSISYSA 773
             AC +LLGRPWQ+D+  +H G+ N YSF+ +G K+ L          D   R        
Sbjct: 572  QACSMLLGRPWQFDKDSLHFGKSNQYSFVHNGKKLVLHPMSPEVILKDELARASKQKNQE 631

Query: 774  FARA----------------------------MDASSFVLLLVSRDVSESPNV------- 848
              R+                            +  S F+      D  ++  V       
Sbjct: 632  HTRSEHLIAANELEKHKKKPTNSVQNNKNEIKLKGSCFIATKSDLDEVDTDTVVCYALVC 691

Query: 849  ----------PSVVAPLLSEFADIFPDELP----PGLPPLRMIQHQIDFIPGAKLPNRPH 986
                      P  + P ++     + D  P    PGLPP+R I+HQID IPGA LPNR  
Sbjct: 692  KETLFPIEDTPISLPPPVTNLLQEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAP 751

Query: 987  YRMSPSEHEELRRQIEELLHRGHIRESLSPCAVPALLIPKKDGAWRMCVDSRALNKITVR 1166
            YR +P E +E++RQ++ELL +G++RESLSPC+VP LL+PKKDG+WRMCVD RA+N IT+R
Sbjct: 752  YRTNPEETKEIQRQVQELLDKGYVRESLSPCSVPVLLVPKKDGSWRMCVDCRAINNITIR 811

Query: 1167 YSFPIPRLDDLLDQLGGATVFSKLDLKSGYHQIRIRPGDEWKTAFKTREGLFEWLVMPFG 1346
            Y  PIPRLDD+LD+L G+ VFSK+DL+SGYHQIR++ GDEWKTAFKT+ GL+EWLVMPFG
Sbjct: 812  YRHPIPRLDDMLDELSGSLVFSKIDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFG 871

Query: 1347 LSNAPSTFMRIMNQTLRPLIGSCVVVYFDDILVYSKSVHDHLAHLRAVLSILRTECFYAA 1526
            L+NAPSTFMR+MN+ LR  IG  VVVYFDDIL+YS+S+ DH  HLRAV   LR    +  
Sbjct: 872  LTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYSRSIEDHHGHLRAVFDALRDARLFGN 931

Query: 1527 PSKCVFLTENVLFLGYRVSATGIGVDDAKIAAIQDWPVPTTLTEVRSFHGLASFYRRFIP 1706
              KC F T+ V FL Y V+  GI VD AK+ AI +WPVPTT+T+VRSF GLA FYRRF+ 
Sbjct: 932  LEKCTFCTDRVSFLSYVVTPQGIEVDQAKVEAIHNWPVPTTITQVRSFLGLAGFYRRFVK 991

Query: 1707 HFSTIMAPITDL-MHGKSFSWPTQAATAFTDIKHKLTHAPLLALPDFSVPFELHSDASKV 1883
             FSTI AP+ +L     +F+W      AF  +K KLTHAPLL LPDF+  FE   DAS +
Sbjct: 992  DFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFNKTFEHECDASGI 1051

Query: 1884 GIGAVLSQHGHPIAYFSEKLNATRGRYSTYDIEFYAVVRAIRHWRHYLFHREFILYTDHE 2063
            G+G VL Q G P+AYFSEKL+     YSTYD E +A+VR +  W+HYL+ +EF++++DHE
Sbjct: 1052 GLGGVLLQEGKPVAYFSEKLSGPSLNYSTYDKELFALVRTLETWQHYLWPKEFVIHSDHE 1111

Query: 2064 ALKHINSQDSLSARHAAWSAFLQQFTFVVKHQSGITNKVADALSRRHSLLVDMRIEVPGF 2243
            +LKHI SQ  L+ RHA W  F++ F +V+KH+ G  N +ADALSRR+++L  +  ++ G 
Sbjct: 1112 SLKHIRSQAKLNRRHAKWVEFIESFPYVIKHKKGKENVIADALSRRYAMLSQLDFKIFGL 1171

Query: 2244 DSFRELYATDSFFKIILSSLARGDA-SDFILHDGFLFKGICLCVPMCSLRLRLVAELHS- 2417
            ++ +E YA D  FK +L +   G   + F+L +GF+F+   LC+P  S+R+ L+ E H  
Sbjct: 1172 ETIKEQYAHDDDFKNVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVRMLLLQEAHGG 1231

Query: 2418 --TGHVGRDRSIDLVRRQYFWPTLRRDVSRFVARCRICQVSKGTSTNAGLYRPLPIPSQP 2591
               GH G  ++ D++   +FWP +RRDV RFVARC  CQ +K      GLY PLP+PS P
Sbjct: 1232 GLMGHFGVKKTEDILADHFFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVP 1291

Query: 2592 WGALSMDFVLGLPRTQRGHDSIFVVVDRFSKMVHFIPCKRSADAVHVAQLFFREVYRLHG 2771
            W  +SMDFVLGLPRT++G DSIFVVVDRFSKM HFIPC +S DA HVA LFFRE+ RLHG
Sbjct: 1292 WEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFREIVRLHG 1351

Query: 2772 LPVSIVSDRDTRFLSHFWRSLWSMANTELHFSSAYHPQTDGQTEVVNRSLGNLLRCLVGD 2951
            +P +IVSDRDT+FLSHFWR+LW+   T+  FS+  HPQTDGQTEVVNR+L  +LR ++  
Sbjct: 1352 VPNTIVSDRDTKFLSHFWRTLWAKLGTKFLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKK 1411

Query: 2952 TPRAWDIKLSQAEFAHNLALNRSTGLSPFQVVYGFLPRAPVDLLTLPSRTREDRRATDFM 3131
              + W+  L   EFA+N + + +T   PF++VYG LPRAP+DLL  P+  R +  A    
Sbjct: 1412 NIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPHPTSERVNFDAKYRA 1471

Query: 3132 ADLCQVHAATRAKLVDTTAKYKRAADTHRRQLEFSVGDYVWAVLTKDRYPAHDYHKLSAR 3311
              + ++H  T+  +     KYK A    ++ + F  GD VW  L KDR+P     KL  R
Sbjct: 1472 ELMLKLHETTKENIERMNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRFPNLRKSKLLPR 1531

Query: 3312 KIGPVEILEKINPNAYRLRLPNHLRTSDVFNVCHLIPYHGENSFGDETDFDSRANHLQEG 3491
              GP ++L+KIN NAY+L LP     S  FN+  L PY      G+E + +SR   +QEG
Sbjct: 1532 ADGPFKVLQKINDNAYKLELPADFGVSPTFNIADLKPY-----LGEEDELESRTTQMQEG 1586

Query: 3492 KND 3500
            ++D
Sbjct: 1587 EDD 1589


>ref|XP_013749392.1| PREDICTED: uncharacterized protein LOC106451942 [Brassica napus]
          Length = 1733

 Score = 1072 bits (2772), Expect = 0.0
 Identities = 559/1133 (49%), Positives = 728/1133 (64%), Gaps = 31/1133 (2%)
 Frame = +3

Query: 195  DFSSSPVYDDDISAQPPEEFLHGDVGQLLVLQRVCLTPRREDDDSMQRHKLFESTCTVQG 374
            D  S P++D +     P        G LLV +R  L+ + + ++  QR  LF S C +  
Sbjct: 435  DIDSEPIFDKEDCFDYPAH------GPLLVTRR-SLSVQPKTNEKEQRENLFHSRCLISE 487

Query: 375  KICRFIIDSGSCENVVAADAIQKLNLSTEPHPTPYSLAWLQRDNEITVTRRVLLTFSIGG 554
            K+C  IID GSC NV +   ++KL L+T P   P+ L WL    E  V  +V +  +IG 
Sbjct: 488  KVCSLIIDGGSCTNVASDTLVRKLGLATRPLSRPFRLEWLNETGEQYVKEQVTIPLTIG- 546

Query: 555  KYTDSVWCDVVPMDACHLLLGRPWQYDRGVIHDGRQNTYSFLFHGVKVTLLXXXXXXXXT 734
            +Y D V C+V+PMDACH+LLGRPWQ+D+  +HDG  N +SF   G K+TL+         
Sbjct: 547  RYEDEVVCNVLPMDACHILLGRPWQFDKRAVHDGFTNRHSFDHKGKKITLVPLSPLEVHQ 606

Query: 735  DA---------HPRV-----------LSISYSAFARAMDASSFVLLLVSRDV-------S 833
            D           P+              I  S   R++ +    LLLV ++         
Sbjct: 607  DQVQLKKNRDQEPKPDEPESSQRNSNFFIKQSQVKRSLYSQKPFLLLVYKESLMASLSSD 666

Query: 834  ESPNVPSVVAPLLSEFADIFPDELPPGLPPLRMIQHQIDFIPGAKLPNRPHYRMSPSEHE 1013
             +P +PS +  +L +F+D+F DE P GLPP+R I+HQIDF+PGA LPNRP YR +P E +
Sbjct: 667  LAPEIPSELLDILQDFSDVFSDENPKGLPPVRGIEHQIDFVPGASLPNRPAYRTNPVETK 726

Query: 1014 ELRRQIEELLHRGHIRESLSPCAVPALLIPKKDGAWRMCVDSRALNKITVRYSFPIPRLD 1193
            EL++Q+ +LL +GHIRESLSPCAVP LL+PKKDG+WRMCVD RA+N ITV+Y  PIPRLD
Sbjct: 727  ELQKQVGDLLEKGHIRESLSPCAVPVLLVPKKDGSWRMCVDCRAINNITVKYRHPIPRLD 786

Query: 1194 DLLDQLGGATVFSKLDLKSGYHQIRIRPGDEWKTAFKTREGLFEWLVMPFGLSNAPSTFM 1373
            D+LD+L G++VFSK+DLKSGYHQIR++ GDEWKTAFKT+ GL+EWLVMPFGL+NAPSTFM
Sbjct: 787  DMLDELHGSSVFSKIDLKSGYHQIRMKEGDEWKTAFKTKLGLYEWLVMPFGLTNAPSTFM 846

Query: 1374 RIMNQTLRPLIGSCVVVYFDDILVYSKSVHDHLAHLRAVLSILRTECFYAAPSKCVFLTE 1553
            R+MN  LR  IG  VVVYFDDIL+YSK++ DH  HL++VL +LR E  +A   KC F T+
Sbjct: 847  RLMNHILRSFIGHFVVVYFDDILIYSKNLDDHKIHLKSVLDVLRKEKLFANLEKCSFGTD 906

Query: 1554 NVLFLGYRVSATGIGVDDAKIAAIQDWPVPTTLTEVRSFHGLASFYRRFIPHFSTIMAPI 1733
            +V+FLG+ V + G+ VD+ KI AI+DWP PTT+ EVRSFHGLA FYRRF+  FSTI AP+
Sbjct: 907  HVVFLGFVVGSDGLRVDEEKIKAIRDWPSPTTVGEVRSFHGLAGFYRRFVQDFSTIAAPL 966

Query: 1734 TDLM-HGKSFSWPTQAATAFTDIKHKLTHAPLLALPDFSVPFELHSDASKVGIGAVLSQH 1910
            T+++     F W      AF  +K KLTHAPLL LPDFS  FE+  DAS VGIGAVL Q 
Sbjct: 967  TEVIKKNVGFKWEQTQEEAFQILKGKLTHAPLLTLPDFSKTFEIECDASGVGIGAVLMQD 1026

Query: 1911 GHPIAYFSEKLNATRGRYSTYDIEFYAVVRAIRHWRHYLFHREFILYTDHEALKHINSQD 2090
              PIAYFSEKL      Y TYD E YA+VRA++ W+HYL+ +EF+++TDH++LKH+  Q 
Sbjct: 1027 RKPIAYFSEKLGGATLNYPTYDKELYALVRALQTWQHYLWPKEFVIHTDHQSLKHLKGQQ 1086

Query: 2091 SLSARHAAWSAFLQQFTFVVKHQSGITNKVADALSRRHSLLVDMRIEVPGFDSFRELYAT 2270
             L+ RHA W  F++ F +V+K++ G  N VADALS+R+ LL  +  ++ GF+  ++LYAT
Sbjct: 1087 KLNKRHARWVEFIETFPYVIKYKQGKDNVVADALSKRYVLLSALETKLLGFEFIKDLYAT 1146

Query: 2271 DSFFKIILSSLARGDASDFILHDGFLFKGICLCVPMCSLRLRLVAELHS---TGHVGRDR 2441
            DS FK +    ++     +    GFLF    LCVP CSLR   + E H     GH G  +
Sbjct: 1147 DSDFKEVFIKCSKTAYGKYYQASGFLFFDNRLCVPQCSLRELFLREAHGGGLMGHFGVKK 1206

Query: 2442 SIDLVRRQYFWPTLRRDVSRFVARCRICQVSKGTSTNAGLYRPLPIPSQPWGALSMDFVL 2621
            +  +V   ++WP+L +DV R   RC +C+ +K  S N GLY  LPIPS PW  +SMDFVL
Sbjct: 1207 THKVVNEHFYWPSLMKDVERVCGRCVVCKKAKSKSKNQGLYSALPIPSHPWVDISMDFVL 1266

Query: 2622 GLPRTQRGHDSIFVVVDRFSKMVHFIPCKRSADAVHVAQLFFREVYRLHGLPVSIVSDRD 2801
            GLPR++ G DSIFVVVDRFSKM HFIPC ++ DAV VA LFFRE+ RLHG+P +IVSDRD
Sbjct: 1267 GLPRSKSGRDSIFVVVDRFSKMAHFIPCHKTNDAVQVADLFFREIVRLHGMPKTIVSDRD 1326

Query: 2802 TRFLSHFWRSLWSMANTELHFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDTPRAWDIKLS 2981
             +FLS+FW++LWS   T L FS+  HPQTDGQTEVVNR+L  LLR LV    R W+  L 
Sbjct: 1327 AKFLSYFWKTLWSKLGTRLMFSTTCHPQTDGQTEVVNRTLSALLRSLVKKNLRLWEECLP 1386

Query: 2982 QAEFAHNLALNRSTGLSPFQVVYGFLPRAPVDLLTLPSRTREDRRATDFMADLCQVHAAT 3161
              EFA+N +L+ ST  SPF+VVYGF P +P+DLL LP   R           + ++H   
Sbjct: 1387 HVEFAYNHSLHSSTKFSPFEVVYGFNPLSPLDLLPLPLSERVSTDGKRKADTIKKLHETV 1446

Query: 3162 RAKLVDTTAKYKRAADTHRRQLEFSVGDYVWAVLTKDRYPAHDYHKLSARKIGPVEILEK 3341
            RA +   T  Y R A+  ++++ F  GD VW  L K+R+P     KL  R  GP +IL+K
Sbjct: 1447 RANIEAKTEVYTRKANKKKKKVIFEEGDLVWVHLRKERFPEERKSKLMPRVDGPFQILKK 1506

Query: 3342 INPNAYRLRLPNHLRTSDVFNVCHLIPYHGENSFGDETDFDSRANHLQEGKND 3500
            I  NAY+L L      S  FNV  L P+  +       D D   N  QEG ND
Sbjct: 1507 IQDNAYQLDLQGKYDISSSFNVSDLSPFLAD-------DPDLWTNPFQEGGND 1552


>ref|XP_007220740.1| hypothetical protein PRUPE_ppa023598mg [Prunus persica]
            gi|462417202|gb|EMJ21939.1| hypothetical protein
            PRUPE_ppa023598mg [Prunus persica]
          Length = 1457

 Score = 1072 bits (2772), Expect = 0.0
 Identities = 560/1167 (47%), Positives = 744/1167 (63%), Gaps = 31/1167 (2%)
 Frame = +3

Query: 102  CFNCGDPSHLQSACPKRASTRALYVDDVCDADFSSSPVYDDDISAQPPEEFLHGDVGQ-- 275
            C+ C  P H  + CP+   T+A ++++V D D     V +DD +     EF   +  +  
Sbjct: 326  CYRCQKPGHRSNVCPEW--TQANFIEEV-DEDEEKDEVGEDDYAGA---EFAIEERMERI 379

Query: 276  LLVLQRVCLTPRREDDDSMQRHKLFESTCTVQGKICRFIIDSGSCENVVAADAIQKLNLS 455
            +LVLQRV L P+ E     QRH +  S C+++ K+C  I+D+GSCEN V+   ++ L LS
Sbjct: 380  ILVLQRVLLAPKEEG----QRHSICRSLCSIKNKVCDVIVDNGSCENFVSKKLVEHLQLS 435

Query: 456  TEPHPTPYSLAWLQRDNEITVTRRVLLTFSIGGKYTDSVWCDVVPMDACHLLLGRPWQYD 635
            TEPH  PYSL W+++   + V     +  SIG  Y D V CDV+ MDACH+LLG+ WQ+D
Sbjct: 436  TEPHVRPYSLGWVKKGPSVRVAETYSVPLSIGKHYIDDVLCDVIDMDACHILLGQLWQFD 495

Query: 636  RGVIHDGRQNTYSFLFHGVKVTLLXXXXXXXXTDAHPRVLSI-----SYSAFARAMDASS 800
                + GR N   F ++  K+ +          +   R  S      S     + +  + 
Sbjct: 496  VDATYKGRDNVILFSWNNRKIAMATTKPSKQSVEPKTRSSSFLTLISSEQELNKVVKEAE 555

Query: 801  FVLLLVSRDVSE----SPNVPSVVAPLLSEFADIFPDELPPGLPPLRMIQHQIDFIPGAK 968
            +   LV + + +      ++P  V  +LS+F ++  ++LP  LP +R IQH+ID +PGA 
Sbjct: 556  YFCPLVLKGLLKLGRGESDIPQDVQKILSQFQELLSEKLPNELPSMRDIQHRIDLVPGAN 615

Query: 969  LPNRPHYRMSPSEHEELRRQIEELLHRGHIRESLSPCAVPALLIPKKDGAWRMCVDSRAL 1148
            LPN PHYRMSP E++ LR QIEELL +G IRESLSPCAVP LL+PKKD  WRMCVDSRA+
Sbjct: 616  LPNLPHYRMSPKENDILREQIEELLQKGFIRESLSPCAVPVLLVPKKDKTWRMCVDSRAI 675

Query: 1149 NKITVRYSFPIPRLDDLLDQLGGATVFSKLDLKSGYHQIRIRPGDEWKTAFKTREGLFEW 1328
            NKITV+  FPIPRL+D+LD L G+ VFSK+DL+SGYHQIRIRPGDEWKTAFK+++GLFEW
Sbjct: 676  NKITVKSRFPIPRLEDMLDVLSGSRVFSKIDLRSGYHQIRIRPGDEWKTAFKSKDGLFEW 735

Query: 1329 LVMPFGLSNAPSTFMRIMNQTLRPLIGSCVVVYFDDILVYSKSVHDHLAHLRAVLSILRT 1508
            LVMPFGLSNAPSTFMR+MNQ LRP IGS VVVYFDDIL+YS +  +HL HLR VL +LR 
Sbjct: 736  LVMPFGLSNAPSTFMRLMNQVLRPFIGSFVVVYFDDILIYSTTKEEHLVHLRQVLDVLRE 795

Query: 1509 ECFYAAPSKCVFLTENVLFLGYRVSATGIGVDDAKIAAIQDWPVPTTLTEVRSFHGLASF 1688
               Y    KC F T  +LFLG+ V   GI VDD KI AI DWP P  ++EVRSFHGLA+F
Sbjct: 796  NKLYMNLKKCTFCTNKLLFLGFVVGENGIQVDDEKIKAILDWPTPKIVSEVRSFHGLATF 855

Query: 1689 YRRFIPHFSTIMAPITDLMHGKSFSWPTQAATAFTDIKHKLTHAPLLALPDFSVPFELHS 1868
            YRRF+ HFS+I APIT+ +    FSW  +   +F DIK KL  AP+LALP+F   FE+  
Sbjct: 856  YRRFVRHFSSITAPITECLKKGRFSWGDEQERSFADIKEKLCTAPVLALPNFEKVFEVEC 915

Query: 1869 DASKVGIGAVLSQHGHPIAYFSEKLNATRGRYSTYDIEFYAVVRAIRHWRHYLFHREFIL 2048
            DAS VG+GAVLSQ   P+A+FSEKL+    ++STYD EFYAVVRA++ W HYL  +EF+L
Sbjct: 916  DASGVGVGAVLSQDKRPVAFFSEKLSDACQKWSTYDQEFYAVVRALKQWEHYLIQKEFVL 975

Query: 2049 YTDHEALKHINSQDSLSARHAAWSAFLQQFTFVVKHQSGITNKVADALSRRHSLLVDMRI 2228
            +TDH+AL+              W  FLQ+F+FV++H SG TN+V DALSRR SLLV    
Sbjct: 976  FTDHQALR--------------WVTFLQKFSFVIRHTSGKTNRVVDALSRRASLLVTQTQ 1021

Query: 2229 EVPGFDSFRELYATDSFFKIILSSLARGD-ASDFILHDGFLFKGICLCVPMCSLRLRLVA 2405
            EV GF+  +ELY  D  F+ I +     +  +D+ L++G+LFKG  LC+P+ SLR +L+ 
Sbjct: 1022 EVVGFECLKELYEGDDDFREIWTKCTNQEPMADYFLNEGYLFKGNQLCIPVSSLREKLIQ 1081

Query: 2406 ELHS---TGHVGRDRSIDLVRRQYFWPTLRRDVSRFVARCRICQVSKGTSTNAGLYRPLP 2576
            +LH    +GH+GRD++I  ++ +++WP L+RDV   V +C  CQ SKG   N GLY PLP
Sbjct: 1082 DLHGGGLSGHLGRDKTIAGMKERFYWPQLKRDVGTIVRKCYTCQTSKGQVQNTGLYMPLP 1141

Query: 2577 IPSQPWGALSMDFVLGLPRTQRGHDSIFVVVDRFSKMVHFIPCKRSADAVHVAQLFFREV 2756
            +P+  W  L+MDFVLGLPRTQRG DS++VVVDRFS M HFI CK++ DA ++A+L FREV
Sbjct: 1142 VPNDIWQDLAMDFVLGLPRTQRGMDSVYVVVDRFSNMAHFIACKKTDDASNIAKLVFREV 1201

Query: 2757 YRLHGLPVSIVSDRDTRFLSHFWRSLWSMANTELHFSSAYHPQTDGQTEVVNRSLGNLLR 2936
             RLHG+P SI SDRD +FLSHFW +LW +  T L+ SS  HPQTD QTEV  R+LGN++ 
Sbjct: 1202 VRLHGVPTSITSDRDAKFLSHFWITLWRLFGTTLNRSSTTHPQTDSQTEVTTRTLGNMV- 1260

Query: 2937 CLVGDTPRAWDIKLSQAEFAHNLALNRSTGLSPFQVVYGFLPRAPVDLLTLPSRTREDRR 3116
                             EFA+N  ++ +TG SPF +VY  +P   VDL+ LP   +    
Sbjct: 1261 -----------------EFAYNSKIHSATGKSPFSIVYTAIPNHVVDLVKLPRGQQTSVA 1303

Query: 3117 ATDFMADLCQVHAATRAKLVDTTAKYKRAADTHRRQLEFSVGDYVWAVLTKDRYPAHDYH 3296
            A +   ++  V    + KL  T AKYK AAD HRR   F  GD V   L K+R+P   Y 
Sbjct: 1304 AKNLAEEVVAVRDEVKQKLEQTNAKYKAAADRHRRVKVFQEGDSVMIFLRKERFPVGTYS 1363

Query: 3297 KLSARKIGPVEILEKINPNAYRLRLPNHLRTSDVFNVCHL---------IPYHGENSFGD 3449
            KL  +K GP ++L++IN NAY + LP+ +   ++FNV  L          P H   S   
Sbjct: 1364 KLKPKKYGPYKVLKRINDNAYVIELPDSMGIFNIFNVADLYEFREDEVIYPDHNSGSSSS 1423

Query: 3450 E---TDFDSRAN----HLQEGKNDGVE 3509
            E   TD +  A+     L++G++  ++
Sbjct: 1424 EVEGTDVEQMADFIAVELEKGRSGNLQ 1450


>dbj|BAA89466.1| gag-pol polyprotein, partial [Oryza sativa Indica Group]
          Length = 1587

 Score = 1070 bits (2766), Expect = 0.0
 Identities = 558/1200 (46%), Positives = 745/1200 (62%), Gaps = 69/1200 (5%)
 Frame = +3

Query: 102  CFNCGDPSHLQSACPKRASTRALYV------------DDVCDADFSSSPVYDDDISAQPP 245
            C  C    H++  CP   STR + V            D+   A  +++   + D   Q  
Sbjct: 399  CLRCKGYGHVRKDCP---STRVMIVRADGGYYFDSDLDEETYALLATNNAGEGDAPHQD- 454

Query: 246  EEFLHGDVGQ---LLVLQRVCLTPRREDDDSMQRHKLFESTCTVQGKICRFIIDSGSCEN 416
            EE +  +  +    LV+QRV L+ + E  +  Q H LF++ C ++ + C  IID GSC N
Sbjct: 455  EEHIRAEAAEHYESLVVQRV-LSAQMERAEQNQLHTLFQTKCVIKERSCHVIIDGGSCNN 513

Query: 417  VVAADAIQKLNLSTEPHPTPYSLAWLQRDNEITVTRRVLLTFSIGGKYTDSVWCDVVPMD 596
            + +A+ ++KL LST+PHP PY + WL    ++ VTR V + F+I G Y DS+ CDVVPM 
Sbjct: 514  LASAEMVEKLALSTQPHPQPYYIQWLNSSGKVKVTRLVRVHFAI-GSYHDSINCDVVPMQ 572

Query: 597  ACHLLLGRPWQYDRGVIHDGRQNTYSFLFHGVKVTLLXXXXXXXXTDAHPRVLSISYSAF 776
            AC +LLGRPWQ+D+  +H G+ N YSF+ +G K+ L          D   R         
Sbjct: 573  ACSMLLGRPWQFDKDSLHFGKSNQYSFVHNGKKLVLHPMSPEVILKDELARASKQKNQEH 632

Query: 777  ARA----------------------------MDASSFVLLLVSRDVSESPNV-------- 848
             R+                            +  S F+      D  ++  V        
Sbjct: 633  TRSEHLIAANELEKHKKKPTNSVQNNKNEIKLKGSCFIATKSDLDEVDTDTVFCYALVCK 692

Query: 849  ---------PSVVAPLLSEFADIFPDELP----PGLPPLRMIQHQIDFIPGAKLPNRPHY 989
                     P  + P ++     + D  P    PGLPP+R I+HQID IPGA LPNR  Y
Sbjct: 693  ETLFPIEDTPISLRPPVTNLLQEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPY 752

Query: 990  RMSPSEHEELRRQIEELLHRGHIRESLSPCAVPALLIPKKDGAWRMCVDSRALNKITVRY 1169
            R +P E +E++RQ++ELL +G++RESLSPC+VP LL+PKKDG+WRMCVD RA+N IT+RY
Sbjct: 753  RTNPEETKEIQRQVQELLDKGYVRESLSPCSVPVLLVPKKDGSWRMCVDCRAINNITIRY 812

Query: 1170 SFPIPRLDDLLDQLGGATVFSKLDLKSGYHQIRIRPGDEWKTAFKTREGLFEWLVMPFGL 1349
              PIPRLDD+LD+L G+ VFSK+DL+SGYHQIR++ GDEWKTAFKT+ GL+EWLVMPFGL
Sbjct: 813  RHPIPRLDDMLDELSGSLVFSKIDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGL 872

Query: 1350 SNAPSTFMRIMNQTLRPLIGSCVVVYFDDILVYSKSVHDHLAHLRAVLSILRTECFYAAP 1529
            +NAPSTFMR+MN+ LR  IG  VVVYFDDIL+YS+S+ DH  HLRAV   LR    +   
Sbjct: 873  TNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYSRSIEDHHGHLRAVFDALRDARLFGNL 932

Query: 1530 SKCVFLTENVLFLGYRVSATGIGVDDAKIAAIQDWPVPTTLTEVRSFHGLASFYRRFIPH 1709
             KC F T+ V FLGY V+  GI VD AK+ AI  WPVPTT+T+VRSF GLA FYRRF+  
Sbjct: 933  EKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRRFVKD 992

Query: 1710 FSTIMAPITDL-MHGKSFSWPTQAATAFTDIKHKLTHAPLLALPDFSVPFELHSDASKVG 1886
            FSTI AP+ +L     +F+W      AF  +K KLTHAPLL LPDF+  FEL  DAS +G
Sbjct: 993  FSTIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFNKTFELECDASGIG 1052

Query: 1887 IGAVLSQHGHPIAYFSEKLNATRGRYSTYDIEFYAVVRAIRHWRHYLFHREFILYTDHEA 2066
            +G VL Q G P+AYFSEKL+     YSTYD E +A+VR +  W+HYL+ +EF++++DHE+
Sbjct: 1053 LGGVLLQEGKPVAYFSEKLSGPSLNYSTYDKELFALVRTLETWQHYLWPKEFVIHSDHES 1112

Query: 2067 LKHINSQDSLSARHAAWSAFLQQFTFVVKHQSGITNKVADALSRRHSLLVDMRIEVPGFD 2246
            LKHI SQ   + RHA W  F++ F +V+KH+ G  N +ADALSRR+++L  +  ++ G +
Sbjct: 1113 LKHIRSQAKHNRRHAKWVEFIESFPYVIKHKKGKENVIADALSRRYAMLSQLDFKIFGLE 1172

Query: 2247 SFRELYATDSFFKIILSSLARGDA-SDFILHDGFLFKGICLCVPMCSLRLRLVAELHS-- 2417
            + +E YA D  FK +L +   G   + F+L +GF+F+   LC+P  S+ + L+ E H   
Sbjct: 1173 TIKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVHMLLLQEAHGGG 1232

Query: 2418 -TGHVGRDRSIDLVRRQYFWPTLRRDVSRFVARCRICQVSKGTSTNAGLYRPLPIPSQPW 2594
              GH G  +  D++   +FWP  RRDV RFVARC  CQ +K      GLY PLP+PS PW
Sbjct: 1233 LMGHFGVKKMEDILADHFFWPKKRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPW 1292

Query: 2595 GALSMDFVLGLPRTQRGHDSIFVVVDRFSKMVHFIPCKRSADAVHVAQLFFREVYRLHGL 2774
              +SMDFVLGLPRT++G DSIFVVVDRFSKM HFIPC +S DA HVA LFFRE+ RLHG+
Sbjct: 1293 EDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFREIVRLHGV 1352

Query: 2775 PVSIVSDRDTRFLSHFWRSLWSMANTELHFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDT 2954
            P +IVSDRDT+FLSHFWR+LW+   T+L FS+  HPQTDGQTEVVNR+L  +LR ++   
Sbjct: 1353 PNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKN 1412

Query: 2955 PRAWDIKLSQAEFAHNLALNRSTGLSPFQVVYGFLPRAPVDLLTLPSRTREDRRATDFMA 3134
             + W+  L   EFA+N + + +T   PF++VYG LPRAP+DLL LP+  R +  A     
Sbjct: 1413 IKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLPTSERVNFDAKYRAE 1472

Query: 3135 DLCQVHAATRAKLVDTTAKYKRAADTHRRQLEFSVGDYVWAVLTKDRYPAHDYHKLSARK 3314
             + ++H  T+  +     KYK A    ++ + F  GD VW  L KDR+P     KL  R 
Sbjct: 1473 LMLKLHETTKENIERMNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRFPNLRKSKLLPRA 1532

Query: 3315 IGPVEILEKINPNAYRLRLPNHLRTSDVFNVCHLIPYHGENSFGDETDFDSRANHLQEGK 3494
             GP ++L+KIN NAY+L LP     S  FN+  L PY      G+E + +SR   +QEG+
Sbjct: 1533 DGPFKVLQKINDNAYKLELPADFGVSPTFNIADLKPY-----LGEEDELESRTTQMQEGE 1587