BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia27_contig00001794
         (3548 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007200265.1| hypothetical protein PRUPE_ppa015000mg [Prun...   816   0.0  
ref|XP_007032400.1| DNA/RNA polymerases superfamily protein [The...   801   0.0  
gb|ABM55240.1| retrotransposon protein [Beta vulgaris]                798   0.0  
gb|AEV42258.1| hypothetical protein [Beta vulgaris]                   804   0.0  
ref|XP_007044250.1| DNA/RNA polymerases superfamily protein [The...   785   0.0  
gb|ABA98193.1| retrotransposon protein, putative, Ty3-gypsy subc...   764   0.0  
dbj|BAL46523.1| hypothetical protein [Gentiana scabra x Gentiana...   789   0.0  
ref|XP_007213082.1| hypothetical protein PRUPE_ppa021229mg [Prun...   805   0.0  
dbj|BAH79971.1| hypothetical protein [Oryza sativa Indica Group]      799   0.0  
emb|CAH65969.1| H0820C10.2 [Oryza sativa Indica Group]                797   0.0  
dbj|BAH80069.1| putative retrotransposon protein [Oryza sativa I...   797   0.0  
gb|AAM01169.1|AC113336_21 Putative retroelement [Oryza sativa Ja...   797   0.0  
gb|ABB47191.1| retrotransposon protein, putative, Ty3-gypsy subc...   795   0.0  
gb|AAQ56454.1| putative polyprotein [Oryza sativa Japonica Group...   793   0.0  
gb|ABA95022.1| retrotransposon protein, putative, Ty3-gypsy subc...   794   0.0  
gb|AAM93458.1| putative polyprotein [Oryza sativa Japonica Group...   798   0.0  
gb|AAN09852.1| putative polyprotein [Oryza sativa Japonica Group]     795   0.0  
emb|CAH66284.1| OSIGBa0161P06.1 [Oryza sativa Indica Group]           797   0.0  
gb|ABG65971.1| retrotransposon protein, putative, Ty3-gypsy subc...   795   0.0  
gb|AAV31274.1| putative polyprotein [Oryza sativa Japonica Group...   795   0.0  

>ref|XP_007200265.1| hypothetical protein PRUPE_ppa015000mg [Prunus persica]
            gi|462395665|gb|EMJ01464.1| hypothetical protein
            PRUPE_ppa015000mg [Prunus persica]
          Length = 1493

 Score =  816 bits (2109), Expect(2) = 0.0
 Identities = 395/631 (62%), Positives = 498/631 (78%)
 Frame = +1

Query: 928  IXHPYLDKFVIVFIDDILIYSQDKEQHEEHLRIVLETLRQEKLYAKFSKCEFWLDRVVFL 1107
            +  PYLD FVIVFIDDIL+YSQ  E H++HLR+VL TLR+++LYAKFSKC+FWLD VVFL
Sbjct: 703  VFRPYLDHFVIVFIDDILVYSQTLEGHKKHLRVVLRTLRRKQLYAKFSKCQFWLDIVVFL 762

Query: 1108 GHIVTANGIEVDPSKVEAILNWKAPTNVGEVRSFLGLAGYYRRFIQDFSKIAKPLTHLTK 1287
            GH+++A GI VDP KVEAI+NW   T+V E+RSFLGLAGYYRRF++ FS IA PLT LT+
Sbjct: 763  GHVISAEGIYVDPQKVEAIVNWVQSTSVTEIRSFLGLAGYYRRFVEGFSSIAAPLTRLTR 822

Query: 1288 KNEKFQWTDQCENNFQELKQRLVTSPILTIPDGTEGFVIYTDASKLGLGCVLMQNGKVIA 1467
            K+  F+WT++CE +FQELK+RL T+P+L +PD    FVIY+DAS  GLGCVLMQ+ +VIA
Sbjct: 823  KDIAFEWTEECEQSFQELKKRLTTAPVLALPDNAGNFVIYSDASLQGLGCVLMQHDRVIA 882

Query: 1468 YASRQLKTHEQNYPTHDLELAAVVHALKIWRHHLYGGKCEIFTDHKSLKYFFTQKELNMR 1647
            YASRQLK HEQNYP HDLELAAVV ALKIWRH+LYG  C+IFTDHKSLKYFFTQ+ELNMR
Sbjct: 883  YASRQLKKHEQNYPVHDLELAAVVFALKIWRHYLYGETCQIFTDHKSLKYFFTQRELNMR 942

Query: 1648 QRRWLELVKDYDCTIQYHPGKANVVADALSRKNSGQIATLLTQQESILRDFSNLRLEILR 1827
            QRRWLEL+KDYDCTI+Y+PG+ANVVADALSRK +G +  L T    +L +     +E+  
Sbjct: 943  QRRWLELIKDYDCTIEYYPGRANVVADALSRKTTGSLTHLRTTYLPLLVELRKDGVEL-- 1000

Query: 1828 PPNQSDAVISSLIVQPTLRQRIKDAQKTDIFLNKMKQRVLAGSIQGFAIAPDETLVYDGR 2007
               Q   +++SL V+P L +RI  AQ  D  L +++  V +GS + +AI  D  LV   R
Sbjct: 1001 EMTQQGGILASLHVRPILVERIIVAQLGDPTLCRIRGEVESGSRKDYAIRGDGALVTGTR 1060

Query: 2008 LCVPKDEDLRKEILDEAHNTPYTAHPGGTKMYRDLREIFWWRNMKRTIGKFVERCLICQQ 2187
            L VPK++ L++EIL+EAH + YT HPG TKMYR LRE + W +MK  I K+V RCLICQQ
Sbjct: 1061 LHVPKNDYLKREILEEAHCSTYTMHPGSTKMYRTLREYYSWPHMKGDIAKYVSRCLICQQ 1120

Query: 2188 VKAEHQRPSGLLNPLDIPEWKWEHITMDFVTGLPRSVRKNDAIWVIVDRLTKSAHFIPVR 2367
            VKAE Q+PSGL+ PL IPEWKWE ITMDFV  LPR+ + +D IWVIVDRLTKS HF+P++
Sbjct: 1121 VKAERQKPSGLMQPLPIPEWKWERITMDFVFKLPRTSKGHDGIWVIVDRLTKSTHFLPIK 1180

Query: 2368 MTFTMDRFAQLYIEKIVSLHGVPVSIVSDRDPRFTSKFWESLHAAMKTKLKFSTAYHPQT 2547
             T+++ + A+L++++IV LHG PVSIVSDRD RFTS+FW+ L  AM T+L+FSTA+HPQT
Sbjct: 1181 ETYSLTKLAKLFVDEIVRLHGAPVSIVSDRDARFTSRFWKCLQEAMGTRLQFSTAFHPQT 1240

Query: 2548 DGQSERTIQTLEDMLRTVVLDLDGSWETYLPLVEFAYNNSYQATIKMAPYEALYGRKCRS 2727
            DGQSERTIQTLEDMLR+ VL +  SW+T+L LVEFAYNNSY A+IKMAPYEALYGR+CR+
Sbjct: 1241 DGQSERTIQTLEDMLRSCVLQMKDSWDTHLALVEFAYNNSYHASIKMAPYEALYGRQCRT 1300

Query: 2728 PANWDEVGERRIFGPEIIERTVGVIAKIRDR 2820
            P  W+EVG++++   + I+ T   +  I+++
Sbjct: 1301 PICWNEVGDKKLEKVDSIQATTEKVKMIKEK 1331



 Score =  304 bits (778), Expect(2) = 0.0
 Identities = 146/306 (47%), Positives = 210/306 (68%)
 Frame = +3

Query: 12   ETMTGMLPVFHIPALVLFDTGASHSFMSENFRRKLGLNCCDNNEALEVSIPSGETIKTKK 191
            + +TGM+P+F   A VL D GA+HSF++ NF   + +       +  +S+P+GE +   +
Sbjct: 363  DVITGMIPIFGYLARVLIDPGATHSFVAHNFIPYISIRPTPITGSFSISLPTGEVLYADR 422

Query: 192  TAREVELTISGQQMKADLYVLEMRDFDVILGIDWLSKNRATIKCYDREIEFEGSNGNRFV 371
              R   + +    ++A+L  L++ D D+ILG+DWL K+ A++ C+ +E+        +  
Sbjct: 423  VFRNCFVQVDDAWLEANLIPLDLVDLDIILGMDWLEKHHASVDCFRKEVTLRSPGQPKVT 482

Query: 372  FHGAKTNTRVKIVSAIKAIRMLRKRDCQGFLVNIKGKETNERKATDEAVVKEFLDVFPDD 551
            F G +      ++SAI A ++L+K   +G+L +I           D  VV EF ++FPDD
Sbjct: 483  FRGERRVLPTCLISAITAKKLLKK-GYEGYLAHIIDTREITLNLEDIPVVCEFPNIFPDD 541

Query: 552  LPGIPPDRQVEFTIDLVPGAAPMSKAPYRMAPKELQELKIQIQDLLDKKFIRPSVSPWGA 731
            LPG+PP R++EFTID +PG  P+ + PYRMAP EL+ELKIQ+Q+L+D +FIRPSVSPWGA
Sbjct: 542  LPGLPPKREIEFTIDFLPGTNPIYQTPYRMAPAELRELKIQLQELVDLRFIRPSVSPWGA 601

Query: 732  PVLFVKKKDGSFRMCIDYRDLNRLTIKNKYPLPRIEDLFDQLKGASVFSKIDLRSGYHQL 911
            PVLFV+K+DG+ R+CIDYR LN++TI+N+YPLPRI+DLFDQLKGA  FSKIDLRSGYHQL
Sbjct: 602  PVLFVRKQDGTMRLCIDYRQLNKVTIRNRYPLPRIDDLFDQLKGAKYFSKIDLRSGYHQL 661

Query: 912  KINDCD 929
            +I + D
Sbjct: 662  RIREED 667



 Score =  128 bits (321), Expect = 3e-26
 Identities = 61/116 (52%), Positives = 80/116 (68%)
 Frame = +3

Query: 2877 KKGKLRPRYIGPFEILDRIGDVAYRLALPPELAAVHNVFHISMLRKYIADPSHIINHEEL 3056
            K+GKL PRYIGP+EI +RIG VAYRLALP EL+ VH+VFH+SMLRKY++DPSHI+ ++ +
Sbjct: 1373 KRGKLSPRYIGPYEITERIGPVAYRLALPAELSQVHDVFHVSMLRKYMSDPSHILEYQPV 1432

Query: 3057 DVSNNLAYEESPVAILGKKVHKLRNREVPLVLVQWSRHGXXXXXXXXXXXXXXKYP 3224
            +V  +L+YEE PV IL +K   LR+R +P+V V W                  KYP
Sbjct: 1433 EVEEDLSYEEQPVQILDRKEQMLRSRFIPVVKVLWRSQTVEEATWEPEAQMRVKYP 1488


>ref|XP_007032400.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
            gi|508711429|gb|EOY03326.1| DNA/RNA polymerases
            superfamily protein [Theobroma cacao]
          Length = 1447

 Score =  801 bits (2070), Expect(2) = 0.0
 Identities = 376/631 (59%), Positives = 476/631 (75%)
 Frame = +1

Query: 928  IXHPYLDKFVIVFIDDILIYSQDKEQHEEHLRIVLETLRQEKLYAKFSKCEFWLDRVVFL 1107
            +  PYLDKFV+VFIDDILIYS+ +E+HE+HL+IVL+ LR+ +LYAKFSKCEFWL+ V FL
Sbjct: 686  VFKPYLDKFVVVFIDDILIYSKSREEHEQHLKIVLQILREHRLYAKFSKCEFWLESVAFL 745

Query: 1108 GHIVTANGIEVDPSKVEAILNWKAPTNVGEVRSFLGLAGYYRRFIQDFSKIAKPLTHLTK 1287
            GH+V+  GI VD  K+EA+  W  PT+V E+RSF+GLAGYYRRF++DFSKI  PLT LT+
Sbjct: 746  GHVVSKEGIRVDTKKIEAVEKWPRPTSVSEIRSFVGLAGYYRRFVKDFSKIVAPLTKLTR 805

Query: 1288 KNEKFQWTDQCENNFQELKQRLVTSPILTIPDGTEGFVIYTDASKLGLGCVLMQNGKVIA 1467
            K+ KF+W+D CEN+F++LK  L T+P+L++P GT G+ ++ DAS +GLGCVLMQ+GKVIA
Sbjct: 806  KDTKFEWSDACENSFEKLKACLTTAPVLSLPQGTGGYTMFCDASGVGLGCVLMQHGKVIA 865

Query: 1468 YASRQLKTHEQNYPTHDLELAAVVHALKIWRHHLYGGKCEIFTDHKSLKYFFTQKELNMR 1647
            YASRQLK HEQNYP HDLE+AA+V ALKIWRH+LYG  CEI+TDHKSLKY F Q++LN+R
Sbjct: 866  YASRQLKRHEQNYPIHDLEMAAIVFALKIWRHYLYGETCEIYTDHKSLKYIFQQRDLNLR 925

Query: 1648 QRRWLELVKDYDCTIQYHPGKANVVADALSRKNSGQIATLLTQQESILRDFSNLRLEILR 1827
            Q RW+EL+KDYDCTI YHPGKANVVADALSRK+ G +A +                    
Sbjct: 926  QCRWMELLKDYDCTILYHPGKANVVADALSRKSMGSLAHI-------------------- 965

Query: 1828 PPNQSDAVISSLIVQPTLRQRIKDAQKTDIFLNKMKQRVLAGSIQGFAIAPDETLVYDGR 2007
                        IV+P L  +IK+AQ  D F+ K  +       + F    D  L Y  R
Sbjct: 966  -----------SIVRPILMDKIKEAQSKDEFVIKALEDPQGRKGKMFTKGTDGVLRYGTR 1014

Query: 2008 LCVPKDEDLRKEILDEAHNTPYTAHPGGTKMYRDLREIFWWRNMKRTIGKFVERCLICQQ 2187
            L VP  + LR+EIL+EAH   Y  HPG TKMY+DL+E++WW  +KR + +FV +CL+CQQ
Sbjct: 1015 LYVPDGDGLRREILEEAHMAAYVVHPGATKMYQDLKEVYWWEGLKRDVAEFVSKCLVCQQ 1074

Query: 2188 VKAEHQRPSGLLNPLDIPEWKWEHITMDFVTGLPRSVRKNDAIWVIVDRLTKSAHFIPVR 2367
            VKAEHQ+P+GLL PL +PEWKWEHI MDFVTGLPR+    D+IW++VDRLTKSAHF+PV+
Sbjct: 1075 VKAEHQKPAGLLQPLPVPEWKWEHIAMDFVTGLPRTSGGYDSIWIVVDRLTKSAHFLPVK 1134

Query: 2368 MTFTMDRFAQLYIEKIVSLHGVPVSIVSDRDPRFTSKFWESLHAAMKTKLKFSTAYHPQT 2547
             T+   ++A++Y+++IV LHG+P+SIVSDR  +FTS+FW  L  A+ TKL FSTA+HPQT
Sbjct: 1135 TTYGAAQYARVYVDEIVRLHGIPISIVSDRGAQFTSRFWGKLQEALGTKLDFSTAFHPQT 1194

Query: 2548 DGQSERTIQTLEDMLRTVVLDLDGSWETYLPLVEFAYNNSYQATIKMAPYEALYGRKCRS 2727
            DGQSERTIQTLE MLR  V+DL   WE YLPLVEFAYNNS+Q +I+MAP+EALYGR+CRS
Sbjct: 1195 DGQSERTIQTLEAMLRACVIDLGVRWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCRS 1254

Query: 2728 PANWDEVGERRIFGPEIIERTVGVIAKIRDR 2820
            P  W EVGER++ GPE+++     I  IR R
Sbjct: 1255 PIGWLEVGERKLLGPELVQDATEKIHMIRQR 1285



 Score =  312 bits (799), Expect(2) = 0.0
 Identities = 158/307 (51%), Positives = 208/307 (67%)
 Frame = +3

Query: 9    NETMTGMLPVFHIPALVLFDTGASHSFMSENFRRKLGLNCCDNNEALEVSIPSGETIKTK 188
            N  ++G+L V ++ A VLFD GA+HSF+S  F  +LG       E L VS P  E    +
Sbjct: 345  NAVVSGILSVCNMNARVLFDPGATHSFISTCFASRLGRGRVRREEQLVVSTPLKEIFVAE 404

Query: 189  KTAREVELTISGQQMKADLYVLEMRDFDVILGIDWLSKNRATIKCYDREIEFEGSNGNRF 368
                   + +  +    +L VL+  DFDVILG++WLS   A++ CY + + F+      F
Sbjct: 405  WEYESCVVRVKDKDTSVNLVVLDTLDFDVILGMNWLSPCHASVDCYHKLVRFDFPGEPSF 464

Query: 369  VFHGAKTNTRVKIVSAIKAIRMLRKRDCQGFLVNIKGKETNERKATDEAVVKEFLDVFPD 548
               G ++N    ++S I A R+LR+  C G+L  +K  +      T  +VVKEF+DVFP+
Sbjct: 465  SIQGDRSNAPTNLISVISARRLLRQ-GCIGYLAVVKDSQAKIGDVTQVSVVKEFVDVFPE 523

Query: 549  DLPGIPPDRQVEFTIDLVPGAAPMSKAPYRMAPKELQELKIQIQDLLDKKFIRPSVSPWG 728
            +LP +PP+R+VEF IDL+P   P+S  PYRMAP EL+ELK Q++DLLDK FIRPSVSPWG
Sbjct: 524  ELPSLPPEREVEFCIDLIPDTRPISIPPYRMAPAELKELKDQLEDLLDKGFIRPSVSPWG 583

Query: 729  APVLFVKKKDGSFRMCIDYRDLNRLTIKNKYPLPRIEDLFDQLKGASVFSKIDLRSGYHQ 908
            APVLFVKKKDGS R+CIDYR LN++T+KNKYPLPRI+DLFDQL+GA  FSKIDLRSGYHQ
Sbjct: 584  APVLFVKKKDGSLRLCIDYRQLNKVTVKNKYPLPRIDDLFDQLQGAQCFSKIDLRSGYHQ 643

Query: 909  LKINDCD 929
            L+I + D
Sbjct: 644  LRIRNED 650



 Score =  132 bits (332), Expect = 2e-27
 Identities = 62/118 (52%), Positives = 83/118 (70%)
 Frame = +3

Query: 2877 KKGKLRPRYIGPFEILDRIGDVAYRLALPPELAAVHNVFHISMLRKYIADPSHIINHEEL 3056
            KKGKL PRYIGPFEIL+++G VAYRLALPP+L+ +H VFH+SMLRKY  DPSH+I +E +
Sbjct: 1327 KKGKLSPRYIGPFEILEKVGAVAYRLALPPDLSNIHPVFHVSMLRKYNPDPSHVIRYETI 1386

Query: 3057 DVSNNLAYEESPVAILGKKVHKLRNREVPLVLVQWSRHGXXXXXXXXXXXXXXKYPNI 3230
             + ++L YEE PVAIL ++V KLR+++V  V V W  H               K+P++
Sbjct: 1387 QLQDDLTYEEQPVAILDRQVKKLRSKDVASVKVLWRNHTSEEVTWEAEDEMRTKHPHL 1444


>gb|ABM55240.1| retrotransposon protein [Beta vulgaris]
          Length = 1501

 Score =  798 bits (2060), Expect(2) = 0.0
 Identities = 378/632 (59%), Positives = 484/632 (76%), Gaps = 1/632 (0%)
 Frame = +1

Query: 928  IXHPYLDKFVIVFIDDILIYSQDKEQHEEHLRIVLETLRQEKLYAKFSKCEFWLDRVVFL 1107
            I H +LDKFV+VFIDDILIYS+++ +H+EHLRI+LETLR+ +LYAKFSKCEF L++V FL
Sbjct: 700  IFHEFLDKFVVVFIDDILIYSRNETEHDEHLRIILETLRKNQLYAKFSKCEFRLEKVAFL 759

Query: 1108 GHIVTANGIEVDPSKVEAILNWKAPTNVGEVRSFLGLAGYYRRFIQDFSKIAKPLTHLTK 1287
            GH V+  G+ VDP+K++A+  W  P +V ++RSFLGLAGYYRRF++DFSKIA+P+T+L K
Sbjct: 760  GHFVSKEGVSVDPAKIQAVSEWPTPKSVTDIRSFLGLAGYYRRFVRDFSKIARPMTNLMK 819

Query: 1288 KNEKFQWTDQCENNFQELKQRLVTSPILTIPDGTEGFVIYTDASKLGLGCVLMQNGKVIA 1467
            K  KF+W ++CE  FQ LK RL T+P+LT+PDG EGF +Y+DASK GLGCVL QNGKVIA
Sbjct: 820  KETKFEWNEKCEEAFQILKDRLTTAPVLTLPDGNEGFEVYSDASKNGLGCVLQQNGKVIA 879

Query: 1468 YASRQLKTHEQNYPTHDLELAAVVHALKIWRHHLYGGKCEIFTDHKSLKYFFTQKELNMR 1647
            YAS QLK +E NYPTHDLELAA+V ALKIWRH+LYG  C+IFTDHKSLKY FTQK+LNMR
Sbjct: 880  YASCQLKPYEANYPTHDLELAAIVFALKIWRHYLYGATCKIFTDHKSLKYIFTQKDLNMR 939

Query: 1648 QRRWLELVKDYDCTIQYHPGKANVVADALSRKNSGQIATLLTQQESILRDFSNLRLEILR 1827
            QRRWLEL+KDYD  IQYH GKANVVADALSRK+S  ++TL+  +E + RD   L LEIL 
Sbjct: 940  QRRWLELIKDYDLDIQYHEGKANVVADALSRKSSHSLSTLIVPEE-LCRDMKRLNLEILN 998

Query: 1828 PPNQSDAVISSLIVQPTLRQRIKDAQKTDIFLNKMKQRVLAGSIQGFAIAPDETLVYDGR 2007
             P +S+A +S+L +  ++   I + Q  D  L+K+K+++  G    F I  D +L + GR
Sbjct: 999  -PGESEARLSNLSLGVSIFDEIIEGQVGDEHLDKIKEKMKQGKEIDFKIHEDGSLRFKGR 1057

Query: 2008 LCVP-KDEDLRKEILDEAHNTPYTAHPGGTKMYRDLREIFWWRNMKRTIGKFVERCLICQ 2184
             CVP K  DL++ ++DE HNTPY+ HPGG K+Y+DL+ I+WW NMKR + ++V +CL CQ
Sbjct: 1058 WCVPQKCNDLKRRLMDEGHNTPYSVHPGGDKLYKDLKVIYWWPNMKREVAEYVSKCLTCQ 1117

Query: 2185 QVKAEHQRPSGLLNPLDIPEWKWEHITMDFVTGLPRSVRKNDAIWVIVDRLTKSAHFIPV 2364
            +VK +H+RP G + PL++P WKW+ I+MDFVT LP+S   ND IWVIVDRLTKSA FIP+
Sbjct: 1118 KVKIDHKRPMGTVQPLEVPGWKWDSISMDFVTALPKSRSGNDTIWVIVDRLTKSAVFIPI 1177

Query: 2365 RMTFTMDRFAQLYIEKIVSLHGVPVSIVSDRDPRFTSKFWESLHAAMKTKLKFSTAYHPQ 2544
            + T+   + A  YI+ +V LHGVP  I+SDRD RF SKFW+ + A + T LK STA+HP 
Sbjct: 1178 KETWKKKQLATTYIKHVVRLHGVPKDIISDRDSRFLSKFWKKVQANLGTTLKMSTAFHPA 1237

Query: 2545 TDGQSERTIQTLEDMLRTVVLDLDGSWETYLPLVEFAYNNSYQATIKMAPYEALYGRKCR 2724
            TDGQ+ERT QT+EDMLR   +D  GSWE  L L+EF+YNNSY A+IKMAP+EALYGRKCR
Sbjct: 1238 TDGQTERTNQTMEDMLRACAIDFQGSWEDQLDLIEFSYNNSYHASIKMAPFEALYGRKCR 1297

Query: 2725 SPANWDEVGERRIFGPEIIERTVGVIAKIRDR 2820
            SP  W++  E  + G E IE TV  +  I+ R
Sbjct: 1298 SPICWNDYSENVVLGTEFIEETVKNVRLIQAR 1329



 Score =  300 bits (767), Expect(2) = 0.0
 Identities = 154/307 (50%), Positives = 211/307 (68%), Gaps = 1/307 (0%)
 Frame = +3

Query: 12   ETMTGMLPVFHIPALVLFDTGASHSFMSENFRRKLGLNCCDNNEALEVSIPSGETIKTKK 191
            + +TG   +  +    LFD+GA++SF+S +  + LGL   ++ + L VSIP+GE +K  K
Sbjct: 360  DVVTGNFSINSVFVKTLFDSGATYSFISPSVLKSLGLVEHESID-LSVSIPTGEVVKCTK 418

Query: 192  TAREVELTISGQQMKADLYVLEMRDFDVILGIDWLSKNRATIKCYDREIEFEGSNGNRFV 371
              + + L I G    ++L    + D DVILG++WLS  +A I C  +++     +G    
Sbjct: 419  LFKNLPLKIGGSVFPSELIEFNLGDLDVILGMNWLSLYKARIDCEVQKVVLRNPSGKFTS 478

Query: 372  FHGAKTNTRVKIVSAIKAIRMLRKRDCQGFLVNIKG-KETNERKATDEAVVKEFLDVFPD 548
            +          ++SA++  +++RK  C+ F  +++   +  E K  D ++V EF+DVFP 
Sbjct: 479  YRRFGKPKNFGVISALQVQKLMRK-GCELFFCSVQDVSKEAELKLEDVSIVNEFMDVFPS 537

Query: 549  DLPGIPPDRQVEFTIDLVPGAAPMSKAPYRMAPKELQELKIQIQDLLDKKFIRPSVSPWG 728
            ++ G+PP R VEFTIDLVPG AP+SKAPYRMAP E+ ELK Q+Q+LLDK +IRPS SPWG
Sbjct: 538  EISGMPPARAVEFTIDLVPGTAPISKAPYRMAPPEMSELKTQLQELLDKGYIRPSASPWG 597

Query: 729  APVLFVKKKDGSFRMCIDYRDLNRLTIKNKYPLPRIEDLFDQLKGASVFSKIDLRSGYHQ 908
            APVLFVKKKDGS R+CIDYR+LN +TIKNKYPLPRI+DLFDQL GASVFSKIDLRSGYHQ
Sbjct: 598  APVLFVKKKDGSMRLCIDYRELNNVTIKNKYPLPRIDDLFDQLNGASVFSKIDLRSGYHQ 657

Query: 909  LKINDCD 929
            L++ D D
Sbjct: 658  LRVADKD 664



 Score =  121 bits (304), Expect = 3e-24
 Identities = 60/130 (46%), Positives = 81/130 (62%)
 Frame = +3

Query: 2877 KKGKLRPRYIGPFEILDRIGDVAYRLALPPELAAVHNVFHISMLRKYIADPSHIINHEEL 3056
            KKGKL  +Y+GP+EIL+RIG VAYRLALP E   +H+VFHIS L++YI D  H++  E +
Sbjct: 1371 KKGKLSAKYVGPYEILERIGKVAYRLALPMEFEKMHDVFHISQLKRYIPDERHVLEPERV 1430

Query: 3057 DVSNNLAYEESPVAILGKKVHKLRNREVPLVLVQWSRHGXXXXXXXXXXXXXXKYPNIHN 3236
             + ++L YEE PV IL +KV   RN++V +V V WS H               KYP++  
Sbjct: 1431 QIDSSLTYEERPVKILDRKVRSTRNKDVHIVKVLWSNHESEEATWEAEEDMKKKYPDLFL 1490

Query: 3237 *VSRISRTKF 3266
             VS    T+F
Sbjct: 1491 EVSYEGVTRF 1500


>gb|AEV42258.1| hypothetical protein [Beta vulgaris]
          Length = 1553

 Score =  804 bits (2077), Expect(2) = 0.0
 Identities = 370/632 (58%), Positives = 494/632 (78%), Gaps = 1/632 (0%)
 Frame = +1

Query: 928  IXHPYLDKFVIVFIDDILIYSQDKEQHEEHLRIVLETLRQEKLYAKFSKCEFWLDRVVFL 1107
            I  PYLDKFV+VFIDDILIYS++KE+HE+HLR++L+TLR  +LYAKFSKCEFWL+RV FL
Sbjct: 732  IFRPYLDKFVVVFIDDILIYSKNKEEHEDHLRVILQTLRDNQLYAKFSKCEFWLERVSFL 791

Query: 1108 GHIVTANGIEVDPSKVEAILNWKAPTNVGEVRSFLGLAGYYRRFIQDFSKIAKPLTHLTK 1287
            GH ++  G+ VDP+K++A+  W  P NV ++RSFLGLAGYYRRF++DFSKIAKP+T+L K
Sbjct: 792  GHFISKEGVLVDPAKIKAVSEWPTPKNVTDIRSFLGLAGYYRRFVKDFSKIAKPMTNLMK 851

Query: 1288 KNEKFQWTDQCENNFQELKQRLVTSPILTIPDGTEGFVIYTDASKLGLGCVLMQNGKVIA 1467
            K+ +F W +  E  FQ LK+RL ++P+LT+P+G EG+ +Y+DASK GLGCVLMQNGKVIA
Sbjct: 852  KDCRFTWNEDSEKAFQTLKERLTSAPVLTLPNGNEGYDVYSDASKNGLGCVLMQNGKVIA 911

Query: 1468 YASRQLKTHEQNYPTHDLELAAVVHALKIWRHHLYGGKCEIFTDHKSLKYFFTQKELNMR 1647
            YASRQLK +E NYPTHDLELAA+V ALKIWRH+LYG  C IFTDHKSLKY FTQK+LNMR
Sbjct: 912  YASRQLKPYEVNYPTHDLELAAIVFALKIWRHYLYGVTCRIFTDHKSLKYIFTQKDLNMR 971

Query: 1648 QRRWLELVKDYDCTIQYHPGKANVVADALSRKNSGQIATLLTQQESILRDFSNLRLEILR 1827
            QRRWLEL+KDYD  IQYH GKANVVADALSRK+S  + TL+   + +  +FS L++E++ 
Sbjct: 972  QRRWLELIKDYDLDIQYHEGKANVVADALSRKSSHSLNTLVV-ADKLCEEFSRLQIEVVH 1030

Query: 1828 PPNQSDAVISSLIVQPTLRQRIKDAQKTDIFLNKMKQRVLAGSIQGFAIAPDETLVYDGR 2007
               + + ++S+L ++P   + I+ +Q  D+ L ++K ++  G  +GFAI  D ++ Y GR
Sbjct: 1031 -EGEVERLLSALTIEPNFLEEIRASQPGDVKLERVKAKLKEGKAEGFAIHEDGSIRYKGR 1089

Query: 2008 LCVP-KDEDLRKEILDEAHNTPYTAHPGGTKMYRDLREIFWWRNMKRTIGKFVERCLICQ 2184
             CVP K E+L+++I+ E HNT Y  HPGG K+Y+DL+++FWW  MKR + +FV +CL CQ
Sbjct: 1090 WCVPQKCEELKQKIMSEGHNTTYYVHPGGDKLYKDLKKMFWWPGMKRAVAEFVSKCLTCQ 1149

Query: 2185 QVKAEHQRPSGLLNPLDIPEWKWEHITMDFVTGLPRSVRKNDAIWVIVDRLTKSAHFIPV 2364
            +VK+EH+RP G + PLDIP WKW+ I+MDFV  LPRS   N+ IWVIVDRLTK+A FIP+
Sbjct: 1150 KVKSEHKRPQGKIQPLDIPTWKWDSISMDFVVALPRSRGGNNTIWVIVDRLTKTARFIPM 1209

Query: 2365 RMTFTMDRFAQLYIEKIVSLHGVPVSIVSDRDPRFTSKFWESLHAAMKTKLKFSTAYHPQ 2544
            + T++M+  A+ Y++ ++ LHGVP SIVSD+D RF S FW+ +  A  ++L  STA+HP 
Sbjct: 1210 KDTWSMEALAKAYVKNVIRLHGVPTSIVSDQDSRFLSNFWKKVQEAFGSELLMSTAFHPA 1269

Query: 2545 TDGQSERTIQTLEDMLRTVVLDLDGSWETYLPLVEFAYNNSYQATIKMAPYEALYGRKCR 2724
            TDGQ+ERTIQTLEDMLR   L+  GSWE +L L+EF+YNNSY A+IKMAP+EALYGRKCR
Sbjct: 1270 TDGQTERTIQTLEDMLRACALEYQGSWEDHLDLIEFSYNNSYHASIKMAPFEALYGRKCR 1329

Query: 2725 SPANWDEVGERRIFGPEIIERTVGVIAKIRDR 2820
            SP  W+++ E  + GP++I+ T+  +  I+++
Sbjct: 1330 SPLCWNDISETVVLGPDMIQETMDQVRVIQEK 1361



 Score =  292 bits (747), Expect(2) = 0.0
 Identities = 148/306 (48%), Positives = 206/306 (67%)
 Frame = +3

Query: 12   ETMTGMLPVFHIPALVLFDTGASHSFMSENFRRKLGLNCCDNNEALEVSIPSGETIKTKK 191
            + +TG   +   P  VLFD+GAS SF++    R L L     + ++ + IPSGET+   K
Sbjct: 393  DVVTGTFSINSTPVKVLFDSGASLSFIAHATVRNLTL-VESESISMPIVIPSGETVNCSK 451

Query: 192  TAREVELTISGQQMKADLYVLEMRDFDVILGIDWLSKNRATIKCYDREIEFEGSNGNRFV 371
               +V L I      +DL    + + D+ILG+DWL K  A I C  +++E +  +G R  
Sbjct: 452  RFLKVPLKIGEGYFPSDLIEFNLSNLDIILGMDWLGKYMARIDCDAQKVELKDPSGKRVS 511

Query: 372  FHGAKTNTRVKIVSAIKAIRMLRKRDCQGFLVNIKGKETNERKATDEAVVKEFLDVFPDD 551
            +        +K+++A++    + K     F+ +++  E +  +  D  +V+EF DVFP++
Sbjct: 512  YRRIPREPGIKVINALQLKNYVDK-GWPLFMCSVRRVEDDPLRPEDVPIVREFQDVFPEE 570

Query: 552  LPGIPPDRQVEFTIDLVPGAAPMSKAPYRMAPKELQELKIQIQDLLDKKFIRPSVSPWGA 731
            +PG+PP R VEFT+DLVPG  P+SKA YRMAP E+ ELK Q+++LLDK +IRPS+SPWGA
Sbjct: 571  IPGMPPRRDVEFTVDLVPGTGPISKATYRMAPAEMNELKNQLEELLDKGYIRPSMSPWGA 630

Query: 732  PVLFVKKKDGSFRMCIDYRDLNRLTIKNKYPLPRIEDLFDQLKGASVFSKIDLRSGYHQL 911
            PVLFVKKKDGS R+CIDYR+LN +T+KNKYPLPRI+DLFDQL+GA +FSKIDLRSGYHQL
Sbjct: 631  PVLFVKKKDGSLRLCIDYRELNNVTVKNKYPLPRIDDLFDQLQGAGMFSKIDLRSGYHQL 690

Query: 912  KINDCD 929
            +I D D
Sbjct: 691  RIVDHD 696



 Score =  118 bits (296), Expect = 3e-23
 Identities = 55/118 (46%), Positives = 74/118 (62%)
 Frame = +3

Query: 2877 KKGKLRPRYIGPFEILDRIGDVAYRLALPPELAAVHNVFHISMLRKYIADPSHIINHEEL 3056
            KKGKL P++IGP+EIL R+G VAYRL LP +L  VHNVFH+S LR+Y+ D SH++  E +
Sbjct: 1403 KKGKLSPKFIGPYEILARVGKVAYRLDLPNDLERVHNVFHVSQLRRYVPDASHVLEPENV 1462

Query: 3057 DVSNNLAYEESPVAILGKKVHKLRNREVPLVLVQWSRHGXXXXXXXXXXXXXXKYPNI 3230
            ++   L+YEE PV IL +KV   RN++V +V V W                  KYP +
Sbjct: 1463 EIDETLSYEEKPVQILDRKVRSTRNKDVRIVKVLWRNQTTEEATWEAEDAMRLKYPEL 1520


>ref|XP_007044250.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
            gi|508708185|gb|EOY00082.1| DNA/RNA polymerases
            superfamily protein [Theobroma cacao]
          Length = 1515

 Score =  785 bits (2026), Expect(2) = 0.0
 Identities = 380/631 (60%), Positives = 469/631 (74%)
 Frame = +1

Query: 928  IXHPYLDKFVIVFIDDILIYSQDKEQHEEHLRIVLETLRQEKLYAKFSKCEFWLDRVVFL 1107
            + HPYLDKFVIVFIDDIL+YS+D ++H  HLRIVL+TLR+ +LYAKFSKCEFWL  VVFL
Sbjct: 717  VFHPYLDKFVIVFIDDILVYSRDNDEHAAHLRIVLQTLRERQLYAKFSKCEFWLQEVVFL 776

Query: 1108 GHIVTANGIEVDPSKVEAILNWKAPTNVGEVRSFLGLAGYYRRFIQDFSKIAKPLTHLTK 1287
            GHIV+  GI VDP KVEAIL W+ P  V E+RSFLGLAGYYRRF+Q FS +A PLT LT+
Sbjct: 777  GHIVSRTGIYVDPKKVEAILQWEQPKTVTEIRSFLGLAGYYRRFVQGFSLVAAPLTRLTR 836

Query: 1288 KNEKFQWTDQCENNFQELKQRLVTSPILTIPDGTEGFVIYTDASKLGLGCVLMQNGKVIA 1467
            K  KF W D CEN FQELK RL ++P+LT+P   +GF++Y+DASKLGLGCVLMQ+ KV+A
Sbjct: 837  KGVKFVWDDVCENRFQELKNRLTSAPVLTLPVNGKGFIVYSDASKLGLGCVLMQDEKVVA 896

Query: 1468 YASRQLKTHEQNYPTHDLELAAVVHALKIWRHHLYGGKCEIFTDHKSLKYFFTQKELNMR 1647
            YASRQLK HE NYPTHDLELAAVV ALKIWRH+LYG  C IFTDHKSLKY  TQKELN+R
Sbjct: 897  YASRQLKRHEANYPTHDLELAAVVFALKIWRHYLYGEHCRIFTDHKSLKYLLTQKELNLR 956

Query: 1648 QRRWLELVKDYDCTIQYHPGKANVVADALSRKNSGQIATLLTQQESILRDFSNLRLEILR 1827
            QRRWLEL+KDYD  I YH GKANVVADALSRK+S  +A L +     L +  +L +++  
Sbjct: 957  QRRWLELIKDYDLVIDYHLGKANVVADALSRKSSSSLAALQSCYFPALIEMKSLGVQLRN 1016

Query: 1828 PPNQSDAVISSLIVQPTLRQRIKDAQKTDIFLNKMKQRVLAGSIQGFAIAPDETLVYDGR 2007
               +  +++++ IV+P+L  +IKD Q++D  L K  Q++  G +  F    D  L++  R
Sbjct: 1017 --GEDGSLLANFIVRPSLLNQIKDIQRSDDELRKEIQKLTDGGVSEFRFGEDNVLMFKDR 1074

Query: 2008 LCVPKDEDLRKEILDEAHNTPYTAHPGGTKMYRDLREIFWWRNMKRTIGKFVERCLICQQ 2187
            +CVP+   LR+ I++EAH++ Y  HPG TKMYR +RE +WW  MKR + +F+ +CL+CQQ
Sbjct: 1075 VCVPEGNQLRQAIMEEAHSSAYALHPGSTKMYRTIRENYWWPGMKRDVAEFIAKCLVCQQ 1134

Query: 2188 VKAEHQRPSGLLNPLDIPEWKWEHITMDFVTGLPRSVRKNDAIWVIVDRLTKSAHFIPVR 2367
            VKAEHQR    L  L +PEWKWEH+TMDF+ GLPR+ R  DAIWVIVDRLTKSAHF+ V 
Sbjct: 1135 VKAEHQRLVDTLQSLPVPEWKWEHVTMDFILGLPRTQRGKDAIWVIVDRLTKSAHFLAVH 1194

Query: 2368 MTFTMDRFAQLYIEKIVSLHGVPVSIVSDRDPRFTSKFWESLHAAMKTKLKFSTAYHPQT 2547
             T+++++ AQLYI++IV LHGV VSIVSDRDPRFTS+FW     A+ TKLKFSTA+HPQT
Sbjct: 1195 STYSIEKLAQLYIDEIVRLHGVSVSIVSDRDPRFTSRFWPKFQEALGTKLKFSTAFHPQT 1254

Query: 2548 DGQSERTIQTLEDMLRTVVLDLDGSWETYLPLVEFAYNNSYQATIKMAPYEALYGRKCRS 2727
            DGQSERTIQTLED+                          +Q++I MAPYEALYGRKCR+
Sbjct: 1255 DGQSERTIQTLEDI--------------------------FQSSIGMAPYEALYGRKCRT 1288

Query: 2728 PANWDEVGERRIFGPEIIERTVGVIAKIRDR 2820
            P  WDEVGER++   E+IE T   I  IR+R
Sbjct: 1289 PLCWDEVGERKLVSVELIELTNDKIKVIRER 1319



 Score =  311 bits (798), Expect(2) = 0.0
 Identities = 153/304 (50%), Positives = 210/304 (69%)
 Frame = +3

Query: 18   MTGMLPVFHIPALVLFDTGASHSFMSENFRRKLGLNCCDNNEALEVSIPSGETIKTKKTA 197
            +TG + +F   A VL D+G+  S++S  F   +  N     E + +  P GE +      
Sbjct: 379  VTGTMSLFDKDAYVLIDSGSDRSYVSTTFVSIVDRNLSPLEEEIVIHTPLGEKLVRNSCY 438

Query: 198  REVELTISGQQMKADLYVLEMRDFDVILGIDWLSKNRATIKCYDREIEFEGSNGNRFVFH 377
            R+  + +  ++ + DL  LE+ DFD+ILG+DWL+ +RA + C+ +EI    S G   VF 
Sbjct: 439  RDCGVRVGEEEFRGDLIPLEILDFDLILGMDWLTAHRANVDCFRKEIVLRNSEGAEIVFV 498

Query: 378  GAKTNTRVKIVSAIKAIRMLRKRDCQGFLVNIKGKETNERKATDEAVVKEFLDVFPDDLP 557
            G +      ++SAIKA ++++K     +L  +      E K  D ++V EF DVFPDDLP
Sbjct: 499  GKRRVLPSCVISAIKASKLVQK-GYSTYLAYVIDTSKGEPKLEDVSIVSEFPDVFPDDLP 557

Query: 558  GIPPDRQVEFTIDLVPGAAPMSKAPYRMAPKELQELKIQIQDLLDKKFIRPSVSPWGAPV 737
            G+PPDR++EF IDL+PG AP+S  PYRMAP EL+ELK+Q+Q+L+DK FIRPS+SPWGAP+
Sbjct: 558  GLPPDRELEFPIDLLPGTAPISIPPYRMAPTELKELKVQLQELVDKGFIRPSISPWGAPI 617

Query: 738  LFVKKKDGSFRMCIDYRDLNRLTIKNKYPLPRIEDLFDQLKGASVFSKIDLRSGYHQLKI 917
            LFVKKKDG+ R+CID R LNR+TIKNKYPLPRI+DLFDQL+GA+VFSK+DLRSGYHQL+I
Sbjct: 618  LFVKKKDGTLRLCIDCRQLNRMTIKNKYPLPRIDDLFDQLQGATVFSKVDLRSGYHQLRI 677

Query: 918  NDCD 929
             + D
Sbjct: 678  KEQD 681



 Score =  118 bits (295), Expect = 4e-23
 Identities = 52/95 (54%), Positives = 72/95 (75%)
 Frame = +3

Query: 2877 KKGKLRPRYIGPFEILDRIGDVAYRLALPPELAAVHNVFHISMLRKYIADPSHIINHEEL 3056
            K+GKL PRYIGPF I++RIG VAYRL LPPEL  +HNVFH+SML+KY+ DPSH++    +
Sbjct: 1361 KRGKLNPRYIGPFRIIERIGPVAYRLELPPELDRIHNVFHVSMLKKYVPDPSHVLEAPPI 1420

Query: 3057 DVSNNLAYEESPVAILGKKVHKLRNREVPLVLVQW 3161
            ++ ++L +E  PV+IL +K   LRN+ + +V V W
Sbjct: 1421 ELHDDLKFEVQPVSILDRKDLVLRNKSISMVKVLW 1455


>gb|ABA98193.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1759

 Score =  764 bits (1973), Expect(3) = 0.0
 Identities = 364/626 (58%), Positives = 463/626 (73%)
 Frame = +1

Query: 940  YLDKFVIVFIDDILIYSQDKEQHEEHLRIVLETLRQEKLYAKFSKCEFWLDRVVFLGHIV 1119
            YLDKFV+VFIDDILIYSQ +E H+ HLR+VL  LR+ +LYAK SKCEFWL  V FLGH++
Sbjct: 998  YLDKFVVVFIDDILIYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCEFWLSEVKFLGHVI 1057

Query: 1120 TANGIEVDPSKVEAILNWKAPTNVGEVRSFLGLAGYYRRFIQDFSKIAKPLTHLTKKNEK 1299
            +A G+ VDP  V A+ +WK P  V +VRSFLGLAGYYRRFI++FSKIA+P+T L KK EK
Sbjct: 1058 SAKGVAVDPETVTAVTDWKQPKTVTQVRSFLGLAGYYRRFIENFSKIARPMTQLLKKEEK 1117

Query: 1300 FQWTDQCENNFQELKQRLVTSPILTIPDGTEGFVIYTDASKLGLGCVLMQNGKVIAYASR 1479
            F W+ QCE  FQ LK++LV+SP+L +PD  + F++Y DAS+ GLGCVLMQ+G V+AYASR
Sbjct: 1118 FVWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVYCDASRQGLGCVLMQDGHVVAYASR 1177

Query: 1480 QLKTHEQNYPTHDLELAAVVHALKIWRHHLYGGKCEIFTDHKSLKYFFTQKELNMRQRRW 1659
            QL+ HE NYPTHDLELAAVVHALKIWRH+L G +CEI+TDHKSLKY FTQ +LN+RQRRW
Sbjct: 1178 QLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEIYTDHKSLKYIFTQSDLNLRQRRW 1237

Query: 1660 LELVKDYDCTIQYHPGKANVVADALSRKNSGQIATLLTQQESILRDFSNLRLEILRPPNQ 1839
            LEL+KDYD  I YHPGKANVVADALSRK+      + +    + +    L L I+     
Sbjct: 1238 LELIKDYDVGIHYHPGKANVVADALSRKSHCNTLNVRSIPPELNQQMEALNLSIV----- 1292

Query: 1840 SDAVISSLIVQPTLRQRIKDAQKTDIFLNKMKQRVLAGSIQGFAIAPDETLVYDGRLCVP 2019
                +++L  +PTL  +I++AQ+ D  ++ + + +  G   GF      TL    R+CVP
Sbjct: 1293 GRGFLAALEAKPTLLDQIREAQRNDPDMHGLLKNMKQGKAAGFTEDEHGTLWNGKRVCVP 1352

Query: 2020 KDEDLRKEILDEAHNTPYTAHPGGTKMYRDLREIFWWRNMKRTIGKFVERCLICQQVKAE 2199
             + +L++ IL EAH +PY+ HPG TKMY DL+E +WW +MKR I +FV  C +CQ+VKAE
Sbjct: 1353 DNRELKQLILQEAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAE 1412

Query: 2200 HQRPSGLLNPLDIPEWKWEHITMDFVTGLPRSVRKNDAIWVIVDRLTKSAHFIPVRMTFT 2379
            HQRP+GLL PL +PEWKW+ I MDF+TGLP++    D+IWVIVDRLTK A FIPV+ T+ 
Sbjct: 1413 HQRPAGLLQPLQVPEWKWDEIGMDFITGLPKTQGGYDSIWVIVDRLTKVARFIPVKTTYG 1472

Query: 2380 MDRFAQLYIEKIVSLHGVPVSIVSDRDPRFTSKFWESLHAAMKTKLKFSTAYHPQTDGQS 2559
             ++ A+LY  +IVSLHG+P  IVSDR  +FTS FW+ L   + T+L FSTAYHPQTDGQ+
Sbjct: 1473 GNKLAELYFARIVSLHGIPKKIVSDRGSQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQT 1532

Query: 2560 ERTIQTLEDMLRTVVLDLDGSWETYLPLVEFAYNNSYQATIKMAPYEALYGRKCRSPANW 2739
            ER  Q LEDMLR  VLD   +W+  LP  EF+YNNSYQA+I+MAPYEA YGRKCR+P  W
Sbjct: 1533 ERLNQILEDMLRACVLDFGKTWDKSLPYAEFSYNNSYQASIQMAPYEASYGRKCRTPLLW 1592

Query: 2740 DEVGERRIFGPEIIERTVGVIAKIRD 2817
            D+VGE ++FG +I+      +  IRD
Sbjct: 1593 DQVGESQVFGTDILREAEAKVRIIRD 1618



 Score =  256 bits (653), Expect(3) = 0.0
 Identities = 138/308 (44%), Positives = 191/308 (62%), Gaps = 2/308 (0%)
 Frame = +3

Query: 12   ETMTGMLPVFHIPALVLFDTGASHSFMSENF--RRKLGLNCCDNNEALEVSIPSGETIKT 185
            + + G   V  IPA +LFD+GASHSF+S +F  R +LG+    N   L ++ P G  +  
Sbjct: 680  DVIVGTFLVHSIPATILFDSGASHSFISVSFVGRNQLGVERLRN--PLLITTPGG-VMTA 736

Query: 186  KKTAREVELTISGQQMKADLYVLEMRDFDVILGIDWLSKNRATIKCYDREIEFEGSNGNR 365
            K  +  V + I G    +DL +L+ ++ DVILG++WL++ +  + C  R +         
Sbjct: 737  KYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVVDCARRTVTLYRGPEQP 796

Query: 366  FVFHGAKTNTRVKIVSAIKAIRMLRKRDCQGFLVNIKGKETNERKATDEAVVKEFLDVFP 545
             VF    T+ R                            E ++   ++  +V+EF DVFP
Sbjct: 797  VVFFAPPTSVR--------------------------SSELHQIGLSEIPIVREFGDVFP 830

Query: 546  DDLPGIPPDRQVEFTIDLVPGAAPMSKAPYRMAPKELQELKIQIQDLLDKKFIRPSVSPW 725
            ++LPG+PP R++EF IDL PG  P+ K PYRMA  EL E+K Q+++L +K +IRPS SPW
Sbjct: 831  EELPGMPPKREIEFRIDLAPGTTPLHKRPYRMAANELAEVKKQLEELKEKGYIRPSTSPW 890

Query: 726  GAPVLFVKKKDGSFRMCIDYRDLNRLTIKNKYPLPRIEDLFDQLKGASVFSKIDLRSGYH 905
            GAPV+FV+KKD + RMC+DYR LN +TIKNKYPLPRI+DLFDQLKGA+VFSKIDLRSGYH
Sbjct: 891  GAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYH 950

Query: 906  QLKINDCD 929
            QL+I + D
Sbjct: 951  QLRIREED 958



 Score = 98.2 bits (243), Expect(3) = 0.0
 Identities = 47/97 (48%), Positives = 62/97 (63%)
 Frame = +3

Query: 2880 KGKLRPRYIGPFEILDRIGDVAYRLALPPELAAVHNVFHISMLRKYIADPSHIINHEELD 3059
            KGKL PRY+GPF I+ R G+VAY+L LP  L  VH+VFH+S L+K +  PS   + E+++
Sbjct: 1630 KGKLAPRYVGPFRIIARRGEVAYQLELPASLGNVHDVFHVSQLKKCLRVPSEQADSEQIE 1689

Query: 3060 VSNNLAYEESPVAILGKKVHKLRNREVPLVLVQWSRH 3170
            V  +L Y E PV IL     + RNR +    VQWS H
Sbjct: 1690 VREDLTYVERPVKILDTMERRTRNRVIRFCKVQWSNH 1726


>dbj|BAL46523.1| hypothetical protein [Gentiana scabra x Gentiana triflora]
          Length = 1152

 Score =  789 bits (2037), Expect(2) = 0.0
 Identities = 373/626 (59%), Positives = 475/626 (75%)
 Frame = +1

Query: 937  PYLDKFVIVFIDDILIYSQDKEQHEEHLRIVLETLRQEKLYAKFSKCEFWLDRVVFLGHI 1116
            PYLDKFV+VFIDDILIYS+D+++HEEHLRIVL+TL+++KLYAKFSKCEFWL +V FLGH+
Sbjct: 356  PYLDKFVVVFIDDILIYSKDEKEHEEHLRIVLQTLKEKKLYAKFSKCEFWLKQVSFLGHV 415

Query: 1117 VTANGIEVDPSKVEAILNWKAPTNVGEVRSFLGLAGYYRRFIQDFSKIAKPLTHLTKKNE 1296
            ++ +GI+VDP+K+EA+  W  PT V E+RSFLGLAGYYR+F+QDFSKIA PLT LT+KN 
Sbjct: 416  ISGDGIQVDPAKIEAVSKWPRPTTVTEIRSFLGLAGYYRKFVQDFSKIATPLTRLTQKNI 475

Query: 1297 KFQWTDQCENNFQELKQRLVTSPILTIPDGTEGFVIYTDASKLGLGCVLMQNGKVIAYAS 1476
            KF+W+ +CE  FQ LK +L  +P+L +P+  + + +YTDAS  GLGCVLMQ GKVIAYAS
Sbjct: 476  KFEWSKECEEAFQTLKDKLTVAPVLALPEVFDNYDVYTDASGQGLGCVLMQAGKVIAYAS 535

Query: 1477 RQLKTHEQNYPTHDLELAAVVHALKIWRHHLYGGKCEIFTDHKSLKYFFTQKELNMRQRR 1656
            RQLK HE+NYPTHDLELAAVV ALK WRH+LYG K  IFTDHKSLK+FFTQ+ LNMRQRR
Sbjct: 536  RQLKVHEKNYPTHDLELAAVVFALKQWRHYLYGVKARIFTDHKSLKFFFTQENLNMRQRR 595

Query: 1657 WLELVKDYDCTIQYHPGKANVVADALSRKNSGQIATLLTQQESILRDFSNLRLEILRPPN 1836
            WLE VKDYD  IQYHPGKANVVADALSR+    I TL    + ++    +L+++++    
Sbjct: 596  WLEFVKDYDLDIQYHPGKANVVADALSRRPVNAITTL----QEVIHQLDSLQIQVVEREG 651

Query: 1837 QSDAVISSLIVQPTLRQRIKDAQKTDIFLNKMKQRVLAGSIQGFAIAPDETLVYDGRLCV 2016
            ++    + L+ +  L   I+  Q  D  L  +K+        G+ +  +  L Y  RLCV
Sbjct: 652  EAQC-FAPLMARSELLDDIRAKQDEDPVLVDLKRVAREKPTVGYQLDKNGHLWYGDRLCV 710

Query: 2017 PKDEDLRKEILDEAHNTPYTAHPGGTKMYRDLREIFWWRNMKRTIGKFVERCLICQQVKA 2196
            P  + LR++++DEAH   +  HPG TKMYRDL+E +WW  MK  I +FV +C  CQ+VKA
Sbjct: 711  PDVDGLRQQVMDEAHKIAFAVHPGSTKMYRDLKERYWWLGMKLNIAEFVAKCDTCQRVKA 770

Query: 2197 EHQRPSGLLNPLDIPEWKWEHITMDFVTGLPRSVRKNDAIWVIVDRLTKSAHFIPVRMTF 2376
            EH+RP GLL PL++PEWKWE+ITMDF+TGLPR+   +D IWVIVDRLTKSAHF+P ++  
Sbjct: 771  EHRRPGGLLKPLEVPEWKWENITMDFITGLPRTKSGHDMIWVIVDRLTKSAHFLPCKVDM 830

Query: 2377 TMDRFAQLYIEKIVSLHGVPVSIVSDRDPRFTSKFWESLHAAMKTKLKFSTAYHPQTDGQ 2556
             + +F QLY++ IV LHGVP+SIVSDRD RF S FW+ L  A +TK   STA+HPQTDGQ
Sbjct: 831  PIKKFTQLYLDNIVRLHGVPLSIVSDRDSRFISHFWKGLQKAFETKTDLSTAFHPQTDGQ 890

Query: 2557 SERTIQTLEDMLRTVVLDLDGSWETYLPLVEFAYNNSYQATIKMAPYEALYGRKCRSPAN 2736
            SERTIQTLEDMLR  VL++ GSW+ +L + EFAYNNSY A++ M P+EALYGRKCR+P  
Sbjct: 891  SERTIQTLEDMLRACVLEVGGSWDDFLSVAEFAYNNSYHASLGMPPFEALYGRKCRTPLY 950

Query: 2737 WDEVGERRIFGPEIIERTVGVIAKIR 2814
            WDEVGE++  GPE++E+    +  IR
Sbjct: 951  WDEVGEKQYTGPELVEQAKEKVELIR 976



 Score =  304 bits (778), Expect(2) = 0.0
 Identities = 152/307 (49%), Positives = 210/307 (68%), Gaps = 3/307 (0%)
 Frame = +3

Query: 18  MTGMLPVFHIPALVLFDTGASHSFMSENFRRKLGLNCCDNNEALEVSIPSGETIKTKKTA 197
           + G + + ++    LFDTGAS +F+S    RKL L   +  + L ++ P G   K  +  
Sbjct: 12  LLGTIIIDNLAVSALFDTGASGTFVSSKIARKLNLPLQELEKPLSITTPLGRVTKVAQVL 71

Query: 198 REVELTISGQQMKADLYVLEMRDFDVILGIDWLSKNRATIKCYDREIEFEGSNGNRFVFH 377
            +V++ +   + K+DL VL+  +FDVILG+DWLSKN   + C  +++ F     +   F 
Sbjct: 72  PQVDVRVGAYRCKSDLTVLDFTNFDVILGMDWLSKNFVHVDCRGKKVIFRVPGKSDKTFQ 131

Query: 378 G---AKTNTRVKIVSAIKAIRMLRKRDCQGFLVNIKGKETNERKATDEAVVKEFLDVFPD 548
           G     +  +  I+SA++A++ L+K  C+G+++     E +  K  + ++VK+F +VFPD
Sbjct: 132 GNVYKASKKKYPIISAVRAMKALQK-GCEGYVLYAMDTEKHTPKLEETSIVKDFPEVFPD 190

Query: 549 DLPGIPPDRQVEFTIDLVPGAAPMSKAPYRMAPKELQELKIQIQDLLDKKFIRPSVSPWG 728
           +LPG  PDR +EF I L+PGAAP +KAPYRMAP EL+ELKIQ++D+L++  I+PS SPWG
Sbjct: 191 ELPGNMPDRDIEFEIQLIPGAAPTAKAPYRMAPAELKELKIQLKDMLERNVIQPSTSPWG 250

Query: 729 APVLFVKKKDGSFRMCIDYRDLNRLTIKNKYPLPRIEDLFDQLKGASVFSKIDLRSGYHQ 908
           APVLFVKKKDGS RMCIDYR LN LTIKNKYPLPRI+DLF+QL+G  VFSKIDLRSGYHQ
Sbjct: 251 APVLFVKKKDGSLRMCIDYRALNNLTIKNKYPLPRIDDLFNQLQGKKVFSKIDLRSGYHQ 310

Query: 909 LKINDCD 929
           LKI   D
Sbjct: 311 LKIKVAD 317



 Score =  105 bits (263), Expect = 2e-19
 Identities = 55/122 (45%), Positives = 75/122 (61%), Gaps = 2/122 (1%)
 Frame = +3

Query: 2877 KKGKLRPRYIGPFEILDRIGDVAYRLALPPELAAVHNVFHISMLRKYIA--DPSHIINHE 3050
            +KGKL PRY+GPF+I++RIG +AYRL LP  ++ VHNVFH+SML+K ++  D     N E
Sbjct: 1020 QKGKLSPRYVGPFDIIERIGKLAYRLRLPESMSRVHNVFHVSMLKKCLSSTDVESQFNPE 1079

Query: 3051 ELDVSNNLAYEESPVAILGKKVHKLRNREVPLVLVQWSRHGXXXXXXXXXXXXXXKYPNI 3230
             L   +NL+Y E PV IL +K   ++ R +PLVLVQWS H               ++P  
Sbjct: 1080 ML--QDNLSYIEKPVKILDRKEKIVKRRIIPLVLVQWSNHSPSEATWEEEEVIADEFPEF 1137

Query: 3231 HN 3236
             N
Sbjct: 1138 EN 1139


>ref|XP_007213082.1| hypothetical protein PRUPE_ppa021229mg [Prunus persica]
            gi|462408947|gb|EMJ14281.1| hypothetical protein
            PRUPE_ppa021229mg [Prunus persica]
          Length = 1194

 Score =  805 bits (2080), Expect(2) = 0.0
 Identities = 385/627 (61%), Positives = 487/627 (77%)
 Frame = +1

Query: 940  YLDKFVIVFIDDILIYSQDKEQHEEHLRIVLETLRQEKLYAKFSKCEFWLDRVVFLGHIV 1119
            YLD+FVIVFIDDIL+YS+ ++ H +HL +VL TLR+ +LYAKFSKC+FWLDRV FLGH++
Sbjct: 409  YLDRFVIVFIDDILVYSKSQKAHMKHLNLVLRTLRRRQLYAKFSKCQFWLDRVSFLGHVI 468

Query: 1120 TANGIEVDPSKVEAILNWKAPTNVGEVRSFLGLAGYYRRFIQDFSKIAKPLTHLTKKNEK 1299
            +A GI VDP K+EA++NW  PT+V E+RSFLGLAGYYRRF++ FS IA PLT+LT+K  K
Sbjct: 469  SAEGIYVDPQKIEAVVNWLRPTSVTEIRSFLGLAGYYRRFVEGFSTIAAPLTYLTRKGVK 528

Query: 1300 FQWTDQCENNFQELKQRLVTSPILTIPDGTEGFVIYTDASKLGLGCVLMQNGKVIAYASR 1479
            F W+D+CE +F ELK RL T+P+L +PD +  FVIY+DAS+ GLGCVLMQ+G+VIAYASR
Sbjct: 529  FVWSDKCEESFIELKTRLTTAPVLALPDDSGNFVIYSDASQQGLGCVLMQHGRVIAYASR 588

Query: 1480 QLKTHEQNYPTHDLELAAVVHALKIWRHHLYGGKCEIFTDHKSLKYFFTQKELNMRQRRW 1659
            QLK HE NYP HDLELAAVV ALKIWRH+LYG  C+IFTDHKSLKY FTQKELN+RQRRW
Sbjct: 589  QLKKHELNYPVHDLELAAVVFALKIWRHYLYGETCQIFTDHKSLKYLFTQKELNLRQRRW 648

Query: 1660 LELVKDYDCTIQYHPGKANVVADALSRKNSGQIATLLTQQESILRDFSNLRLEILRPPNQ 1839
            LEL+KDYDCTI++HPG+ANVVADALSRK+SG IA L  +   ++ +   LR+ +    + 
Sbjct: 649  LELIKDYDCTIEHHPGRANVVADALSRKSSGSIAYLRGRYLPLMVEMRKLRIGL--DVDN 706

Query: 1840 SDAVISSLIVQPTLRQRIKDAQKTDIFLNKMKQRVLAGSIQGFAIAPDETLVYDGRLCVP 2019
              A++++L V+P L +RI  AQ  D  +  ++  V  G     ++  D  L+   RL VP
Sbjct: 707  QGALLATLHVRPVLVERILAAQSQDPLICTLRVEVANGDRTDCSVRNDGALMVGNRLYVP 766

Query: 2020 KDEDLRKEILDEAHNTPYTAHPGGTKMYRDLREIFWWRNMKRTIGKFVERCLICQQVKAE 2199
             DE L++EIL+EAH + +  HPG TKMY  LRE +WW  MK+ I ++V RCLICQQVKAE
Sbjct: 767  NDEALKREILEEAHESAFAMHPGSTKMYHTLREHYWWPFMKKQIAEYVRRCLICQQVKAE 826

Query: 2200 HQRPSGLLNPLDIPEWKWEHITMDFVTGLPRSVRKNDAIWVIVDRLTKSAHFIPVRMTFT 2379
             Q+PSGLL PL IPEWKWE ITMDFV  LP++  K+D +WVIVDRLTKSAHF+PVR  ++
Sbjct: 827  RQKPSGLLQPLPIPEWKWERITMDFVFKLPQTQSKHDGVWVIVDRLTKSAHFLPVRANYS 886

Query: 2380 MDRFAQLYIEKIVSLHGVPVSIVSDRDPRFTSKFWESLHAAMKTKLKFSTAYHPQTDGQS 2559
            +++ A+++I++IV LHGVPVSIVSDRDPRFTS+FW  L+ A  T+L+FSTA+HPQTDGQS
Sbjct: 887  LNKLAKIFIDEIVRLHGVPVSIVSDRDPRFTSRFWTKLNEAFGTQLQFSTAFHPQTDGQS 946

Query: 2560 ERTIQTLEDMLRTVVLDLDGSWETYLPLVEFAYNNSYQATIKMAPYEALYGRKCRSPANW 2739
            ERTIQTLE MLR   L   G W+  LPL+EFAYNNSYQ +I M+P++ALYGR+CR+P  W
Sbjct: 947  ERTIQTLEHMLRACALQFRGDWDEKLPLMEFAYNNSYQVSIGMSPFDALYGRQCRTPFYW 1006

Query: 2740 DEVGERRIFGPEIIERTVGVIAKIRDR 2820
            DEVGE R+   E +E T   +  IR+R
Sbjct: 1007 DEVGEHRLVVSEDVELTKKQVQIIRER 1033



 Score =  278 bits (712), Expect(2) = 0.0
 Identities = 129/233 (55%), Positives = 177/233 (75%)
 Frame = +3

Query: 231 MKADLYVLEMRDFDVILGIDWLSKNRATIKCYDREIEFEGSNGNRFVFHGAKTNTRVKIV 410
           ++ADL  L M D DVILG+DWL+++RA++ C+ +E+ F         F+G +      ++
Sbjct: 138 LEADLIPLGMVDLDVILGMDWLARHRASVDCFRKEVVFHSLGQPEVTFYGERRVLPSCLI 197

Query: 411 SAIKAIRMLRKRDCQGFLVNIKGKETNERKATDEAVVKEFLDVFPDDLPGIPPDRQVEFT 590
           SA+ A R+LRK  C G++ ++     N  +  D  V+++F DVFP+DLPG+PP R++EF 
Sbjct: 198 SAMTAKRLLRK-GCSGYIAHVIDTRDNGLRLEDIPVIQDFPDVFPEDLPGLPPHREIEFV 256

Query: 591 IDLVPGAAPMSKAPYRMAPKELQELKIQIQDLLDKKFIRPSVSPWGAPVLFVKKKDGSFR 770
           I+L PG  P+S+APYRMAP EL+ELK Q+Q+L+DK FIRPS SPWGAPVLFVKKKDG+ R
Sbjct: 257 IELAPGTNPISQAPYRMAPAELRELKTQLQELVDKGFIRPSFSPWGAPVLFVKKKDGTMR 316

Query: 771 MCIDYRDLNRLTIKNKYPLPRIEDLFDQLKGASVFSKIDLRSGYHQLKINDCD 929
           +C+DYR LN++T++N+YPLPRI+DLFDQLKGA VFSKIDLRSGYHQL++ + D
Sbjct: 317 LCVDYRQLNKITVRNRYPLPRIDDLFDQLKGAKVFSKIDLRSGYHQLRVREED 369



 Score =  121 bits (303), Expect = 4e-24
 Identities = 54/98 (55%), Positives = 73/98 (74%)
 Frame = +3

Query: 2877 KKGKLRPRYIGPFEILDRIGDVAYRLALPPELAAVHNVFHISMLRKYIADPSHIINHEEL 3056
            K+GKL PRYIGP+EI++ +G VAYRL LP +LA +H+VFH+SMLRKYI+DPSH++  + +
Sbjct: 1075 KRGKLSPRYIGPYEIIECVGPVAYRLTLPSDLARLHDVFHVSMLRKYISDPSHVLEEQPV 1134

Query: 3057 DVSNNLAYEESPVAILGKKVHKLRNREVPLVLVQWSRH 3170
            ++  +  Y E PV IL  K   LR+RE+PLV V W  H
Sbjct: 1135 ELEADFTYVEQPVQILDWKTQVLRSREIPLVKVLWRSH 1172


>dbj|BAH79971.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 1477

 Score =  799 bits (2064), Expect(2) = 0.0
 Identities = 378/627 (60%), Positives = 479/627 (76%)
 Frame = +1

Query: 940  YLDKFVIVFIDDILIYSQDKEQHEEHLRIVLETLRQEKLYAKFSKCEFWLDRVVFLGHIV 1119
            YLDKFV+VFIDDILIYS+ KE+HEEHLR+ LE LR+ +LYAKFSKCEFWL  V FLGH++
Sbjct: 684  YLDKFVVVFIDDILIYSRTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVI 743

Query: 1120 TANGIEVDPSKVEAILNWKAPTNVGEVRSFLGLAGYYRRFIQDFSKIAKPLTHLTKKNEK 1299
            +A G+ VDPS VE++ NWK P  V E+RSFLGLAGYYRRFI++FSKIAKP+T L +K+ K
Sbjct: 744  SAGGVAVDPSNVESVTNWKQPKTVSEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQKDVK 803

Query: 1300 FQWTDQCENNFQELKQRLVTSPILTIPDGTEGFVIYTDASKLGLGCVLMQNGKVIAYASR 1479
            ++W+ +CE +FQELK RLV++PIL +PD  +GF +Y DASKLGLGCVLMQ+GKV+AYASR
Sbjct: 804  YKWSQECEQSFQELKSRLVSAPILILPDPKKGFQVYCDASKLGLGCVLMQDGKVVAYASR 863

Query: 1480 QLKTHEQNYPTHDLELAAVVHALKIWRHHLYGGKCEIFTDHKSLKYFFTQKELNMRQRRW 1659
            QL+ HE+NYPTHDLELAAVVHALKIWRH+L+G + E++TDHKSLKY FTQ +LNMRQRRW
Sbjct: 864  QLRPHEKNYPTHDLELAAVVHALKIWRHYLFGTRTEVYTDHKSLKYIFTQPDLNMRQRRW 923

Query: 1660 LELVKDYDCTIQYHPGKANVVADALSRKNSGQIATLLTQQESILRDFSNLRLEILRPPNQ 1839
            LEL+KDYD  I YHPGKANVVADALSRK    +         + ++F  L L I+     
Sbjct: 924  LELIKDYDMGIHYHPGKANVVADALSRKGYCNVTEGRQLPMELCKEFERLNLGII----- 978

Query: 1840 SDAVISSLIVQPTLRQRIKDAQKTDIFLNKMKQRVLAGSIQGFAIAPDETLVYDGRLCVP 2019
            S   +++L  +PTL  ++++AQ  D  + ++K+ +  G   GF      T+    R+CVP
Sbjct: 979  SRGFVAALEAKPTLIDQVREAQINDPDIQEIKKNMRRGKAIGFLEDEQGTVWLGERICVP 1038

Query: 2020 KDEDLRKEILDEAHNTPYTAHPGGTKMYRDLREIFWWRNMKRTIGKFVERCLICQQVKAE 2199
             ++DL+  IL EAH+T Y+ HPG TKMY+DL+E FWW +MKR I ++V  C +CQ+VKAE
Sbjct: 1039 DNKDLKDAILKEAHDTLYSIHPGSTKMYQDLKERFWWASMKRKIAEYVAVCDVCQRVKAE 1098

Query: 2200 HQRPSGLLNPLDIPEWKWEHITMDFVTGLPRSVRKNDAIWVIVDRLTKSAHFIPVRMTFT 2379
            HQ+P+GLL PL IPEWKWE I MDF+TGLPR+   +D+IWVIVDRLTK AHFIPV+ T++
Sbjct: 1099 HQKPAGLLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYS 1158

Query: 2380 MDRFAQLYIEKIVSLHGVPVSIVSDRDPRFTSKFWESLHAAMKTKLKFSTAYHPQTDGQS 2559
              R A+LY+ +IV LHGVP  IVSDR  +FTS FW+ L   M +KL FSTAYHPQTDGQ+
Sbjct: 1159 GSRLAELYMARIVCLHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQT 1218

Query: 2560 ERTIQTLEDMLRTVVLDLDGSWETYLPLVEFAYNNSYQATIKMAPYEALYGRKCRSPANW 2739
            ER  Q LEDMLR   LD  GSW+  LP  EF+YNNSYQA+++MAPYEALYGRKCR+P  W
Sbjct: 1219 ERVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLW 1278

Query: 2740 DEVGERRIFGPEIIERTVGVIAKIRDR 2820
            D+ GER++FG +I+      +  I++R
Sbjct: 1279 DQTGERQVFGTDILREAEEKVKIIQER 1305



 Score =  279 bits (713), Expect(2) = 0.0
 Identities = 148/306 (48%), Positives = 198/306 (64%)
 Frame = +3

Query: 12   ETMTGMLPVFHIPALVLFDTGASHSFMSENFRRKLGLNCCDNNEALEVSIPSGETIKTKK 191
            + + G  PV  +PA VLFD+GA+HSF+S +F    G+   D    L VS PS + +  ++
Sbjct: 366  DMILGTFPVNSVPATVLFDSGATHSFLSLSFAGNHGMEVEDLRRPLMVSTPSNQALSLQR 425

Query: 192  TAREVELTISGQQMKADLYVLEMRDFDVILGIDWLSKNRATIKCYDREIEFEGSNGNRFV 371
            +   V + I G    A+L +LE +D DVILG+DWL++++  I C ++++    ++G    
Sbjct: 426  SP-SVRIEIQGVPFLANLILLESKDLDVILGMDWLTRHKGVIDCANKKVTLTSNDG---- 480

Query: 372  FHGAKTNTRVKIVSAIKAIRMLRKRDCQGFLVNIKGKETNERKATDEAVVKEFLDVFPDD 551
                    RV  V A+ +   LR R              N+    +  +V+E+ DVFPDD
Sbjct: 481  --------RVVTVQALSS-ESLRSR-------------LNQITLEEIPIVREYPDVFPDD 518

Query: 552  LPGIPPDRQVEFTIDLVPGAAPMSKAPYRMAPKELQELKIQIQDLLDKKFIRPSVSPWGA 731
            LPG+PP R +EF IDLVPG  P+ K PYRMA  EL E+K Q+ DLL K +IRPS SPWGA
Sbjct: 519  LPGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGA 578

Query: 732  PVLFVKKKDGSFRMCIDYRDLNRLTIKNKYPLPRIEDLFDQLKGASVFSKIDLRSGYHQL 911
            PV+FV+KKD + RMC+DYR LN +TIKNKYPLPRI+DLFDQLKGA+VFSKIDLRSGYHQL
Sbjct: 579  PVIFVEKKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQL 638

Query: 912  KINDCD 929
            +I + D
Sbjct: 639  RIKEED 644



 Score = 97.8 bits (242), Expect = 7e-17
 Identities = 45/97 (46%), Positives = 63/97 (64%)
 Frame = +3

Query: 2880 KGKLRPRYIGPFEILDRIGDVAYRLALPPELAAVHNVFHISMLRKYIADPSHIINHEELD 3059
            KGKL PR++GP++I+ R G+VAY+L LP  LA VHNV H+S L+K +  P+   N E+++
Sbjct: 1348 KGKLAPRFVGPYKIVSRRGEVAYQLELPQSLAGVHNVSHVSQLKKCLRVPTEEANIEQIE 1407

Query: 3060 VSNNLAYEESPVAILGKKVHKLRNREVPLVLVQWSRH 3170
            V  +L Y E P+ IL     + RNR +    VQWS H
Sbjct: 1408 VQEDLTYVEKPIRILETSERRTRNRVIRFCKVQWSNH 1444


>emb|CAH65969.1| H0820C10.2 [Oryza sativa Indica Group]
          Length = 1685

 Score =  797 bits (2058), Expect(2) = 0.0
 Identities = 378/627 (60%), Positives = 478/627 (76%)
 Frame = +1

Query: 940  YLDKFVIVFIDDILIYSQDKEQHEEHLRIVLETLRQEKLYAKFSKCEFWLDRVVFLGHIV 1119
            YLDKFV+VFIDDILIYS+ KE+HEEHLR+ LE LR+ +LYAKFSKCEFWL  V FLGH++
Sbjct: 892  YLDKFVVVFIDDILIYSRTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVI 951

Query: 1120 TANGIEVDPSKVEAILNWKAPTNVGEVRSFLGLAGYYRRFIQDFSKIAKPLTHLTKKNEK 1299
            +A G+ VDPS VE++ NWK P  V E+RSFLGLAGYYRRFI++FSKIAKP+T L +K+ K
Sbjct: 952  SAGGVAVDPSNVESVTNWKQPKTVSEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQKDVK 1011

Query: 1300 FQWTDQCENNFQELKQRLVTSPILTIPDGTEGFVIYTDASKLGLGCVLMQNGKVIAYASR 1479
            ++W+++CE +FQELK RLV++PIL +PD  +GF +Y DASKLGLGCVLMQ+GKV+AYASR
Sbjct: 1012 YKWSEECEQSFQELKNRLVSAPILILPDPKKGFQVYCDASKLGLGCVLMQDGKVVAYASR 1071

Query: 1480 QLKTHEQNYPTHDLELAAVVHALKIWRHHLYGGKCEIFTDHKSLKYFFTQKELNMRQRRW 1659
            QL+ HE+NYPTHDLELAAVVHALKIWRH+L+G + E++TDHKSLKY FTQ +LNMRQRRW
Sbjct: 1072 QLRPHEKNYPTHDLELAAVVHALKIWRHYLFGTRTEVYTDHKSLKYIFTQPDLNMRQRRW 1131

Query: 1660 LELVKDYDCTIQYHPGKANVVADALSRKNSGQIATLLTQQESILRDFSNLRLEILRPPNQ 1839
            LEL+KDYD  I YHPGKANV ADALSRK              + +DF  L L I+     
Sbjct: 1132 LELIKDYDMGIHYHPGKANVEADALSRKGYCNATEGRQLPLELCKDFERLNLGIV----- 1186

Query: 1840 SDAVISSLIVQPTLRQRIKDAQKTDIFLNKMKQRVLAGSIQGFAIAPDETLVYDGRLCVP 2019
            S   +++L  +PTL  ++++AQ  D  + ++K+ +  G   GF      T+    R+CVP
Sbjct: 1187 SRGFVAALEAKPTLIDQVREAQINDPDIQEIKKNMRRGKAIGFLEDEQGTVWLGERICVP 1246

Query: 2020 KDEDLRKEILDEAHNTPYTAHPGGTKMYRDLREIFWWRNMKRTIGKFVERCLICQQVKAE 2199
             ++DL+  IL EAH+T Y+ HPG TKMY+DL+E FWW +MKR I ++V  C +CQ+VKAE
Sbjct: 1247 DNKDLKDAILKEAHDTLYSIHPGSTKMYQDLKERFWWASMKREIAEYVAVCDVCQRVKAE 1306

Query: 2200 HQRPSGLLNPLDIPEWKWEHITMDFVTGLPRSVRKNDAIWVIVDRLTKSAHFIPVRMTFT 2379
            HQ+P+GLL PL IPEWKWE I MDF+TGLPR+   +D+IWVIVDRLTK AHFIPV+ T++
Sbjct: 1307 HQKPAGLLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYS 1366

Query: 2380 MDRFAQLYIEKIVSLHGVPVSIVSDRDPRFTSKFWESLHAAMKTKLKFSTAYHPQTDGQS 2559
              R A+LY+ +IV LHGVP  IVSDR  +FTS FW+ L   M +KL FSTAYHPQTDGQ+
Sbjct: 1367 GSRLAELYMARIVCLHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQT 1426

Query: 2560 ERTIQTLEDMLRTVVLDLDGSWETYLPLVEFAYNNSYQATIKMAPYEALYGRKCRSPANW 2739
            ER  Q LEDMLR   LD  GSW+  LP  EF+YNNSYQA+++MAPYEALYGRKCR+P  W
Sbjct: 1427 ERVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLW 1486

Query: 2740 DEVGERRIFGPEIIERTVGVIAKIRDR 2820
            D+ GER++FG +I+      +  I++R
Sbjct: 1487 DQTGERQVFGTDILREAEEKVKIIQER 1513



 Score =  280 bits (717), Expect(2) = 0.0
 Identities = 146/306 (47%), Positives = 196/306 (64%)
 Frame = +3

Query: 12   ETMTGMLPVFHIPALVLFDTGASHSFMSENFRRKLGLNCCDNNEALEVSIPSGETIKTKK 191
            + + G  PV  +PA VLFD+GA+HSF+S +F    G+   D    L VS PS + +  ++
Sbjct: 574  DVILGTFPVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQR 633

Query: 192  TAREVELTISGQQMKADLYVLEMRDFDVILGIDWLSKNRATIKCYDREIEFEGSNGNRFV 371
            +   V++ I G    A+L +L+ +D DVILG+DWL+++++ I C +R++     +G    
Sbjct: 634  SP-SVKIEIQGVPFLANLILLKSKDLDVILGMDWLARHKSVIDCANRKVTLTSHDGRVVT 692

Query: 372  FHGAKTNTRVKIVSAIKAIRMLRKRDCQGFLVNIKGKETNERKATDEAVVKEFLDVFPDD 551
             H   T +             LR R              N+    +  +V+E+ DVFPDD
Sbjct: 693  VHAMSTES-------------LRSR-------------LNQITLEEIPIVREYPDVFPDD 726

Query: 552  LPGIPPDRQVEFTIDLVPGAAPMSKAPYRMAPKELQELKIQIQDLLDKKFIRPSVSPWGA 731
            LPG+PP R +EF IDLVPG  P+ K PYRMA  EL E+K Q+ DLL K +IRPS SPWGA
Sbjct: 727  LPGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGA 786

Query: 732  PVLFVKKKDGSFRMCIDYRDLNRLTIKNKYPLPRIEDLFDQLKGASVFSKIDLRSGYHQL 911
            PV+FV+KKD + RMC+DYR LN +TIKNKYPLPRI+DLFDQLKGA+VFSKIDLRSGYHQL
Sbjct: 787  PVIFVEKKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQL 846

Query: 912  KINDCD 929
            +I + D
Sbjct: 847  RIKEED 852



 Score = 99.0 bits (245), Expect = 3e-17
 Identities = 45/97 (46%), Positives = 64/97 (65%)
 Frame = +3

Query: 2880 KGKLRPRYIGPFEILDRIGDVAYRLALPPELAAVHNVFHISMLRKYIADPSHIINHEELD 3059
            KGKL PR++GP++I+ R G+VAY+L LP  LA VH+VFH+S L+K +  P+   N E+++
Sbjct: 1556 KGKLAPRFVGPYKIVSRRGEVAYQLELPQSLAGVHDVFHVSQLKKCLRVPTEEANIEQIE 1615

Query: 3060 VSNNLAYEESPVAILGKKVHKLRNREVPLVLVQWSRH 3170
            V  +L Y E P+ IL     + RNR +    VQWS H
Sbjct: 1616 VQEDLTYVEKPIRILETSERRTRNRVIRFCKVQWSNH 1652


>dbj|BAH80069.1| putative retrotransposon protein [Oryza sativa Indica Group]
          Length = 1475

 Score =  797 bits (2058), Expect(2) = 0.0
 Identities = 378/627 (60%), Positives = 479/627 (76%)
 Frame = +1

Query: 940  YLDKFVIVFIDDILIYSQDKEQHEEHLRIVLETLRQEKLYAKFSKCEFWLDRVVFLGHIV 1119
            YLDKFV+VFIDDILIYS+ KE+HEEHLR+ LE LR+ +LYAKFSKCEFWL  V FLGH++
Sbjct: 682  YLDKFVVVFIDDILIYSRTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVI 741

Query: 1120 TANGIEVDPSKVEAILNWKAPTNVGEVRSFLGLAGYYRRFIQDFSKIAKPLTHLTKKNEK 1299
            +A G+ VDPS VE++ NWK P  V E+RSFLGLAGYYRRFI++FSKIAKP+T L +K+ K
Sbjct: 742  SAGGVAVDPSNVESVTNWKQPKTVSEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQKDVK 801

Query: 1300 FQWTDQCENNFQELKQRLVTSPILTIPDGTEGFVIYTDASKLGLGCVLMQNGKVIAYASR 1479
            ++W+++CE +FQELK RLV++PIL +PD  +GF +Y DASKLGLGCVLMQ+GKV+AYASR
Sbjct: 802  YKWSEECEQSFQELKNRLVSAPILILPDPKKGFQVYCDASKLGLGCVLMQDGKVVAYASR 861

Query: 1480 QLKTHEQNYPTHDLELAAVVHALKIWRHHLYGGKCEIFTDHKSLKYFFTQKELNMRQRRW 1659
            QL+ HE+NYPTHDLELAAVVHALKIWRH+L+G + E++TDHKSLKY FTQ +LNMRQRRW
Sbjct: 862  QLRPHEKNYPTHDLELAAVVHALKIWRHYLFGTRTEVYTDHKSLKYIFTQPDLNMRQRRW 921

Query: 1660 LELVKDYDCTIQYHPGKANVVADALSRKNSGQIATLLTQQESILRDFSNLRLEILRPPNQ 1839
            LEL+KDYD  I YHPGKANVVADALSRK              + ++F  L L I+     
Sbjct: 922  LELIKDYDMGIHYHPGKANVVADALSRKGYCNATEGRQLPLELCKEFERLNLGIV----- 976

Query: 1840 SDAVISSLIVQPTLRQRIKDAQKTDIFLNKMKQRVLAGSIQGFAIAPDETLVYDGRLCVP 2019
            S   +++L  +PTL  ++++AQ  D  + ++K+ +  G   GF      T+    R+CVP
Sbjct: 977  SRGFVAALEAKPTLIDQVREAQINDPDIQEIKKNMRRGKAIGFLEDEQGTVWLGERICVP 1036

Query: 2020 KDEDLRKEILDEAHNTPYTAHPGGTKMYRDLREIFWWRNMKRTIGKFVERCLICQQVKAE 2199
             ++DL+  IL EAH+T Y+ HPG TKMY+DL+E FWW +MKR I ++V  C +CQ+VKAE
Sbjct: 1037 DNKDLKDAILKEAHDTLYSIHPGSTKMYQDLKERFWWASMKREIAEYVAVCDVCQRVKAE 1096

Query: 2200 HQRPSGLLNPLDIPEWKWEHITMDFVTGLPRSVRKNDAIWVIVDRLTKSAHFIPVRMTFT 2379
            HQ+P+GLL PL IPEWKWE I MDF+TGLPR+   +D+IWVIVDRLTK AHFIPV+ T++
Sbjct: 1097 HQKPAGLLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYS 1156

Query: 2380 MDRFAQLYIEKIVSLHGVPVSIVSDRDPRFTSKFWESLHAAMKTKLKFSTAYHPQTDGQS 2559
              R A+LY+ +IV LHGVP  IVSDR  +FTS FW+ L   M +KL FSTAYHPQTDGQ+
Sbjct: 1157 GSRLAELYMARIVCLHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQT 1216

Query: 2560 ERTIQTLEDMLRTVVLDLDGSWETYLPLVEFAYNNSYQATIKMAPYEALYGRKCRSPANW 2739
            ER  Q LEDMLR   LD  GSW+  LP  EF+YNNSYQA+++MAPYEALYGRKCR+P  W
Sbjct: 1217 ERVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLW 1276

Query: 2740 DEVGERRIFGPEIIERTVGVIAKIRDR 2820
            D+ GER++FG +I+      +  I++R
Sbjct: 1277 DQTGERQVFGTDILRGAEEKVKIIQER 1303



 Score =  280 bits (717), Expect(2) = 0.0
 Identities = 146/306 (47%), Positives = 195/306 (63%)
 Frame = +3

Query: 12   ETMTGMLPVFHIPALVLFDTGASHSFMSENFRRKLGLNCCDNNEALEVSIPSGETIKTKK 191
            + + G  PV  +PA VLFD+GA+HSF+S +F    G+   D    L VS PS + +  ++
Sbjct: 364  DVILGTFPVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQR 423

Query: 192  TAREVELTISGQQMKADLYVLEMRDFDVILGIDWLSKNRATIKCYDREIEFEGSNGNRFV 371
            +   V + I G    A+L +L+ +D DVILG+DWL++++  I C +R++    ++G    
Sbjct: 424  SP-SVRIEIQGVPFLANLILLKSKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGQVVT 482

Query: 372  FHGAKTNTRVKIVSAIKAIRMLRKRDCQGFLVNIKGKETNERKATDEAVVKEFLDVFPDD 551
             H   T +             LR R              N+    +  +V+E+ DVFPDD
Sbjct: 483  VHALSTES-------------LRSR-------------LNQITLEEIPIVREYPDVFPDD 516

Query: 552  LPGIPPDRQVEFTIDLVPGAAPMSKAPYRMAPKELQELKIQIQDLLDKKFIRPSVSPWGA 731
            LPG+PP R +EF IDLVPG  P+ K PYRMA  EL E+K Q+ DLL K +IRPS SPWGA
Sbjct: 517  LPGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGA 576

Query: 732  PVLFVKKKDGSFRMCIDYRDLNRLTIKNKYPLPRIEDLFDQLKGASVFSKIDLRSGYHQL 911
            PV+FV+KKD + RMC+DYR LN +TIKNKYPLPRI+DLFDQLKGA+VFSKIDLRSGYHQL
Sbjct: 577  PVIFVEKKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQL 636

Query: 912  KINDCD 929
            +I + D
Sbjct: 637  RIKEED 642



 Score = 99.0 bits (245), Expect = 3e-17
 Identities = 45/97 (46%), Positives = 64/97 (65%)
 Frame = +3

Query: 2880 KGKLRPRYIGPFEILDRIGDVAYRLALPPELAAVHNVFHISMLRKYIADPSHIINHEELD 3059
            KGKL PR++GP++I+ R G+VAY+L LP  LA VH+VFH+S L+K +  P+   N E+++
Sbjct: 1346 KGKLAPRFVGPYKIVSRRGEVAYQLELPQSLAGVHDVFHVSQLKKCLRVPTEEANIEQIE 1405

Query: 3060 VSNNLAYEESPVAILGKKVHKLRNREVPLVLVQWSRH 3170
            V  +L Y E P+ IL     + RNR +    VQWS H
Sbjct: 1406 VQEDLTYVEKPIRILETSERRTRNRVIRFCKVQWSNH 1442


>gb|AAM01169.1|AC113336_21 Putative retroelement [Oryza sativa Japonica Group]
          Length = 1449

 Score =  797 bits (2059), Expect(2) = 0.0
 Identities = 371/627 (59%), Positives = 483/627 (77%)
 Frame = +1

Query: 940  YLDKFVIVFIDDILIYSQDKEQHEEHLRIVLETLRQEKLYAKFSKCEFWLDRVVFLGHIV 1119
            YLDKFV+VFIDDILIYS+ KE+H+EHLR+ LE LR+ +LYAKFSKCEFWL  V FLGH++
Sbjct: 656  YLDKFVVVFIDDILIYSKTKEEHKEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVI 715

Query: 1120 TANGIEVDPSKVEAILNWKAPTNVGEVRSFLGLAGYYRRFIQDFSKIAKPLTHLTKKNEK 1299
            ++ G+ VDPS VE++L+WK P  V EVRSFLGLAGYYRRFI++FSKIA+P+T L +K  K
Sbjct: 716  SSGGVAVDPSNVESVLSWKQPKTVSEVRSFLGLAGYYRRFIENFSKIARPMTRLLQKEVK 775

Query: 1300 FQWTDQCENNFQELKQRLVTSPILTIPDGTEGFVIYTDASKLGLGCVLMQNGKVIAYASR 1479
            ++WT+ CE +FQELK+RLVT+P+L +PD  +GF +Y DAS+LGLGCVLMQ GKV+AYASR
Sbjct: 776  YKWTEDCEQSFQELKKRLVTAPVLILPDSRKGFQVYCDASRLGLGCVLMQEGKVVAYASR 835

Query: 1480 QLKTHEQNYPTHDLELAAVVHALKIWRHHLYGGKCEIFTDHKSLKYFFTQKELNMRQRRW 1659
            QL+ HE NYPTHDLELAAVVHALKIWRH+LYG + E++TDHKSLKY FTQ +LNMRQRRW
Sbjct: 836  QLRPHENNYPTHDLELAAVVHALKIWRHYLYGNRTEVYTDHKSLKYIFTQPDLNMRQRRW 895

Query: 1660 LELVKDYDCTIQYHPGKANVVADALSRKNSGQIATLLTQQESILRDFSNLRLEILRPPNQ 1839
            LEL+KDYD  I YHPGKANVVADALSRK+   ++        + ++F  L L I+     
Sbjct: 896  LELIKDYDMEIHYHPGKANVVADALSRKSYCNMSEGRCLPWELCQEFEKLNLGIV----- 950

Query: 1840 SDAVISSLIVQPTLRQRIKDAQKTDIFLNKMKQRVLAGSIQGFAIAPDETLVYDGRLCVP 2019
            S   +++L  +PTL  +I++AQ  D ++ ++K+ +  G   GF      T+    R+CVP
Sbjct: 951  SKGFVAALEAKPTLFDQIREAQVNDPYIQEIKKNMRRGKAIGFVEDEQGTVWLGERICVP 1010

Query: 2020 KDEDLRKEILDEAHNTPYTAHPGGTKMYRDLREIFWWRNMKRTIGKFVERCLICQQVKAE 2199
            ++++L+  I+ EAH T Y+ HPG TKMY+DL++ FWW +M+R I ++V  C +CQ+VKAE
Sbjct: 1011 ENKELKDTIMKEAHETLYSIHPGSTKMYQDLKQQFWWASMRREIAEYVALCDVCQRVKAE 1070

Query: 2200 HQRPSGLLNPLDIPEWKWEHITMDFVTGLPRSVRKNDAIWVIVDRLTKSAHFIPVRMTFT 2379
            HQ+P+GLL PL IPEWKWE I MDF+TGLPR+   +D+IWV+VDRLTK AHFIPV+ T+T
Sbjct: 1071 HQKPAGLLQPLKIPEWKWEEIGMDFITGLPRTSAGHDSIWVVVDRLTKVAHFIPVKTTYT 1130

Query: 2380 MDRFAQLYIEKIVSLHGVPVSIVSDRDPRFTSKFWESLHAAMKTKLKFSTAYHPQTDGQS 2559
              + A+LY+ ++V LHGVP  IVSDR  +FTSKFW+ L + + T+L FSTAYHPQTDGQ+
Sbjct: 1131 GHKLAELYMARVVCLHGVPKKIVSDRGSQFTSKFWQKLQSELGTRLNFSTAYHPQTDGQT 1190

Query: 2560 ERTIQTLEDMLRTVVLDLDGSWETYLPLVEFAYNNSYQATIKMAPYEALYGRKCRSPANW 2739
            ER  Q LEDMLR  VLD  GSW+  LP  EF+YNNSYQA+++M+P EALYGRKCR+P  W
Sbjct: 1191 ERVNQILEDMLRACVLDFGGSWDKNLPYAEFSYNNSYQASLQMSPNEALYGRKCRTPLLW 1250

Query: 2740 DEVGERRIFGPEIIERTVGVIAKIRDR 2820
            D+ GER++FG +I+      +  I++R
Sbjct: 1251 DQTGERQVFGTDILREAEEKVKIIQER 1277



 Score =  280 bits (716), Expect(2) = 0.0
 Identities = 145/306 (47%), Positives = 190/306 (62%)
 Frame = +3

Query: 12   ETMTGMLPVFHIPALVLFDTGASHSFMSENFRRKLGLNCCDNNEALEVSIPSGETIKTKK 191
            + + G  PV  IPA VLFD+GA+HSF+S++F  K G+        L V+ P  +   T+ 
Sbjct: 338  DVVLGTFPVNSIPATVLFDSGATHSFLSKSFATKHGMEVVSLGRPLLVNTPGNQVFSTRY 397

Query: 192  TAREVELTISGQQMKADLYVLEMRDFDVILGIDWLSKNRATIKCYDREIEFEGSNGNRFV 371
                V + I G    + L +LE +D DVILG+DWLS++R  I C +R++    SNG    
Sbjct: 398  CP-SVTIEIEGVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRKVTLTNSNGETVS 456

Query: 372  FHGAKTNTRVKIVSAIKAIRMLRKRDCQGFLVNIKGKETNERKATDEAVVKEFLDVFPDD 551
            F  +   +                           G   N+    +  +V+++ DVFP+D
Sbjct: 457  FFASSPKSH--------------------------GVVLNQVALQEIPIVQDYPDVFPED 490

Query: 552  LPGIPPDRQVEFTIDLVPGAAPMSKAPYRMAPKELQELKIQIQDLLDKKFIRPSVSPWGA 731
            LPG+PP R +EF IDLVPG  P+ K PYRMA  EL E+K Q+ DLL K +IRPS SPWGA
Sbjct: 491  LPGMPPKRDIEFRIDLVPGTNPIHKRPYRMAANELAEVKKQVDDLLQKGYIRPSTSPWGA 550

Query: 732  PVLFVKKKDGSFRMCIDYRDLNRLTIKNKYPLPRIEDLFDQLKGASVFSKIDLRSGYHQL 911
            PV+FV+KKD + RMC+DYR LN +TIKNKYPLPRI+DLFDQLKGA+VFSKIDLRSGYHQL
Sbjct: 551  PVIFVEKKDHTQRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQL 610

Query: 912  KINDCD 929
            +I + D
Sbjct: 611  RIREED 616



 Score = 97.1 bits (240), Expect = 1e-16
 Identities = 44/97 (45%), Positives = 64/97 (65%)
 Frame = +3

Query: 2880 KGKLRPRYIGPFEILDRIGDVAYRLALPPELAAVHNVFHISMLRKYIADPSHIINHEELD 3059
            KGKL PR++GPF+I+ R G+VAY+L LPP +A +H+VFH+S L+K +  P+   + + ++
Sbjct: 1320 KGKLAPRFVGPFKIVSRRGEVAYQLELPPSMAGIHDVFHVSQLKKCLRVPTEEADPDCIE 1379

Query: 3060 VSNNLAYEESPVAILGKKVHKLRNREVPLVLVQWSRH 3170
            +  +L Y E PV IL     K RNR +    VQWS H
Sbjct: 1380 LQEDLTYVEKPVRILEVSERKTRNRVIRFCKVQWSNH 1416


>gb|ABB47191.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1443

 Score =  795 bits (2054), Expect(2) = 0.0
 Identities = 376/627 (59%), Positives = 480/627 (76%)
 Frame = +1

Query: 940  YLDKFVIVFIDDILIYSQDKEQHEEHLRIVLETLRQEKLYAKFSKCEFWLDRVVFLGHIV 1119
            YLDKFV+VFIDDILIYS+ KE+HEEHLR+ LE LR+ +LYAKFSKCEFWL  V FLGH++
Sbjct: 650  YLDKFVVVFIDDILIYSRTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVI 709

Query: 1120 TANGIEVDPSKVEAILNWKAPTNVGEVRSFLGLAGYYRRFIQDFSKIAKPLTHLTKKNEK 1299
            +A G+ VDPS VE++ NWK P  V E+RSFLGLAGYYRRFI++FSKIAKP+T L +K+ K
Sbjct: 710  SAGGVAVDPSNVESVTNWKQPKTVSEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQKDVK 769

Query: 1300 FQWTDQCENNFQELKQRLVTSPILTIPDGTEGFVIYTDASKLGLGCVLMQNGKVIAYASR 1479
            ++W+++CE +FQELK RL+++PIL +PD  +GF +Y DASKLGLGCVLMQ+GKV+AYASR
Sbjct: 770  YKWSEECEQSFQELKNRLISAPILILPDPKKGFQVYCDASKLGLGCVLMQDGKVVAYASR 829

Query: 1480 QLKTHEQNYPTHDLELAAVVHALKIWRHHLYGGKCEIFTDHKSLKYFFTQKELNMRQRRW 1659
            QL+ HE+NYPTHDLELAAVVHALKIWRH+L+G + E++TDHKSLKY FTQ +LNMRQRRW
Sbjct: 830  QLRPHEKNYPTHDLELAAVVHALKIWRHYLFGTRTEVYTDHKSLKYIFTQPDLNMRQRRW 889

Query: 1660 LELVKDYDCTIQYHPGKANVVADALSRKNSGQIATLLTQQESILRDFSNLRLEILRPPNQ 1839
            LEL+KDYD  I YHPGKANVVADALSRK   +          + ++F  L L I+     
Sbjct: 890  LELIKDYDMGIHYHPGKANVVADALSRKGYCKATEGRQLPLELCKEFERLNLGIV----- 944

Query: 1840 SDAVISSLIVQPTLRQRIKDAQKTDIFLNKMKQRVLAGSIQGFAIAPDETLVYDGRLCVP 2019
            S   +++L  +PTL  ++++AQ  D  + ++K+ +  G   GF      T+    R+CVP
Sbjct: 945  SRGFVAALEAKPTLIDQVREAQINDPDIQEIKKNMRRGKAIGFLEDEQGTVWLGERICVP 1004

Query: 2020 KDEDLRKEILDEAHNTPYTAHPGGTKMYRDLREIFWWRNMKRTIGKFVERCLICQQVKAE 2199
             ++DL+  IL EAH+T Y+ HPG TKMY+DL+E FWW +MKR I ++V  C +CQ+VKAE
Sbjct: 1005 DNKDLKDAILKEAHDTLYSIHPGSTKMYQDLKERFWWASMKREIAEYVAVCDVCQRVKAE 1064

Query: 2200 HQRPSGLLNPLDIPEWKWEHITMDFVTGLPRSVRKNDAIWVIVDRLTKSAHFIPVRMTFT 2379
            HQ+P+GLL PL IPEWKWE I MDF+TGLPR+   +D+IWVIVDRLTK A+FIPV+ T++
Sbjct: 1065 HQKPAGLLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRLTKVAYFIPVKTTYS 1124

Query: 2380 MDRFAQLYIEKIVSLHGVPVSIVSDRDPRFTSKFWESLHAAMKTKLKFSTAYHPQTDGQS 2559
              R A+LY+ +IV LHGVP  IVSDR  +FTS FW+ L   M +KL FSTAYHPQTDGQ+
Sbjct: 1125 GSRLAELYMARIVCLHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQT 1184

Query: 2560 ERTIQTLEDMLRTVVLDLDGSWETYLPLVEFAYNNSYQATIKMAPYEALYGRKCRSPANW 2739
            ER  Q LEDMLR   LD  GSW+  LP  EF+YNNSYQA+++MAPYEALYGRKCR+P  W
Sbjct: 1185 ERVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLW 1244

Query: 2740 DEVGERRIFGPEIIERTVGVIAKIRDR 2820
            D+ GER++FG +I+      +  I++R
Sbjct: 1245 DQTGERQVFGTDILREAEEKVKIIQER 1271



 Score =  279 bits (714), Expect(2) = 0.0
 Identities = 147/306 (48%), Positives = 197/306 (64%)
 Frame = +3

Query: 12   ETMTGMLPVFHIPALVLFDTGASHSFMSENFRRKLGLNCCDNNEALEVSIPSGETIKTKK 191
            + + G  PV  +PA VLFD+GA+HSF+S +F    G+   D    L VS PS + +  ++
Sbjct: 332  DVILGTFPVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSDQALSLQR 391

Query: 192  TAREVELTISGQQMKADLYVLEMRDFDVILGIDWLSKNRATIKCYDREIEFEGSNGNRFV 371
            +   V + I G    A+L +LE +D DVILG+DWL++++  I C +R++    ++G    
Sbjct: 392  SP-SVRIEIKGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDG---- 446

Query: 372  FHGAKTNTRVKIVSAIKAIRMLRKRDCQGFLVNIKGKETNERKATDEAVVKEFLDVFPDD 551
                    RV  V A+ +  +  K               N+    +  +V+E+ DVFPDD
Sbjct: 447  --------RVVTVHALSSESLRSK--------------LNQITLEEIPIVREYPDVFPDD 484

Query: 552  LPGIPPDRQVEFTIDLVPGAAPMSKAPYRMAPKELQELKIQIQDLLDKKFIRPSVSPWGA 731
            LPG+PP R +EF IDLVPG  P+ K PYRMA  EL E+K Q+ DLL K +IRPS SPWGA
Sbjct: 485  LPGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGA 544

Query: 732  PVLFVKKKDGSFRMCIDYRDLNRLTIKNKYPLPRIEDLFDQLKGASVFSKIDLRSGYHQL 911
            PV+FV+KKD + RMC+DYR LN +TIKNKYPLPRI+DLFDQLKGA+VFSKIDLRSGYHQL
Sbjct: 545  PVIFVEKKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQL 604

Query: 912  KINDCD 929
            +I + D
Sbjct: 605  RIKEED 610



 Score = 99.8 bits (247), Expect = 2e-17
 Identities = 45/97 (46%), Positives = 64/97 (65%)
 Frame = +3

Query: 2880 KGKLRPRYIGPFEILDRIGDVAYRLALPPELAAVHNVFHISMLRKYIADPSHIINHEELD 3059
            KGKL PR++GP++I+ R G+VAY+L LP  LA VHNVFH+S L+K +  P+   N ++++
Sbjct: 1314 KGKLAPRFVGPYKIVSRRGEVAYQLELPQSLAGVHNVFHVSQLKKSLRVPTEEANLDQIE 1373

Query: 3060 VSNNLAYEESPVAILGKKVHKLRNREVPLVLVQWSRH 3170
            V  +L Y E P+ IL     + RNR +    VQWS H
Sbjct: 1374 VQEDLTYVEKPIRILETNERRTRNRVIRFCKVQWSNH 1410


>gb|AAQ56454.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|34015280|gb|AAQ56471.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1735

 Score =  793 bits (2047), Expect(2) = 0.0
 Identities = 375/627 (59%), Positives = 478/627 (76%)
 Frame = +1

Query: 940  YLDKFVIVFIDDILIYSQDKEQHEEHLRIVLETLRQEKLYAKFSKCEFWLDRVVFLGHIV 1119
            YLDKFV+VFIDDILIYS+ KE+HEEHLR+ LE LR+ +LYAKFSKCEFWL  V FLGH++
Sbjct: 942  YLDKFVVVFIDDILIYSRTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVI 1001

Query: 1120 TANGIEVDPSKVEAILNWKAPTNVGEVRSFLGLAGYYRRFIQDFSKIAKPLTHLTKKNEK 1299
            +A G+ VDPS VE++ NWK P  V E+RSFLGLAGYYRRFI++FSKIAKP+T L +K+ K
Sbjct: 1002 SAGGVAVDPSNVESVTNWKQPKTVSEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQKDVK 1061

Query: 1300 FQWTDQCENNFQELKQRLVTSPILTIPDGTEGFVIYTDASKLGLGCVLMQNGKVIAYASR 1479
            ++W+++CE +FQELK RL+++PIL +PD  +GF +Y DASKLGLGCVLMQ+GKV+AYASR
Sbjct: 1062 YKWSEECEQSFQELKSRLISAPILILPDPKKGFQVYCDASKLGLGCVLMQDGKVVAYASR 1121

Query: 1480 QLKTHEQNYPTHDLELAAVVHALKIWRHHLYGGKCEIFTDHKSLKYFFTQKELNMRQRRW 1659
            QL+ HE+NYPTHDLELAAVVHALKIW H+L+G + E++TDHKSLKY FTQ +LNMRQRRW
Sbjct: 1122 QLRPHEKNYPTHDLELAAVVHALKIWCHYLFGTRTEVYTDHKSLKYIFTQPDLNMRQRRW 1181

Query: 1660 LELVKDYDCTIQYHPGKANVVADALSRKNSGQIATLLTQQESILRDFSNLRLEILRPPNQ 1839
            LEL+KDYD  I YHPGKANVVADALSRK              + ++F  L L I+     
Sbjct: 1182 LELIKDYDMGIHYHPGKANVVADALSRKGYCNATEGRQLPLELCKEFERLNLGIV----- 1236

Query: 1840 SDAVISSLIVQPTLRQRIKDAQKTDIFLNKMKQRVLAGSIQGFAIAPDETLVYDGRLCVP 2019
            S   +++L  +PTL  ++++AQ  D  + ++K+ +  G   GF      T+    R+CVP
Sbjct: 1237 SRGFVAALEAKPTLIDQVREAQINDPDIQEIKKNMRRGKAIGFLEDEQGTVWLGERICVP 1296

Query: 2020 KDEDLRKEILDEAHNTPYTAHPGGTKMYRDLREIFWWRNMKRTIGKFVERCLICQQVKAE 2199
             ++DL+  IL EAH+T Y+ HPG TK+Y+DL+E FWW +MKR I ++V  C +CQ+VKAE
Sbjct: 1297 DNKDLKDAILKEAHDTLYSIHPGSTKVYQDLKERFWWASMKREIAEYVAVCDVCQRVKAE 1356

Query: 2200 HQRPSGLLNPLDIPEWKWEHITMDFVTGLPRSVRKNDAIWVIVDRLTKSAHFIPVRMTFT 2379
            HQ+P+GLL PL IPEWKWE I MDF+TGLPR+   +D+IWVIVDRLTK AHFIPV+ T++
Sbjct: 1357 HQKPAGLLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYS 1416

Query: 2380 MDRFAQLYIEKIVSLHGVPVSIVSDRDPRFTSKFWESLHAAMKTKLKFSTAYHPQTDGQS 2559
              R A+LY+ +IV LHGVP  IVSDR  +FTS FW+ L   M +KL FSTAYHPQTDGQ+
Sbjct: 1417 GSRLAELYMARIVCLHGVPKKIVSDRGSQFTSNFWKKLQEEMVSKLNFSTAYHPQTDGQT 1476

Query: 2560 ERTIQTLEDMLRTVVLDLDGSWETYLPLVEFAYNNSYQATIKMAPYEALYGRKCRSPANW 2739
            ER  Q LEDMLR   LD  GSW+  LP  EF+YNNSYQA+++MAPYEALYGRKCR+P  W
Sbjct: 1477 ERVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLW 1536

Query: 2740 DEVGERRIFGPEIIERTVGVIAKIRDR 2820
            D+ GER++FG +I+      +  I++R
Sbjct: 1537 DQTGERQVFGTDILREAEEKVKIIQER 1563



 Score =  281 bits (720), Expect(2) = 0.0
 Identities = 147/306 (48%), Positives = 195/306 (63%)
 Frame = +3

Query: 12   ETMTGMLPVFHIPALVLFDTGASHSFMSENFRRKLGLNCCDNNEALEVSIPSGETIKTKK 191
            + + G  PV  +PA VLFD+GA+HSF+S +F    G+   D    L VS PS + +  ++
Sbjct: 624  DVILGTFPVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRHPLMVSTPSNQALSLQR 683

Query: 192  TAREVELTISGQQMKADLYVLEMRDFDVILGIDWLSKNRATIKCYDREIEFEGSNGNRFV 371
            +   V + I G    A+L +LE +D DVILG+DWL+++R  I C +R++    ++G    
Sbjct: 684  SP-SVRIEIKGVPFVANLILLESKDLDVILGMDWLARHRGVIDCANRKVTLTSNDGRVVT 742

Query: 372  FHGAKTNTRVKIVSAIKAIRMLRKRDCQGFLVNIKGKETNERKATDEAVVKEFLDVFPDD 551
             H   + +             LR R              N+    +  +V+E+ DVFPDD
Sbjct: 743  VHALSSES-------------LRSR-------------LNQITLEEIPIVREYPDVFPDD 776

Query: 552  LPGIPPDRQVEFTIDLVPGAAPMSKAPYRMAPKELQELKIQIQDLLDKKFIRPSVSPWGA 731
            LPG+PP R +EF IDLVPG  P+ K PYRMA  EL E+K Q+ DLL K +IRPS SPWGA
Sbjct: 777  LPGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGA 836

Query: 732  PVLFVKKKDGSFRMCIDYRDLNRLTIKNKYPLPRIEDLFDQLKGASVFSKIDLRSGYHQL 911
            PV+FV+KKD + RMC+DYR LN +TIKNKYPLPRI+DLFDQLKGA+VFSKIDLRSGYHQL
Sbjct: 837  PVIFVEKKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQL 896

Query: 912  KINDCD 929
            +I + D
Sbjct: 897  RIKEED 902



 Score =  101 bits (252), Expect = 5e-18
 Identities = 46/97 (47%), Positives = 64/97 (65%)
 Frame = +3

Query: 2880 KGKLRPRYIGPFEILDRIGDVAYRLALPPELAAVHNVFHISMLRKYIADPSHIINHEELD 3059
            KGKL PR++GP++I+ R G+VAY+L LP  LA VHNVFH+S L+K +  P+   N E+++
Sbjct: 1606 KGKLAPRFVGPYKIVSRRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPTEEANLEQIE 1665

Query: 3060 VSNNLAYEESPVAILGKKVHKLRNREVPLVLVQWSRH 3170
            V  +L Y E P+ IL     + RNR +    VQWS H
Sbjct: 1666 VQEDLTYVEKPIRILATSERRTRNRVIRFCKVQWSNH 1702


>gb|ABA95022.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1473

 Score =  794 bits (2050), Expect(2) = 0.0
 Identities = 376/627 (59%), Positives = 478/627 (76%)
 Frame = +1

Query: 940  YLDKFVIVFIDDILIYSQDKEQHEEHLRIVLETLRQEKLYAKFSKCEFWLDRVVFLGHIV 1119
            YLDKFV+VFIDDILIYS+ KE+HEEHLR+ LE LR+ +LYAKFSKCEFWL  V FLGH++
Sbjct: 680  YLDKFVVVFIDDILIYSRTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVI 739

Query: 1120 TANGIEVDPSKVEAILNWKAPTNVGEVRSFLGLAGYYRRFIQDFSKIAKPLTHLTKKNEK 1299
            +A G+ VDPS VE++ NWK P  V E+RSFLGLAGYYRRFI++FSKIAKP+T L +K+ K
Sbjct: 740  SAGGVAVDPSNVESVTNWKQPKTVSEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQKDVK 799

Query: 1300 FQWTDQCENNFQELKQRLVTSPILTIPDGTEGFVIYTDASKLGLGCVLMQNGKVIAYASR 1479
            ++W+++CE +FQELK RLV++PIL +P+  +GF +Y DASKLGLGCVLMQ+GKV+AYASR
Sbjct: 800  YKWSEECEQSFQELKSRLVSAPILILPNPKKGFQVYCDASKLGLGCVLMQDGKVVAYASR 859

Query: 1480 QLKTHEQNYPTHDLELAAVVHALKIWRHHLYGGKCEIFTDHKSLKYFFTQKELNMRQRRW 1659
            QL+ HE+NYPTHDLELAAVVHALKIWRH+L+G + E++TDHKSLKY FTQ +LNMRQRRW
Sbjct: 860  QLRPHEKNYPTHDLELAAVVHALKIWRHYLFGTRTEVYTDHKSLKYIFTQPDLNMRQRRW 919

Query: 1660 LELVKDYDCTIQYHPGKANVVADALSRKNSGQIATLLTQQESILRDFSNLRLEILRPPNQ 1839
            LEL+KDYD  I YHPGKANVVADALSRK              + ++F  L L I+     
Sbjct: 920  LELIKDYDMGIHYHPGKANVVADALSRKGYCNATEGRQLPLELCKEFERLNLGIV----- 974

Query: 1840 SDAVISSLIVQPTLRQRIKDAQKTDIFLNKMKQRVLAGSIQGFAIAPDETLVYDGRLCVP 2019
            S   +++L  +PTL  ++++AQ  D  + ++K+ +  G   GF      T+    R+CVP
Sbjct: 975  SRGFVAALEAKPTLIDQVREAQINDPDIQEIKKNMRRGKAIGFLEDEQGTVWLGERICVP 1034

Query: 2020 KDEDLRKEILDEAHNTPYTAHPGGTKMYRDLREIFWWRNMKRTIGKFVERCLICQQVKAE 2199
             ++DL+  IL EAH+T Y+ HPG TKMY+DL+E FWW +MKR I ++V  C +CQ+VKAE
Sbjct: 1035 DNKDLKDAILKEAHDTLYSIHPGSTKMYQDLKERFWWASMKREIAEYVAVCDVCQRVKAE 1094

Query: 2200 HQRPSGLLNPLDIPEWKWEHITMDFVTGLPRSVRKNDAIWVIVDRLTKSAHFIPVRMTFT 2379
            HQ+P+GLL PL IPEWKWE I MDF+TGLPR+   +D+IWVIVDRLTK AHFIPV+ T++
Sbjct: 1095 HQKPAGLLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYS 1154

Query: 2380 MDRFAQLYIEKIVSLHGVPVSIVSDRDPRFTSKFWESLHAAMKTKLKFSTAYHPQTDGQS 2559
              R A+LY+ +IV LHGVP  IVSDR  +FTS FW+ L   M +KL FS AYHPQTDGQ+
Sbjct: 1155 GSRLAELYMARIVCLHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSIAYHPQTDGQT 1214

Query: 2560 ERTIQTLEDMLRTVVLDLDGSWETYLPLVEFAYNNSYQATIKMAPYEALYGRKCRSPANW 2739
            ER  Q LEDMLR   LD  GSW+  LP  EF+YNNSYQA+++MAPYEALYGRKCR+P  W
Sbjct: 1215 ERVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLW 1274

Query: 2740 DEVGERRIFGPEIIERTVGVIAKIRDR 2820
            D+ GER++FG +I+      +  I++R
Sbjct: 1275 DQTGERQVFGTDILREAEEKVKVIQER 1301



 Score =  280 bits (716), Expect(2) = 0.0
 Identities = 146/306 (47%), Positives = 195/306 (63%)
 Frame = +3

Query: 12   ETMTGMLPVFHIPALVLFDTGASHSFMSENFRRKLGLNCCDNNEALEVSIPSGETIKTKK 191
            + + G  PV  +PA VLFD+GA+HSF+S +F    G+   D    L VS PS + +  ++
Sbjct: 362  DVILGTFPVNLVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQR 421

Query: 192  TAREVELTISGQQMKADLYVLEMRDFDVILGIDWLSKNRATIKCYDREIEFEGSNGNRFV 371
            +   V + I G    A+L +LE +D DVILG+DWL++++  I C +R++    ++G    
Sbjct: 422  SP-SVRIEIKGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGQVVT 480

Query: 372  FHGAKTNTRVKIVSAIKAIRMLRKRDCQGFLVNIKGKETNERKATDEAVVKEFLDVFPDD 551
             H   + +             LR R              N+    +  +V+E+ DVFPDD
Sbjct: 481  VHALSSES-------------LRSR-------------LNQITLEEIPIVREYSDVFPDD 514

Query: 552  LPGIPPDRQVEFTIDLVPGAAPMSKAPYRMAPKELQELKIQIQDLLDKKFIRPSVSPWGA 731
            LPG+PP R +EF IDLVPG  P+ K PYRMA  EL E+K Q+ DLL K +IRPS SPWGA
Sbjct: 515  LPGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGA 574

Query: 732  PVLFVKKKDGSFRMCIDYRDLNRLTIKNKYPLPRIEDLFDQLKGASVFSKIDLRSGYHQL 911
            PV+FV+KKD + RMC+DYR LN +TIKNKYPLPRI+DLFDQLKGA+VFSKIDLRSGYHQL
Sbjct: 575  PVIFVEKKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQL 634

Query: 912  KINDCD 929
            +I + D
Sbjct: 635  RIKEED 640



 Score =  100 bits (250), Expect = 7e-18
 Identities = 46/97 (47%), Positives = 64/97 (65%)
 Frame = +3

Query: 2880 KGKLRPRYIGPFEILDRIGDVAYRLALPPELAAVHNVFHISMLRKYIADPSHIINHEELD 3059
            KGKL PR++GP++I+ R G+VAY+L LP  LA VHNVFH+S L+K +  P+   N E+++
Sbjct: 1344 KGKLAPRFVGPYKIVSRRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPTEEANIEQIE 1403

Query: 3060 VSNNLAYEESPVAILGKKVHKLRNREVPLVLVQWSRH 3170
            V  +L Y E P+ IL     + RNR +    VQWS H
Sbjct: 1404 VQEDLTYVEKPIRILETNERRTRNRVIRFCKVQWSNH 1440


>gb|AAM93458.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|31430677|gb|AAP52558.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 1406

 Score =  798 bits (2060), Expect(2) = 0.0
 Identities = 377/627 (60%), Positives = 478/627 (76%)
 Frame = +1

Query: 940  YLDKFVIVFIDDILIYSQDKEQHEEHLRIVLETLRQEKLYAKFSKCEFWLDRVVFLGHIV 1119
            YLDKFV+VFIDDILIYSQ KE+HEEHLR+ LE LR+ +LYAKFSKCEFWL  V FLGH++
Sbjct: 613  YLDKFVVVFIDDILIYSQTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVI 672

Query: 1120 TANGIEVDPSKVEAILNWKAPTNVGEVRSFLGLAGYYRRFIQDFSKIAKPLTHLTKKNEK 1299
            +A G+ VDPS VE++ NWK P  V E+RSFLGLAGYYRRFI++FSKIAKP+T L +K+ K
Sbjct: 673  SAGGVAVDPSNVESVTNWKQPKTVSEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQKDVK 732

Query: 1300 FQWTDQCENNFQELKQRLVTSPILTIPDGTEGFVIYTDASKLGLGCVLMQNGKVIAYASR 1479
            ++W+++CE +FQELK RL+++PIL +PD  +GF +Y DASKLGLGCVLMQ+GKV+AYASR
Sbjct: 733  YKWSEECERSFQELKSRLISAPILILPDPKKGFQVYCDASKLGLGCVLMQDGKVVAYASR 792

Query: 1480 QLKTHEQNYPTHDLELAAVVHALKIWRHHLYGGKCEIFTDHKSLKYFFTQKELNMRQRRW 1659
            QL+ HE+NYPTHD+ELAAVVHALKIWRH+L+G + E++TDHKSLKY FTQ +LNMRQRRW
Sbjct: 793  QLRPHEKNYPTHDIELAAVVHALKIWRHYLFGTRTEVYTDHKSLKYIFTQPDLNMRQRRW 852

Query: 1660 LELVKDYDCTIQYHPGKANVVADALSRKNSGQIATLLTQQESILRDFSNLRLEILRPPNQ 1839
            LEL+KDYD  I YHPGKANVVADALSRK              + ++F  L L I+     
Sbjct: 853  LELIKDYDMGIHYHPGKANVVADALSRKGYCNATEGRQLPLELCKEFERLNLGIV----- 907

Query: 1840 SDAVISSLIVQPTLRQRIKDAQKTDIFLNKMKQRVLAGSIQGFAIAPDETLVYDGRLCVP 2019
                +++L  +PTL  ++++AQ  D  + ++K+ +  G   GF      T+    R+CVP
Sbjct: 908  GRGFVAALEAKPTLIDQVREAQINDPDIQEIKKNMRRGKAIGFLEDEHGTVWLGERICVP 967

Query: 2020 KDEDLRKEILDEAHNTPYTAHPGGTKMYRDLREIFWWRNMKRTIGKFVERCLICQQVKAE 2199
             ++DL+  IL EAH+T Y+ HPG TKMY+DL+E FWW +MKR I ++V  C +CQ+VKAE
Sbjct: 968  DNKDLKDAILKEAHDTLYSIHPGSTKMYQDLKERFWWASMKREIAEYVAVCDVCQRVKAE 1027

Query: 2200 HQRPSGLLNPLDIPEWKWEHITMDFVTGLPRSVRKNDAIWVIVDRLTKSAHFIPVRMTFT 2379
            HQ+P+GLL PL IPEWKWE I MDF+TGLPR+   +D+IWVIVDRLTK AHFIPV+ T++
Sbjct: 1028 HQKPAGLLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYS 1087

Query: 2380 MDRFAQLYIEKIVSLHGVPVSIVSDRDPRFTSKFWESLHAAMKTKLKFSTAYHPQTDGQS 2559
              R A+LY+ +IV LHGVP  IVSDR  +FTS FWE L   M +KL FSTAYHPQTDGQ+
Sbjct: 1088 GSRLAELYMARIVCLHGVPKKIVSDRGSQFTSNFWEKLQEEMGSKLNFSTAYHPQTDGQT 1147

Query: 2560 ERTIQTLEDMLRTVVLDLDGSWETYLPLVEFAYNNSYQATIKMAPYEALYGRKCRSPANW 2739
            ER  Q LEDMLR   LD  GSW+  LP  EF+YNNSYQA+++MAPYEALYGRKCR+P  W
Sbjct: 1148 ERVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLW 1207

Query: 2740 DEVGERRIFGPEIIERTVGVIAKIRDR 2820
            D+ GER++FG +I+      +  I++R
Sbjct: 1208 DQTGERQVFGTDILREAEEKVKIIQER 1234



 Score =  276 bits (705), Expect(2) = 0.0
 Identities = 145/306 (47%), Positives = 193/306 (63%)
 Frame = +3

Query: 12   ETMTGMLPVFHIPALVLFDTGASHSFMSENFRRKLGLNCCDNNEALEVSIPSGETIKTKK 191
            + + G   V  +PA VLFD+GA+HSF+S +F    G+   D    L VS PS + +  ++
Sbjct: 295  DVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQR 354

Query: 192  TAREVELTISGQQMKADLYVLEMRDFDVILGIDWLSKNRATIKCYDREIEFEGSNGNRFV 371
            +   V + I G    A+L +LE +D DVILG+DWL++++  I C +R++     +G    
Sbjct: 355  SP-SVRIEIQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLNSYDGRVVT 413

Query: 372  FHGAKTNTRVKIVSAIKAIRMLRKRDCQGFLVNIKGKETNERKATDEAVVKEFLDVFPDD 551
             H   + +             LR R              N+    +  +V+E+ DVFPDD
Sbjct: 414  VHALSSES-------------LRSR-------------LNQITLEEIPIVREYPDVFPDD 447

Query: 552  LPGIPPDRQVEFTIDLVPGAAPMSKAPYRMAPKELQELKIQIQDLLDKKFIRPSVSPWGA 731
            LPG+PP R +EF IDLVPG  P+ K PYRMA  EL E+K Q+ DLL K +IRPS SPWGA
Sbjct: 448  LPGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGA 507

Query: 732  PVLFVKKKDGSFRMCIDYRDLNRLTIKNKYPLPRIEDLFDQLKGASVFSKIDLRSGYHQL 911
            PV+FV+KKD + RMC+DYR LN +TIKNKYPLPRI+DLFDQLKGA+VFSKIDLRSGYHQL
Sbjct: 508  PVIFVEKKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQL 567

Query: 912  KINDCD 929
            +I + D
Sbjct: 568  RIKEED 573



 Score = 99.8 bits (247), Expect = 2e-17
 Identities = 45/97 (46%), Positives = 64/97 (65%)
 Frame = +3

Query: 2880 KGKLRPRYIGPFEILDRIGDVAYRLALPPELAAVHNVFHISMLRKYIADPSHIINHEELD 3059
            KGKL PR++GP++I+ R G+VAY+L LP  LA VHNVFH+S L+K +  P+   N ++++
Sbjct: 1277 KGKLAPRFVGPYKIVSRRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPTEEANIDQIE 1336

Query: 3060 VSNNLAYEESPVAILGKKVHKLRNREVPLVLVQWSRH 3170
            V  +L Y E P+ IL     + RNR +    VQWS H
Sbjct: 1337 VQEDLTYVEKPIRILETNERRTRNRVIRFCKVQWSNH 1373


>gb|AAN09852.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1715

 Score =  795 bits (2054), Expect(2) = 0.0
 Identities = 376/627 (59%), Positives = 478/627 (76%)
 Frame = +1

Query: 940  YLDKFVIVFIDDILIYSQDKEQHEEHLRIVLETLRQEKLYAKFSKCEFWLDRVVFLGHIV 1119
            YLDKFV+VFIDDILIYS+ KE+HEEHLR+ LE LR+ +LYAKFSKCEFWL  V FLGHI+
Sbjct: 922  YLDKFVVVFIDDILIYSRTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHII 981

Query: 1120 TANGIEVDPSKVEAILNWKAPTNVGEVRSFLGLAGYYRRFIQDFSKIAKPLTHLTKKNEK 1299
            +A G+ VDPS VE++ NWK P  V E+RSFLGLAGYYRRFI++FSKIAKP+T L +K+ K
Sbjct: 982  SAGGVAVDPSNVESVTNWKQPKTVSEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQKDVK 1041

Query: 1300 FQWTDQCENNFQELKQRLVTSPILTIPDGTEGFVIYTDASKLGLGCVLMQNGKVIAYASR 1479
            ++W+++CE +FQELK RL+++PIL +PD  +GF +Y DASKLGLGCVLMQ+GKV+AYASR
Sbjct: 1042 YKWSEECEQSFQELKSRLISAPILILPDPKKGFQVYCDASKLGLGCVLMQDGKVVAYASR 1101

Query: 1480 QLKTHEQNYPTHDLELAAVVHALKIWRHHLYGGKCEIFTDHKSLKYFFTQKELNMRQRRW 1659
            QL+ HE+NYPTHD+ELAAVVHALKIWRH+L+G + E++TDHKSLKY FTQ +LNMRQRRW
Sbjct: 1102 QLRPHEKNYPTHDIELAAVVHALKIWRHYLFGTRTEVYTDHKSLKYIFTQSDLNMRQRRW 1161

Query: 1660 LELVKDYDCTIQYHPGKANVVADALSRKNSGQIATLLTQQESILRDFSNLRLEILRPPNQ 1839
            LEL+KDYD  I YHPGKANVVADALSRK              + ++F  L L I+     
Sbjct: 1162 LELIKDYDMGIHYHPGKANVVADALSRKGYCNATEGRQLPLELCKEFERLNLGIV----- 1216

Query: 1840 SDAVISSLIVQPTLRQRIKDAQKTDIFLNKMKQRVLAGSIQGFAIAPDETLVYDGRLCVP 2019
                +++L  +PTL  ++++AQ  D  + ++K+ +  G   GF      T+    R+CVP
Sbjct: 1217 GRGFVAALEAKPTLIDQVREAQINDPDIQEIKKNMRRGKAIGFLEDEHGTVWLGERICVP 1276

Query: 2020 KDEDLRKEILDEAHNTPYTAHPGGTKMYRDLREIFWWRNMKRTIGKFVERCLICQQVKAE 2199
             ++DL+  IL EAH+T Y+ HPG TKMY+DL+E FWW +MKR I ++V  C +CQ+VKAE
Sbjct: 1277 DNKDLKDAILKEAHDTLYSIHPGSTKMYQDLKERFWWASMKREIAEYVAVCDVCQRVKAE 1336

Query: 2200 HQRPSGLLNPLDIPEWKWEHITMDFVTGLPRSVRKNDAIWVIVDRLTKSAHFIPVRMTFT 2379
            HQ+P+GLL PL IPEWKWE I MDF+TGLPR+   +D+IWVIVDRLTK AHFIPV+ T++
Sbjct: 1337 HQKPAGLLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYS 1396

Query: 2380 MDRFAQLYIEKIVSLHGVPVSIVSDRDPRFTSKFWESLHAAMKTKLKFSTAYHPQTDGQS 2559
              R A+LY+ +IV LHGVP  IVSDR  +FTS FW+ L   M +KL FSTAYHPQTDGQ+
Sbjct: 1397 GSRLAELYMARIVCLHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQT 1456

Query: 2560 ERTIQTLEDMLRTVVLDLDGSWETYLPLVEFAYNNSYQATIKMAPYEALYGRKCRSPANW 2739
            ER  Q LEDMLR   LD  GSW+  LP  EF+YNNSYQA+++MAPYEALYGRKCR+P  W
Sbjct: 1457 ERVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLW 1516

Query: 2740 DEVGERRIFGPEIIERTVGVIAKIRDR 2820
            D+ GER++FG +I+      +  I++R
Sbjct: 1517 DQTGERQVFGTDILREAEEKVKIIQER 1543



 Score =  276 bits (707), Expect(2) = 0.0
 Identities = 146/306 (47%), Positives = 194/306 (63%)
 Frame = +3

Query: 12   ETMTGMLPVFHIPALVLFDTGASHSFMSENFRRKLGLNCCDNNEALEVSIPSGETIKTKK 191
            + + GM  V  +PA VLFD+GA+HSF+S +F    G+   D    L VS PS + +  ++
Sbjct: 604  DVILGMFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRCPLMVSTPSNQALSLQR 663

Query: 192  TAREVELTISGQQMKADLYVLEMRDFDVILGIDWLSKNRATIKCYDREIEFEGSNGNRFV 371
            +   V + I G    A+L +LE +D DVILG+DWL++++  I C +R++     +G    
Sbjct: 664  SP-SVRIEIQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLNSYDGRVVT 722

Query: 372  FHGAKTNTRVKIVSAIKAIRMLRKRDCQGFLVNIKGKETNERKATDEAVVKEFLDVFPDD 551
             H   + +             LR R              N+    +  +V+E+ DVFPDD
Sbjct: 723  VHALSSES-------------LRSR-------------LNQITLEEIPIVREYPDVFPDD 756

Query: 552  LPGIPPDRQVEFTIDLVPGAAPMSKAPYRMAPKELQELKIQIQDLLDKKFIRPSVSPWGA 731
            LPG+PP R +EF IDLVPG  P+ K PYRMA  EL E+K Q+ DLL K +IRPS SPWGA
Sbjct: 757  LPGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGA 816

Query: 732  PVLFVKKKDGSFRMCIDYRDLNRLTIKNKYPLPRIEDLFDQLKGASVFSKIDLRSGYHQL 911
            PV+FV+KKD + RMC+DYR LN +TIKNKYPLPRI+DLFDQLKGA+VFSKIDLRSGYHQL
Sbjct: 817  PVIFVEKKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQL 876

Query: 912  KINDCD 929
            +I + D
Sbjct: 877  RIKEED 882



 Score =  100 bits (250), Expect = 8e-18
 Identities = 46/97 (47%), Positives = 64/97 (65%)
 Frame = +3

Query: 2880 KGKLRPRYIGPFEILDRIGDVAYRLALPPELAAVHNVFHISMLRKYIADPSHIINHEELD 3059
            KGKL PR++GP++I+ R G+VAY+L LP  LA VHNVFH+S L+K +  P+   N E+++
Sbjct: 1586 KGKLAPRFVGPYKIVSRRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPTEEANIEQIE 1645

Query: 3060 VSNNLAYEESPVAILGKKVHKLRNREVPLVLVQWSRH 3170
            V  +L Y E P+ IL     + RNR +    VQWS H
Sbjct: 1646 VQEDLTYVEKPIRILETNERRTRNRVIRFCKVQWSNH 1682


>emb|CAH66284.1| OSIGBa0161P06.1 [Oryza sativa Indica Group]
          Length = 1665

 Score =  797 bits (2059), Expect(2) = 0.0
 Identities = 372/627 (59%), Positives = 483/627 (77%)
 Frame = +1

Query: 940  YLDKFVIVFIDDILIYSQDKEQHEEHLRIVLETLRQEKLYAKFSKCEFWLDRVVFLGHIV 1119
            YLDKFV+VFIDDILIYS+ KE+HEEHLR+ LE LR+ +LYAKFSKCEFWL  V FLGH++
Sbjct: 872  YLDKFVVVFIDDILIYSKTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVI 931

Query: 1120 TANGIEVDPSKVEAILNWKAPTNVGEVRSFLGLAGYYRRFIQDFSKIAKPLTHLTKKNEK 1299
            ++ G+ VDPS VE++L+WK P  V EVRSFLGLAGYYRRFI++FSKIA+P+T L +K  K
Sbjct: 932  SSGGVAVDPSNVESVLSWKQPKTVSEVRSFLGLAGYYRRFIENFSKIARPMTRLLQKEVK 991

Query: 1300 FQWTDQCENNFQELKQRLVTSPILTIPDGTEGFVIYTDASKLGLGCVLMQNGKVIAYASR 1479
            ++WT+ CE +FQELK+RLVT+P+L +PD  +GF +Y DAS+LGLGCVLMQ GKV+AYASR
Sbjct: 992  YKWTEDCERSFQELKKRLVTAPVLILPDSRKGFQVYCDASRLGLGCVLMQEGKVVAYASR 1051

Query: 1480 QLKTHEQNYPTHDLELAAVVHALKIWRHHLYGGKCEIFTDHKSLKYFFTQKELNMRQRRW 1659
            QL+ HE NYPTHDLELAAVVHALKIWRH+LYG + E++TDHKSLKY FTQ +LNMRQRRW
Sbjct: 1052 QLRPHENNYPTHDLELAAVVHALKIWRHYLYGNRTEVYTDHKSLKYIFTQPDLNMRQRRW 1111

Query: 1660 LELVKDYDCTIQYHPGKANVVADALSRKNSGQIATLLTQQESILRDFSNLRLEILRPPNQ 1839
            LEL+KDYD  I YHPGKANVVADALSRK+   ++   +    + ++F  L L I+     
Sbjct: 1112 LELIKDYDMEIHYHPGKANVVADALSRKSYCNMSEGRSLPWELCQEFEKLNLGIV----- 1166

Query: 1840 SDAVISSLIVQPTLRQRIKDAQKTDIFLNKMKQRVLAGSIQGFAIAPDETLVYDGRLCVP 2019
            S   +++L  +PTL  +I++AQ  D  + ++K+ +  G   GF      T+    R+CVP
Sbjct: 1167 SKGFVAALEAKPTLFDQIREAQVNDPDIQEIKKNMRRGKAIGFVEDEQGTVWLGERICVP 1226

Query: 2020 KDEDLRKEILDEAHNTPYTAHPGGTKMYRDLREIFWWRNMKRTIGKFVERCLICQQVKAE 2199
            ++++L+  I+ EAH T Y+ HPG TKMY+DL++ FWW +M+R I ++V  C +CQ+VKAE
Sbjct: 1227 ENKELKDTIMKEAHETLYSIHPGSTKMYQDLKQQFWWASMRREIAEYVALCDVCQRVKAE 1286

Query: 2200 HQRPSGLLNPLDIPEWKWEHITMDFVTGLPRSVRKNDAIWVIVDRLTKSAHFIPVRMTFT 2379
            HQ+P+GLL PL IPEWKWE I MDF+TGLPR+   +D+IWV+VDRLTK AHFIPV+ T+T
Sbjct: 1287 HQKPAGLLQPLKIPEWKWEEIGMDFITGLPRTSAGHDSIWVVVDRLTKVAHFIPVKTTYT 1346

Query: 2380 MDRFAQLYIEKIVSLHGVPVSIVSDRDPRFTSKFWESLHAAMKTKLKFSTAYHPQTDGQS 2559
              + A+LY+ ++V LHGVP  IVSDR  +FTSKFW+ L + + T+L FSTAYHPQTDGQ+
Sbjct: 1347 GHKLAELYMARVVCLHGVPKKIVSDRGSQFTSKFWQKLQSELGTRLNFSTAYHPQTDGQT 1406

Query: 2560 ERTIQTLEDMLRTVVLDLDGSWETYLPLVEFAYNNSYQATIKMAPYEALYGRKCRSPANW 2739
            ER  Q LEDMLR  VLD  GSW+  LP  EF+YNNSYQA+++M+P EALYGRKCR+P  W
Sbjct: 1407 ERVNQILEDMLRACVLDFGGSWDKNLPYAEFSYNNSYQASLQMSPNEALYGRKCRTPLLW 1466

Query: 2740 DEVGERRIFGPEIIERTVGVIAKIRDR 2820
            D+ GER++FG +I+      +  I++R
Sbjct: 1467 DQTGERQVFGTDILREAEEKVKIIQER 1493



 Score =  275 bits (702), Expect(2) = 0.0
 Identities = 143/306 (46%), Positives = 189/306 (61%)
 Frame = +3

Query: 12   ETMTGMLPVFHIPALVLFDTGASHSFMSENFRRKLGLNCCDNNEALEVSIPSGETIKTKK 191
            + + G  PV  IPA VLFD+GA+HSF+S++F  K G+        L V+ P  +   T+ 
Sbjct: 554  DVVLGTFPVNSIPATVLFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNTPGNQVFSTQY 613

Query: 192  TAREVELTISGQQMKADLYVLEMRDFDVILGIDWLSKNRATIKCYDREIEFEGSNGNRFV 371
                V + I      + L +LE +D DVILG+DWLS++R  I C +R++    S+G    
Sbjct: 614  CP-SVTIEIEEVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRKVTLTSSSGETVS 672

Query: 372  FHGAKTNTRVKIVSAIKAIRMLRKRDCQGFLVNIKGKETNERKATDEAVVKEFLDVFPDD 551
            F  +   +                           G   N+    +  +V+++ DVFP+D
Sbjct: 673  FFASSPKSH--------------------------GVVLNQVALQEIPIVQDYPDVFPED 706

Query: 552  LPGIPPDRQVEFTIDLVPGAAPMSKAPYRMAPKELQELKIQIQDLLDKKFIRPSVSPWGA 731
            LPG+PP R +EF IDLVPG  P+ K PYRMA  EL E+K Q+ DLL K +IRPS SPWGA
Sbjct: 707  LPGMPPKRDIEFRIDLVPGTNPIHKRPYRMAANELAEVKKQVDDLLQKGYIRPSTSPWGA 766

Query: 732  PVLFVKKKDGSFRMCIDYRDLNRLTIKNKYPLPRIEDLFDQLKGASVFSKIDLRSGYHQL 911
            PV+FV+KKD + RMC+DYR LN +TIKNKYPLPRI+DLFDQLKGA+VFSKIDLRSGYHQL
Sbjct: 767  PVIFVEKKDHTQRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQL 826

Query: 912  KINDCD 929
            +I + D
Sbjct: 827  RIREED 832



 Score = 98.6 bits (244), Expect = 4e-17
 Identities = 44/97 (45%), Positives = 64/97 (65%)
 Frame = +3

Query: 2880 KGKLRPRYIGPFEILDRIGDVAYRLALPPELAAVHNVFHISMLRKYIADPSHIINHEELD 3059
            KGKL PR++GPF+I+ R G+VAY+L LPP +A +H+VFH+S L+K +  P+   + + ++
Sbjct: 1536 KGKLAPRFVGPFKIVSRRGEVAYQLELPPSMAGIHDVFHVSQLKKCLRVPTEEADPDRIE 1595

Query: 3060 VSNNLAYEESPVAILGKKVHKLRNREVPLVLVQWSRH 3170
            +  +L Y E PV IL     K RNR +    VQWS H
Sbjct: 1596 LQEDLTYVEKPVRILEVSERKTRNRVIRFCKVQWSNH 1632


>gb|ABG65971.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1475

 Score =  795 bits (2054), Expect(2) = 0.0
 Identities = 376/627 (59%), Positives = 478/627 (76%)
 Frame = +1

Query: 940  YLDKFVIVFIDDILIYSQDKEQHEEHLRIVLETLRQEKLYAKFSKCEFWLDRVVFLGHIV 1119
            YLDKFV+VFIDDILIYS+ KE+HEEHLR+ LE LR+ +LYAKFSKCEFWL  V FLGHI+
Sbjct: 682  YLDKFVVVFIDDILIYSRTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHII 741

Query: 1120 TANGIEVDPSKVEAILNWKAPTNVGEVRSFLGLAGYYRRFIQDFSKIAKPLTHLTKKNEK 1299
            +A G+ VDPS VE++ NWK P  V E+RSFLGLAGYYRRFI++FSKIAKP+T L +K+ K
Sbjct: 742  SAGGVAVDPSNVESVTNWKQPKTVSEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQKDVK 801

Query: 1300 FQWTDQCENNFQELKQRLVTSPILTIPDGTEGFVIYTDASKLGLGCVLMQNGKVIAYASR 1479
            ++W+++CE +FQELK RL+++PIL +PD  +GF +Y DASKLGLGCVLMQ+GKV+AYASR
Sbjct: 802  YKWSEECEQSFQELKSRLISAPILILPDPKKGFQVYCDASKLGLGCVLMQDGKVVAYASR 861

Query: 1480 QLKTHEQNYPTHDLELAAVVHALKIWRHHLYGGKCEIFTDHKSLKYFFTQKELNMRQRRW 1659
            QL+ HE+NYPTHD+ELAAVVHALKIWRH+L+G + E++TDHKSLKY FTQ +LNMRQRRW
Sbjct: 862  QLRPHEKNYPTHDIELAAVVHALKIWRHYLFGTRTEVYTDHKSLKYIFTQSDLNMRQRRW 921

Query: 1660 LELVKDYDCTIQYHPGKANVVADALSRKNSGQIATLLTQQESILRDFSNLRLEILRPPNQ 1839
            LEL+KDYD  I YHPGKANVVADALSRK              + ++F  L L I+     
Sbjct: 922  LELIKDYDMGIHYHPGKANVVADALSRKGYCNATEGRQLPLELCKEFERLNLGIV----- 976

Query: 1840 SDAVISSLIVQPTLRQRIKDAQKTDIFLNKMKQRVLAGSIQGFAIAPDETLVYDGRLCVP 2019
                +++L  +PTL  ++++AQ  D  + ++K+ +  G   GF      T+    R+CVP
Sbjct: 977  GRGFVAALEAKPTLIDQVREAQINDPDIQEIKKNMRRGKAIGFLEDEHGTVWLGERICVP 1036

Query: 2020 KDEDLRKEILDEAHNTPYTAHPGGTKMYRDLREIFWWRNMKRTIGKFVERCLICQQVKAE 2199
             ++DL+  IL EAH+T Y+ HPG TKMY+DL+E FWW +MKR I ++V  C +CQ+VKAE
Sbjct: 1037 DNKDLKDAILKEAHDTLYSIHPGSTKMYQDLKERFWWASMKREIAEYVAVCDVCQRVKAE 1096

Query: 2200 HQRPSGLLNPLDIPEWKWEHITMDFVTGLPRSVRKNDAIWVIVDRLTKSAHFIPVRMTFT 2379
            HQ+P+GLL PL IPEWKWE I MDF+TGLPR+   +D+IWVIVDRLTK AHFIPV+ T++
Sbjct: 1097 HQKPAGLLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYS 1156

Query: 2380 MDRFAQLYIEKIVSLHGVPVSIVSDRDPRFTSKFWESLHAAMKTKLKFSTAYHPQTDGQS 2559
              R A+LY+ +IV LHGVP  IVSDR  +FTS FW+ L   M +KL FSTAYHPQTDGQ+
Sbjct: 1157 GSRLAELYMARIVCLHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQT 1216

Query: 2560 ERTIQTLEDMLRTVVLDLDGSWETYLPLVEFAYNNSYQATIKMAPYEALYGRKCRSPANW 2739
            ER  Q LEDMLR   LD  GSW+  LP  EF+YNNSYQA+++MAPYEALYGRKCR+P  W
Sbjct: 1217 ERVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLW 1276

Query: 2740 DEVGERRIFGPEIIERTVGVIAKIRDR 2820
            D+ GER++FG +I+      +  I++R
Sbjct: 1277 DQTGERQVFGTDILREAEEKVKIIQER 1303



 Score =  276 bits (707), Expect(2) = 0.0
 Identities = 146/306 (47%), Positives = 194/306 (63%)
 Frame = +3

Query: 12   ETMTGMLPVFHIPALVLFDTGASHSFMSENFRRKLGLNCCDNNEALEVSIPSGETIKTKK 191
            + + GM  V  +PA VLFD+GA+HSF+S +F    G+   D    L VS PS + +  ++
Sbjct: 364  DVILGMFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRCPLMVSTPSNQALSLQR 423

Query: 192  TAREVELTISGQQMKADLYVLEMRDFDVILGIDWLSKNRATIKCYDREIEFEGSNGNRFV 371
            +   V + I G    A+L +LE +D DVILG+DWL++++  I C +R++     +G    
Sbjct: 424  SP-SVRIEIQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLNSYDGRVVT 482

Query: 372  FHGAKTNTRVKIVSAIKAIRMLRKRDCQGFLVNIKGKETNERKATDEAVVKEFLDVFPDD 551
             H   + +             LR R              N+    +  +V+E+ DVFPDD
Sbjct: 483  VHALSSES-------------LRSR-------------LNQITLEEIPIVREYPDVFPDD 516

Query: 552  LPGIPPDRQVEFTIDLVPGAAPMSKAPYRMAPKELQELKIQIQDLLDKKFIRPSVSPWGA 731
            LPG+PP R +EF IDLVPG  P+ K PYRMA  EL E+K Q+ DLL K +IRPS SPWGA
Sbjct: 517  LPGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGA 576

Query: 732  PVLFVKKKDGSFRMCIDYRDLNRLTIKNKYPLPRIEDLFDQLKGASVFSKIDLRSGYHQL 911
            PV+FV+KKD + RMC+DYR LN +TIKNKYPLPRI+DLFDQLKGA+VFSKIDLRSGYHQL
Sbjct: 577  PVIFVEKKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQL 636

Query: 912  KINDCD 929
            +I + D
Sbjct: 637  RIKEED 642



 Score =  100 bits (250), Expect = 8e-18
 Identities = 46/97 (47%), Positives = 64/97 (65%)
 Frame = +3

Query: 2880 KGKLRPRYIGPFEILDRIGDVAYRLALPPELAAVHNVFHISMLRKYIADPSHIINHEELD 3059
            KGKL PR++GP++I+ R G+VAY+L LP  LA VHNVFH+S L+K +  P+   N E+++
Sbjct: 1346 KGKLAPRFVGPYKIVSRRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPTEEANIEQIE 1405

Query: 3060 VSNNLAYEESPVAILGKKVHKLRNREVPLVLVQWSRH 3170
            V  +L Y E P+ IL     + RNR +    VQWS H
Sbjct: 1406 VQEDLTYVEKPIRILETNERRTRNRVIRFCKVQWSNH 1442


>gb|AAV31274.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|54287634|gb|AAV31378.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1400

 Score =  795 bits (2053), Expect(2) = 0.0
 Identities = 377/627 (60%), Positives = 478/627 (76%)
 Frame = +1

Query: 940  YLDKFVIVFIDDILIYSQDKEQHEEHLRIVLETLRQEKLYAKFSKCEFWLDRVVFLGHIV 1119
            YLDKFV+VFIDDILIYS+ KE+HEEHLR+ LE LR+ +LYAKFSKCEFWL  V FLGH++
Sbjct: 680  YLDKFVVVFIDDILIYSRTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVI 739

Query: 1120 TANGIEVDPSKVEAILNWKAPTNVGEVRSFLGLAGYYRRFIQDFSKIAKPLTHLTKKNEK 1299
            +A G+ VDPS VE++ NWK P  V E+RSFLGLAGYYRRFI++FSKIAKP+T L +K+ K
Sbjct: 740  SAGGVAVDPSNVESVTNWKQPKTVSEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQKDVK 799

Query: 1300 FQWTDQCENNFQELKQRLVTSPILTIPDGTEGFVIYTDASKLGLGCVLMQNGKVIAYASR 1479
            ++W+++CE +FQELK RL+++PIL +PD  +GF +Y DASKLGLGCVLMQ+GKV+AYASR
Sbjct: 800  YKWSEECEQSFQELKNRLISAPILILPDPKKGFQVYCDASKLGLGCVLMQDGKVVAYASR 859

Query: 1480 QLKTHEQNYPTHDLELAAVVHALKIWRHHLYGGKCEIFTDHKSLKYFFTQKELNMRQRRW 1659
            QL+ HE+NYPTHDLELAAVVHALKIWRH+L+G + E++TDHKSLKY FTQ +LNMRQRRW
Sbjct: 860  QLRPHEKNYPTHDLELAAVVHALKIWRHYLFGTRTEVYTDHKSLKYIFTQPDLNMRQRRW 919

Query: 1660 LELVKDYDCTIQYHPGKANVVADALSRKNSGQIATLLTQQESILRDFSNLRLEILRPPNQ 1839
            LEL+KDYD  I YHPGKANVVADALSRK              + ++F  L L I+     
Sbjct: 920  LELIKDYDMGIHYHPGKANVVADALSRKGYCNATEGRQLPLELCQEFERLNLGIV----- 974

Query: 1840 SDAVISSLIVQPTLRQRIKDAQKTDIFLNKMKQRVLAGSIQGFAIAPDETLVYDGRLCVP 2019
            S   +++L  +PTL  ++++AQ  D  + ++K+ +  G   GF      T+    R+CVP
Sbjct: 975  SRGFVAALEAKPTLIDQVREAQINDPDIQEIKKNMRRGKAIGFLEDEQGTVWLGERICVP 1034

Query: 2020 KDEDLRKEILDEAHNTPYTAHPGGTKMYRDLREIFWWRNMKRTIGKFVERCLICQQVKAE 2199
             ++DL+  IL EAH+T Y+ HPG TKMY+DL+E FWW +MKR I ++V  C +CQ+VKAE
Sbjct: 1035 DNKDLKDVILKEAHDTLYSIHPGSTKMYQDLKERFWWASMKREIAEYVAVCDVCQRVKAE 1094

Query: 2200 HQRPSGLLNPLDIPEWKWEHITMDFVTGLPRSVRKNDAIWVIVDRLTKSAHFIPVRMTFT 2379
            HQ+P+GLL PL IPEWKWE I MDF+TGLPR+   +D+IWVIVDRLTK AHFIPV+ T++
Sbjct: 1095 HQKPAGLLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYS 1154

Query: 2380 MDRFAQLYIEKIVSLHGVPVSIVSDRDPRFTSKFWESLHAAMKTKLKFSTAYHPQTDGQS 2559
              R A+LY+ +IV  HGVP  IVSDR  +FTS FW+ L   M +KL FSTAYHPQTDGQ+
Sbjct: 1155 GSRLAELYMARIVCSHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQT 1214

Query: 2560 ERTIQTLEDMLRTVVLDLDGSWETYLPLVEFAYNNSYQATIKMAPYEALYGRKCRSPANW 2739
            ER  Q LEDMLR   LD  GSW+  LP  EF+YNNSYQA+I+MAPYEALYGRKCR+P  W
Sbjct: 1215 ERVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASIQMAPYEALYGRKCRTPLLW 1274

Query: 2740 DEVGERRIFGPEIIERTVGVIAKIRDR 2820
            D+ GER++FG +I+      +  I++R
Sbjct: 1275 DQTGERQVFGTDILREAEEKVKIIQER 1301



 Score =  276 bits (707), Expect(2) = 0.0
 Identities = 145/306 (47%), Positives = 194/306 (63%)
 Frame = +3

Query: 12   ETMTGMLPVFHIPALVLFDTGASHSFMSENFRRKLGLNCCDNNEALEVSIPSGETIKTKK 191
            + + G   V  +PA VLFD+GA+HSF+S +F    G+   D    L VS PS + +  ++
Sbjct: 362  DVILGTFSVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQR 421

Query: 192  TAREVELTISGQQMKADLYVLEMRDFDVILGIDWLSKNRATIKCYDREIEFEGSNGNRFV 371
            +   V + I G    A+L +LE +D DVILG+DWL++++  I C +R++    ++G    
Sbjct: 422  SP-SVRIEIQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLISNDGRVVT 480

Query: 372  FHGAKTNTRVKIVSAIKAIRMLRKRDCQGFLVNIKGKETNERKATDEAVVKEFLDVFPDD 551
             H   + +             LR R              N+    +  +V+E+ DVFPDD
Sbjct: 481  VHALSSES-------------LRSR-------------LNQITLEEIPIVREYPDVFPDD 514

Query: 552  LPGIPPDRQVEFTIDLVPGAAPMSKAPYRMAPKELQELKIQIQDLLDKKFIRPSVSPWGA 731
            LPG+PP R +EF IDLVPG  P+ K PYRMA  EL E+K Q+ DLL K +IRPS SPWGA
Sbjct: 515  LPGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGA 574

Query: 732  PVLFVKKKDGSFRMCIDYRDLNRLTIKNKYPLPRIEDLFDQLKGASVFSKIDLRSGYHQL 911
            PV+FV+KKD + RMC+DYR LN +TIKNKYPLPRI+DLFDQLKGA+VFSKIDLRSGYHQL
Sbjct: 575  PVIFVEKKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQL 634

Query: 912  KINDCD 929
            +I + D
Sbjct: 635  RIKEED 640



 Score = 69.3 bits (168), Expect = 3e-08
 Identities = 31/57 (54%), Positives = 42/57 (73%)
 Frame = +3

Query: 2880 KGKLRPRYIGPFEILDRIGDVAYRLALPPELAAVHNVFHISMLRKYIADPSHIINHE 3050
            KGKL PR++GP++I+ R G+VAY+L LP  LA VHNVFH+S L+K +  P+   N E
Sbjct: 1344 KGKLAPRFVGPYKIVSRRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPTEEANLE 1400