BLASTX nr result
ID: Rehmannia27_contig00001678
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia27_contig00001678
(5430 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AMN10083.1| RNA-dependent RNA polymerase [Plantago asiatica m... 2057 0.0
gb|AAX19931.1| viral replicase [Nandina mosaic virus] 2053 0.0
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ... 2039 0.0
emb|CEN56830.1| RNA-dependent RNA polymerase [Plantago asiatica ... 2036 0.0
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ... 2035 0.0
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ... 2035 0.0
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ... 2034 0.0
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ... 2034 0.0
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ... 2033 0.0
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ... 2029 0.0
gb|AMD78101.1| RdRP [Plantago asiatica mosaic virus] 2027 0.0
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1... 1963 0.0
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi... 1691 0.0
dbj|BAU45640.1| RNA-dependent RNA polymerase [Hydrangea ringspot... 1305 0.0
dbj|BAU45634.1| RNA-dependent RNA polymerase [Hydrangea ringspot... 1304 0.0
gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago a... 1286 0.0
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus] 1266 0.0
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5... 1259 0.0
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo... 1059 0.0
gb|ALQ32669.1| ORF1 [Bamboo mosaic virus] 992 0.0
>gb|AMN10083.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1387
Score = 2057 bits (5330), Expect = 0.0
Identities = 1013/1195 (84%), Positives = 1065/1195 (89%)
Frame = +1
Query: 64 RLRSLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTV 243
RL++LYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH+YDQLEWLTV
Sbjct: 168 RLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHRYDQLEWLTV 227
Query: 244 GHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNC 423
GHLTA QPTITAQRLETKGANHLFIFQRGNYLTP RRTF T++HYVTVP IFLPE YNC
Sbjct: 228 GHLTAPGQPTITAQRLETKGANHLFIFQRGNYLTPARRTFATSDHYVTVPQIFLPEDYNC 287
Query: 424 RTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTAS 603
RTPISKT MMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTAS
Sbjct: 288 RTPISKTTMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTAS 347
Query: 604 LDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRT 783
LDSHTCF+DVLSGNL+QRLLRPLR+D QRVLQFF+GRPSFVKLIKALDWQPITLEFPVR
Sbjct: 348 LDSHTCFQDVLSGNLLQRLLRPLRADFQRVLQFFQGRPSFVKLIKALDWQPITLEFPVRD 407
Query: 784 VNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTAETSTPTTIADSLEGSAENLAS 963
V T +RGPPGF NPFT+P PVNPEDADT R F++F+ T+ +LE +AE+
Sbjct: 408 VRTTVRGPPGFKNPFTQPQPVNPEDADTSRGFQDFTRATTPKLQPTVEATLEATAESSDH 467
Query: 964 HTSLKVGHADLSTEQLRALHELGSTRLGGPLLPRIAPDEQDSEXXXXXXXXXXXTKANTT 1143
HT LKV L +QL A+H LG R GGPLLP +E + A+
Sbjct: 468 HTQLKVLCDTLPEKQLEAIHALGHLRCGGPLLPAPTQSCSPAEPCPDLPPSPVKSTASPA 527
Query: 1144 LNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKA 1323
+ D P P TLPWVAWLPKLNALGFEALE+Q DPSTGE+IMPI D RDLP+A
Sbjct: 528 SPDPNVLDAQPTTQAPETLPWVAWLPKLNALGFEALEVQHDPSTGEMIMPITDTRDLPRA 587
Query: 1324 TLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKE 1503
TLP HW L +LTTLRSLNRFPTPW PDR RARAFTSDVKNSRTGKALHRE+Q WKE
Sbjct: 588 TLPPHWQGHDLESILTTLRSLNRFPTPWSPDRTRARAFTSDVKNSRTGKALHRESQAWKE 647
Query: 1504 TQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLP 1683
TQTMLTEN A+LAISVIHGAGGSGKSQALQTLLRQNP LPIEVVLPTNELRLDWLKKLP
Sbjct: 648 TQTMLTENTQADLAISVIHGAGGSGKSQALQTLLRQNPSLPIEVVLPTNELRLDWLKKLP 707
Query: 1684 HNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHH 1863
HNPPEQFRTFERAFV S SPVVIFDDYGKLPQGY+EAFA+THA+LEL ILTGDPRQSTHH
Sbjct: 708 HNPPEQFRTFERAFVSSHSPVVIFDDYGKLPQGYLEAFALTHANLELAILTGDPRQSTHH 767
Query: 1864 EANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQP 2043
E+NEEALISKL PATTI+S LSRYYINATHRNSK+LANKLGVYS+NSCPL VTYGFQP P
Sbjct: 768 ESNEEALISKLPPATTIYSTLSRYYINATHRNSKYLANKLGVYSANSCPLNVTYGFQPLP 827
Query: 2044 GMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAV 2223
GMHLLVPSL+KKAAFTD GHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAV
Sbjct: 828 GMHLLVPSLVKKAAFTDVGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAV 887
Query: 2224 DSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXXVE 2403
DSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EF A VE
Sbjct: 888 DSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKITEFQAPEDAPKPVTPPVTHFPVE 947
Query: 2404 DKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKAR 2583
+ TTLDDFKE L DKF+REIFT GHTNCVQ DDPT QLFSHQQAKDEALLWETIKAR
Sbjct: 948 EPATTLDDFKEELHDKFDREIFTSDRGHTNCVQTDDPTIQLFSHQQAKDEALLWETIKAR 1007
Query: 2584 LTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKS 2763
LTISTPEAN++EFRAKKDLGDILWANYH+AM LPKEQP+FSEDLWTRCAEEVQNTYLKKS
Sbjct: 1008 LTISTPEANIDEFRAKKDLGDILWANYHRAMGLPKEQPDFSEDLWTRCAEEVQNTYLKKS 1067
Query: 2764 ISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTM 2943
++Q+KGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTM
Sbjct: 1068 LAQLKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTM 1127
Query: 2944 ARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQF 3123
ARYMRRFRDAL PNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQF
Sbjct: 1128 ARYMRRFRDALGPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQF 1187
Query: 3124 EILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFE 3303
EILKAKYFNLPEWVIEGYLDIKLSPKIF+GTLSIMRLTGEGPTFDANTECNIAYTHTRF+
Sbjct: 1188 EILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLSIMRLTGEGPTFDANTECNIAYTHTRFD 1247
Query: 3304 IPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPK 3483
IPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPK
Sbjct: 1248 IPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPK 1307
Query: 3484 GLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSP 3648
GLIKDPLKLHASLELAKAQ+KAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP
Sbjct: 1308 GLIKDPLKLHASLELAKAQRKAGVKDAIANVVANYSLDAKLAYSLGDDLQDLLSP 1362
>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
Length = 1368
Score = 2053 bits (5319), Expect = 0.0
Identities = 1018/1216 (83%), Positives = 1079/1216 (88%)
Frame = +1
Query: 1 AHSPKLQTLYATLVLPPEALYRLRSLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYI 180
AHSPKLQTLYATLV LPPEALYRLRSLYPQIYTLTYSEDGFMYI
Sbjct: 164 AHSPKLQTLYATLV-----------------LPPEALYRLRSLYPQIYTLTYSEDGFMYI 206
Query: 181 PGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRT 360
PGGHAGASYFHKYDQLEWLT+GHL A NQPT+TAQRLETKGANHLFIFQRGNYLTPERRT
Sbjct: 207 PGGHAGASYFHKYDQLEWLTIGHLQAPNQPTVTAQRLETKGANHLFIFQRGNYLTPERRT 266
Query: 361 FTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKE 540
FTTT+ YVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKE
Sbjct: 267 FTTTDPYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKE 326
Query: 541 LQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPS 720
LQHYQPSEITLLVNYFEF ASLDSHTCFEDVLSGNL+QRLLRPLR+D+QR+L FFRGRPS
Sbjct: 327 LQHYQPSEITLLVNYFEFAASLDSHTCFEDVLSGNLLQRLLRPLRADMQRILHFFRGRPS 386
Query: 721 FVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTA 900
FVKLIKALDWQPITLEFPVR VNTRLRGPPGF +PFT+P PVNP+DA+T +FREF
Sbjct: 387 FVKLIKALDWQPITLEFPVRRVNTRLRGPPGFLSPFTRPQPVNPDDAETTESFREFIQPL 446
Query: 901 ETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGSTRLGGPLLPRIAPDE 1080
S T+ + LE S E+ +HTSLKV LS EQL ALHELG++R GGP+LP+ + +
Sbjct: 447 NPSPTATVTEMLENSTESDVTHTSLKVVPQSLSPEQLSALHELGNSRCGGPMLPKRSSNH 506
Query: 1081 QDSEXXXXXXXXXXXTKANTTLNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQ 1260
T ++ L + H Q + P + K +GFEALEIQ
Sbjct: 507 ---------------THTSSDLLRRRHPRQQRSTNPPMG----SLAAKAKRIGFEALEIQ 547
Query: 1261 TDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFT 1440
TDPSTG+ IMPI D R+LP+A +P HW+ P K++ TLR+LNRFPTPW PDRARARAFT
Sbjct: 548 TDPSTGQPIMPITDTRELPRAIMPAHWDSPQFEKIIATLRNLNRFPTPWSPDRARARAFT 607
Query: 1441 SDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPD 1620
SDVKNSRTGKALHRE+QTWKETQTMLT+N + AISVIHGAGGSGKSQALQTLLRQNPD
Sbjct: 608 SDVKNSRTGKALHRESQTWKETQTMLTDNAEIHTAISVIHGAGGSGKSQALQTLLRQNPD 667
Query: 1621 LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFA 1800
LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV S+ PVVIFDDYGKLPQGYIEAFA
Sbjct: 668 LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVSSRGPVVIFDDYGKLPQGYIEAFA 727
Query: 1801 MTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANK 1980
MTHA+LEL+ILTGDPRQSTHHEANEEALISKL+PATT FSELSRYYINATHRNSKFLANK
Sbjct: 728 MTHANLELIILTGDPRQSTHHEANEEALISKLSPATTTFSELSRYYINATHRNSKFLANK 787
Query: 1981 LGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQIL 2160
LG+YSSN CPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQIL
Sbjct: 788 LGIYSSNHCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQIL 847
Query: 2161 LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEE 2340
LDNDTTMCTKEVLYTALSRAVDS HFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEE
Sbjct: 848 LDNDTTMCTKEVLYTALSRAVDSNHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEE 907
Query: 2341 FSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTT 2520
FSA VE+ TT LDDF+E L DKF+REIFTEAHGHTNCVQ DDPTT
Sbjct: 908 FSAPPDPPKSVMPPVTHFPVEECTTALDDFREELHDKFDREIFTEAHGHTNCVQTDDPTT 967
Query: 2521 QLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPE 2700
QLFSHQQAKDEALLWETIKARLTISTPEAN+EEFRAKKDLGDILW NYHKAM LPKEQP+
Sbjct: 968 QLFSHQQAKDEALLWETIKARLTISTPEANIEEFRAKKDLGDILWTNYHKAMNLPKEQPD 1027
Query: 2701 FSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKK 2880
FSE+LWTRCAEEVQNTYLKKS++Q+KGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKK
Sbjct: 1028 FSEELWTRCAEEVQNTYLKKSLNQLKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKK 1087
Query: 2881 IKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSK 3060
IKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVL+YWDFSK
Sbjct: 1088 IKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLSYWDFSK 1147
Query: 3061 PSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTG 3240
P+YANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTG
Sbjct: 1148 PAYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTG 1207
Query: 3241 EGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKP 3420
EGPTFDANTECNIAYTHTRF IPEGTAQIYAGDDCAIAQVCPEKPSFALLK+RIALQAKP
Sbjct: 1208 EGPTFDANTECNIAYTHTRFNIPEGTAQIYAGDDCAIAQVCPEKPSFALLKDRIALQAKP 1267
Query: 3421 AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDA 3600
AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDA
Sbjct: 1268 AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDA 1327
Query: 3601 KLAYSLGDDLQDLLSP 3648
KLAYSLGD+L DLLSP
Sbjct: 1328 KLAYSLGDELHDLLSP 1343
>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 2039 bits (5283), Expect = 0.0
Identities = 1015/1216 (83%), Positives = 1067/1216 (87%)
Frame = +1
Query: 1 AHSPKLQTLYATLVLPPEALYRLRSLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYI 180
AHSPKLQTLYATLV LPPEALYRLRSLYPQIYTLTYSEDGFMYI
Sbjct: 164 AHSPKLQTLYATLV-----------------LPPEALYRLRSLYPQIYTLTYSEDGFMYI 206
Query: 181 PGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRT 360
PGGHAGASYFH Y QLEWLTVGHLT Q T+TAQRLETKGANHLFIFQRGNYLTPERRT
Sbjct: 207 PGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRT 266
Query: 361 FTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKE 540
FTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKE
Sbjct: 267 FTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKE 326
Query: 541 LQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPS 720
LQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPS
Sbjct: 327 LQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPS 386
Query: 721 FVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTA 900
FVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVNP+DA+T ++F+ F
Sbjct: 387 FVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQAT 446
Query: 901 ETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGSTRLGGPLLPRIAPDE 1080
T+ +L +E H SL + L QL ALHELG+ R GGPLLP+
Sbjct: 447 -----ATVEATLAQQSETPDEHQSLSLKCPTLPEHQLWALHELGNARCGGPLLPKGPAKL 501
Query: 1081 QDSEXXXXXXXXXXXTKANTTLNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQ 1260
+E ++ + P DP+TLPWVAWLPKLNALGFEALEIQ
Sbjct: 502 TRAEPCPDLPAEPQAVPEPP--HKTTQSSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQ 559
Query: 1261 TDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFT 1440
TDPSTGE+IMPI D R+LP+A HW P + ++L+TLRSLNR+PTPW PDRARA+AFT
Sbjct: 560 TDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRSLNRYPTPWNPDRARAKAFT 619
Query: 1441 SDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPD 1620
SDVKNSRTGKALHRE+Q WKETQTMLTEN NLAISVIHGAGGSGKSQALQTLLRQ P+
Sbjct: 620 SDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPN 679
Query: 1621 LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFA 1800
LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFA
Sbjct: 680 LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFA 739
Query: 1801 MTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANK 1980
MTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSKFLANK
Sbjct: 740 MTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANK 799
Query: 1981 LGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQIL 2160
LGVYSSNSCPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQIL
Sbjct: 800 LGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQIL 859
Query: 2161 LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEE 2340
LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEE
Sbjct: 860 LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEE 919
Query: 2341 FSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTT 2520
F+A VED TTTLDDFKE L DKF+REIF AHGHTNCVQ DDPTT
Sbjct: 920 FTAIPAEAKHVAPPCTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTT 979
Query: 2521 QLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPE 2700
QLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+
Sbjct: 980 QLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPD 1039
Query: 2701 FSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKK 2880
FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKK
Sbjct: 1040 FSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKK 1099
Query: 2881 IKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSK 3060
IKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLNYWDFSK
Sbjct: 1100 IKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNYWDFSK 1159
Query: 3061 PSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTG 3240
PSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTG
Sbjct: 1160 PSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTG 1219
Query: 3241 EGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKP 3420
EGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKP
Sbjct: 1220 EGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKP 1279
Query: 3421 AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDA 3600
AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDA
Sbjct: 1280 AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDA 1339
Query: 3601 KLAYSLGDDLQDLLSP 3648
KLAYSLGDDLQDLLSP
Sbjct: 1340 KLAYSLGDDLQDLLSP 1355
>emb|CEN56830.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 2036 bits (5275), Expect = 0.0
Identities = 1013/1217 (83%), Positives = 1072/1217 (88%), Gaps = 1/1217 (0%)
Frame = +1
Query: 1 AHSPKLQTLYATLVLPPEALYRLRSLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYI 180
AHSPKLQTLYATLV LPPEALYRLRSL+PQIYTLTYSEDGFMYI
Sbjct: 164 AHSPKLQTLYATLV-----------------LPPEALYRLRSLHPQIYTLTYSEDGFMYI 206
Query: 181 PGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRT 360
PGGHAGASYFHKY QLEWLTVGHLTA T+TAQRLETKGANHLFIFQRGNYLTPERRT
Sbjct: 207 PGGHAGASYFHKYSQLEWLTVGHLTAPGLLTVTAQRLETKGANHLFIFQRGNYLTPERRT 266
Query: 361 FTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKE 540
FTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKE
Sbjct: 267 FTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKE 326
Query: 541 LQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPS 720
LQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPL S ++L FFRGRPS
Sbjct: 327 LQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRILRPLTSGATQILNFFRGRPS 386
Query: 721 FVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTA 900
FVKLI+ALDWQPITLEFPVR VNT LRGPPGF +PFT+P PVNP+DA+T +F+ F A
Sbjct: 387 FVKLIQALDWQPITLEFPVRKVNTLLRGPPGFDSPFTRPQPVNPDDAETTHSFQAFCQAA 446
Query: 901 ETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGSTRLGGPLLPRIAPDE 1080
+ LE AE H SL++ LS QL ALHELG+ R GGPLLP+ PD
Sbjct: 447 -----AAVETILEQQAETPDEHQSLRLDCPTLSEHQLWALHELGNARCGGPLLPQ-RPDT 500
Query: 1081 QDSEXXXXXXXXXXXTKANTTLNQGD-HADQAPVNSDPATLPWVAWLPKLNALGFEALEI 1257
S T A +Q + A P DP TLPWVAWLPKLNALGFEALEI
Sbjct: 501 --STVVEPCPDLPPETHAAPEPSQRNTQAPNLPSPQDPTTLPWVAWLPKLNALGFEALEI 558
Query: 1258 QTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAF 1437
Q DPSTG +IMPI D ++LP+A P HW P + ++++TLRSLNR+PTPW PDR+RARAF
Sbjct: 559 QNDPSTGNMIMPITDTKELPRAIGPAHWQGPDMEQIISTLRSLNRYPTPWNPDRSRARAF 618
Query: 1438 TSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNP 1617
TSDVKNSRTGKALHRE+Q WKETQTMLTE+ NLAISVIHGAGGSGKSQALQTLLRQ+P
Sbjct: 619 TSDVKNSRTGKALHRESQVWKETQTMLTESTQTNLAISVIHGAGGSGKSQALQTLLRQHP 678
Query: 1618 DLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAF 1797
LP+EVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAF
Sbjct: 679 SLPVEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAF 738
Query: 1798 AMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLAN 1977
AMTHASLELVILTGDPRQSTHHEANEEALISKL PATTIFSELSRYYINATHRNSKFLAN
Sbjct: 739 AMTHASLELVILTGDPRQSTHHEANEEALISKLPPATTIFSELSRYYINATHRNSKFLAN 798
Query: 1978 KLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQI 2157
KLGVYSSNSCPLKVTYG QPQPG+HLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQI
Sbjct: 799 KLGVYSSNSCPLKVTYGSQPQPGLHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQI 858
Query: 2158 LLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIE 2337
LLDNDTTMCTKEVLYTALSRAVDSIHF+NSNAQSSAFWEKLEATPYLKTFLSLVRED++
Sbjct: 859 LLDNDTTMCTKEVLYTALSRAVDSIHFINSNAQSSAFWEKLEATPYLKTFLSLVREDRVA 918
Query: 2338 EFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPT 2517
EFSA VED TTTLDDF+E L DKF+REIF +AHGHTNCVQ D+PT
Sbjct: 919 EFSASPADPTPVAPPCTHFPVEDGTTTLDDFREELQDKFDREIFNQAHGHTNCVQTDNPT 978
Query: 2518 TQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQP 2697
TQLF+HQQAKDEALLWETI ARLTIS+PEANL EFRAKKDLGDILW NY KAMKLP EQP
Sbjct: 979 TQLFAHQQAKDEALLWETINARLTISSPEANLAEFRAKKDLGDILWENYRKAMKLPNEQP 1038
Query: 2698 EFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAK 2877
+FSEDLWTRCAEEVQNTYLKKS++QIKGG+RRQSPDFHEHQILIFLKSQWVKKMEKLGAK
Sbjct: 1039 DFSEDLWTRCAEEVQNTYLKKSVAQIKGGDRRQSPDFHEHQILIFLKSQWVKKMEKLGAK 1098
Query: 2878 KIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFS 3057
KIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN+WDFS
Sbjct: 1099 KIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNHWDFS 1158
Query: 3058 KPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLT 3237
KPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTL+IMRLT
Sbjct: 1159 KPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLTIMRLT 1218
Query: 3238 GEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAK 3417
GEGPTFDANTECNIAYTHTRF+IPEG AQIYAGDDCAI+QVCPEKPSF+LLKNRIALQAK
Sbjct: 1219 GEGPTFDANTECNIAYTHTRFDIPEGAAQIYAGDDCAISQVCPEKPSFSLLKNRIALQAK 1278
Query: 3418 PAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLD 3597
PAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLD
Sbjct: 1279 PAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLD 1338
Query: 3598 AKLAYSLGDDLQDLLSP 3648
AKLAYSLGDDLQDLLSP
Sbjct: 1339 AKLAYSLGDDLQDLLSP 1355
>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 2035 bits (5273), Expect = 0.0
Identities = 1013/1216 (83%), Positives = 1066/1216 (87%)
Frame = +1
Query: 1 AHSPKLQTLYATLVLPPEALYRLRSLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYI 180
AHSPKLQTLYATLV LPPEALYRLRSLYPQIYTLTYSEDGFMYI
Sbjct: 164 AHSPKLQTLYATLV-----------------LPPEALYRLRSLYPQIYTLTYSEDGFMYI 206
Query: 181 PGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRT 360
PGGHAGASYFH Y QLEWLTVGHLT Q T+TAQRLETKGANHLFIFQRGNYLTPERRT
Sbjct: 207 PGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRT 266
Query: 361 FTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKE 540
FTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKE
Sbjct: 267 FTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKE 326
Query: 541 LQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPS 720
LQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPS
Sbjct: 327 LQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPS 386
Query: 721 FVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTA 900
FVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVNP+DA+T ++F+ F
Sbjct: 387 FVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQAT 446
Query: 901 ETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGSTRLGGPLLPRIAPDE 1080
T+ +L +E H SL + + L QL ALHELG+ R GGPLLP+
Sbjct: 447 -----ATVEXTLAQQSETPDEHQSLSLKCSTLPEHQLWALHELGNARCGGPLLPKGPAKL 501
Query: 1081 QDSEXXXXXXXXXXXTKANTTLNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQ 1260
+E ++ + P DP+TLPWVAWLPKLNALGFEALEIQ
Sbjct: 502 TRAEPCPDLPAEPQAVPEPP--HKTTQSSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQ 559
Query: 1261 TDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFT 1440
TDPSTGE+IMPI D R+LP+A HW P + ++L+TLR LNR+PTPW PDRARA+AFT
Sbjct: 560 TDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRGLNRYPTPWNPDRARAKAFT 619
Query: 1441 SDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPD 1620
SDVKNSRTGKALHRE+Q WKETQTMLTEN NLAISVIHGAGGSGKSQALQTLLRQ P+
Sbjct: 620 SDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPN 679
Query: 1621 LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFA 1800
LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFA
Sbjct: 680 LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFA 739
Query: 1801 MTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANK 1980
MTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSKFLANK
Sbjct: 740 MTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANK 799
Query: 1981 LGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQIL 2160
LGVYSSNSCPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQIL
Sbjct: 800 LGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQIL 859
Query: 2161 LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEE 2340
LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEE
Sbjct: 860 LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEE 919
Query: 2341 FSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTT 2520
F+A VED TTTLDDFKE L DKF+REIF AHGHTNCVQ DDPTT
Sbjct: 920 FTAIPAEAKRVAPPCTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTT 979
Query: 2521 QLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPE 2700
QLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+
Sbjct: 980 QLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPD 1039
Query: 2701 FSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKK 2880
FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKK
Sbjct: 1040 FSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKK 1099
Query: 2881 IKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSK 3060
IKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN WDFSK
Sbjct: 1100 IKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNCWDFSK 1159
Query: 3061 PSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTG 3240
PSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTG
Sbjct: 1160 PSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTG 1219
Query: 3241 EGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKP 3420
EGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKP
Sbjct: 1220 EGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKP 1279
Query: 3421 AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDA 3600
AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDA
Sbjct: 1280 AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDA 1339
Query: 3601 KLAYSLGDDLQDLLSP 3648
KLAYSLGDDLQDLLSP
Sbjct: 1340 KLAYSLGDDLQDLLSP 1355
>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 2035 bits (5272), Expect = 0.0
Identities = 1013/1216 (83%), Positives = 1066/1216 (87%)
Frame = +1
Query: 1 AHSPKLQTLYATLVLPPEALYRLRSLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYI 180
AHSPKLQTLYATLV LPPEALYRLRSLYPQIYTLTYSEDGFMYI
Sbjct: 164 AHSPKLQTLYATLV-----------------LPPEALYRLRSLYPQIYTLTYSEDGFMYI 206
Query: 181 PGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRT 360
PGGHAGASYFH Y QLEWLTVGHLT Q T+TAQRLETKGANHLFIFQRGNYLTPERRT
Sbjct: 207 PGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRT 266
Query: 361 FTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKE 540
FTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKE
Sbjct: 267 FTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKE 326
Query: 541 LQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPS 720
LQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPS
Sbjct: 327 LQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPS 386
Query: 721 FVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTA 900
FVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVNP+DA+T ++F+ F
Sbjct: 387 FVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQAT 446
Query: 901 ETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGSTRLGGPLLPRIAPDE 1080
T+ +L +E H SL + + L QL ALHELG+ R GGPLLP+
Sbjct: 447 -----ATVEATLAQQSETPDEHQSLSLKCSTLPEHQLWALHELGNARCGGPLLPKGPAKL 501
Query: 1081 QDSEXXXXXXXXXXXTKANTTLNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQ 1260
+E ++ + P DP+TLPWVAWLPKLNALGFEALEIQ
Sbjct: 502 TRAEPCPDLPAEPQAVPEPP--HKTTQSSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQ 559
Query: 1261 TDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFT 1440
TDPSTGE+IMPI D R+LP+A HW P + ++L+TLR LNR+PTPW PDRARA+AFT
Sbjct: 560 TDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRGLNRYPTPWNPDRARAKAFT 619
Query: 1441 SDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPD 1620
SDVKNSRTGKALHRE+Q WKETQTMLTEN NLAISVIHGAGGSGKSQALQTLLRQ P+
Sbjct: 620 SDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPN 679
Query: 1621 LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFA 1800
LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFA
Sbjct: 680 LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFA 739
Query: 1801 MTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANK 1980
MTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSKFLANK
Sbjct: 740 MTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANK 799
Query: 1981 LGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQIL 2160
LGVYSSNSCPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQIL
Sbjct: 800 LGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQIL 859
Query: 2161 LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEE 2340
LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEE
Sbjct: 860 LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEE 919
Query: 2341 FSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTT 2520
F+A VED TTTLDDFKE L DKF+REIF AHGHTNCVQ DDPTT
Sbjct: 920 FTAIPAEAKRVAPPCTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTT 979
Query: 2521 QLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPE 2700
QLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+
Sbjct: 980 QLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPD 1039
Query: 2701 FSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKK 2880
FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKK
Sbjct: 1040 FSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKK 1099
Query: 2881 IKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSK 3060
IKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN WDFSK
Sbjct: 1100 IKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNCWDFSK 1159
Query: 3061 PSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTG 3240
PSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTG
Sbjct: 1160 PSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTG 1219
Query: 3241 EGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKP 3420
EGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKP
Sbjct: 1220 EGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKP 1279
Query: 3421 AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDA 3600
AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDA
Sbjct: 1280 AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDA 1339
Query: 3601 KLAYSLGDDLQDLLSP 3648
KLAYSLGDDLQDLLSP
Sbjct: 1340 KLAYSLGDDLQDLLSP 1355
>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 2034 bits (5269), Expect = 0.0
Identities = 1013/1216 (83%), Positives = 1065/1216 (87%)
Frame = +1
Query: 1 AHSPKLQTLYATLVLPPEALYRLRSLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYI 180
AHSPKLQTLYATLV LPPEALYRLRSLYPQIYTLTYSEDGFMYI
Sbjct: 164 AHSPKLQTLYATLV-----------------LPPEALYRLRSLYPQIYTLTYSEDGFMYI 206
Query: 181 PGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRT 360
PGGHAGASYFHKY QLEWLTVGHLT Q T+TAQRLETKGANHLFIFQRGNYLTPERRT
Sbjct: 207 PGGHAGASYFHKYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRT 266
Query: 361 FTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKE 540
FTTTEHYVTVPD+FLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKE
Sbjct: 267 FTTTEHYVTVPDVFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKE 326
Query: 541 LQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPS 720
LQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPL+S I ++L FFRGRPS
Sbjct: 327 LQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLKSGITQLLNFFRGRPS 386
Query: 721 FVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTA 900
FVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVNP+DA+T ++F+ F
Sbjct: 387 FVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQAT 446
Query: 901 ETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGSTRLGGPLLPRIAPDE 1080
T+ +LE AE H SL + L QL ALHELG+TR GGPLLP+ P +
Sbjct: 447 ITAEA-----ALEQQAETPDEHQSLSLKCPTLPEHQLWALHELGNTRCGGPLLPK-GPAK 500
Query: 1081 QDSEXXXXXXXXXXXTKANTTLNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQ 1260
+ D P DP TLPWVAWLPKLNALGFEALEIQ
Sbjct: 501 LTTVEPCPDLPAENSANPEPPRKTTQTLD-LPHPEDPTTLPWVAWLPKLNALGFEALEIQ 559
Query: 1261 TDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFT 1440
TDPSTGE+IMPI D R+LP+A HW P + ++++TLRS NR+PTPW PDR+RA+AFT
Sbjct: 560 TDPSTGEMIMPITDTRELPRAEGHAHWQGPDMERIISTLRSFNRYPTPWNPDRSRAKAFT 619
Query: 1441 SDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPD 1620
SDVKNSRTGKALHRE+Q WKETQTML EN NLAISVIHGAGGSGKSQALQTLLRQ P+
Sbjct: 620 SDVKNSRTGKALHRESQVWKETQTMLAENSQTNLAISVIHGAGGSGKSQALQTLLRQYPN 679
Query: 1621 LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFA 1800
LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFA
Sbjct: 680 LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFA 739
Query: 1801 MTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANK 1980
+THASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSKFLANK
Sbjct: 740 LTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANK 799
Query: 1981 LGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQIL 2160
LGVYSSN CPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQIL
Sbjct: 800 LGVYSSNPCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQIL 859
Query: 2161 LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEE 2340
LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEE
Sbjct: 860 LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEE 919
Query: 2341 FSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTT 2520
F+A VED TTTLDDFKE L DKF+REIF HGHTNCVQ DDPTT
Sbjct: 920 FTATTAEAKPVAPPCTHFPVEDGTTTLDDFKEELHDKFDREIFNPTHGHTNCVQTDDPTT 979
Query: 2521 QLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPE 2700
QLFSHQQAKDEALLWETI ARLTIS PEANL EFRAKKDLGDILW NY KAMKLP EQP+
Sbjct: 980 QLFSHQQAKDEALLWETINARLTISNPEANLAEFRAKKDLGDILWENYRKAMKLPNEQPD 1039
Query: 2701 FSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKK 2880
FSEDLW RCAEEVQNTYLKKS++QIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKK
Sbjct: 1040 FSEDLWIRCAEEVQNTYLKKSVAQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKK 1099
Query: 2881 IKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSK 3060
IKPGQTIASFQQHAVMLYGTMARYMRRFR+ALSPNNIMINCEKTPQDLSRWVLNYWDFSK
Sbjct: 1100 IKPGQTIASFQQHAVMLYGTMARYMRRFREALSPNNIMINCEKTPQDLSRWVLNYWDFSK 1159
Query: 3061 PSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTG 3240
PSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTL+IMRLTG
Sbjct: 1160 PSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLTIMRLTG 1219
Query: 3241 EGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKP 3420
EGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKP
Sbjct: 1220 EGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKP 1279
Query: 3421 AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDA 3600
AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDA
Sbjct: 1280 AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDA 1339
Query: 3601 KLAYSLGDDLQDLLSP 3648
KLAYSLGDDLQDLLSP
Sbjct: 1340 KLAYSLGDDLQDLLSP 1355
>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 2034 bits (5269), Expect = 0.0
Identities = 1012/1216 (83%), Positives = 1065/1216 (87%)
Frame = +1
Query: 1 AHSPKLQTLYATLVLPPEALYRLRSLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYI 180
AHSPKLQTLYATLV LPPEALYRLRSLYPQIYTLTYSEDGFMYI
Sbjct: 164 AHSPKLQTLYATLV-----------------LPPEALYRLRSLYPQIYTLTYSEDGFMYI 206
Query: 181 PGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRT 360
PGGHAGASYFH Y QLEWLTVGHLT Q T+TAQRLETKGANHLFIFQRGNYLTPERRT
Sbjct: 207 PGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRT 266
Query: 361 FTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKE 540
FTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKE
Sbjct: 267 FTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKE 326
Query: 541 LQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPS 720
LQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPS
Sbjct: 327 LQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPS 386
Query: 721 FVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTA 900
FVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVNP+DA+T ++F+ F
Sbjct: 387 FVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQAT 446
Query: 901 ETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGSTRLGGPLLPRIAPDE 1080
T+ +L +E H SL + L QL ALHELG+ R GGPLLP+
Sbjct: 447 -----ATVEATLAQQSETPDEHQSLSLKCPTLPEHQLWALHELGNARCGGPLLPKGPAKL 501
Query: 1081 QDSEXXXXXXXXXXXTKANTTLNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQ 1260
+E ++ + P DP+TLPWVAWLPKLNALGFEALEIQ
Sbjct: 502 TRAEPCPDLPAEPQAVPEPP--HKTTQSSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQ 559
Query: 1261 TDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFT 1440
TDPSTGE+IMPI D R+LP+A HW P + ++L+TLRSLNR+PTPW PDRARA+AFT
Sbjct: 560 TDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRSLNRYPTPWNPDRARAKAFT 619
Query: 1441 SDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPD 1620
SDVKNSRTGKALHRE+Q WKETQTMLTEN NLAISVIHGAGGSGKSQALQTLLRQ P+
Sbjct: 620 SDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPN 679
Query: 1621 LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFA 1800
LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFA
Sbjct: 680 LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFA 739
Query: 1801 MTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANK 1980
MTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSK LANK
Sbjct: 740 MTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKLLANK 799
Query: 1981 LGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQIL 2160
LGVYSSNSCPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQIL
Sbjct: 800 LGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQIL 859
Query: 2161 LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEE 2340
LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEE
Sbjct: 860 LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEE 919
Query: 2341 FSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTT 2520
F+A VED TTTLDDFKE L DKF+REIF AHGHTNCVQ DDPTT
Sbjct: 920 FTAIPAEAKHVAPPCTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTT 979
Query: 2521 QLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPE 2700
QLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+
Sbjct: 980 QLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPD 1039
Query: 2701 FSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKK 2880
FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFHEH ILIFLKSQWVKKMEKLGAKK
Sbjct: 1040 FSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHHILIFLKSQWVKKMEKLGAKK 1099
Query: 2881 IKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSK 3060
IKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCE+TPQDLSRWVLNYWDFSK
Sbjct: 1100 IKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCERTPQDLSRWVLNYWDFSK 1159
Query: 3061 PSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTG 3240
PSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTG
Sbjct: 1160 PSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTG 1219
Query: 3241 EGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKP 3420
EGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKP
Sbjct: 1220 EGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKP 1279
Query: 3421 AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDA 3600
AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDA
Sbjct: 1280 AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDA 1339
Query: 3601 KLAYSLGDDLQDLLSP 3648
KLAYSLGDDLQDLLSP
Sbjct: 1340 KLAYSLGDDLQDLLSP 1355
>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 2033 bits (5266), Expect = 0.0
Identities = 1012/1216 (83%), Positives = 1065/1216 (87%)
Frame = +1
Query: 1 AHSPKLQTLYATLVLPPEALYRLRSLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYI 180
AHSPKLQTLYATLV LPPEALYRLRSLYPQIYTLTYSEDGFMYI
Sbjct: 164 AHSPKLQTLYATLV-----------------LPPEALYRLRSLYPQIYTLTYSEDGFMYI 206
Query: 181 PGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRT 360
PGGHAGASYFH Y QLEWLTVGHLT Q T+TAQRLETKGANHLFIFQRGNYLTPERRT
Sbjct: 207 PGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRT 266
Query: 361 FTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKE 540
FTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKE
Sbjct: 267 FTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKE 326
Query: 541 LQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPS 720
LQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPS
Sbjct: 327 LQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPS 386
Query: 721 FVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTA 900
FVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVNP+DA+T ++F+ F
Sbjct: 387 FVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQAT 446
Query: 901 ETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGSTRLGGPLLPRIAPDE 1080
T+ +L +E H SL + + L QL ALHELG+ R G PLLP+
Sbjct: 447 -----ATVEATLAQQSETPDEHQSLSLKCSTLPEHQLWALHELGNARCGAPLLPKGPAKL 501
Query: 1081 QDSEXXXXXXXXXXXTKANTTLNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQ 1260
+E ++ + P DP+TLPWVAWLPKLNALGFEALEIQ
Sbjct: 502 TRAEPCPDLPAEPQAVPEPP--HKTTQSSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQ 559
Query: 1261 TDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFT 1440
TDPSTGE+IMPI D R+LP+A HW P + ++L+TLR LNR+PTPW PDRARA+AFT
Sbjct: 560 TDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRGLNRYPTPWNPDRARAKAFT 619
Query: 1441 SDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPD 1620
SDVKNSRTGKALHRE+Q WKETQTMLTEN NLAISVIHGAGGSGKSQALQTLLRQ P+
Sbjct: 620 SDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPN 679
Query: 1621 LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFA 1800
LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFA
Sbjct: 680 LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFA 739
Query: 1801 MTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANK 1980
MTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSKFLANK
Sbjct: 740 MTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANK 799
Query: 1981 LGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQIL 2160
LGVYSSNSCPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQIL
Sbjct: 800 LGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQIL 859
Query: 2161 LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEE 2340
LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEE
Sbjct: 860 LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEE 919
Query: 2341 FSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTT 2520
F+A VED TTTLDDFKE L DKF+REIF AHGHTNCVQ DDPTT
Sbjct: 920 FTAIPAEAKRVAPPCTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTT 979
Query: 2521 QLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPE 2700
QLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+
Sbjct: 980 QLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPD 1039
Query: 2701 FSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKK 2880
FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKK
Sbjct: 1040 FSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKK 1099
Query: 2881 IKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSK 3060
IKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN WDFSK
Sbjct: 1100 IKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNCWDFSK 1159
Query: 3061 PSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTG 3240
PSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTG
Sbjct: 1160 PSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTG 1219
Query: 3241 EGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKP 3420
EGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKP
Sbjct: 1220 EGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKP 1279
Query: 3421 AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDA 3600
AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDA
Sbjct: 1280 AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDA 1339
Query: 3601 KLAYSLGDDLQDLLSP 3648
KLAYSLGDDLQDLLSP
Sbjct: 1340 KLAYSLGDDLQDLLSP 1355
>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 2029 bits (5257), Expect = 0.0
Identities = 1010/1216 (83%), Positives = 1064/1216 (87%)
Frame = +1
Query: 1 AHSPKLQTLYATLVLPPEALYRLRSLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYI 180
AHSPKLQTLYATLV LPPEALYRLRSLYPQIYTLTYSEDGFMYI
Sbjct: 164 AHSPKLQTLYATLV-----------------LPPEALYRLRSLYPQIYTLTYSEDGFMYI 206
Query: 181 PGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRT 360
PGGHAGASYFH Y QLEWLTVGHLT Q T+TAQRLETKGANHLFIFQRGNYLTPERRT
Sbjct: 207 PGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRT 266
Query: 361 FTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKE 540
FTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKE
Sbjct: 267 FTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKE 326
Query: 541 LQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPS 720
LQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPS
Sbjct: 327 LQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPS 386
Query: 721 FVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTA 900
FVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVNP+DA+T ++F+ F
Sbjct: 387 FVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQAT 446
Query: 901 ETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGSTRLGGPLLPRIAPDE 1080
T+ +L +E H SL + L QL ALHELG+ R GGPLLP+
Sbjct: 447 -----ATVEATLAQQSETPDEHQSLSLKCPTLPEHQLWALHELGNARCGGPLLPKGPAKL 501
Query: 1081 QDSEXXXXXXXXXXXTKANTTLNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQ 1260
+E ++ + P DP+TLPWVAWLPKLNALGFEALEIQ
Sbjct: 502 TRAEPCPDLPAEPQAVPEPP--HKTTQSSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQ 559
Query: 1261 TDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFT 1440
TDPSTGE+IMPI D R+LP+A HW P ++++L+TLRSLNR+PTPW PDRARA+AFT
Sbjct: 560 TDPSTGEMIMPITDTRELPRADGHAHWQGPDMARILSTLRSLNRYPTPWNPDRARAKAFT 619
Query: 1441 SDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPD 1620
SDVKNSRTGKALHRE+Q WKETQ MLTEN NLAISVIHGAGGSGKSQALQTLLRQ P+
Sbjct: 620 SDVKNSRTGKALHRESQVWKETQAMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPN 679
Query: 1621 LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFA 1800
LPIEVVLPTNELRLDW KKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFA
Sbjct: 680 LPIEVVLPTNELRLDWPKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFA 739
Query: 1801 MTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANK 1980
MTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSKFLANK
Sbjct: 740 MTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANK 799
Query: 1981 LGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQIL 2160
LGVYSSNSCPLKVTYGFQP+PG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQIL
Sbjct: 800 LGVYSSNSCPLKVTYGFQPRPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQIL 859
Query: 2161 LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEE 2340
LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEE
Sbjct: 860 LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEE 919
Query: 2341 FSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTT 2520
F+A VED TTTLDDFKE L DKF+REIF AHGHTNCVQ DDPTT
Sbjct: 920 FTAIPAEAKHVAPPCTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTT 979
Query: 2521 QLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPE 2700
QLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+
Sbjct: 980 QLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPD 1039
Query: 2701 FSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKK 2880
FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKK
Sbjct: 1040 FSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKK 1099
Query: 2881 IKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSK 3060
IKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLNYWDFSK
Sbjct: 1100 IKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNYWDFSK 1159
Query: 3061 PSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTG 3240
PSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTG
Sbjct: 1160 PSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTG 1219
Query: 3241 EGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKP 3420
EGP FDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKP
Sbjct: 1220 EGPAFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKP 1279
Query: 3421 AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDA 3600
AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ NYSLDA
Sbjct: 1280 AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVDNYSLDA 1339
Query: 3601 KLAYSLGDDLQDLLSP 3648
KLAYSLGDDLQDLLSP
Sbjct: 1340 KLAYSLGDDLQDLLSP 1355
>gb|AMD78101.1| RdRP [Plantago asiatica mosaic virus]
Length = 1380
Score = 2027 bits (5252), Expect = 0.0
Identities = 1008/1221 (82%), Positives = 1069/1221 (87%), Gaps = 5/1221 (0%)
Frame = +1
Query: 1 AHSPKLQTLYATLVLPPEALYRLRSLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYI 180
AHSPKLQTLYATLV LPPEALYRLRSL+PQIYTLTYSEDGFMYI
Sbjct: 164 AHSPKLQTLYATLV-----------------LPPEALYRLRSLHPQIYTLTYSEDGFMYI 206
Query: 181 PGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRT 360
PGGHAGASYFHKY QLEWLTVGHLTA T+TAQRLETKGANHLFIFQRGNYLTPERRT
Sbjct: 207 PGGHAGASYFHKYSQLEWLTVGHLTAPGLLTVTAQRLETKGANHLFIFQRGNYLTPERRT 266
Query: 361 FTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKE 540
FTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKE
Sbjct: 267 FTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKE 326
Query: 541 LQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPS 720
LQHYQPSE TLLVNYFE TASLDSHTCFED+LSGNL+QR+LRPL S ++L FFRGRPS
Sbjct: 327 LQHYQPSETTLLVNYFELTASLDSHTCFEDILSGNLLQRILRPLTSGATQILNFFRGRPS 386
Query: 721 FVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTA 900
FVKLI+ALDWQPITLEFPVR V+T LRGPP F +PFT+P PVNP+DA+T F+ F A
Sbjct: 387 FVKLIQALDWQPITLEFPVRKVHTLLRGPPWFDSPFTRPQPVNPDDAETTHIFQAFCQAA 446
Query: 901 ETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGSTRLGGPLLPRIAPD- 1077
+ LE AE H SL++ LS QL +LHELG+ R GGPLLP+ PD
Sbjct: 447 -----AAVETILEQQAETPEEHQSLRLDCPTLSEHQLWSLHELGNARCGGPLLPQ-RPDT 500
Query: 1078 ----EQDSEXXXXXXXXXXXTKANTTLNQGDHADQAPVNSDPATLPWVAWLPKLNALGFE 1245
E + ++ NT A P DP TLPWVAWLPKLNALGFE
Sbjct: 501 ATVVEPCPDLPPETHAAPEPSQRNT------QAPNLPSPQDPTTLPWVAWLPKLNALGFE 554
Query: 1246 ALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRAR 1425
ALEIQ DPSTG +IMPI D ++LP+A P HW +P + ++++TLRSLNR+PTPW PDR+R
Sbjct: 555 ALEIQNDPSTGNMIMPITDTKELPRAIGPAHWQDPDMEQIISTLRSLNRYPTPWNPDRSR 614
Query: 1426 ARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLL 1605
ARAFTSDVKNSRTGKALHRE+Q WKETQTMLTE+ NLAISVIHGAGGSGKSQALQTLL
Sbjct: 615 ARAFTSDVKNSRTGKALHRESQVWKETQTMLTESTQTNLAISVIHGAGGSGKSQALQTLL 674
Query: 1606 RQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGY 1785
RQ+P LP+EVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY
Sbjct: 675 RQHPSLPVEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGY 734
Query: 1786 IEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSK 1965
+EAFAMTHASLELVILTGDPRQSTHHEANEEALISKL PATTIFSELSRYYINATHRNSK
Sbjct: 735 LEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLPPATTIFSELSRYYINATHRNSK 794
Query: 1966 FLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAP 2145
FLANKLGVYSSNSCPLKVTYG QPQPG+HLLVPSLMKKAAFTDAGHKVSTYAGCQGITAP
Sbjct: 795 FLANKLGVYSSNSCPLKVTYGSQPQPGLHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAP 854
Query: 2146 RVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVRE 2325
RVQILLDNDTTMCTKEVLYTALSRAVDSIHF+NSNAQSSAFWEKLEATPYLKTFLSLVRE
Sbjct: 855 RVQILLDNDTTMCTKEVLYTALSRAVDSIHFINSNAQSSAFWEKLEATPYLKTFLSLVRE 914
Query: 2326 DKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQG 2505
DK+ EFSA VED TTTLDDF+E L DKF+REIF +AHGHTNCVQ
Sbjct: 915 DKVAEFSASPADPTPVAPPCTHFPVEDGTTTLDDFREELQDKFDREIFNQAHGHTNCVQT 974
Query: 2506 DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLP 2685
D+PTTQLF+HQQAKDEALLWETI ARLTIS+PEANL EFRAKKDLGDILW NY KAMKLP
Sbjct: 975 DNPTTQLFAHQQAKDEALLWETINARLTISSPEANLAEFRAKKDLGDILWENYRKAMKLP 1034
Query: 2686 KEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK 2865
EQP+FSEDLWTRCAEEVQNTYLKKS++QIKGG+RRQSPDFHEHQILIFLKSQWVKKMEK
Sbjct: 1035 NEQPDFSEDLWTRCAEEVQNTYLKKSVAQIKGGDRRQSPDFHEHQILIFLKSQWVKKMEK 1094
Query: 2866 LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNY 3045
LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN+
Sbjct: 1095 LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNH 1154
Query: 3046 WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSI 3225
WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTL+I
Sbjct: 1155 WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLTI 1214
Query: 3226 MRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIA 3405
MRLTGEGPTFDANTECNIAYTHTRF+IPEG AQIYAGDDCAI+QVCPEKPSF+LLKNRIA
Sbjct: 1215 MRLTGEGPTFDANTECNIAYTHTRFDIPEGAAQIYAGDDCAISQVCPEKPSFSLLKNRIA 1274
Query: 3406 LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIAN 3585
LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+AN
Sbjct: 1275 LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVAN 1334
Query: 3586 YSLDAKLAYSLGDDLQDLLSP 3648
YSLDAKLAYSLGDDLQDLLSP
Sbjct: 1335 YSLDAKLAYSLGDDLQDLLSP 1355
>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
replication protein; AltName: Full=156 kDa protein;
AltName: Full=ORF1 protein; Includes: RecName:
Full=RNA-directed RNA polymerase; Includes: RecName:
Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
[Plantago asiatica mosaic virus]
Length = 1385
Score = 1963 bits (5085), Expect = 0.0
Identities = 979/1216 (80%), Positives = 1042/1216 (85%)
Frame = +1
Query: 1 AHSPKLQTLYATLVLPPEALYRLRSLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYI 180
AHSP+LQTLYATLVLPPE P + RSLYPQIYTLTYSEDGFMYI
Sbjct: 164 AHSPRLQTLYATLVLPPE--------------PSTS----RSLYPQIYTLTYSEDGFMYI 205
Query: 181 PGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRT 360
PGGHAGASYFHKYDQLEWLTVGHLTA PT+TAQRLETKGANHLFIFQRGNY+TPERRT
Sbjct: 206 PGGHAGASYFHKYDQLEWLTVGHLTAPGCPTVTAQRLETKGANHLFIFQRGNYITPERRT 265
Query: 361 FTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKE 540
F T + YVTVP IFLPE YNCRTPISKT MMQMFFYIKS KEA+ + +QLISTKE
Sbjct: 266 FATNDQYVTVPHIFLPENYNCRTPISKTTMMQMFFYIKSGKEAQREGHLGQVQQLISTKE 325
Query: 541 LQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPS 720
LQHYQPSEITLLVNYFEFTA+LDSHTCFEDV L + I R+LQFFRGRPS
Sbjct: 326 LQHYQPSEITLLVNYFEFTATLDSHTCFEDV-PPKLAPKTTPAPPLGISRILQFFRGRPS 384
Query: 721 FVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTA 900
FVKLIKALDWQPITLEFPVR V T +RGPPGF NPFT+P PVNPEDAD F++FS
Sbjct: 385 FVKLIKALDWQPITLEFPVRDVRTTVRGPPGFKNPFTQPQPVNPEDADISSRFQDFSRAT 444
Query: 901 ETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGSTRLGGPLLPRIAPDE 1080
++ T+ LE SAE+ HT LKV + LS QL A+H LG +R GGPLLP +
Sbjct: 445 NSTPKPTVEAVLEASAESPDHHTQLKVLCSALSEGQLEAIHALGHSRCGGPLLPELTAKS 504
Query: 1081 QDSEXXXXXXXXXXXTKANTTLNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQ 1260
E ++A+ + D P +P TLPWVAWLPKLNALGFEALE+Q
Sbjct: 505 TPVEQCPDLPPCPTKSQASPASSNPSGPDAQPTAQNPETLPWVAWLPKLNALGFEALEVQ 564
Query: 1261 TDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFT 1440
DPSTGE+IMPI D ++LP+ATLP HW L ++L+TLRSLNRFPTPW PDR RARAFT
Sbjct: 565 HDPSTGEMIMPITDTQELPRATLPAHWQGHNLERILSTLRSLNRFPTPWSPDRTRARAFT 624
Query: 1441 SDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPD 1620
SDVKNSRTGKALHRE+QTWKETQTMLTEN LAISVIHGAGGSGKSQALQTLLRQ+
Sbjct: 625 SDVKNSRTGKALHRESQTWKETQTMLTENTQTELAISVIHGAGGSGKSQALQTLLRQDHS 684
Query: 1621 LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFA 1800
LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV S SPVVIFDDYGKLPQGY+EAFA
Sbjct: 685 LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVSSHSPVVIFDDYGKLPQGYLEAFA 744
Query: 1801 MTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANK 1980
+THA+LELVILTGDPRQSTHHE+NEEALISKL PATTI+S SRYYINAT RNSKFLANK
Sbjct: 745 LTHANLELVILTGDPRQSTHHESNEEALISKLPPATTIYSAFSRYYINATLRNSKFLANK 804
Query: 1981 LGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQIL 2160
LGVYS+NSCPL VTYGFQP PG+HLLVPSLMKKAAFTDAGHKVS+YAGCQGITAP+VQIL
Sbjct: 805 LGVYSANSCPLNVTYGFQPLPGLHLLVPSLMKKAAFTDAGHKVSSYAGCQGITAPKVQIL 864
Query: 2161 LDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEE 2340
LDNDTTMCTKEVLYTALSRAVDSIHFVN+NAQSSAFWEKLEATPYLKTFLSLVREDKI E
Sbjct: 865 LDNDTTMCTKEVLYTALSRAVDSIHFVNTNAQSSAFWEKLEATPYLKTFLSLVREDKITE 924
Query: 2341 FSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTT 2520
F A VE+ TTLDDFKE L DKF+REIFT GHTNCVQ DDPTT
Sbjct: 925 FQAPADAPKPVTPPVTHFPVEEPATTLDDFKEELRDKFDREIFTSDRGHTNCVQTDDPTT 984
Query: 2521 QLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPE 2700
QLFSHQQAKDEALLWE I+ARL ISTPEAN+EEFRAKKDLGDILW NYH+AM LPKEQP+
Sbjct: 985 QLFSHQQAKDEALLWEMIRARLKISTPEANIEEFRAKKDLGDILWVNYHRAMGLPKEQPD 1044
Query: 2701 FSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKK 2880
FSEDLW RCAEEVQNTYLKK+++Q+KGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAK+
Sbjct: 1045 FSEDLWNRCAEEVQNTYLKKTMAQLKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKE 1104
Query: 2881 IKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSK 3060
IKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSK
Sbjct: 1105 IKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSK 1164
Query: 3061 PSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTG 3240
PSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTG
Sbjct: 1165 PSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTG 1224
Query: 3241 EGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKP 3420
EGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKP
Sbjct: 1225 EGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKP 1284
Query: 3421 AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDA 3600
AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGV+DAI+NV+ANYSLDA
Sbjct: 1285 AYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVRDAITNVVANYSLDA 1344
Query: 3601 KLAYSLGDDLQDLLSP 3648
KLAYSLGDDLQDLLSP
Sbjct: 1345 KLAYSLGDDLQDLLSP 1360
>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
[Tulip virus X]
Length = 1361
Score = 1691 bits (4380), Expect = 0.0
Identities = 860/1223 (70%), Positives = 963/1223 (78%), Gaps = 7/1223 (0%)
Frame = +1
Query: 1 AHSPKLQTLYATLVLPPEALYRLRSLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYI 180
A SPKLQTLYAT+VLPPEAL YRLRSLYP++YTLTYS+DGFMYI
Sbjct: 164 ARSPKLQTLYATMVLPPEAL-----------------YRLRSLYPEVYTLTYSDDGFMYI 206
Query: 181 PGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRT 360
PGGHAGASY+HKYDQL+WLT G+L + T+TAQRLETKGANHLFIFQRG YLTPERRT
Sbjct: 207 PGGHAGASYYHKYDQLQWLTAGYL-ISESTTVTAQRLETKGANHLFIFQRGRYLTPERRT 265
Query: 361 FTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKE 540
FTT YVTVP+IFLP N RTPI+KT+ MQ+FFYIKSVKE +ERD+WAKFRQLISTKE
Sbjct: 266 FTTATSYVTVPEIFLPSSANARTPITKTLAMQIFFYIKSVKECRERDLWAKFRQLISTKE 325
Query: 541 LQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPS 720
LQH+QP E TLLVNYF+F A+LDS TC ED+LSG+L+ RLLRP R + Q +++FF+G P
Sbjct: 326 LQHFQPDEATLLVNYFDFVANLDSATCHEDILSGSLLTRLLRPARVNWQALVRFFKGSPD 385
Query: 721 FVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTA 900
KLIKAL WQP+ LEF V TV R PPGF +P +P PVN DA T A A
Sbjct: 386 HTKLIKALQWQPVLLEFKVSTVLVHKRTPPGFRHPLCRPLPVNEVDALTTAA------CA 439
Query: 901 ETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGSTRLGGPLLPRIAPDE 1080
S P +LS +QL ALH LGS R G LP +P +
Sbjct: 440 NQSLPLD-----------------------NLSEDQLEALHVLGSLRTDGESLP--SPPK 474
Query: 1081 QDSE---XXXXXXXXXXXTKANTTLNQGDHADQ---APVNSDPATLPWVAWLPKLNALGF 1242
E TK T N A+ P+ DP TLPW AWLP L ALGF
Sbjct: 475 APLETGPHPTPTISAAGPTKTVPTPNVEVSANPLTGTPL-PDPDTLPWKAWLPHLRALGF 533
Query: 1243 EALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPG-LSKVLTTLRSLNRFPTPWCPDR 1419
EA EIQTDP IMPI D++ LP T E+ + KV+ TL+ LNR PTPW PDR
Sbjct: 534 EASEIQTDPRDHSTIMPITDIQTLPHETFDEYDSTSSPFDKVVITLKQLNRSPTPWTPDR 593
Query: 1420 ARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQT 1599
RARA+ SD+KNSRTGKALH+E+Q WKETQT LTE L +SVIHGAGGSGKSQALQT
Sbjct: 594 LRARAYASDIKNSRTGKALHKESQNWKETQTRLTETSETRLGLSVIHGAGGSGKSQALQT 653
Query: 1600 LLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQ 1779
+LR +PDLP+EVVLPTNELR DWL+KLPHNPPEQFRTFERAFV S +PVVIFDDYGKLPQ
Sbjct: 654 MLRNHPDLPVEVVLPTNELRXDWLRKLPHNPPEQFRTFERAFVSSTAPVVIFDDYGKLPQ 713
Query: 1780 GYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRN 1959
G++EAFA+ L+L ILTGDPRQSTHHE+NE+A+I++L PAT IFS L RYYINATHRN
Sbjct: 714 GFLEAFALCRPGLKLAILTGDPRQSTHHESNEQAMIAQLEPATKIFSALCRYYINATHRN 773
Query: 1960 SKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGIT 2139
K LANKLGVYSSN PL V+YGF+P+PG+HLLVPSL+KKAAF DAGHKVSTYAGCQGIT
Sbjct: 774 VKELANKLGVYSSNPSPLHVSYGFRPEPGLHLLVPSLVKKAAFADAGHKVSTYAGCQGIT 833
Query: 2140 APRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLV 2319
AP+VQILLD+DTTMC+ EVLYTALSRAVDSIHF+NSNAQSSAFWEKLEATPYLKTFLSLV
Sbjct: 834 APKVQILLDSDTTMCSSEVLYTALSRAVDSIHFINSNAQSSAFWEKLEATPYLKTFLSLV 893
Query: 2320 REDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCV 2499
RE K+EEF+A VE+ + TL ++SL+DK++REI HG TNCV
Sbjct: 894 REHKLEEFTAVEDPPQEVAPPVTHFPVENASHTLGLIQDSLADKYDREILNTNHGFTNCV 953
Query: 2500 QGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMK 2679
Q +D T QLFSHQQAKDEALLWETI ARL +STPEANL EF AKKDLGD+LW NYH+AMK
Sbjct: 954 QTEDLTVQLFSHQQAKDEALLWETIDARLRLSTPEANLAEFHAKKDLGDVLWENYHRAMK 1013
Query: 2680 LPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKM 2859
LPKEQP+FS +LW RCA EVQ TYL KS+ QIKGGERRQSPDF E++ILIFLKSQWVKKM
Sbjct: 1014 LPKEQPDFSPELWERCAAEVQQTYLSKSLQQIKGGERRQSPDFPENKILIFLKSQWVKKM 1073
Query: 2860 EKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVL 3039
EKLGA KIKPGQTIASFQQ AVMLYGTMARYMRR+RDAL PNNIMINCE+TP DLSRWV
Sbjct: 1074 EKLGAPKIKPGQTIASFQQAAVMLYGTMARYMRRYRDALGPNNIMINCERTPADLSRWVR 1133
Query: 3040 NYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTL 3219
N+WDF+KP YANDFTAFDQSQDGAMLQFEILKAK+FNLPEWVIEGYLDIKL+P+IF GTL
Sbjct: 1134 NHWDFTKPXYANDFTAFDQSQDGAMLQFEILKAKFFNLPEWVIEGYLDIKLTPQIFTGTL 1193
Query: 3220 SIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNR 3399
+IMRLTGEGPTFDANTECNIAYTHTRF IP+ AQ+YAGDDCAIA+VC EKPSFALLKNR
Sbjct: 1194 AIMRLTGEGPTFDANTECNIAYTHTRFHIPDHVAQLYAGDDCAIAEVCQEKPSFALLKNR 1253
Query: 3400 IALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVI 3579
IALQAKPAY PQ RG WAEFCGYLITPKGLIKDPLKLH+SLELAKA +K G KDAI+NV+
Sbjct: 1254 IALQAKPAYAPQTRGAWAEFCGYLITPKGLIKDPLKLHSSLELAKALRKQGRKDAITNVV 1313
Query: 3580 ANYSLDAKLAYSLGDDLQDLLSP 3648
ANYSLDAK+AYSLGDDLQDLLSP
Sbjct: 1314 ANYSLDAKMAYSLGDDLQDLLSP 1336
>dbj|BAU45640.1| RNA-dependent RNA polymerase [Hydrangea ringspot virus]
Length = 1387
Score = 1305 bits (3376), Expect = 0.0
Identities = 689/1205 (57%), Positives = 828/1205 (68%), Gaps = 11/1205 (0%)
Frame = +1
Query: 67 LRSLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVG 246
L +LYAT+VLPPEA ++LRSL+P +YTL Y +D F+Y+PGGHAGASY H Y QL+WL VG
Sbjct: 169 LNTLYATMVLPPEAKHKLRSLHPLVYTLQYLKDHFIYLPGGHAGASYCHTYSQLQWLDVG 228
Query: 247 HLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCR 426
H+ + + ITAQR+ETK ANHLF+F RG TP R+F Y T+P IFLP ++N R
Sbjct: 229 HIVSPSGNCITAQRIETKAANHLFVFIRGRLNTPPMRSFAPMRAYCTLPAIFLPTEFNSR 288
Query: 427 TPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASL 606
TP +KT + QMF Y+KS+K+ E D++AKFRQL T +LQ P EITL+VNYF + L
Sbjct: 289 TPYTKTFLQQMFLYLKSIKKPTETDLYAKFRQLTKTDDLQELDPKEITLVVNYFLLISRL 348
Query: 607 DSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPV--- 777
DS TCF+D+LSG+ ++RLL+PL ++++ Q GR FV+L+KAL+W IT V
Sbjct: 349 DSVTCFDDILSGSALRRLLKPLICWMEKMRQTIFGREEFVRLMKALEWTDITFTEQVMAY 408
Query: 778 RTVNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTAETSTPTTIADSLEGSAENL 957
T +T R G + + P + +RA Y + T D + AE
Sbjct: 409 HTGSTWERFLGGSFKALPLGNELGPGLPEELRAEVARYYG---NALLTGLDETDPKAEAF 465
Query: 958 ASHTSLKVGHADLSTEQLRALHELGSTRLGGPLLPRIAPDE--QDSEXXXXXXXXXXXTK 1131
A + G L A E + R+ +PR +P + K
Sbjct: 466 ALLCNNPHG-TTLFAPPTTAPEEDITHRVLALKVPRGSPPPGFEGPSSTAQPEHEKEVAK 524
Query: 1132 ANTTLNQ-----GDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPI 1296
T L Q G PV++ LPW W P L LGF+A EIQ P VIMPI
Sbjct: 525 PATPLEQEKQPEGQKMITRPVSALEDALPWNKWTPILRGLGFQAREIQRSPHDNSVIMPI 584
Query: 1297 AD-VRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKA 1473
+ V LP + + H V+ L L+R PTPW P RAR++TSD+KN RTG
Sbjct: 585 TNIVSGLPISQIQGH------DLVMRVLEKLSRKPTPWTPCPLRARSYTSDIKNHRTGAL 638
Query: 1474 LHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNE 1653
L +E+ TWKETQT+ E + + +SVIHG GGSGKS A Q LLRQ+PD+ ++VVLPTNE
Sbjct: 639 LLKESATWKETQTLKAERLEKTVGLSVIHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNE 698
Query: 1654 LRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVIL 1833
LRLDW+ K P PE+ +T+ERAF SPVV+FDDYGKLP GYIEA+ +ELVIL
Sbjct: 699 LRLDWMAKAPKVRPEKIKTYERAFTGVSSPVVLFDDYGKLPAGYIEAYVAVQTRVELVIL 758
Query: 1834 TGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPL 2013
TGD RQSTHHE NE+A+IS+LAPAT +F L RYYINATHRN + LANKL VYS
Sbjct: 759 TGDARQSTHHENNEQAMISQLAPATEVFQPLCRYYINATHRNKRDLANKLEVYSEKEGET 818
Query: 2014 KVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKE 2193
K+T GFQP +HLLVPSL+KK+A+ + GHKVSTYAGCQGITAP++QILLDNDT MC+KE
Sbjct: 819 KITMGFQPIKDLHLLVPSLLKKSAYGEMGHKVSTYAGCQGITAPKIQILLDNDTVMCSKE 878
Query: 2194 VLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXX 2373
VLYTALSRAV SIHF+N+ S+FWEKLEATPYLK FLS VRE+ I
Sbjct: 879 VLYTALSRAVHSIHFINTGPTHSSFWEKLEATPYLKAFLSTVREEAIAAHQLPSADPRPD 938
Query: 2374 XXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDE 2553
VE+ + L + E + +KFEREIFTE GHTNCVQ +P QLF HQQAKDE
Sbjct: 939 PEPKTHFPVENTSCALGAYMEKVPEKFEREIFTEDRGHTNCVQTQNPLVQLFPHQQAKDE 998
Query: 2554 ALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAE 2733
ALLWETIKARLTIS+PEAN EEF KKD+GDILW +Y KAM LP+E FSEDLW A
Sbjct: 999 ALLWETIKARLTISSPEANWEEFYKKKDIGDILWLHYKKAMTLPEEPLPFSEDLWRLSAA 1058
Query: 2734 EVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQ 2913
EVQNTYL K ++ +K GERRQSPDF +HQIL+FLKSQWVKKMEKLG KIK GQTIASFQ
Sbjct: 1059 EVQNTYLSKPMNMLKNGERRQSPDFEKHQILLFLKSQWVKKMEKLGGPKIKAGQTIASFQ 1118
Query: 2914 QHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFD 3093
QHAVMLYGTMARYMRRFR+AL PN+I INCE TP+DLSR++ NYWDF SYANDFTAFD
Sbjct: 1119 QHAVMLYGTMARYMRRFREALGPNHIKINCEATPKDLSRFIQNYWDFKPASYANDFTAFD 1178
Query: 3094 QSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTEC 3273
QSQDGAMLQFEILKAK+FN+PE +I+GYLDIKL+ KIFLG L IMRLTGEGPTFDANTEC
Sbjct: 1179 QSQDGAMLQFEILKAKHFNIPEEIIQGYLDIKLNAKIFLGVLGIMRLTGEGPTFDANTEC 1238
Query: 3274 NIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWA 3453
NIAYTHTRF+IP GTAQ+YAGDD AIA V PE+PSF L+ +AL+AKP Y PQ G WA
Sbjct: 1239 NIAYTHTRFDIPPGTAQLYAGDDSAIACVPPERPSFKLIAKSLALEAKPVYAPQVAGAWA 1298
Query: 3454 EFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQ 3633
EFCGYLITPKGLIKDP KL ASL+L +A +G K + NY D LAY+L D L
Sbjct: 1299 EFCGYLITPKGLIKDPAKLFASLKLLQA--TSGSKKELVEAAGNYERDVGLAYALKDSLY 1356
Query: 3634 DLLSP 3648
++LSP
Sbjct: 1357 EILSP 1361
>dbj|BAU45634.1| RNA-dependent RNA polymerase [Hydrangea ringspot virus]
Length = 1387
Score = 1304 bits (3375), Expect = 0.0
Identities = 689/1205 (57%), Positives = 827/1205 (68%), Gaps = 11/1205 (0%)
Frame = +1
Query: 67 LRSLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVG 246
L +LYAT+VLPPEA ++LRSL+P +YTL Y +D F+Y+PGGHAGASY H Y QL+WL VG
Sbjct: 169 LNTLYATMVLPPEAKHKLRSLHPLVYTLQYLKDHFIYLPGGHAGASYCHTYSQLQWLDVG 228
Query: 247 HLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCR 426
H+ + + ITAQR+ETK ANHLF+F RG TP R+F Y T+P IFLP ++N R
Sbjct: 229 HIVSPSGNCITAQRIETKAANHLFVFIRGRLNTPPMRSFAPMRAYCTLPAIFLPTEFNSR 288
Query: 427 TPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASL 606
TP +KT + QMF Y+KS+K+ E D++AKFRQL T +LQ P EITL+VNYF + L
Sbjct: 289 TPYTKTFLQQMFLYLKSIKKPTETDLYAKFRQLTKTDDLQELDPKEITLVVNYFLLISRL 348
Query: 607 DSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPV--- 777
DS TCF+D+LSG+ ++RLL+PL ++++ Q GR FV+L+KAL+W IT V
Sbjct: 349 DSVTCFDDILSGSALRRLLKPLICWMEKMRQTIFGREEFVRLMKALEWTDITFTEQVMAY 408
Query: 778 RTVNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTAETSTPTTIADSLEGSAENL 957
T +T R G + + P + +RA Y + T D + AE
Sbjct: 409 HTGSTWERFLGGSFKALPLGNELGPGLPEELRAEVARYYG---NALLTGLDETDPKAEAF 465
Query: 958 ASHTSLKVGHADLSTEQLRALHELGSTRLGGPLLPRIAPDE--QDSEXXXXXXXXXXXTK 1131
A + G L A E + R+ +PR +P + K
Sbjct: 466 ALLCNNPHG-TTLFAPPSTAPEEDITHRVLALKVPRGSPPPGFEGPSSAAQPEHEKEVAK 524
Query: 1132 ANTTLNQGDHADQA-----PVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPI 1296
T L Q + PV++ LPW W P L LGF+A EIQ P VIMPI
Sbjct: 525 PATPLEQEKQPEDQKMITRPVSALEDALPWNKWTPILRGLGFQAREIQRSPHDNSVIMPI 584
Query: 1297 AD-VRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKA 1473
+ V LP + + H V+ L L+R PTPW P RAR++TSD+KN RTG
Sbjct: 585 TNIVSGLPISQIQGH------DLVMKVLEKLSRKPTPWTPCPLRARSYTSDIKNHRTGAL 638
Query: 1474 LHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNE 1653
L +E+ TWKETQT+ E + + +SVIHG GGSGKS A Q LLRQ+PD+ ++VVLPTNE
Sbjct: 639 LLKESATWKETQTLKAERLEKTVGLSVIHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNE 698
Query: 1654 LRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVIL 1833
LRLDW+ K P PE+ +T+ERAF SPVV+FDDYGKLP GYIEA+ +ELVIL
Sbjct: 699 LRLDWMAKAPKVRPEKIKTYERAFTGVSSPVVLFDDYGKLPAGYIEAYVAVQTRVELVIL 758
Query: 1834 TGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPL 2013
TGD RQSTHHE NE+A+IS+LAPAT +F L RYYINATHRN + LANKL VYS
Sbjct: 759 TGDARQSTHHENNEQAMISQLAPATEVFQPLCRYYINATHRNKRDLANKLEVYSEKEGET 818
Query: 2014 KVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKE 2193
K+T GFQP +HLLVPSL+KK+A+ + GHKVSTYAGCQGITAP++QILLDNDT MC+KE
Sbjct: 819 KITMGFQPIKDLHLLVPSLLKKSAYGEMGHKVSTYAGCQGITAPKIQILLDNDTVMCSKE 878
Query: 2194 VLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXX 2373
VLYTALSRAV SIHF+N+ S+FWEKLEATPYLK FLS VRE+ I
Sbjct: 879 VLYTALSRAVHSIHFINTGPTHSSFWEKLEATPYLKAFLSTVREEAIAAHQLPSADPRPD 938
Query: 2374 XXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDE 2553
VE+ + L + E + +KFEREIFTE GHTNCVQ +P QLF HQQAKDE
Sbjct: 939 PEPKTHFPVENTSCALGAYMEKVPEKFEREIFTEDRGHTNCVQTQNPLVQLFPHQQAKDE 998
Query: 2554 ALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAE 2733
ALLWETIKARLTIS+PEAN EEF KKD+GDILW +Y KAM LP+E FSEDLW A
Sbjct: 999 ALLWETIKARLTISSPEANWEEFYKKKDIGDILWLHYKKAMTLPEEPLPFSEDLWRLSAA 1058
Query: 2734 EVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQ 2913
EVQNTYL K I+ +K GERRQSPDF +HQIL+FLKSQWVKKMEKLG KIK GQTIASFQ
Sbjct: 1059 EVQNTYLSKPINMLKNGERRQSPDFEKHQILLFLKSQWVKKMEKLGGPKIKAGQTIASFQ 1118
Query: 2914 QHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFD 3093
QHAVMLYGTMARYMRRFR+AL PN+I INCE TP DLSR++ NYWDF SYANDFTAFD
Sbjct: 1119 QHAVMLYGTMARYMRRFREALGPNHIKINCEATPNDLSRFIQNYWDFKPASYANDFTAFD 1178
Query: 3094 QSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTEC 3273
QSQDGAMLQFEILKAK+FN+PE +I+GYLDIKL+ KIFLG L IMRLTGEGPTFDANTEC
Sbjct: 1179 QSQDGAMLQFEILKAKHFNIPEEIIQGYLDIKLNAKIFLGVLGIMRLTGEGPTFDANTEC 1238
Query: 3274 NIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWA 3453
NIAYTHTRF+IP GTAQ+YAGDD AIA V PE+PSF L+ +AL+AKP Y PQ G WA
Sbjct: 1239 NIAYTHTRFDIPPGTAQLYAGDDSAIACVPPERPSFKLIAKSLALEAKPVYAPQVAGAWA 1298
Query: 3454 EFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQ 3633
EFCGYLITPKGLIKDP KL ASL+L +A +G K + NY D LAY+L D L
Sbjct: 1299 EFCGYLITPKGLIKDPAKLFASLKLLQA--TSGSKKELVEAAGNYERDVGLAYALKDSLY 1356
Query: 3634 DLLSP 3648
++LSP
Sbjct: 1357 EILSP 1361
>gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
virus]
Length = 711
Score = 1286 bits (3329), Expect = 0.0
Identities = 628/686 (91%), Positives = 653/686 (95%)
Frame = +1
Query: 1591 LQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGK 1770
LQTLLRQ+P LP+EVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGK
Sbjct: 1 LQTLLRQHPSLPVEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGK 60
Query: 1771 LPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINAT 1950
LPQGY+EAFAMTHASLELVILTGDPRQSTHHEANEEALISKL PATTIFSELSRYYINAT
Sbjct: 61 LPQGYLEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLPPATTIFSELSRYYINAT 120
Query: 1951 HRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQ 2130
HRNSKFLANKLGVYSSNSCPLKVTYG QPQPG+HLLVPSLMKKAAFTDAGHKVSTYAGCQ
Sbjct: 121 HRNSKFLANKLGVYSSNSCPLKVTYGSQPQPGLHLLVPSLMKKAAFTDAGHKVSTYAGCQ 180
Query: 2131 GITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFL 2310
GITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHF+NSNAQSSAFWEKLEATPYLKTFL
Sbjct: 181 GITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFINSNAQSSAFWEKLEATPYLKTFL 240
Query: 2311 SLVREDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHT 2490
SLVRED++ EFSA VED TTTLDDF+E L DKF+REIF +AHGHT
Sbjct: 241 SLVREDRVAEFSASPADPTPVAPPCTHFPVEDGTTTLDDFREELQDKFDREIFNQAHGHT 300
Query: 2491 NCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHK 2670
NCVQ D+PTTQLF+HQQAKDEALLWETI ARLTIS+PEANL EFRAKKDLGDILW NY K
Sbjct: 301 NCVQTDNPTTQLFAHQQAKDEALLWETINARLTISSPEANLAEFRAKKDLGDILWENYRK 360
Query: 2671 AMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWV 2850
AMKLP EQP+FSEDLWTRCAEEVQNTYLKKS++QIKGG+RRQSPDFHEHQILIFLKSQWV
Sbjct: 361 AMKLPNEQPDFSEDLWTRCAEEVQNTYLKKSVAQIKGGDRRQSPDFHEHQILIFLKSQWV 420
Query: 2851 KKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSR 3030
KKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSR
Sbjct: 421 KKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSR 480
Query: 3031 WVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFL 3210
WVLN+WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFL
Sbjct: 481 WVLNHWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFL 540
Query: 3211 GTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALL 3390
GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEG AQIYAGDDCAI+QVCPEKPSF+LL
Sbjct: 541 GTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGAAQIYAGDDCAISQVCPEKPSFSLL 600
Query: 3391 KNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAIS 3570
KNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+
Sbjct: 601 KNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAIT 660
Query: 3571 NVIANYSLDAKLAYSLGDDLQDLLSP 3648
NV+ANYSLDAKLAYSLGDDLQDLLSP
Sbjct: 661 NVVANYSLDAKLAYSLGDDLQDLLSP 686
>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
Length = 1386
Score = 1266 bits (3276), Expect = 0.0
Identities = 676/1211 (55%), Positives = 813/1211 (67%), Gaps = 17/1211 (1%)
Frame = +1
Query: 67 LRSLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVG 246
L +LYAT+VLPPEA ++LRSL+P +YTL Y +D F+Y+PGGHAGASY H Y QL+WL VG
Sbjct: 169 LNTLYATMVLPPEAKHKLRSLHPLVYTLQYLKDHFIYLPGGHAGASYCHTYSQLQWLDVG 228
Query: 247 HLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCR 426
H+ + + ITAQR+ETK ANHLF+F RG TP R+F Y T+P IFLP ++N R
Sbjct: 229 HIVSPSGNCITAQRIETKAANHLFVFIRGRLNTPPMRSFAPMRAYCTLPAIFLPTEFNSR 288
Query: 427 TPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI---TLLVNYFEFT 597
TP +KT + QMF Y+KS+K+ E D++AKFRQL T +LQ P LL + E
Sbjct: 289 TPYTKTFLQQMFLYLKSIKKPTETDLYAKFRQLTKTDDLQELDPKRSHYGELLPPHLEAR 348
Query: 598 ASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPV 777
S +LSG+ ++RLL+PL ++++ Q GR FV+L+KAL+W IT V
Sbjct: 349 FS----HLLRCILSGSALRRLLKPLICWMEKMRQTIFGREEFVRLMKALEWTDITFTEQV 404
Query: 778 ---RTVNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTAETSTPTTIADSLEGSA 948
T +T R G + + P + +RA Y T D +
Sbjct: 405 MAYHTGSTWERFLGGSFKALPLGNELGPGLPEELRAEVARYYGNALLTGLDETDPKAEAF 464
Query: 949 ENLASH---TSLKVGHADLSTEQ-------LRALHELGSTRLGGPLLPRIAPDEQDSEXX 1098
L ++ T+L H E L+ H GGP A EQ+ E
Sbjct: 465 ALLCNNPHGTTLFAPHTTAPEEDITHRVLALKVPHGSPPPGFGGP--SSAAQPEQEKEVA 522
Query: 1099 XXXXXXXXXTKANTTLNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTG 1278
+ +G PV++ LPW W P L LGF+A EIQ P
Sbjct: 523 RPATPPEQEKQP-----EGQKMITRPVSTLEDALPWNKWTPILRGLGFQAREIQRSPHDN 577
Query: 1279 EVIMPIAD-VRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKN 1455
VIMPI + V LP + + H V+ L L+R PTPW P RAR++TSD+KN
Sbjct: 578 SVIMPITNIVSGLPISQIQGH------ELVMGVLEKLSRKPTPWTPCPLRARSYTSDIKN 631
Query: 1456 SRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEV 1635
RTG L +E+ TWKETQT+ E + + +SVIHG GGSGKS A Q LLRQ+PD+ ++V
Sbjct: 632 HRTGALLLKESATWKETQTLKAERLEKTVGLSVIHGCGGSGKSFAFQELLRQHPDVDLQV 691
Query: 1636 VLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHAS 1815
VLPTNELRLDW+ K P PE+ +T+ERAF SPVV+FDDYGKLP GYIEA+
Sbjct: 692 VLPTNELRLDWMAKAPKVRPEKIKTYERAFTGVSSPVVLFDDYGKLPAGYIEAYVAVQTR 751
Query: 1816 LELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYS 1995
+ELVILTGD RQSTHHE NE+A+IS+LAPAT +F L RYYINATHRN + LANKL VYS
Sbjct: 752 VELVILTGDARQSTHHENNEQAMISQLAPATEVFQPLCRYYINATHRNKRDLANKLEVYS 811
Query: 1996 SNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDT 2175
K+T GFQP +HLLVPSL+KK+A+ + GHKVSTYAGCQGITAP++QILLDNDT
Sbjct: 812 EKEGETKITMGFQPIKDLHLLVPSLLKKSAYGEMGHKVSTYAGCQGITAPKIQILLDNDT 871
Query: 2176 TMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXX 2355
MC+KEVLYTALSRAV SIHF+N+ S+FWEKLEATPYLK FLS VRE+ I
Sbjct: 872 VMCSKEVLYTALSRAVHSIHFINTGPTHSSFWEKLEATPYLKAFLSTVREEAIAAHQLPN 931
Query: 2356 XXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSH 2535
VE+ + L + E + +KFEREIFTE GHTNCVQ +P QLF H
Sbjct: 932 ADPRPDPEPKTHFPVENTSCALGAYMEKVPEKFEREIFTEDRGHTNCVQTQNPLVQLFPH 991
Query: 2536 QQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDL 2715
QQAKDEALLWETIKARLTIS+PEAN EEF KKD+GDILW +Y KAM LP+E FSEDL
Sbjct: 992 QQAKDEALLWETIKARLTISSPEANWEEFYRKKDIGDILWLHYKKAMTLPEEPLPFSEDL 1051
Query: 2716 WTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQ 2895
W A EVQNTYL K ++ +K GERRQSPDF +HQIL+FLKSQWVKKMEKLG KIK GQ
Sbjct: 1052 WRLSAAEVQNTYLSKPMNMLKNGERRQSPDFEKHQILLFLKSQWVKKMEKLGGPKIKAGQ 1111
Query: 2896 TIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYAN 3075
TIASFQQHAVMLYGTMARYMRRFR+ L PN+I INCE TP+DLSR++ NYWDF SYAN
Sbjct: 1112 TIASFQQHAVMLYGTMARYMRRFREVLGPNHIKINCEATPKDLSRFIQNYWDFKPASYAN 1171
Query: 3076 DFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTF 3255
DFTAFDQSQDGAMLQFEILKAK+FN+PE +I+GYLDIKL+ KIFLG L IMRLTGEGPTF
Sbjct: 1172 DFTAFDQSQDGAMLQFEILKAKHFNIPEEIIQGYLDIKLNAKIFLGVLGIMRLTGEGPTF 1231
Query: 3256 DANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQ 3435
DANTECNIAYTHTRF+IP GTAQ+YAGDD AIA V PE+PSF L+ +AL+AKP Y PQ
Sbjct: 1232 DANTECNIAYTHTRFDIPPGTAQLYAGDDSAIACVPPERPSFKLIAKSLALEAKPVYAPQ 1291
Query: 3436 ERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYS 3615
G WAEFCGYLITPKGLIKDP KL ASL+L +A +G K + NY D LAY+
Sbjct: 1292 VAGAWAEFCGYLITPKGLIKDPAKLFASLKLLQA--TSGSKKELVEAAGNYERDVGLAYA 1349
Query: 3616 LGDDLQDLLSP 3648
L D L ++LSP
Sbjct: 1350 LKDSLYEILSP 1360
>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|56792005|gb|AAW30448.1|
viral replicase [Hydrangea ringspot virus]
Length = 1386
Score = 1259 bits (3258), Expect = 0.0
Identities = 674/1209 (55%), Positives = 812/1209 (67%), Gaps = 15/1209 (1%)
Frame = +1
Query: 67 LRSLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVG 246
L +LYAT+VLPPEA ++LRSL+P +YTL Y +D F+Y+PGGHAGASY H Y QL+WL VG
Sbjct: 169 LNTLYATMVLPPEAKHKLRSLHPLVYTLQYLKDHFIYLPGGHAGASYCHTYSQLQWLDVG 228
Query: 247 HLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCR 426
H+ + + ITAQR+ETK ANHLF+F RG TP R+F Y T+P IFLP ++N R
Sbjct: 229 HIVSPSGNCITAQRIETKAANHLFVFIRGRLNTPPMRSFAPMRAYCTLPAIFLPTEFNSR 288
Query: 427 TPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI---TLLVNYFEFT 597
TP +KT + QMF Y+KS+K+ E D++AKFRQL T +LQ P LL + E
Sbjct: 289 TPYTKTFLQQMFLYLKSIKKPTETDLYAKFRQLTKTDDLQELDPKRSHYGELLPPHLEAR 348
Query: 598 ASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPV 777
S +LSG+ ++RLL+PL ++++ Q GR FV+L+KAL+W IT V
Sbjct: 349 FS----HLLRCILSGSALRRLLKPLICWMEKMRQTIFGREEFVRLMKALEWTDITFTEQV 404
Query: 778 ---RTVNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTAETSTPTTIADSLEGSA 948
T +T R G + + P + +RA Y T D +
Sbjct: 405 MAYHTGSTWERFLGGSFKALPLGNELGPGLPEELRAEVARYYGNALLTGLDETDPKAEAF 464
Query: 949 ENLASH---TSLKVGHA-----DLSTEQLRALHELGSTRLGGPLLPRIAPDEQDSEXXXX 1104
L ++ T+L H D++ L GS G A EQ+ E
Sbjct: 465 ALLCNNPHGTTLFAPHTTAPEEDITHRVLALKVPRGSPPPGFEGPSSSAQPEQEKEVAKP 524
Query: 1105 XXXXXXXTKANTTLNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEV 1284
+ +G PV++ LPW W P L LGF+A EIQ P V
Sbjct: 525 ATPPEQEKQP-----EGQKMITRPVSALENALPWNKWTPILRGLGFQAREIQRSPHDNSV 579
Query: 1285 IMPIAD-VRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSR 1461
IMPI + V LP + + H V+ L L+R PTPW P RAR++TSD+KN R
Sbjct: 580 IMPITNIVSGLPISQIQGH------ELVMGVLEKLSRKPTPWTPCPLRARSYTSDIKNHR 633
Query: 1462 TGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVL 1641
TG L +E+ TWKETQT+ E + + +SVIHG GGSGKS A Q LLRQ+PD+ ++VVL
Sbjct: 634 TGALLLKESATWKETQTLKAERLEKTVGLSVIHGCGGSGKSFAFQELLRQHPDVDLQVVL 693
Query: 1642 PTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLE 1821
PTNELRLDW+ K P PE+ +T+ERAF SPVV+FDDYGKLP GYIEA+ +E
Sbjct: 694 PTNELRLDWMAKAPKVRPEKIKTYERAFTGVSSPVVLFDDYGKLPAGYIEAYVAVQTRVE 753
Query: 1822 LVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSN 2001
LVILTGD RQSTHHE NE+A+IS+LAPAT +F L RYYINATHRN + LANKL VYS
Sbjct: 754 LVILTGDARQSTHHENNEQAMISQLAPATEVFQPLCRYYINATHRNKRDLANKLEVYSEK 813
Query: 2002 SCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTM 2181
K+T GFQP +HLLVPSL+KK+A+ + GHKVSTYAGCQGITAP++QILLDNDT M
Sbjct: 814 EGETKITMGFQPIKDLHLLVPSLLKKSAYGEMGHKVSTYAGCQGITAPKIQILLDNDTVM 873
Query: 2182 CTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXX 2361
C+KEVLYTALSRAV SIHF+N+ S+FWEKLEATPYLK FLS VRE+ I
Sbjct: 874 CSKEVLYTALSRAVHSIHFINTGPTHSSFWEKLEATPYLKAFLSTVREEAIAAHQLPSAD 933
Query: 2362 XXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQ 2541
VE+ + L + E + +KFEREIFTE GHTNCVQ +P QLF HQQ
Sbjct: 934 PRPDPEPKTHFPVENTSCALGAYMEKVPEKFEREIFTEDRGHTNCVQTQNPLVQLFPHQQ 993
Query: 2542 AKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWT 2721
AKDEALLWETIKARLTIS+PEAN EEF KKD+GDILW +Y KAM LP+E FSEDLW
Sbjct: 994 AKDEALLWETIKARLTISSPEANWEEFYKKKDIGDILWLHYKKAMTLPEEPLPFSEDLWR 1053
Query: 2722 RCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTI 2901
A EVQNTYL K ++ +K GERRQSPDF +HQIL+FLKSQWVKKMEKLG KIK GQTI
Sbjct: 1054 LSAAEVQNTYLSKPMNMLKNGERRQSPDFEKHQILLFLKSQWVKKMEKLGGPKIKAGQTI 1113
Query: 2902 ASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDF 3081
ASFQQHAVMLYGTMARYMRRFR+AL PN+I INCE TP+DLSR++ NYWDF SYANDF
Sbjct: 1114 ASFQQHAVMLYGTMARYMRRFREALGPNHIKINCEATPKDLSRFIQNYWDFKPASYANDF 1173
Query: 3082 TAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDA 3261
TAFDQSQD AMLQFEILKAK+FN+P +I+GYLDIKL+ KIFLG L IMRLTGEGPTFDA
Sbjct: 1174 TAFDQSQDAAMLQFEILKAKHFNIPGEIIQGYLDIKLNAKIFLGVLGIMRLTGEGPTFDA 1233
Query: 3262 NTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQER 3441
NTECNIAYTHTRF+IP GTAQ+YAGDD AIA V PE+PSF L+ +AL+AKP Y PQ
Sbjct: 1234 NTECNIAYTHTRFDIPPGTAQLYAGDDSAIACVPPERPSFKLIAKSLALEAKPVYAPQVA 1293
Query: 3442 GQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLG 3621
G WAEFCGYLITPKGLIKDP KL ASL+L +A +G K + NY D LAY+L
Sbjct: 1294 GAWAEFCGYLITPKGLIKDPAKLFASLKLLQA--TSGSKKELVEAAGNYERDVGLAYALK 1351
Query: 3622 DDLQDLLSP 3648
D L ++LSP
Sbjct: 1352 DSLYEILSP 1360
>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
RNA polymerase [Cassava common mosaic virus]
gi|1587823|prf||2207297A ORF 1 [Cassava common mosaic
virus]
Length = 1449
Score = 1059 bits (2739), Expect = 0.0
Identities = 531/828 (64%), Positives = 631/828 (76%), Gaps = 5/828 (0%)
Frame = +1
Query: 1180 NSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLS 1359
N+ A LPW W+PKLNALGFEA E Q P T +IMPI D+ K +P H
Sbjct: 612 NAKEAGLPWAVWMPKLNALGFEAKEKQISPITKSMIMPITDI----KTGIPVHRETKAPQ 667
Query: 1360 KVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTAN 1539
++L L++L+R PT W PD RA++FTSD+KN RTGK L +E+Q+WKE QT+ ++
Sbjct: 668 ELLDLLKALSRMPTLWTPDTLRAKSFTSDIKNGRTGKCLQQESQSWKEAQTLKVDHNIRP 727
Query: 1540 LAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFER 1719
+ +SVIHGAGGSGKS ALQ LLR +P+LPI+V+LPTNELR+DWL KLP N PE FRTFE+
Sbjct: 728 VPLSVIHGAGGSGKSAALQDLLRDHPELPIQVILPTNELRMDWLSKLPRNRPENFRTFEK 787
Query: 1720 AFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLA 1899
A++ + +P +I DDYGKLPQGY+EAFA+TH ++EL++LTGD +QS HHE NE+A+I++L
Sbjct: 788 AYLQTNAPSIIMDDYGKLPQGYVEAFAVTHPNVELIVLTGDNKQSVHHETNEQAMIAQLE 847
Query: 1900 PATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKK 2079
P+T IFS+ SRYYINATHRN+K LAN LGVYS N+ LK+T+GFQP +HLLVPSL+KK
Sbjct: 848 PSTQIFSQFSRYYINATHRNAKKLANMLGVYSDNNKELKITHGFQPIKDIHLLVPSLIKK 907
Query: 2080 AAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQS 2259
AAF++AGHK STYAGCQGITA ++QILLD++T MC++EVLYTALSRAVDSIHF+N+ S
Sbjct: 908 AAFSEAGHKTSTYAGCQGITARKLQILLDSNTPMCSQEVLYTALSRAVDSIHFINTAPTS 967
Query: 2260 SAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKES 2439
S FWEKLEATPYLKTFLS+VREDKI E+ VE+ T L++F E
Sbjct: 968 SNFWEKLEATPYLKTFLSMVREDKILEWRPKEPEPAKEEPPKTHFPVENGNTILEEFTEE 1027
Query: 2440 LSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEE 2619
L+ K EREIF E+HGHTNCVQ D+ Q SHQQAKDEALLWETIKARL IS + N E
Sbjct: 1028 LAQKHEREIFNESHGHTNCVQTDNKIIQTLSHQQAKDEALLWETIKARLVISHKQHNWTE 1087
Query: 2620 FRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQS 2799
F KKD+GDILW NY +AM LP++ F E+LW A E+Q+TYL KS +K GERRQS
Sbjct: 1088 FVKKKDIGDILWLNYKRAMHLPEDPIPF-EELWELAAREIQHTYLSKSTQMLKNGERRQS 1146
Query: 2800 PDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALS 2979
PDF E ILIFLKSQWVKKMEKLGA KIKPGQTIASFQQ AVMLYGTMARYMRR RD
Sbjct: 1147 PDFGEKDILIFLKSQWVKKMEKLGAPKIKPGQTIASFQQSAVMLYGTMARYMRRIRDIYM 1206
Query: 2980 PNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPE 3159
P +IMINCE+TP DLS W LNYW+F KPSYANDFTAFDQSQDGAMLQFEILKAK+ N+PE
Sbjct: 1207 PEHIMINCERTPTDLSYWALNYWNFDKPSYANDFTAFDQSQDGAMLQFEILKAKHHNIPE 1266
Query: 3160 WVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGD 3339
WV+EGYLDIKL +IFLGTLSIMRLTGE TFDANTECNIAYTHTRF+IPEG AQ
Sbjct: 1267 WVLEGYLDIKLDSRIFLGTLSIMRLTGEYQTFDANTECNIAYTHTRFDIPEGVAQ----- 1321
Query: 3340 DCAIAQVCPEKPSFALLKNRIALQ-----AKPAYTPQERGQWAEFCGYLITPKGLIKDPL 3504
D A+ C EKPSF L+++ ++L+ KP Q G+WAEFCGYLITPKGLIKDPL
Sbjct: 1322 DSAMDATCLEKPSFKLIESELSLKLYAGDCKPCLKAQIPGEWAEFCGYLITPKGLIKDPL 1381
Query: 3505 KLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSP 3648
KL AS LAK + K + N + NY+ D KLAY LGDDL +LL+P
Sbjct: 1382 KLAASFRLAKERGKR----ELDNCLENYARDMKLAYDLGDDLLELLTP 1425
Score = 271 bits (693), Expect = 5e-70
Identities = 132/253 (52%), Positives = 172/253 (67%), Gaps = 12/253 (4%)
Frame = +1
Query: 64 RLRSLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTV 243
+L++ YAT+VLPPEAL+++ SLYPQIYTL Y E GF+Y PGGHAGASY+H+Y QL WL V
Sbjct: 168 KLKTFYATMVLPPEALHKMNSLYPQIYTLQYKEKGFIYTPGGHAGASYYHEYSQLGWLDV 227
Query: 244 GHLT--AANQP----------TITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVT 387
G + N P +TAQR+ETKGANHLF+FQRG TP+ R+ T Y+T
Sbjct: 228 GLIEYFEENAPDGSEYLGTKWAVTAQRIETKGANHLFVFQRGRLQTPQMRSIATNTQYIT 287
Query: 388 VPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI 567
VP +FLP+K+N R P+ KTI QMF YIKSVK+ ERDI++K RQLI T ELQ Y P E+
Sbjct: 288 VPAVFLPKKFNSRQPLKKTIAQQMFLYIKSVKQVTERDIYSKLRQLIKTSELQEYSPDEL 347
Query: 568 TLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALD 747
LL NYF + L S E+VL+G+L ++L RP++S + + G+P F +L++AL
Sbjct: 348 VLLANYFMLISELSSKASAEEVLAGSLFKKLFRPIKSKVTAFIHKLFGQPEFAQLLEALL 407
Query: 748 WQPITLEFPVRTV 786
W + L PVR V
Sbjct: 408 WTNVDLILPVRYV 420
>gb|ALQ32669.1| ORF1 [Bamboo mosaic virus]
Length = 1365
Score = 992 bits (2565), Expect = 0.0
Identities = 540/1214 (44%), Positives = 710/1214 (58%), Gaps = 20/1214 (1%)
Frame = +1
Query: 64 RLRSLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTV 243
+L +L AT+VLPPEA +L+SLYP+IYTL Y F+Y PGG +G Y H Y L WL +
Sbjct: 166 QLETLLATIVLPPEATLKLKSLYPEIYTLHYMPQKFLYKPGGLSGGEYEHDYKDLAWLKI 225
Query: 244 GHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNC 423
GH+T + +T R+E+K ANHL + +RG R++ T E V VP IFLP KYN
Sbjct: 226 GHVTTPSM-CLTVDRVESKAANHLLLIRRGRLKLNHYRSYDTPEPLVVVPKIFLPPKYNA 284
Query: 424 RTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTAS 603
+ PI+KT Y+KS E K RD+WAK RQ I+ EL Y+P+E+ LL NYF
Sbjct: 285 QKPITKTKANSWILYVKSAGEPKIRDVWAKLRQTIANSELNQYEPAELLLLTNYFYVLGK 344
Query: 604 LDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPV-R 780
+DS T FE +L N+++RL RP + IQ + + G +F++L KAL + F V R
Sbjct: 345 MDSITSFETLLGDNILKRLFRPAIAKIQEIKHWITGPTAFMQLYKALQLVDVDFTFEVTR 404
Query: 781 TVNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTAETSTPTTIADSLEGSAENLA 960
T + +P P P+DA ++ E+L
Sbjct: 405 NWETEQKN---------QPEPELPKDA------------------------IDALVESL- 430
Query: 961 SHTSLKVGHADLSTEQLRALHELGSTRLGGPLLPR--------------IAPDEQDSEXX 1098
+ + +AD + H P LP+ IAP+ + +E
Sbjct: 431 ----IGINYADAPVADIEGSHRQERKPQPHPTLPQPLQQTKCPEDAEEPIAPNCEVNEVR 486
Query: 1099 XXXXXXXXXTKANTTLNQ-----GDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQT 1263
++ +NQ G Q S LPW AWL L LGF+ Q
Sbjct: 487 ETPKEYTPHSQTTPEVNQEASSSGSATIQEQEPSTSHDLPWKAWLKLLKGLGFQGDLEQL 546
Query: 1264 DPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTS 1443
D + G++I PI +R LP E ++ P + TTLR +NR P + PD RA AF
Sbjct: 547 D-TEGDLIYPIKHIRQLPV----EEFSGP----ITTTLRKMNRLPCKYSPDIERAAAFAR 597
Query: 1444 DVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDL 1623
DV +++TG L +++ WK T + ISVIHGAGGSGKS+ALQ +R N D
Sbjct: 598 DVMSNKTGAILPKQSHEWKTTLKRKCKLNPRQTLISVIHGAGGSGKSRALQEYMRNNRDD 657
Query: 1624 PIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAM 1803
PI +LPTNELR DW KLP + P+ F TFE A + K VVI DDY KLP+GYIEA+
Sbjct: 658 PIVTILPTNELRADWKAKLPAHDPDMFMTFENALLIPKGNVVIMDDYTKLPRGYIEAYVQ 717
Query: 1804 THASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKL 1983
L+L+ILTGDPRQS H E+ E I+ L+P+ +FS SRYYINATHRN++ LAN L
Sbjct: 718 NSPMLDLLILTGDPRQSEHFESVEGNTINDLSPSPVVFSAYSRYYINATHRNNQDLANAL 777
Query: 1984 GVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILL 2163
GVYS +V+ + G H LVPS +K+ + G K STYAGCQGITA RVQI++
Sbjct: 778 GVYSEKKGKTRVSVSNHIEDGRHTLVPSQIKQRNYVSMGRKTSTYAGCQGITASRVQIIV 837
Query: 2164 DNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEF 2343
DNDT C+ +VLYTA SRA D IHF N+ FW K++ TPYL+ L+L +E + +
Sbjct: 838 DNDTAKCSHQVLYTAFSRAADEIHFCNTMTDEKQFWAKVKCTPYLQAILNLTKELSLPDP 897
Query: 2344 SAXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQ 2523
VE+ +++ E L +K +REI++E+ GH+NC+Q ++ Q
Sbjct: 898 KPESDEPLEPKAPLTHIAVENVLPLVEEITEPLPEKHDREIYSESTGHSNCIQTENEFIQ 957
Query: 2524 LFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEF 2703
F HQQAKDE L W TI+ R+ STPEAN EF+ K+ LGDILW Y +AM LP E +F
Sbjct: 958 AFQHQQAKDETLFWATIEKRIVTSTPEANWTEFKTKRPLGDILWLAYKEAMCLPAEPIKF 1017
Query: 2704 SEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 2883
+LW +CA+EVQN YL+K + IK G RQSPDF E I +FLKSQWVKK EK+G +
Sbjct: 1018 DPELWWKCADEVQNKYLQKPLHMIKNGILRQSPDFGERHIALFLKSQWVKKNEKIGTINV 1077
Query: 2884 KPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKP 3063
K GQTIA+F Q VM++GTMARYMRR R+ P N++INCE S+WV +W F K
Sbjct: 1078 KAGQTIAAFYQSTVMIFGTMARYMRRVREKYCPKNVLINCEIDQPTASKWVDTHWKFDKL 1137
Query: 3064 SYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGE 3243
+Y NDF A+DQSQDGAMLQFE++KA++ +LP +IE Y+++KL+ KIFLGTL IMRLTGE
Sbjct: 1138 AYTNDFEAYDQSQDGAMLQFEVMKARHHDLPADLIESYIELKLNAKIFLGTLGIMRLTGE 1197
Query: 3244 GPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPA 3423
GPTFDANTECNIAYTH RF IP+GTAQ+YAGDDCA+ E+ SF L + L++KP
Sbjct: 1198 GPTFDANTECNIAYTHARFHIPKGTAQLYAGDDCALNCEPIERESFKPLAGQFTLKSKPV 1257
Query: 3424 YTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAK 3603
Q +G W EFCG +ITP G +K P K A+L AK Q KD + Y+LD
Sbjct: 1258 TIKQGKGSWPEFCGNIITPYGYLKHPRKTWAALHKAKLQG----KDELKKTATAYALDVL 1313
Query: 3604 LAYSLGDDLQDLLS 3645
Y LGD + D+ +
Sbjct: 1314 PTYELGDAIHDIFT 1327