BLASTX nr result
ID: Rehmannia27_contig00001226
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia27_contig00001226
(9671 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_004935656.2| RNA polymerase beta'' subunit (chloroplast) ... 2578 0.0
gb|ALO62113.1| RNA polymerase beta subunit (chloroplast) [Cresce... 2563 0.0
ref|YP_007353905.1| RNA polymerase beta'' subunit (chloroplast) ... 2557 0.0
ref|YP_009115885.1| RNA polymerase beta'' subunit [Scrophularia ... 2555 0.0
gb|AKZ23935.1| RNA polymerase beta'' subunit (plastid) [Verbascu... 2555 0.0
ref|YP_009117211.1| RNA polymerase beta' subunit (chloroplast) [... 2533 0.0
gb|AKZ23936.1| RNA polymerase beta'' subunit (plastid) [Verbena ... 2518 0.0
gb|AKZ23937.1| RNA polymerase beta'' subunit (plastid) [Teucrium... 2501 0.0
ref|YP_009183582.1| RNA polymerase beta subunit (chloroplast) [S... 2498 0.0
gb|AKZ23934.1| RNA polymerase beta'' subunit (plastid) [Penstemo... 2497 0.0
gb|AKZ23933.1| RNA polymerase beta'' subunit (plastid) [Penstemo... 2495 0.0
gb|AKJ77713.1| RNA polymerase beta'' subunit (chloroplast) [Peri... 2495 0.0
ref|YP_009162251.1| RNA polymerase beta subunit-2 (chloroplast) ... 2491 0.0
ref|YP_008815927.1| RNA polymerase beta'' subunit (chloroplast) ... 2489 0.0
ref|YP_009110592.1| RNA polymerase beta'' chain (chloroplast) [H... 2480 0.0
ref|YP_008964857.1| RNA polymerase beta'' subunit (chloroplast) ... 2480 0.0
gb|AKZ23930.1| RNA polymerase beta'' subunit (plastid) [Monarda ... 2479 0.0
gb|AFV61804.1| RNA polymerase beta'' subunit (chloroplast) [Orig... 2477 0.0
gb|AKZ23931.1| RNA polymerase beta'' subunit (plastid) [Salvia n... 2474 0.0
ref|YP_009144505.1| RNA polymerase beta'' subunit (chloroplast) ... 2474 0.0
>ref|YP_004935656.2| RNA polymerase beta'' subunit (chloroplast) [Sesamum indicum]
gi|378747302|gb|AEO92696.2| RNA polymerase beta'' subunit
(chloroplast) [Sesamum indicum]
gi|496538591|gb|AGL45326.1| RpoC2 (chloroplast) [Sesamum
indicum]
Length = 1390
Score = 2578 bits (6683), Expect = 0.0
Identities = 1309/1397 (93%), Positives = 1323/1397 (94%), Gaps = 3/1397 (0%)
Frame = -1
Query: 7910 MEVFMAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSIS 7731
MEV MAERANLVFHNKVIDGTAMKRLISR IDHFGMAYTSHILDQVKTLGFQQATATSIS
Sbjct: 1 MEVLMAERANLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 60
Query: 7730 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 7551
LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 7550 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 7371
PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 7370 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 7191
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSP+NGMMP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPQNGMMP 240
Query: 7190 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASW 7011
ERIFIQTLIGRVLADDIYMGTRCIATRNQDIG+GLVNRFITFRAQPIAIRTPFTCRSASW
Sbjct: 241 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASW 300
Query: 7010 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXTAEHVRAPS 6831
ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR TAEHVRAPS
Sbjct: 301 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPS 360
Query: 6830 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES 6651
NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES
Sbjct: 361 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES 420
Query: 6650 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 6471
EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI
Sbjct: 421 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 480
Query: 6470 LLGGPRGSSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQSRQKFFTSDFSGKKEDR 6291
LLGGP SS VSLSLHKDQDQMSA SRSVKRRSTSNLSGTNDQSRQKFFTSDFSGKKEDR
Sbjct: 481 LLGGPCRSSPVSLSLHKDQDQMSAQSRSVKRRSTSNLSGTNDQSRQKFFTSDFSGKKEDR 540
Query: 6290 IPDYSDLSRIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQLLQERENELMPPSGIS 6111
IPDY DLSRII TG CNLIDPTILYQNSDLFSKRRRNRFIIPLQ +QERENELMPPSGIS
Sbjct: 541 IPDYLDLSRIIYTGLCNLIDPTILYQNSDLFSKRRRNRFIIPLQSIQERENELMPPSGIS 600
Query: 6110 IEIPINGIFRRNSIFAYIDDPRYKRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRPKY 5931
IEIPINGIFRRNSI AY DDPRY+RKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRPKY
Sbjct: 601 IEIPINGIFRRNSILAYFDDPRYRRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRPKY 660
Query: 5930 QMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKKRIEL 5751
QMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRV GLVRVERKKKRIEL
Sbjct: 661 QMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVAGLVRVERKKKRIEL 720
Query: 5750 KIFSGDVHFPGETDKISRHSGVLIPPGTGKQXXXXXXXXXXWIYVQRITPSKKKYFVLVR 5571
KIFSGD+HFPGETDKISRHSGVLIPPGTGKQ WIYVQRITPSKKKYFVLVR
Sbjct: 721 KIFSGDIHFPGETDKISRHSGVLIPPGTGKQNCKESKKWKNWIYVQRITPSKKKYFVLVR 780
Query: 5570 PVVTYEITDGITLATLFPPDLLHESDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTCLV 5391
PVVTYEITDGITLATLFPPDLL E DNVQLRVVNYILYGNGKPIRGISDTNIQLVRTCLV
Sbjct: 781 PVVTYEITDGITLATLFPPDLLQERDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTCLV 840
Query: 5390 LNWDQDKKSSSSQEARASFVEIRANGLIRHFLRIDLVKSIISYIGKRNDPXXXXXXXXXX 5211
LNWD DKKSSSSQEARASFVEIRANGLIRHFLRIDLVKS ISYIGKRNDP
Sbjct: 841 LNWDPDKKSSSSQEARASFVEIRANGLIRHFLRIDLVKSTISYIGKRNDPSGSGLFSDNG 900
Query: 5210 XDCTNINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVK 5031
DCTN NPFSS Y KARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFN VK
Sbjct: 901 SDCTNTNPFSSSYCKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFNGVK 960
Query: 5030 YHNVIKESIQITKDPLQITKDPLIPIKNSLGPLGTAFLIVNVYSFYHLITHNQILVNNYL 4851
YHNVIKESI +ITKDPLIPIKNSLGPLGTAFLI NVYSFYHLITHNQILVNNYL
Sbjct: 961 YHNVIKESI-------KITKDPLIPIKNSLGPLGTAFLIANVYSFYHLITHNQILVNNYL 1013
Query: 4850 QLDNLKETFQVIK---YYLIDENEKIYNPDSCSNIIFNLNWYFIHLNYCQETSTIMSLGQ 4680
QLDNLK+TFQVI YYL+DEN KIYNPD CSNIIFNLNWYF+H NYCQETST+MSLGQ
Sbjct: 1014 QLDNLKQTFQVINLSTYYLMDENAKIYNPDPCSNIIFNLNWYFLHPNYCQETSTLMSLGQ 1073
Query: 4679 FICENRYIAQNAPYLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLIT 4500
FICEN IA+NAP+LKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILY+GDTLIT
Sbjct: 1074 FICENICIAKNAPHLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLIT 1133
Query: 4499 FIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWTFLIGAE 4320
FIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPW FLIGAE
Sbjct: 1134 FIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWAFLIGAE 1193
Query: 4319 LTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGL 4140
LTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVF PGELIGL
Sbjct: 1194 LTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGL 1253
Query: 4139 LRAERMGRALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKG 3960
LRAERMGRALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRGR+DWLKG
Sbjct: 1254 LRAERMGRALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRVDWLKG 1313
Query: 3959 LKENVVLGGMIPVGTGLKGLVPPSKQHNKSPLETKKNNLFEGEMRDILFHHRKLFDSFLS 3780
LKENVVLGGMIPVGTGLKGLVPPSKQHNK PLETKKNNLFEGE RDILFHHRKLFDSFLS
Sbjct: 1314 LKENVVLGGMIPVGTGLKGLVPPSKQHNKGPLETKKNNLFEGETRDILFHHRKLFDSFLS 1373
Query: 3779 KNFHDRPEQSFIGFNDS 3729
KNFHDRPEQSFIGFNDS
Sbjct: 1374 KNFHDRPEQSFIGFNDS 1390
>gb|ALO62113.1| RNA polymerase beta subunit (chloroplast) [Crescentia cujete]
Length = 1391
Score = 2563 bits (6642), Expect = 0.0
Identities = 1298/1398 (92%), Positives = 1321/1398 (94%), Gaps = 4/1398 (0%)
Frame = -1
Query: 7910 MEVFMAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSIS 7731
MEV MAERANLVFHNKVIDGTAMKRLISR IDHFGMAYTSHILDQVKTLGFQQATATSIS
Sbjct: 1 MEVLMAERANLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 60
Query: 7730 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 7551
LGIDDLLTIPSK+WLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKKWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 7550 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 7371
PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 7370 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 7191
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 240
Query: 7190 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASW 7011
ERIFIQTLIGRVLADDIYMGTRCIATRNQDIG+GLVNRFITFRAQPIAIRTPFTCRSASW
Sbjct: 241 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASW 300
Query: 7010 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXTAEHVRAPS 6831
ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR TAEHVRAPS
Sbjct: 301 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPS 360
Query: 6830 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES 6651
NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES
Sbjct: 361 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES 420
Query: 6650 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 6471
EQVIAE+RAGTSTLNFKEKVRKHIYSDS GEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI
Sbjct: 421 EQVIAEMRAGTSTLNFKEKVRKHIYSDSAGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 480
Query: 6470 LLGGPRGSSLVSLSLHKDQDQMSAHSRSVKRR----STSNLSGTNDQSRQKFFTSDFSGK 6303
LLG P SSLVSLSLHKDQDQMSAHSRSVKR STSNLSG NDQSRQKFFTSDFSGK
Sbjct: 481 LLGEPCRSSLVSLSLHKDQDQMSAHSRSVKRSVKRGSTSNLSGANDQSRQKFFTSDFSGK 540
Query: 6302 KEDRIPDYSDLSRIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQLLQERENELMPP 6123
KEDRIPDYSDLSRIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQ +QERENELMP
Sbjct: 541 KEDRIPDYSDLSRIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQSIQERENELMPS 600
Query: 6122 SGISIEIPINGIFRRNSIFAYIDDPRYKRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEF 5943
SGISIEIPINGIFRR SI AY DDPRY+RKSSGIT+YGTLEMHSI+KKEDLIE+RGGKEF
Sbjct: 601 SGISIEIPINGIFRRKSILAYFDDPRYRRKSSGITQYGTLEMHSILKKEDLIEHRGGKEF 660
Query: 5942 RPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKK 5763
R KYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKK
Sbjct: 661 RAKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKK 720
Query: 5762 RIELKIFSGDVHFPGETDKISRHSGVLIPPGTGKQXXXXXXXXXXWIYVQRITPSKKKYF 5583
RIELKIFSGD+HFPGETDKISRHSGVLIPPGTGKQ WIYVQRITPSKKKYF
Sbjct: 721 RIELKIFSGDIHFPGETDKISRHSGVLIPPGTGKQNSKESKKWKNWIYVQRITPSKKKYF 780
Query: 5582 VLVRPVVTYEITDGITLATLFPPDLLHESDNVQLRVVNYILYGNGKPIRGISDTNIQLVR 5403
VLVRPV+TYEITDGIT ATLFP DLL E DNVQLRVVNYILYGNGKPIRGISDTNIQLVR
Sbjct: 781 VLVRPVITYEITDGITFATLFPTDLLQERDNVQLRVVNYILYGNGKPIRGISDTNIQLVR 840
Query: 5402 TCLVLNWDQDKKSSSSQEARASFVEIRANGLIRHFLRIDLVKSIISYIGKRNDPXXXXXX 5223
TCLVLNWDQDKKSSSSQEARASFVEI+AN LIRHFLRIDLV+S ISYIGKRND
Sbjct: 841 TCLVLNWDQDKKSSSSQEARASFVEIKANDLIRHFLRIDLVQSTISYIGKRNDLSGSGLL 900
Query: 5222 XXXXXDCTNINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPF 5043
CTNINPFSSIYSK RIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPF
Sbjct: 901 SDNGSACTNINPFSSIYSKRRIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPF 960
Query: 5042 NDVKYHNVIKESIQITKDPLQITKDPLIPIKNSLGPLGTAFLIVNVYSFYHLITHNQILV 4863
NDVKYHNVIKESI +ITKDPLIPIKNSLGPLGTAFLI NVYSFYHL+THNQILV
Sbjct: 961 NDVKYHNVIKESI-------KITKDPLIPIKNSLGPLGTAFLIANVYSFYHLLTHNQILV 1013
Query: 4862 NNYLQLDNLKETFQVIKYYLIDENEKIYNPDSCSNIIFNLNWYFIHLNYCQETSTIMSLG 4683
NNYLQLDN K+TFQVIKYYL+DENEKIYNPD CSNIIFNLNWYF+H NYCQETSTIMSLG
Sbjct: 1014 NNYLQLDNFKQTFQVIKYYLMDENEKIYNPDPCSNIIFNLNWYFLHSNYCQETSTIMSLG 1073
Query: 4682 QFICENRYIAQNAPYLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLI 4503
QFICEN IA+NAP+LKSGQVILV VDSVVIRSAK YLATPGATVHGHYGEILY+GDTLI
Sbjct: 1074 QFICENICIAKNAPHLKSGQVILVHVDSVVIRSAKSYLATPGATVHGHYGEILYEGDTLI 1133
Query: 4502 TFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWTFLIGA 4323
TFIYEKSRSGDITQGLPKVEQVLEVRS+DSISMNLEKRVEGWNERITRILGMPW FLIGA
Sbjct: 1134 TFIYEKSRSGDITQGLPKVEQVLEVRSVDSISMNLEKRVEGWNERITRILGMPWAFLIGA 1193
Query: 4322 ELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIG 4143
ELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVF PGELIG
Sbjct: 1194 ELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIG 1253
Query: 4142 LLRAERMGRALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLK 3963
LLRAERMGRALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLK
Sbjct: 1254 LLRAERMGRALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLK 1313
Query: 3962 GLKENVVLGGMIPVGTGLKGLVPPSKQHNKSPLETKKNNLFEGEMRDILFHHRKLFDSFL 3783
GLKENVVLGG+IPVGTGLKGLVPPSKQHNK+ LETKKNNLFEGEMRDILFHHRKLFDSFL
Sbjct: 1314 GLKENVVLGGLIPVGTGLKGLVPPSKQHNKNSLETKKNNLFEGEMRDILFHHRKLFDSFL 1373
Query: 3782 SKNFHDRPEQSFIGFNDS 3729
SKNFHDRPEQSFIGFNDS
Sbjct: 1374 SKNFHDRPEQSFIGFNDS 1391
>ref|YP_007353905.1| RNA polymerase beta'' subunit (chloroplast) [Tectona grandis]
gi|438687594|emb|CCP47120.1| RNA polymerase beta''
subunit (chloroplast) [Tectona grandis]
gi|438688278|emb|CCP47209.1| RNA polymerase beta''
subunit (chloroplast) [Tectona grandis]
gi|438688402|emb|CCP47298.1| RNA polymerase beta''
subunit (chloroplast) [Tectona grandis]
Length = 1395
Score = 2557 bits (6628), Expect = 0.0
Identities = 1301/1402 (92%), Positives = 1325/1402 (94%), Gaps = 8/1402 (0%)
Frame = -1
Query: 7910 MEVFMAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSIS 7731
MEV MAER NLVFHNKVIDGTAMKRLISR IDHFGMAYTSHILDQVKTLGFQQATATSIS
Sbjct: 1 MEVLMAERVNLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 60
Query: 7730 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 7551
LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 7550 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 7371
PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 7370 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 7191
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT+RGISVSPRNGMMP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGMMP 240
Query: 7190 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASW 7011
ERIFIQTLIGRVLADDIYMGTRCIATRNQDIG+GLVNRFITFRAQPIAIRTPFTCRSASW
Sbjct: 241 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASW 300
Query: 7010 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXTAEHVRAPS 6831
ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR TAEHVRAPS
Sbjct: 301 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPS 360
Query: 6830 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES 6651
NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES
Sbjct: 361 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES 420
Query: 6650 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 6471
EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI
Sbjct: 421 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 480
Query: 6470 LLGGPRGSSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQSRQKFFTSDF--SGKKE 6297
LLGGPR SSLVSLS+HKDQDQMSAHSRSVK+RSTSNLSGTN QSR+KFFTSDF GKKE
Sbjct: 481 LLGGPRRSSLVSLSIHKDQDQMSAHSRSVKKRSTSNLSGTNGQSRKKFFTSDFLGKGKKE 540
Query: 6296 DRIPDYSDLSRIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQLLQERENELMPPSG 6117
DRIPDYSDLSRIICTGRCN +DPTILYQNSDLFSKRRRNRFIIPLQ +QERENEL PPS
Sbjct: 541 DRIPDYSDLSRIICTGRCNFVDPTILYQNSDLFSKRRRNRFIIPLQSIQERENELTPPSD 600
Query: 6116 ISIEIPINGIFRRNSIFAYIDDPRYKRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRP 5937
ISIEIPINGIFRRNSI AY+DDPRY+RKSSGITK+GTLEMHSIVKKEDLIEYRGGKEFRP
Sbjct: 601 ISIEIPINGIFRRNSILAYLDDPRYRRKSSGITKHGTLEMHSIVKKEDLIEYRGGKEFRP 660
Query: 5936 KYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKKRI 5757
KYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRV GLVRVE+KKKRI
Sbjct: 661 KYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVAGLVRVEKKKKRI 720
Query: 5756 ELKIFSGDVHFPGETDKISRHSGVLIPPGTGKQXXXXXXXXXXWIYVQRITPSKKKYFVL 5577
ELKIFSGD+HFPGETDKISRHSGVLIPPGTGKQ WIYVQRITPSKKKYFVL
Sbjct: 721 ELKIFSGDIHFPGETDKISRHSGVLIPPGTGKQNSKESKKWKNWIYVQRITPSKKKYFVL 780
Query: 5576 VRPVVTYEITDGITLATLFPPDLLHESDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTC 5397
VRPVVTYEITDGITL TLFPPD L E DNV+LRVVNYILYGNGKPIRGISDTNIQLVRTC
Sbjct: 781 VRPVVTYEITDGITLGTLFPPDPLQERDNVKLRVVNYILYGNGKPIRGISDTNIQLVRTC 840
Query: 5396 LVLNWDQDKKSSSSQEARASFVEIRANGLIRHFLRIDLVKSIISYIGKRNDPXXXXXXXX 5217
LVLNWDQDKKSSSSQEARASFVEIRA+GLIRHFLRIDL+KS ISYIGKRNDP
Sbjct: 841 LVLNWDQDKKSSSSQEARASFVEIRASGLIRHFLRIDLLKSTISYIGKRNDPSGSGLLLD 900
Query: 5216 XXXDCTNINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFND 5037
DCTNINPFSSIYSKARIQQPLNQNQRTIHT LNRNTGFQSLIILSSSNCFRMGPFND
Sbjct: 901 NGSDCTNINPFSSIYSKARIQQPLNQNQRTIHTFLNRNTGFQSLIILSSSNCFRMGPFND 960
Query: 5036 VKYH--NVIKESIQITKDPLQITKDPLIPIKNSLGPLGTAFLIVNVYSFYHLITHNQILV 4863
VKYH NVIKESI QITKDP+IPIKNSLGPLGTAFLI NVYSFYHLITHNQILV
Sbjct: 961 VKYHNYNVIKESI-------QITKDPVIPIKNSLGPLGTAFLIANVYSFYHLITHNQILV 1013
Query: 4862 NNYLQLDNLKETFQVIK--YYLIDENEKIYNPDSCSNIIFNLNWYFIHLNYCQETSTIMS 4689
NNYLQLDNLK+TFQVIK YYLIDENEKIYNPDS SNIIFNLNWYF+H NYCQETSTIMS
Sbjct: 1014 NNYLQLDNLKQTFQVIKFQYYLIDENEKIYNPDSYSNIIFNLNWYFLHPNYCQETSTIMS 1073
Query: 4688 LGQFICENRYIAQNAPYLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDT 4509
LGQFICEN IA+NAP+LKSGQVILVQVDSVV+RSAKPYLATPGATVHGHYGEILY+GDT
Sbjct: 1074 LGQFICENICIAKNAPHLKSGQVILVQVDSVVMRSAKPYLATPGATVHGHYGEILYEGDT 1133
Query: 4508 LITFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWTFLI 4329
LITFIYEKSRSGDITQGLPKVEQVLEVRSI SISMNLEKR+EGW ERI RILGMPW FLI
Sbjct: 1134 LITFIYEKSRSGDITQGLPKVEQVLEVRSIASISMNLEKRIEGWGERIKRILGMPWAFLI 1193
Query: 4328 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGEL 4149
GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVF PGEL
Sbjct: 1194 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGEL 1253
Query: 4148 IGLLRAERMGRALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDW 3969
IGLLRAERMGRALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDW
Sbjct: 1254 IGLLRAERMGRALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDW 1313
Query: 3968 LKGLKENVVLGGMIPVGTGLKGLVPPSKQHNKSPL--ETKKNNLFEGEMRDILFHHRKLF 3795
LKGLKENVVLGGMIPVGTGLKGLVPPSKQHN+SPL ETKKNNLFEGE RDILFHHRKLF
Sbjct: 1314 LKGLKENVVLGGMIPVGTGLKGLVPPSKQHNRSPLEMETKKNNLFEGETRDILFHHRKLF 1373
Query: 3794 DSFLSKNFHDRPEQSFIGFNDS 3729
DSFLSKNFHDR EQSFIGFNDS
Sbjct: 1374 DSFLSKNFHDRLEQSFIGFNDS 1395
>ref|YP_009115885.1| RNA polymerase beta'' subunit [Scrophularia takesimensis]
gi|744673729|gb|AJD00714.1| RNA polymerase beta'' subunit
[Scrophularia takesimensis]
Length = 1389
Score = 2555 bits (6622), Expect = 0.0
Identities = 1297/1396 (92%), Positives = 1318/1396 (94%), Gaps = 2/1396 (0%)
Frame = -1
Query: 7910 MEVFMAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSIS 7731
MEV MAE+ANLVFHNKVIDGTAMKRLISR IDHFGMAYTSHILDQVKTLGFQQATATSIS
Sbjct: 1 MEVLMAEQANLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 60
Query: 7730 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 7551
LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 7550 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 7371
PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 7370 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 7191
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 240
Query: 7190 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASW 7011
ERIFIQTLIGRVLADDIYMGTRCIATRNQDIG+GLVNRFITFRAQPIAIRTPFTCRSASW
Sbjct: 241 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASW 300
Query: 7010 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXTAEHVRAPS 6831
ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR TAEHVRAPS
Sbjct: 301 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPS 360
Query: 6830 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES 6651
NGKIKFNEDLVHPTRTRHGHPAFLCSI+LYVTIESEDI+HNVNIPPQSFLLVQNDQYVES
Sbjct: 361 NGKIKFNEDLVHPTRTRHGHPAFLCSIDLYVTIESEDIQHNVNIPPQSFLLVQNDQYVES 420
Query: 6650 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 6471
EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI
Sbjct: 421 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 480
Query: 6470 LLGGPRGSSLVSLSLHK--DQDQMSAHSRSVKRRSTSNLSGTNDQSRQKFFTSDFSGKKE 6297
LLGGP SSLVSLSLHK DQDQMSAHSRSVKRRS SNLSGT DQSRQKFFTSDF GKKE
Sbjct: 481 LLGGPCRSSLVSLSLHKDQDQDQMSAHSRSVKRRSLSNLSGTADQSRQKFFTSDFWGKKE 540
Query: 6296 DRIPDYSDLSRIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQLLQERENELMPPSG 6117
DRIP YSDLSRI+CTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQ +QERENELMPPS
Sbjct: 541 DRIPYYSDLSRILCTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQSIQERENELMPPSS 600
Query: 6116 ISIEIPINGIFRRNSIFAYIDDPRYKRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRP 5937
ISIEIPINGIFRRNSI AY DDPRY+RKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRP
Sbjct: 601 ISIEIPINGIFRRNSILAYFDDPRYRRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRP 660
Query: 5936 KYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKKRI 5757
KYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIG DTQITLNIRSRVGGLVRVERKKKRI
Sbjct: 661 KYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGGDTQITLNIRSRVGGLVRVERKKKRI 720
Query: 5756 ELKIFSGDVHFPGETDKISRHSGVLIPPGTGKQXXXXXXXXXXWIYVQRITPSKKKYFVL 5577
ELKIFSGD+HFPGETDKISRHSGVLIPPG GKQ WIYVQRITPSKKKYFVL
Sbjct: 721 ELKIFSGDIHFPGETDKISRHSGVLIPPGAGKQNSKESKKWKNWIYVQRITPSKKKYFVL 780
Query: 5576 VRPVVTYEITDGITLATLFPPDLLHESDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTC 5397
VRPVVTYEITDGI LATLFPPDLL E DNV+LRVVNYILYGNGKPIRGISDT IQLVRTC
Sbjct: 781 VRPVVTYEITDGINLATLFPPDLLQERDNVKLRVVNYILYGNGKPIRGISDTTIQLVRTC 840
Query: 5396 LVLNWDQDKKSSSSQEARASFVEIRANGLIRHFLRIDLVKSIISYIGKRNDPXXXXXXXX 5217
LVLNWDQDKKSSSSQE RASFVEI ANGLIRHFLRIDLVKS ISYIGKRNDP
Sbjct: 841 LVLNWDQDKKSSSSQEVRASFVEITANGLIRHFLRIDLVKSPISYIGKRNDPSDSGLRSD 900
Query: 5216 XXXDCTNINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFND 5037
DCTNINPFSSIYSKARI+QPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFND
Sbjct: 901 NGSDCTNINPFSSIYSKARIRQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFND 960
Query: 5036 VKYHNVIKESIQITKDPLQITKDPLIPIKNSLGPLGTAFLIVNVYSFYHLITHNQILVNN 4857
VKYHNVIKESI +ITKDP IPIKNSLGPLGTAFLI NVYSFYHLITHNQILVNN
Sbjct: 961 VKYHNVIKESI-------KITKDPQIPIKNSLGPLGTAFLIGNVYSFYHLITHNQILVNN 1013
Query: 4856 YLQLDNLKETFQVIKYYLIDENEKIYNPDSCSNIIFNLNWYFIHLNYCQETSTIMSLGQF 4677
YLQLDNLK+ FQVIKYYLIDENEKIY PD CSNIIFNLNWYF+H NYCQETSTIMSLGQF
Sbjct: 1014 YLQLDNLKQIFQVIKYYLIDENEKIYKPDPCSNIIFNLNWYFLHPNYCQETSTIMSLGQF 1073
Query: 4676 ICENRYIAQNAPYLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITF 4497
ICEN IA+N P+LKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILY+GDTLITF
Sbjct: 1074 ICENICIAKNIPHLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLITF 1133
Query: 4496 IYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWTFLIGAEL 4317
IYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRV+GWN+RIT+ILGMPW FLIGAEL
Sbjct: 1134 IYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVQGWNDRITKILGMPWAFLIGAEL 1193
Query: 4316 TIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLL 4137
TIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVF PGELIGLL
Sbjct: 1194 TIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLL 1253
Query: 4136 RAERMGRALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGL 3957
RAERMGRALEEAVCYRALLLGIT+ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGL
Sbjct: 1254 RAERMGRALEEAVCYRALLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLKGL 1313
Query: 3956 KENVVLGGMIPVGTGLKGLVPPSKQHNKSPLETKKNNLFEGEMRDILFHHRKLFDSFLSK 3777
KENVVLGGMIPVGTGLKGLVP SK HNKSPLETKKNN+FEGEMRDILFHHRK FDSFLSK
Sbjct: 1314 KENVVLGGMIPVGTGLKGLVPLSKHHNKSPLETKKNNIFEGEMRDILFHHRKFFDSFLSK 1373
Query: 3776 NFHDRPEQSFIGFNDS 3729
NFHD EQSFIGFNDS
Sbjct: 1374 NFHDTSEQSFIGFNDS 1389
>gb|AKZ23935.1| RNA polymerase beta'' subunit (plastid) [Verbascum thapsus]
Length = 1389
Score = 2555 bits (6621), Expect = 0.0
Identities = 1297/1396 (92%), Positives = 1318/1396 (94%), Gaps = 2/1396 (0%)
Frame = -1
Query: 7910 MEVFMAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSIS 7731
MEV MAERANLVFHNKVIDGTAMKRLISR IDHFGMAYTSHILDQVKTLGFQQATATSIS
Sbjct: 1 MEVLMAERANLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 60
Query: 7730 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 7551
LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 7550 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 7371
PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 7370 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 7191
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 240
Query: 7190 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASW 7011
ERIFIQTLIGRVLADDIYMGTRCIATRNQDIG+GLVNRFITFRAQPIAIRTPFTCRSASW
Sbjct: 241 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASW 300
Query: 7010 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXTAEHVRAPS 6831
ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR TAEHVRAPS
Sbjct: 301 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPS 360
Query: 6830 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES 6651
NGKIKFN+DLVHPTRTRHGHPAFLCSI+LYVTIESEDIRHNVNIPPQSFLLVQNDQYVES
Sbjct: 361 NGKIKFNDDLVHPTRTRHGHPAFLCSIDLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES 420
Query: 6650 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 6471
EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI
Sbjct: 421 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 480
Query: 6470 LLGGPRGSSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQSRQKFFTSDFSGKKEDR 6291
LLGGP SSLVSLSLHKDQDQMSAHSRSVKRRS SNLSGT DQSRQKFFTSDFSGKKE R
Sbjct: 481 LLGGPCRSSLVSLSLHKDQDQMSAHSRSVKRRSLSNLSGTADQSRQKFFTSDFSGKKEGR 540
Query: 6290 IPDYSDLSRIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQLLQERENELMPPSGIS 6111
IP YSDLS IICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQ +QERENE MPPS IS
Sbjct: 541 IPYYSDLSPIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQSIQERENEQMPPSSIS 600
Query: 6110 IEIPINGIFRRNSIFAYIDDPRYKRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRPKY 5931
IEIPINGIFRRNSI AY DDPRY+RKSSGITKYGTLEM+SIVKKEDLIEYRGGKEFRPKY
Sbjct: 601 IEIPINGIFRRNSILAYFDDPRYRRKSSGITKYGTLEMNSIVKKEDLIEYRGGKEFRPKY 660
Query: 5930 --QMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKKRI 5757
QMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKKRI
Sbjct: 661 QMQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKKRI 720
Query: 5756 ELKIFSGDVHFPGETDKISRHSGVLIPPGTGKQXXXXXXXXXXWIYVQRITPSKKKYFVL 5577
ELKIFSGD+HFPGETDKISRHSGVLIPPG GKQ WIYVQRITPSKKKYFVL
Sbjct: 721 ELKIFSGDIHFPGETDKISRHSGVLIPPGAGKQNSKESKKWKNWIYVQRITPSKKKYFVL 780
Query: 5576 VRPVVTYEITDGITLATLFPPDLLHESDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTC 5397
VRPVVTYEITDGI LATLFPPDLL E DNV LRVVNYILYGNGKPIRGISDTNIQLVRTC
Sbjct: 781 VRPVVTYEITDGINLATLFPPDLLQERDNVNLRVVNYILYGNGKPIRGISDTNIQLVRTC 840
Query: 5396 LVLNWDQDKKSSSSQEARASFVEIRANGLIRHFLRIDLVKSIISYIGKRNDPXXXXXXXX 5217
LVLNWDQDKKSSSSQE RASFVEI ANGLIRHFLRIDLVKS ISYIGKRNDP
Sbjct: 841 LVLNWDQDKKSSSSQEVRASFVEITANGLIRHFLRIDLVKSPISYIGKRNDPSGSGLRSD 900
Query: 5216 XXXDCTNINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFND 5037
DCTNINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFND
Sbjct: 901 NGSDCTNINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFND 960
Query: 5036 VKYHNVIKESIQITKDPLQITKDPLIPIKNSLGPLGTAFLIVNVYSFYHLITHNQILVNN 4857
VKYHNVIKESI +ITKDP IPIKNSLGPLGTAFLIVNVYSFYHLITHNQILVNN
Sbjct: 961 VKYHNVIKESI-------KITKDPRIPIKNSLGPLGTAFLIVNVYSFYHLITHNQILVNN 1013
Query: 4856 YLQLDNLKETFQVIKYYLIDENEKIYNPDSCSNIIFNLNWYFIHLNYCQETSTIMSLGQF 4677
YLQLDNLK+ FQVIKYYL+DENEKIY PD CSNIIFNLNWYF+H NYCQETSTIMSLGQF
Sbjct: 1014 YLQLDNLKQIFQVIKYYLMDENEKIYKPDPCSNIIFNLNWYFLHPNYCQETSTIMSLGQF 1073
Query: 4676 ICENRYIAQNAPYLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITF 4497
ICEN IA+N P+LKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILY+GDTLITF
Sbjct: 1074 ICENICIAKNIPHLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLITF 1133
Query: 4496 IYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWTFLIGAEL 4317
IYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKR++GWN+RIT+ILGMPW FLIGAEL
Sbjct: 1134 IYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIQGWNDRITKILGMPWAFLIGAEL 1193
Query: 4316 TIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLL 4137
T+ QSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVF PGELIGLL
Sbjct: 1194 TLAQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLL 1253
Query: 4136 RAERMGRALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGL 3957
RAERMGRALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGL
Sbjct: 1254 RAERMGRALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGL 1313
Query: 3956 KENVVLGGMIPVGTGLKGLVPPSKQHNKSPLETKKNNLFEGEMRDILFHHRKLFDSFLSK 3777
KENVVLGGMIPVGTGLKGLVP SKQHNKSPLETKKNNLFEGE+RDILF HRKLFDSFLSK
Sbjct: 1314 KENVVLGGMIPVGTGLKGLVPLSKQHNKSPLETKKNNLFEGEIRDILFDHRKLFDSFLSK 1373
Query: 3776 NFHDRPEQSFIGFNDS 3729
NFHD EQSF+GFNDS
Sbjct: 1374 NFHDTSEQSFLGFNDS 1389
>ref|YP_009117211.1| RNA polymerase beta' subunit (chloroplast) [Premna microphylla]
gi|748013894|gb|AJE28364.1| RNA polymerase beta' subunit
(chloroplast) [Premna microphylla]
Length = 1394
Score = 2533 bits (6564), Expect = 0.0
Identities = 1289/1402 (91%), Positives = 1317/1402 (93%), Gaps = 8/1402 (0%)
Frame = -1
Query: 7910 MEVFMAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSIS 7731
MEV MAERANLVFHNKVIDGTAMKRLISR IDHFGMAYTSHILDQVKTLGFQQATATSIS
Sbjct: 1 MEVLMAERANLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 60
Query: 7730 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 7551
LG+DDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGVDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 7550 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 7371
PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 7370 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 7191
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 240
Query: 7190 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASW 7011
ERIFIQTLIGRVLADDIYMGTRCIATRNQDIG+GLVNRFIT RAQPIAIRTPFTCRSASW
Sbjct: 241 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGIGLVNRFITLRAQPIAIRTPFTCRSASW 300
Query: 7010 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXTAEHVRAPS 6831
ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR TAEHVRAPS
Sbjct: 301 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPS 360
Query: 6830 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES 6651
NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDI+HNVNIPPQSFLLVQNDQYVES
Sbjct: 361 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIQHNVNIPPQSFLLVQNDQYVES 420
Query: 6650 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 6471
EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWS DVYHAPEFTYGNVHLLPKTSHLWI
Sbjct: 421 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSADVYHAPEFTYGNVHLLPKTSHLWI 480
Query: 6470 LLGGPRGSSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQSRQKFFTSDFSGKKEDR 6291
LLGGPR SSLVSLS+HKDQDQMSAHSRSVKRR TSNLSGTNDQSR+KFFTSDFSGKKEDR
Sbjct: 481 LLGGPRRSSLVSLSIHKDQDQMSAHSRSVKRRPTSNLSGTNDQSREKFFTSDFSGKKEDR 540
Query: 6290 IPDYSDLSRIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQLLQERENELMPPSGIS 6111
IPDYSDLSRIICTGRCNL+DPTILYQNSDLFSKRRRNRFIIPLQ +QERENE P S IS
Sbjct: 541 IPDYSDLSRIICTGRCNLVDPTILYQNSDLFSKRRRNRFIIPLQSIQERENERTPLSDIS 600
Query: 6110 IEIPINGIFRRNSIFAYIDDPRYKRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRPKY 5931
IEIPINGIFRRNSI AY+DDPRY+RKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRPKY
Sbjct: 601 IEIPINGIFRRNSILAYLDDPRYRRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRPKY 660
Query: 5930 QMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKKRIEL 5751
QMKVDRFFFIPEE HILPGSSSIMVRNNSIIGVDTQITLNIRSRV GLVRVERKKKRIEL
Sbjct: 661 QMKVDRFFFIPEEAHILPGSSSIMVRNNSIIGVDTQITLNIRSRVTGLVRVERKKKRIEL 720
Query: 5750 KIFSGDVHFPGETDKISRHSGVLIPPGTGKQXXXXXXXXXXWIYVQRITPSKKKYFVLVR 5571
KIFSGD+HFPGETDKISRHSGVLIPPGT KQ WIYVQRITPSKKKYFVLVR
Sbjct: 721 KIFSGDIHFPGETDKISRHSGVLIPPGTEKQNSKESKKWKNWIYVQRITPSKKKYFVLVR 780
Query: 5570 PVVTYEITDGITLATLFPPDLLHESDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTCLV 5391
PVVTYEITDGIT TLFPPDLL E DNV+LRVVN+ LYGNGKPI+GISDTNIQLVRTCLV
Sbjct: 781 PVVTYEITDGITFGTLFPPDLLQERDNVKLRVVNFFLYGNGKPIQGISDTNIQLVRTCLV 840
Query: 5390 LNWDQDKKSSSSQEARASFVEIRANGLIRHFLRIDLVKSIISYIGKRNDPXXXXXXXXXX 5211
LNWDQDKKSSSSQEARASFVEIRANGL+RHFLRIDL+KS ISYIGKRNDP
Sbjct: 841 LNWDQDKKSSSSQEARASFVEIRANGLVRHFLRIDLMKSTISYIGKRNDPSGSGLLSDNG 900
Query: 5210 XDCTNINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVK 5031
DCTNINPFSS+ KARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVK
Sbjct: 901 LDCTNINPFSSVSPKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVK 960
Query: 5030 Y--HNVIKESIQITKDPLQITKDPLIPIKNSLGPLGTAFLIVNVYSFYHLITHNQILVNN 4857
Y HNVIKESI +ITKDP+IPIKNSLGPLG AFLI NVYSFYHLITHNQILVNN
Sbjct: 961 YHNHNVIKESI-------KITKDPVIPIKNSLGPLGAAFLIANVYSFYHLITHNQILVNN 1013
Query: 4856 YLQLDNLKETFQVI--KYYLIDENEKIYNPDSCSNII--FNLNWYFIHLNYCQETSTIMS 4689
YLQLDN K+TFQVI KYYLI+ENEKIYNPD CSNII FNLNWYF++ NYCQETSTIMS
Sbjct: 1014 YLQLDNFKQTFQVIKFKYYLIEENEKIYNPDPCSNIIFNFNLNWYFLYPNYCQETSTIMS 1073
Query: 4688 LGQFICENRYIAQNAPYLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDT 4509
LGQFICEN IA+NAP+LKSGQVILVQVDSVVIRSAK YLATPGATVHGHYGEILY+GDT
Sbjct: 1074 LGQFICENICIAKNAPHLKSGQVILVQVDSVVIRSAKTYLATPGATVHGHYGEILYEGDT 1133
Query: 4508 LITFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWTFLI 4329
LITFIYEKSRSGDITQGLPKVEQVLEVRS+DSISMNLEKR+EGWNERITRILGMPW FLI
Sbjct: 1134 LITFIYEKSRSGDITQGLPKVEQVLEVRSVDSISMNLEKRIEGWNERITRILGMPWAFLI 1193
Query: 4328 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGEL 4149
GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVF PGEL
Sbjct: 1194 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGEL 1253
Query: 4148 IGLLRAERMGRALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDW 3969
IGLLRAERMGRALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDW
Sbjct: 1254 IGLLRAERMGRALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDW 1313
Query: 3968 LKGLKENVVLGGMIPVGTGLKGLVPPSKQHNKSPL--ETKKNNLFEGEMRDILFHHRKLF 3795
LKGLKENVVLGGMIPVGTGLKGLV PSKQHN+SPL ETKKNNLFEGEMRDILFHHRKLF
Sbjct: 1314 LKGLKENVVLGGMIPVGTGLKGLVAPSKQHNRSPLEMETKKNNLFEGEMRDILFHHRKLF 1373
Query: 3794 DSFLSKNFHDRPEQSFIGFNDS 3729
DSF FHDRPEQSFIGFNDS
Sbjct: 1374 DSF-KDYFHDRPEQSFIGFNDS 1394
>gb|AKZ23936.1| RNA polymerase beta'' subunit (plastid) [Verbena hastata]
Length = 1387
Score = 2518 bits (6525), Expect = 0.0
Identities = 1273/1394 (91%), Positives = 1309/1394 (93%)
Frame = -1
Query: 7910 MEVFMAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSIS 7731
MEV MAERANLVFHNKVIDGTAMKRLISR IDHFGMAYTSHILDQVKTLGFQQATATSIS
Sbjct: 1 MEVLMAERANLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 60
Query: 7730 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 7551
LGIDDLLTIPSKRWLVQDAEQQSLILEKHH+YGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHYYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 7550 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 7371
PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 7370 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 7191
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNG+MP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGIMP 240
Query: 7190 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASW 7011
ERIFIQTLIGRVLADDIYMGTRCIATRNQD+GVGLVNRFITFRAQPIAIRTPFTCRSASW
Sbjct: 241 ERIFIQTLIGRVLADDIYMGTRCIATRNQDVGVGLVNRFITFRAQPIAIRTPFTCRSASW 300
Query: 7010 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXTAEHVRAPS 6831
ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR TAEHVRAPS
Sbjct: 301 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPS 360
Query: 6830 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES 6651
NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPP+SFLLVQNDQYVES
Sbjct: 361 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPESFLLVQNDQYVES 420
Query: 6650 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 6471
EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGE HWSTDVYHAPEFTYGNVHLLPKTSH+WI
Sbjct: 421 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGERHWSTDVYHAPEFTYGNVHLLPKTSHVWI 480
Query: 6470 LLGGPRGSSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQSRQKFFTSDFSGKKEDR 6291
L G P SSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQSRQKFFTS+FSGKKEDR
Sbjct: 481 LFGEPCRSSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQSRQKFFTSNFSGKKEDR 540
Query: 6290 IPDYSDLSRIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQLLQERENELMPPSGIS 6111
IPDYSDLSRI+CTGR NLID TI YQNSDLFSKRRRNRFIIPLQ +QERE ELMPPSGI+
Sbjct: 541 IPDYSDLSRILCTGRSNLIDSTIFYQNSDLFSKRRRNRFIIPLQSIQEREKELMPPSGIA 600
Query: 6110 IEIPINGIFRRNSIFAYIDDPRYKRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRPKY 5931
+EIPINGIFRRNSI AY DDPRY+RKSSGIT+YGTLEMHSIVKKEDLIEYRG +EFRPKY
Sbjct: 601 VEIPINGIFRRNSILAYFDDPRYRRKSSGITQYGTLEMHSIVKKEDLIEYRGCREFRPKY 660
Query: 5930 QMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKKRIEL 5751
QMKVDRFFFIPEEVHILPGSSSIMVRNNS+IGVDTQITL +RSRVGGLVRVER K RIEL
Sbjct: 661 QMKVDRFFFIPEEVHILPGSSSIMVRNNSLIGVDTQITLTLRSRVGGLVRVERNKNRIEL 720
Query: 5750 KIFSGDVHFPGETDKISRHSGVLIPPGTGKQXXXXXXXXXXWIYVQRITPSKKKYFVLVR 5571
KIFSGD+HFPGETDKISRHSGVLIPPGTGK+ WIYV RITPSKKK+FVLVR
Sbjct: 721 KIFSGDIHFPGETDKISRHSGVLIPPGTGKKNSKESKKGKNWIYVHRITPSKKKHFVLVR 780
Query: 5570 PVVTYEITDGITLATLFPPDLLHESDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTCLV 5391
PVVTYEITDGITLA LFPPDLL E DNVQLRVVNYILYGNGK IR ISDTNIQLVRTCLV
Sbjct: 781 PVVTYEITDGITLARLFPPDLLQEKDNVQLRVVNYILYGNGKSIRAISDTNIQLVRTCLV 840
Query: 5390 LNWDQDKKSSSSQEARASFVEIRANGLIRHFLRIDLVKSIISYIGKRNDPXXXXXXXXXX 5211
LNW Q K SSSSQEARASFVEIRANGLIR FLRIDLVKS ISYIGKRNDP
Sbjct: 841 LNWAQHKNSSSSQEARASFVEIRANGLIRDFLRIDLVKSTISYIGKRNDPSGSGLLSDNG 900
Query: 5210 XDCTNINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVK 5031
DCTNI+PFSSIYSKA++QQPLNQNQRT+HTLLNRNTGFQSLIILSSSNCFRMGPF DVK
Sbjct: 901 SDCTNIHPFSSIYSKAKVQQPLNQNQRTLHTLLNRNTGFQSLIILSSSNCFRMGPFKDVK 960
Query: 5030 YHNVIKESIQITKDPLQITKDPLIPIKNSLGPLGTAFLIVNVYSFYHLITHNQILVNNYL 4851
YHNV+KESI I+KDPLIPIKNSLGPLGTAFLI NVYSFYHLITHNQILVNNYL
Sbjct: 961 YHNVLKESI-------PISKDPLIPIKNSLGPLGTAFLIANVYSFYHLITHNQILVNNYL 1013
Query: 4850 QLDNLKETFQVIKYYLIDENEKIYNPDSCSNIIFNLNWYFIHLNYCQETSTIMSLGQFIC 4671
+LDNLK+TFQVIKYYL+DENEKIY PD CSNIIFNLNW F H +YCQ+TSTIMSLGQFIC
Sbjct: 1014 ELDNLKQTFQVIKYYLMDENEKIYKPDPCSNIIFNLNWDFRHSHYCQDTSTIMSLGQFIC 1073
Query: 4670 ENRYIAQNAPYLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITFIY 4491
EN IA+NAP+LKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITFIY
Sbjct: 1074 ENICIAKNAPHLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITFIY 1133
Query: 4490 EKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWTFLIGAELTI 4311
EKSRSGDITQGLPKVEQV EVRSIDSISMNLEKRV+GWNERITRILGMPW FLIGAELTI
Sbjct: 1134 EKSRSGDITQGLPKVEQVFEVRSIDSISMNLEKRVDGWNERITRILGMPWAFLIGAELTI 1193
Query: 4310 VQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLLRA 4131
VQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVF PGELIGLLRA
Sbjct: 1194 VQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRA 1253
Query: 4130 ERMGRALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKE 3951
ERMGRALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKE
Sbjct: 1254 ERMGRALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKE 1313
Query: 3950 NVVLGGMIPVGTGLKGLVPPSKQHNKSPLETKKNNLFEGEMRDILFHHRKLFDSFLSKNF 3771
NVVLGGMIP+GTGLKGLVPPSKQ+ KSPLETKKNNLFEGEMRDILF HRKL DSFL+KNF
Sbjct: 1314 NVVLGGMIPLGTGLKGLVPPSKQYKKSPLETKKNNLFEGEMRDILFQHRKLLDSFLAKNF 1373
Query: 3770 HDRPEQSFIGFNDS 3729
H RP+QSFIGFNDS
Sbjct: 1374 HARPDQSFIGFNDS 1387
>gb|AKZ23937.1| RNA polymerase beta'' subunit (plastid) [Teucrium canadense]
Length = 1378
Score = 2501 bits (6481), Expect = 0.0
Identities = 1268/1381 (91%), Positives = 1295/1381 (93%), Gaps = 6/1381 (0%)
Frame = -1
Query: 7910 MEVFMAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSIS 7731
MEV MAERANLVFHNKVIDGTAMKRLISR IDHFGMAYTSHILDQVKTLGFQQATATSIS
Sbjct: 1 MEVLMAERANLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 60
Query: 7730 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 7551
LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 7550 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 7371
PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 7370 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 7191
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 240
Query: 7190 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASW 7011
ERIFIQTLIGRVLADDIYMG RCIATRNQD+G+GLVNRFITFRAQPIAIRTPFTCR+ASW
Sbjct: 241 ERIFIQTLIGRVLADDIYMGARCIATRNQDVGIGLVNRFITFRAQPIAIRTPFTCRNASW 300
Query: 7010 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXTAEHVRAPS 6831
ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR TAEHVRAPS
Sbjct: 301 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPS 360
Query: 6830 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES 6651
NGKIKFNEDLVHP RTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES
Sbjct: 361 NGKIKFNEDLVHPIRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES 420
Query: 6650 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 6471
EQVIAEIRAG STLNFKEKVRKHIYSDS GEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI
Sbjct: 421 EQVIAEIRAGISTLNFKEKVRKHIYSDSGGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 480
Query: 6470 LLGGPRGSSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQSRQKFFTSDFSGKKEDR 6291
LLGGPR SSLVSLS+HKDQDQM AHSRSVKRRSTSNLSGT DQSR+KFFTSDFSGKKEDR
Sbjct: 481 LLGGPRRSSLVSLSIHKDQDQMGAHSRSVKRRSTSNLSGTKDQSREKFFTSDFSGKKEDR 540
Query: 6290 IPDYSDLSRIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQLLQERENELMPPSGIS 6111
IPDYSDLSRIICTGRCNL+DPTILYQNSDLFSKRRRNRFIIPLQ +QE ENEL P S IS
Sbjct: 541 IPDYSDLSRIICTGRCNLVDPTILYQNSDLFSKRRRNRFIIPLQSIQECENELTPLSDIS 600
Query: 6110 IEIPINGIFRRNSIFAYIDDPRYKRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRPKY 5931
IEIPINGIFRRNSI AY+DDPRY+RKSSGITKYGTLEMHSIVKKEDLIEY+GGKEFRPKY
Sbjct: 601 IEIPINGIFRRNSILAYLDDPRYRRKSSGITKYGTLEMHSIVKKEDLIEYQGGKEFRPKY 660
Query: 5930 QMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKKRIEL 5751
QMKVDRFFFIPEEVHILPGSS IMVRNNSIIGVDTQITLNIRSR GLVRVERKKKRIEL
Sbjct: 661 QMKVDRFFFIPEEVHILPGSSFIMVRNNSIIGVDTQITLNIRSRAAGLVRVERKKKRIEL 720
Query: 5750 KIFSGDVHFPGETDKISRHSGVLIPPGTGKQXXXXXXXXXXWIYVQRITPSKKKYFVLVR 5571
KIFSGD+HFPGETDKISRHSGVLIPPGTGKQ WIYVQRITPSKKKYFVLVR
Sbjct: 721 KIFSGDIHFPGETDKISRHSGVLIPPGTGKQNSKESKRGKNWIYVQRITPSKKKYFVLVR 780
Query: 5570 PVVTYEITDGITLATLFPPDLLHESDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTCLV 5391
PVVTYEITDGITL TLFPPD L E DNV+LR VNYILYGNGKPIRGISDTNIQLVRTCLV
Sbjct: 781 PVVTYEITDGITLGTLFPPDPLQERDNVKLRAVNYILYGNGKPIRGISDTNIQLVRTCLV 840
Query: 5390 LNWDQDKKSSSSQEARASFVEIRANGLIRHFLRIDLVKSIISYIGKRNDPXXXXXXXXXX 5211
LNWDQDKKSS SQEARASFVEIRANGLIRHFLRIDL+KS ISYIGKRNDP
Sbjct: 841 LNWDQDKKSSFSQEARASFVEIRANGLIRHFLRIDLLKSTISYIGKRNDPSVSGLLSDNG 900
Query: 5210 XDCTNINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVK 5031
DCTNINPFSSIYSKA IQQ LNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVK
Sbjct: 901 SDCTNINPFSSIYSKASIQQSLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVK 960
Query: 5030 YHNVIKESIQITKDPLQITKDPLIPIKNSLGPLGTAFLIVNVYSFYHLITHNQILVNNYL 4851
YHNVIKESI +ITKDPLIPI+N LGPLGTAFLI NVYSFYHLITHNQILVNNYL
Sbjct: 961 YHNVIKESI-------KITKDPLIPIENLLGPLGTAFLITNVYSFYHLITHNQILVNNYL 1013
Query: 4850 QLDNLKETFQVI----KYYLIDENEKIYNPDSCSNIIFNLNWYFIHLNYCQETSTIMSLG 4683
QLDNLK+TFQVI KYYLIDENEKIYNP CSNII NLNWYF H NYCQETSTIMSLG
Sbjct: 1014 QLDNLKQTFQVILIKFKYYLIDENEKIYNPGPCSNIILNLNWYFFHANYCQETSTIMSLG 1073
Query: 4682 QFICENRYIAQNAPYLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLI 4503
QF+CEN IAQNAP+LKSGQ+ILVQVDSVVIRSAKPYLATPGATVHGHYGEILY+GDTLI
Sbjct: 1074 QFVCENICIAQNAPHLKSGQIILVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLI 1133
Query: 4502 TFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWTFLIGA 4323
TFIYEKSRSGDITQGLPKVEQV+EVRSI SISMNLEKR+EGWNERITRILGMPW FLIGA
Sbjct: 1134 TFIYEKSRSGDITQGLPKVEQVVEVRSIHSISMNLEKRIEGWNERITRILGMPWAFLIGA 1193
Query: 4322 ELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIG 4143
ELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVF PGELIG
Sbjct: 1194 ELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIG 1253
Query: 4142 LLRAERMGRALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLK 3963
LLRAER GRALEEAVC RALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLK
Sbjct: 1254 LLRAERTGRALEEAVCCRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLK 1313
Query: 3962 GLKENVVLGGMIPVGTGLKGLVPPSKQHNKSP--LETKKNNLFEGEMRDILFHHRKLFDS 3789
GLKENVVLGG+IPVGTGLKGLVPPSKQHN+SP +ETKKNNLFEG+MRDILFHH+KLFDS
Sbjct: 1314 GLKENVVLGGLIPVGTGLKGLVPPSKQHNRSPFEVETKKNNLFEGKMRDILFHHKKLFDS 1373
Query: 3788 F 3786
F
Sbjct: 1374 F 1374
>ref|YP_009183582.1| RNA polymerase beta subunit (chloroplast) [Scutellaria insignis]
gi|949600142|gb|ALN11593.1| RNA polymerase beta subunit
(chloroplast) [Scutellaria insignis]
Length = 1401
Score = 2498 bits (6474), Expect = 0.0
Identities = 1271/1404 (90%), Positives = 1307/1404 (93%), Gaps = 10/1404 (0%)
Frame = -1
Query: 7910 MEVFMAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSIS 7731
MEV MAERANLVFHNKVIDGTAMKRLISR IDHFGMAYTSHILDQVK LGFQQATATSIS
Sbjct: 1 MEVLMAERANLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKALGFQQATATSIS 60
Query: 7730 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 7551
LGIDDLLTIPSKRWLVQDAE+QS ILEKHHH GNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKRWLVQDAEKQSFILEKHHHSGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 7550 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 7371
PNFRMTDP NPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPLNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 7370 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 7191
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 240
Query: 7190 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASW 7011
ERIFIQTLIGRVLADDIYMGTRCIATRNQDIG+ LVNRFITFRAQPIAIRTPFTCRSASW
Sbjct: 241 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGIELVNRFITFRAQPIAIRTPFTCRSASW 300
Query: 7010 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXTAEHVRAPS 6831
ICRLCYGRSPTHG LVELGEAVGIIAGQSIGEPGTQLTLR TAEHVRAPS
Sbjct: 301 ICRLCYGRSPTHGGLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPS 360
Query: 6830 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES 6651
NGKIKFNEDLVHPTRTRHGHPA LCSINLYVTIESEDIRHNVNIP QSFLLVQNDQYVES
Sbjct: 361 NGKIKFNEDLVHPTRTRHGHPALLCSINLYVTIESEDIRHNVNIPTQSFLLVQNDQYVES 420
Query: 6650 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 6471
EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYG+VHLLPKTSHLWI
Sbjct: 421 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGSVHLLPKTSHLWI 480
Query: 6470 LLGGPRGSSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQSRQKFFTSDFSGKKEDR 6291
LLGGPR SSLVSLS+HKDQDQMSAHSRSVK+RSTSNLSGTNDQ R+KFFTS FSGKKEDR
Sbjct: 481 LLGGPRRSSLVSLSIHKDQDQMSAHSRSVKKRSTSNLSGTNDQPREKFFTSAFSGKKEDR 540
Query: 6290 IPDYSDLSRIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQLLQERENELMPPSGIS 6111
IPDYSDL RIICTGRCNL+DPT+LYQNSDL SKRRRNR IIPLQ +QERENEL PPS IS
Sbjct: 541 IPDYSDLIRIICTGRCNLVDPTVLYQNSDLVSKRRRNRLIIPLQSIQERENELTPPSDIS 600
Query: 6110 IEIPINGIFRRNSIFAYIDDPRYKRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRPKY 5931
IEIPINGIFRRNSI AY+DDPRY+RKSSGITKYGTLEMHSI+KKEDLIEYRGG+EFRPKY
Sbjct: 601 IEIPINGIFRRNSILAYLDDPRYRRKSSGITKYGTLEMHSIIKKEDLIEYRGGQEFRPKY 660
Query: 5930 QMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKKRIEL 5751
QMKVDRFFFIPEEVHILPGSS IMVRNNSIIG+DTQITLNIRSRV GLVRVERKKKRIEL
Sbjct: 661 QMKVDRFFFIPEEVHILPGSSYIMVRNNSIIGIDTQITLNIRSRVAGLVRVERKKKRIEL 720
Query: 5750 KIFSGDVHFPGETDKISRHSGVLIPPGTGKQXXXXXXXXXXWIYVQRITPSKKKYFVLVR 5571
KIFSGD+HFPG+TDKISRHSGVLIPPGTGK WIYVQRITPSKK YFVLVR
Sbjct: 721 KIFSGDIHFPGKTDKISRHSGVLIPPGTGKNNSKESKKWENWIYVQRITPSKKTYFVLVR 780
Query: 5570 PVVTYEITDGITLATLFPPDLLHESDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTCLV 5391
PVVTYEITDGITL TLFPPDLL E DNV+LRVVNYILYGNGKPIRGISDTNIQLVRTCLV
Sbjct: 781 PVVTYEITDGITLGTLFPPDLLQERDNVKLRVVNYILYGNGKPIRGISDTNIQLVRTCLV 840
Query: 5390 LNWDQDKKSSSSQEARASFVEIRANGLIRHFLRIDLVKSIISYIGKRNDPXXXXXXXXXX 5211
LNWDQD+KSSSSQEARASFVEIRANGLIRHFLRIDL+KS ISYIGKRNDP
Sbjct: 841 LNWDQDRKSSSSQEARASFVEIRANGLIRHFLRIDLLKSTISYIGKRNDPSGSRLLSDNG 900
Query: 5210 XDCTNINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVK 5031
DCT INPFSS YSKARIQQPLNQNQRTIHTLLN+NTGFQSLIILSSSNCFRMGP NDVK
Sbjct: 901 SDCTKINPFSSSYSKARIQQPLNQNQRTIHTLLNKNTGFQSLIILSSSNCFRMGPLNDVK 960
Query: 5030 Y--HNVIKESIQITKDPLQITKDPLIPIKNSLGPLGTAFLIV--NVYSFYHLITHNQILV 4863
Y HNVI ++ K+ +QITKDP+IPI NSLGPLGTA LI+ NV SFYHLITHNQILV
Sbjct: 961 YHNHNVIH---KVIKESIQITKDPVIPINNSLGPLGTALLILIANVSSFYHLITHNQILV 1017
Query: 4862 NNYLQLDNLKETFQVI--KYYLIDENEKIYNPDSCSNIIFNLNWYFIHLNYCQETSTIMS 4689
NNYLQLDNLK+TFQVI KYYLIDENEKIYNPD CSNIIFNLNWYF+H NYCQETSTIMS
Sbjct: 1018 NNYLQLDNLKQTFQVIKFKYYLIDENEKIYNPDPCSNIIFNLNWYFLHPNYCQETSTIMS 1077
Query: 4688 LGQFICENRYIAQNAPYLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDT 4509
LGQFICEN IA+N P+LKSGQVILV+VDSVVIRSAKPYLATPGATVHGHYG ILY+GDT
Sbjct: 1078 LGQFICENICIAKNVPHLKSGQVILVEVDSVVIRSAKPYLATPGATVHGHYGGILYEGDT 1137
Query: 4508 LITFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWTFLI 4329
LITFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKR+EGWNERI RILGMPW FLI
Sbjct: 1138 LITFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIEGWNERIPRILGMPWAFLI 1197
Query: 4328 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGEL 4149
AELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVF PGEL
Sbjct: 1198 AAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGEL 1257
Query: 4148 IGLLRAERMGRALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDW 3969
IGLLRAERMGRALEEAVCYRA LLGITRA+LNTQSFISEASFQETARVLAKAALRGRIDW
Sbjct: 1258 IGLLRAERMGRALEEAVCYRAFLLGITRAALNTQSFISEASFQETARVLAKAALRGRIDW 1317
Query: 3968 LKGLKENVVLGGMIPVGTGLKGLVPPS--KQHNKSPL--ETKKNNLFEGEMRDILFHHRK 3801
LKGLKENVVLGGMIPVGTGLKGL+ PS KQHN+SPL ETKKNNLF GEMRDILFHHRK
Sbjct: 1318 LKGLKENVVLGGMIPVGTGLKGLMTPSKQKQHNRSPLEMETKKNNLFWGEMRDILFHHRK 1377
Query: 3800 LFDSFLSKNFHDRPEQSFIGFNDS 3729
FDSFLSKNFHDRPEQSFIG NDS
Sbjct: 1378 FFDSFLSKNFHDRPEQSFIGLNDS 1401
>gb|AKZ23934.1| RNA polymerase beta'' subunit (plastid) [Penstemon gracilis]
Length = 1389
Score = 2497 bits (6472), Expect = 0.0
Identities = 1272/1398 (90%), Positives = 1302/1398 (93%), Gaps = 4/1398 (0%)
Frame = -1
Query: 7910 MEVFMAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSIS 7731
MEV MAERANLVFHNKVIDGTAMKRLISR IDHFGMAYTSHILDQVKTLGF+QATATSIS
Sbjct: 1 MEVLMAERANLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFEQATATSIS 60
Query: 7730 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 7551
LGIDDLLTIPSKRWLV+DAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKRWLVRDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 7550 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 7371
PNFRMTDPFNPVH+MSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHMMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 7370 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 7191
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT RGISVSPRNGMMP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTARGISVSPRNGMMP 240
Query: 7190 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASW 7011
ERIFIQTLIGRVLADDIYMGTRCIATRNQDIG+GLVNRFITFR QPIAIRTPFTCRSASW
Sbjct: 241 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGIGLVNRFITFRVQPIAIRTPFTCRSASW 300
Query: 7010 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXTAEHVRAPS 6831
ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR TAEHVRAPS
Sbjct: 301 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPS 360
Query: 6830 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES 6651
NGKIKFNEDLVHPTRTRHGHPAFLCSI+LYVTIESED RHNV IPPQSFLLVQNDQYVES
Sbjct: 361 NGKIKFNEDLVHPTRTRHGHPAFLCSIDLYVTIESEDTRHNVKIPPQSFLLVQNDQYVES 420
Query: 6650 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 6471
EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI
Sbjct: 421 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 480
Query: 6470 LLGGPRGSSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQSRQKFFTSDFSGKKEDR 6291
LLGGP SSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQ + KFF SDFSGKKEDR
Sbjct: 481 LLGGPYRSSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQPKHKFFISDFSGKKEDR 540
Query: 6290 IPDYSDLSRIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQLLQERENELMPPSGIS 6111
I DYSDLSRIICTG NLIDPTILY NSDLF+KRR+NRFI+PLQL+QERENEL+PPSGIS
Sbjct: 541 IHDYSDLSRIICTG--NLIDPTILYHNSDLFAKRRKNRFILPLQLIQERENELIPPSGIS 598
Query: 6110 IEIPINGIFRRNSIFAYIDDPRYKRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRPKY 5931
IEIPINGIFRRNSI AY DDPRY+RKSSGITKYGTLEMHSIVKKEDLIEY GGKEFR KY
Sbjct: 599 IEIPINGIFRRNSILAYFDDPRYRRKSSGITKYGTLEMHSIVKKEDLIEYGGGKEFRSKY 658
Query: 5930 QMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKKRIEL 5751
Q+KVDRFFFIPEEVHILPGS SIMVRNNSI+GVDTQITLNIRSRV GLVRVERKKKRIEL
Sbjct: 659 QLKVDRFFFIPEEVHILPGSCSIMVRNNSIVGVDTQITLNIRSRVSGLVRVERKKKRIEL 718
Query: 5750 KIFSGDVHFPGETDKISRHSGV-LIPPGTGKQXXXXXXXXXXWIYVQRITPSKKKYFVLV 5574
KIFSGD+HFPGETDKISR+SGV LI PG GK WIYVQRITPSKKKYFVLV
Sbjct: 719 KIFSGDIHFPGETDKISRYSGVFLISPGAGKPNSKESKKWKNWIYVQRITPSKKKYFVLV 778
Query: 5573 RPVVTYEITDGITLATLFPPDLLHESDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTCL 5394
RPVVTYEITDGI LATLFPPDLL E DNVQLRVVNYILYGNGKPIRGISDTNIQLVRTCL
Sbjct: 779 RPVVTYEITDGINLATLFPPDLLQEWDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTCL 838
Query: 5393 VLNWDQDKKSSSSQEARASFVEIRANGLIRHFLRIDLVKSIISYIGKRNDPXXXXXXXXX 5214
VLNWDQDKKSSSS+EARASFVEIR NGLIRHFLRIDLVKS I+YIGKRNDP
Sbjct: 839 VLNWDQDKKSSSSEEARASFVEIRTNGLIRHFLRIDLVKSPIAYIGKRNDPSGSGVLSHN 898
Query: 5213 XXDCTNINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFNDV 5034
DCTNINPFSSIYSKARIQQPL+QNQRTIH LLNRNTG QSLIILSS+NCFRMGPFNDV
Sbjct: 899 RSDCTNINPFSSIYSKARIQQPLDQNQRTIHMLLNRNTGVQSLIILSSANCFRMGPFNDV 958
Query: 5033 KYHNVIKESIQITKDPLQITKDPLIPIKNSLGPLGTAFLIVNVYSFYHLITHNQILVNNY 4854
KYHNVIKESI +I KDPLIPIKN LGPLGTAF I NVYSFYHLITHNQI VNNY
Sbjct: 959 KYHNVIKESI-------KIPKDPLIPIKNLLGPLGTAFPIANVYSFYHLITHNQIFVNNY 1011
Query: 4853 LQLDNLKETFQV---IKYYLIDENEKIYNPDSCSNIIFNLNWYFIHLNYCQETSTIMSLG 4683
QL NLK+TFQV IKYYL+DENEKIYNPD SNIIFNLNWYF+H N CQETSTIMSLG
Sbjct: 1012 FQLHNLKQTFQVIKLIKYYLMDENEKIYNPDPSSNIIFNLNWYFLHPNDCQETSTIMSLG 1071
Query: 4682 QFICENRYIAQNAPYLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLI 4503
QFICEN I +NAP LKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILY+GDTLI
Sbjct: 1072 QFICENICITKNAPDLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLI 1131
Query: 4502 TFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWTFLIGA 4323
TFIYEKSRSGDITQGLPKVEQVLEVRSIDSIS+NLEKR+EGWNERITRILGMPW FLIGA
Sbjct: 1132 TFIYEKSRSGDITQGLPKVEQVLEVRSIDSISINLEKRIEGWNERITRILGMPWAFLIGA 1191
Query: 4322 ELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIG 4143
ELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIG
Sbjct: 1192 ELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIG 1251
Query: 4142 LLRAERMGRALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLK 3963
LLRAERMGRALEEAVCYRA+LLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLK
Sbjct: 1252 LLRAERMGRALEEAVCYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLK 1311
Query: 3962 GLKENVVLGGMIPVGTGLKGLVPPSKQHNKSPLETKKNNLFEGEMRDILFHHRKLFDSFL 3783
GLKENVVLGGMIPVGTGL GLV PSKQHNKSPLETKKNNLFEGEMRDILFHH+ FDSFL
Sbjct: 1312 GLKENVVLGGMIPVGTGLTGLVTPSKQHNKSPLETKKNNLFEGEMRDILFHHKNFFDSFL 1371
Query: 3782 SKNFHDRPEQSFIGFNDS 3729
SKNFHD EQSFIGFNDS
Sbjct: 1372 SKNFHDISEQSFIGFNDS 1389
>gb|AKZ23933.1| RNA polymerase beta'' subunit (plastid) [Penstemon angustifolius]
Length = 1389
Score = 2495 bits (6467), Expect = 0.0
Identities = 1272/1398 (90%), Positives = 1301/1398 (93%), Gaps = 4/1398 (0%)
Frame = -1
Query: 7910 MEVFMAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSIS 7731
MEV MAERANLVFHNKVIDGTAMKRLISR IDHFGMAYTSHILDQVKTLGF+QATATSIS
Sbjct: 1 MEVLMAERANLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFEQATATSIS 60
Query: 7730 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 7551
LGIDDLLTIPSKRWLV+DAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKRWLVRDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 7550 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 7371
PNFRMTDPFNPVH+MSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHMMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 7370 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 7191
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT RGISVSPRNGMMP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTARGISVSPRNGMMP 240
Query: 7190 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASW 7011
ERIFIQTLIGRVLADDIYMGTRCIATRNQDIG+GLVNRFITFR QPIAIRTPFTCRSASW
Sbjct: 241 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGIGLVNRFITFRVQPIAIRTPFTCRSASW 300
Query: 7010 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXTAEHVRAPS 6831
ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR TAEHVRAPS
Sbjct: 301 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPS 360
Query: 6830 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES 6651
NGKIKFNEDLVHPTRTRHGHPAFLCSI+LYVTIESED RHNV IPPQSFLLVQNDQYVES
Sbjct: 361 NGKIKFNEDLVHPTRTRHGHPAFLCSIDLYVTIESEDTRHNVKIPPQSFLLVQNDQYVES 420
Query: 6650 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 6471
EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI
Sbjct: 421 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 480
Query: 6470 LLGGPRGSSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQSRQKFFTSDFSGKKEDR 6291
LLGGP SSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQ + KFF SDFSGKKEDR
Sbjct: 481 LLGGPCRSSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQPKHKFFISDFSGKKEDR 540
Query: 6290 IPDYSDLSRIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQLLQERENELMPPSGIS 6111
I DYSDLSRIICTG NLIDPTILY NSDLF+KRR+NRFI+PLQL+QERENEL+PPSGIS
Sbjct: 541 IHDYSDLSRIICTG--NLIDPTILYHNSDLFAKRRKNRFILPLQLIQERENELIPPSGIS 598
Query: 6110 IEIPINGIFRRNSIFAYIDDPRYKRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRPKY 5931
IEIPINGIFRRNSI AY DDPRY+RKSSGITKYGTLEMHSIVKKEDLIEY GGKEF KY
Sbjct: 599 IEIPINGIFRRNSILAYFDDPRYRRKSSGITKYGTLEMHSIVKKEDLIEYGGGKEFWSKY 658
Query: 5930 QMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKKRIEL 5751
Q+KVDRFFFIPEEVHILPGS SIMVRNNSI+GVDTQITLNIRSRV GLVRVERKKKRIEL
Sbjct: 659 QLKVDRFFFIPEEVHILPGSCSIMVRNNSIVGVDTQITLNIRSRVSGLVRVERKKKRIEL 718
Query: 5750 KIFSGDVHFPGETDKISRHSGV-LIPPGTGKQXXXXXXXXXXWIYVQRITPSKKKYFVLV 5574
KIFSGD+HFPGETDKISR+SGV LI PG GK WIYVQRITPSKKKYFVLV
Sbjct: 719 KIFSGDIHFPGETDKISRYSGVFLISPGAGKPNSKESKKWKNWIYVQRITPSKKKYFVLV 778
Query: 5573 RPVVTYEITDGITLATLFPPDLLHESDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTCL 5394
RPVVTYEITDGI LATLFPPDLL E DNVQLRVVNYILYGNGKPIRGISDTNIQLVRTCL
Sbjct: 779 RPVVTYEITDGINLATLFPPDLLQEWDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTCL 838
Query: 5393 VLNWDQDKKSSSSQEARASFVEIRANGLIRHFLRIDLVKSIISYIGKRNDPXXXXXXXXX 5214
VLNWDQDKKSSSS+EARASFVEIR NGLIRHFLRIDLVKS I+YIGKRNDP
Sbjct: 839 VLNWDQDKKSSSSEEARASFVEIRTNGLIRHFLRIDLVKSPIAYIGKRNDPSGSGVLSHN 898
Query: 5213 XXDCTNINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFNDV 5034
DCTNINPFSSIYSKARIQQPL+QNQRTIH LLNRNTG QSLIILSSSNCFRMGPFNDV
Sbjct: 899 RSDCTNINPFSSIYSKARIQQPLDQNQRTIHMLLNRNTGVQSLIILSSSNCFRMGPFNDV 958
Query: 5033 KYHNVIKESIQITKDPLQITKDPLIPIKNSLGPLGTAFLIVNVYSFYHLITHNQILVNNY 4854
KYHNVIKESI +I KDPLIPIKN LGPLGTAF I NVYSFYHLITHNQI VNNY
Sbjct: 959 KYHNVIKESI-------KIPKDPLIPIKNLLGPLGTAFPIANVYSFYHLITHNQIFVNNY 1011
Query: 4853 LQLDNLKETFQV---IKYYLIDENEKIYNPDSCSNIIFNLNWYFIHLNYCQETSTIMSLG 4683
QL NLK+TFQV IKYYL+DENEKIYNPD SNIIFNLNWYF+H N CQETSTIMSLG
Sbjct: 1012 FQLHNLKQTFQVIKLIKYYLMDENEKIYNPDPSSNIIFNLNWYFLHPNDCQETSTIMSLG 1071
Query: 4682 QFICENRYIAQNAPYLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLI 4503
QFICEN I +NAP LKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILY+GDTLI
Sbjct: 1072 QFICENICITKNAPDLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLI 1131
Query: 4502 TFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWTFLIGA 4323
TFIYEKSRSGDITQGLPKVEQVLEVRSIDSIS+NLEKR+EGWNERITRILGMPW FLIGA
Sbjct: 1132 TFIYEKSRSGDITQGLPKVEQVLEVRSIDSISINLEKRIEGWNERITRILGMPWAFLIGA 1191
Query: 4322 ELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIG 4143
ELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIG
Sbjct: 1192 ELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIG 1251
Query: 4142 LLRAERMGRALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLK 3963
LLRAERMGRALEEAVCYRA+LLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLK
Sbjct: 1252 LLRAERMGRALEEAVCYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLK 1311
Query: 3962 GLKENVVLGGMIPVGTGLKGLVPPSKQHNKSPLETKKNNLFEGEMRDILFHHRKLFDSFL 3783
GLKENVVLGGMIPVGTGL GLV PSKQHNKSPLETKKNNLFEGEMRDILFHH+ FDSFL
Sbjct: 1312 GLKENVVLGGMIPVGTGLTGLVTPSKQHNKSPLETKKNNLFEGEMRDILFHHKNFFDSFL 1371
Query: 3782 SKNFHDRPEQSFIGFNDS 3729
SKNFHD EQSFIGFNDS
Sbjct: 1372 SKNFHDISEQSFIGFNDS 1389
>gb|AKJ77713.1| RNA polymerase beta'' subunit (chloroplast) [Perilla frutescens]
Length = 1398
Score = 2495 bits (6466), Expect = 0.0
Identities = 1277/1405 (90%), Positives = 1306/1405 (92%), Gaps = 11/1405 (0%)
Frame = -1
Query: 7910 MEVFMAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSIS 7731
MEV MAERANLVFHNK IDGTAMKRLISR IDHFGMAYTSHILDQVKTLGFQQATATSIS
Sbjct: 1 MEVLMAERANLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 60
Query: 7730 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 7551
LGIDDLLTIPSKRWLVQDAEQQS ILEKHHH GNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKRWLVQDAEQQSFILEKHHHCGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 7550 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 7371
PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 7370 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 7191
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSP NGMMP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPENGMMP 240
Query: 7190 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASW 7011
ERIFIQTLIGRVLADDIY+GTRCI+TRNQDIG+GLVNRFITFRAQPIAIRTPFTCRSASW
Sbjct: 241 ERIFIQTLIGRVLADDIYIGTRCISTRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASW 300
Query: 7010 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXTAEHVRAPS 6831
ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR TAEHVRAPS
Sbjct: 301 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPS 360
Query: 6830 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES 6651
NGKIKFNEDLVHPTRTRHGHPAFLCSINL VTIESEDIRHNVNIPPQSFLLVQNDQYVES
Sbjct: 361 NGKIKFNEDLVHPTRTRHGHPAFLCSINLSVTIESEDIRHNVNIPPQSFLLVQNDQYVES 420
Query: 6650 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 6471
EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI
Sbjct: 421 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 480
Query: 6470 LLGGPRGSSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQSRQKFFTSDFSGKKEDR 6291
LLG PR SSLVSLS+HKDQDQMSAHSRSVKR+STSN SGTND SR+KFFTSDFS KKE+R
Sbjct: 481 LLGEPRKSSLVSLSIHKDQDQMSAHSRSVKRKSTSNFSGTNDPSREKFFTSDFSDKKENR 540
Query: 6290 IPDYSDLSRIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQLLQERENELMPPSGIS 6111
I DYSDLSRII TGRCNL+DPTILYQNSDLFSKRRRNRFIIPLQ +Q+RENEL PP+ I
Sbjct: 541 ISDYSDLSRIIGTGRCNLVDPTILYQNSDLFSKRRRNRFIIPLQSIQKRENELTPPADIL 600
Query: 6110 IEIPINGIFRRNSIFAYIDDPRYKRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRPKY 5931
IEIPING+FRRNSI AY+DDPRY+RKSSGITKYGTLEMHSIVKKEDLIEYRGGKEF+PKY
Sbjct: 601 IEIPINGVFRRNSILAYLDDPRYRRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFKPKY 660
Query: 5930 QMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKKRIEL 5751
QMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNI+SRVGGLVRVERKKKRIEL
Sbjct: 661 QMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIKSRVGGLVRVERKKKRIEL 720
Query: 5750 KIFSGDVHFPGETDKISRHSGVLIPPGTGKQXXXXXXXXXXWIYVQRITPSKKKYFVLVR 5571
KIFSGD+HFPGETDKISRHSGVLIPPG GKQ WIYVQRITPSKKKYFVLVR
Sbjct: 721 KIFSGDIHFPGETDKISRHSGVLIPPGAGKQNSKESKKWKNWIYVQRITPSKKKYFVLVR 780
Query: 5570 PVVTYEITDGITLATLFPPDLLHESDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTCLV 5391
PVVTYEITDGITL TLFPPDLL E DNV+LRVVNYILYGNGKPIRGI DTNIQLVRTCLV
Sbjct: 781 PVVTYEITDGITLGTLFPPDLLQERDNVKLRVVNYILYGNGKPIRGIYDTNIQLVRTCLV 840
Query: 5390 LNWDQDKKSSSSQEARASFVEIRANGLIRHFLRIDLVKSIISYIGKRNDPXXXXXXXXXX 5211
LNWDQDKKSSSSQEARASFVEIRANGLIRHFLRIDL KS I YIGKRN+P
Sbjct: 841 LNWDQDKKSSSSQEARASFVEIRANGLIRHFLRIDLQKSTILYIGKRNNPPGSGLLPDNG 900
Query: 5210 XDCTNINPFSSIYSKARIQQPL---NQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFN 5040
DCTNINPFSSIYSK RIQQ L NQNQRTIHTLLNRN GFQSLIILSSSNCFRMGPFN
Sbjct: 901 LDCTNINPFSSIYSKVRIQQLLNQNNQNQRTIHTLLNRNKGFQSLIILSSSNCFRMGPFN 960
Query: 5039 DVKY--HNVIKESIQITKDPLQITKDPLIPIKNSLGPLGTAFLIVNVYSFYHLITHNQIL 4866
DVKY HN IKESI QITKDP+IPIKNS GPLGTAFLI NVYSFYHLITHNQIL
Sbjct: 961 DVKYHNHNAIKESI-------QITKDPVIPIKNSPGPLGTAFLIANVYSFYHLITHNQIL 1013
Query: 4865 VNNYLQLDNLKETFQVI--KYYLIDENEKIYNPDSCSNIIFNLNWYFIHLNYCQETSTIM 4692
+NNYLQLDNLK+TFQ+I KYYLIDENEKI NP CSNIIFNL+ YF+H NYCQE STIM
Sbjct: 1014 LNNYLQLDNLKQTFQIIKFKYYLIDENEKIDNPRPCSNIIFNLSGYFLHPNYCQEKSTIM 1073
Query: 4691 SLGQFICENRYIAQNAPY--LKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQ 4518
SLGQFICEN YIA+NAP+ LKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILY+
Sbjct: 1074 SLGQFICENIYIAKNAPHLKLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYE 1133
Query: 4517 GDTLITFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWT 4338
GDTLITFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPW
Sbjct: 1134 GDTLITFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWA 1193
Query: 4337 FLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLP 4158
FLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVF P
Sbjct: 1194 FLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSP 1253
Query: 4157 GELIGLLRAERMGRALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRGR 3978
GELIGLLRAERMGRALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRGR
Sbjct: 1254 GELIGLLRAERMGRALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRGR 1313
Query: 3977 IDWLKGLKENVVLGGMIPVGTGLKGLVPPSKQHNKSPL--ETKKNNLFEGEMRDILFHHR 3804
IDWLKGLKENVVLGGMIPVGTGLKGLVP SKQHN+SPL E KKNNLFEGEMRDILFHHR
Sbjct: 1314 IDWLKGLKENVVLGGMIPVGTGLKGLVPSSKQHNRSPLEMEIKKNNLFEGEMRDILFHHR 1373
Query: 3803 KLFDSFLSKNFHDRPEQSFIGFNDS 3729
KLFDS SKNFHDRP QSFI NDS
Sbjct: 1374 KLFDSLFSKNFHDRPNQSFIRVNDS 1398
>ref|YP_009162251.1| RNA polymerase beta subunit-2 (chloroplast) [Scutellaria baicalensis]
gi|827345829|gb|AKJ77130.1| RNA polymerase beta subunit-2
(chloroplast) [Scutellaria baicalensis]
Length = 1401
Score = 2491 bits (6456), Expect = 0.0
Identities = 1268/1404 (90%), Positives = 1303/1404 (92%), Gaps = 10/1404 (0%)
Frame = -1
Query: 7910 MEVFMAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSIS 7731
MEV MAERAN VFHNKVIDGTAMKRLISR IDHFGMAYTSHILDQVK LGFQQATATSIS
Sbjct: 1 MEVLMAERANPVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKALGFQQATATSIS 60
Query: 7730 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 7551
LGIDDLLTIPSKRWLVQDAEQQS ILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKRWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 7550 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 7371
PNFRMTDP NPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPLNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 7370 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 7191
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 240
Query: 7190 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASW 7011
ERIFIQTLIGRVLADDIYMGTRCIATRNQDIG+ LVNRFITFRAQPIAIRTPFTCRSASW
Sbjct: 241 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGIELVNRFITFRAQPIAIRTPFTCRSASW 300
Query: 7010 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXTAEHVRAPS 6831
ICRLCYGRSPTHG LVELGEAVGIIAGQSIGEPGTQLTLR TAEHVRAPS
Sbjct: 301 ICRLCYGRSPTHGGLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPS 360
Query: 6830 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES 6651
NGKIKFNEDLVHPTRTRHGHPA LCSINLYVTIESEDIRHNVNIP QSFLLVQNDQYVES
Sbjct: 361 NGKIKFNEDLVHPTRTRHGHPALLCSINLYVTIESEDIRHNVNIPTQSFLLVQNDQYVES 420
Query: 6650 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 6471
EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYG+VHLLPKTSHLWI
Sbjct: 421 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGSVHLLPKTSHLWI 480
Query: 6470 LLGGPRGSSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQSRQKFFTSDFSGKKEDR 6291
LLGGPR SSLVSLS+HKDQDQMSAHSRSVK+RSTSNLSG NDQ R+KFFTS FSGKKEDR
Sbjct: 481 LLGGPRRSSLVSLSIHKDQDQMSAHSRSVKKRSTSNLSGRNDQPREKFFTSAFSGKKEDR 540
Query: 6290 IPDYSDLSRIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQLLQERENELMPPSGIS 6111
IPDYSDL RIICTG CNL+DPT+LYQNSDL SKRRRNRFIIPLQ +QERENEL PPS I
Sbjct: 541 IPDYSDLIRIICTGHCNLVDPTVLYQNSDLVSKRRRNRFIIPLQSIQERENELTPPSDIP 600
Query: 6110 IEIPINGIFRRNSIFAYIDDPRYKRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRPKY 5931
IEIPINGIFRRNSI AY+DDPRY+RKSSGITKYGTLEMHSI+KKEDLIEY G +EFRPKY
Sbjct: 601 IEIPINGIFRRNSILAYLDDPRYRRKSSGITKYGTLEMHSIIKKEDLIEYGGAQEFRPKY 660
Query: 5930 QMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKKRIEL 5751
QMKVDRFFFIPEEVHILPGSS IMVRNNSIIG+DTQITLNIRSRV GLVRVERKKKRIEL
Sbjct: 661 QMKVDRFFFIPEEVHILPGSSYIMVRNNSIIGIDTQITLNIRSRVAGLVRVERKKKRIEL 720
Query: 5750 KIFSGDVHFPGETDKISRHSGVLIPPGTGKQXXXXXXXXXXWIYVQRITPSKKKYFVLVR 5571
KIFSGD+HFPG+TDKISRHSGVLIPPGTGK+ WIYVQRITPSKK YFVLVR
Sbjct: 721 KIFSGDIHFPGKTDKISRHSGVLIPPGTGKKNSKESKKWENWIYVQRITPSKKTYFVLVR 780
Query: 5570 PVVTYEITDGITLATLFPPDLLHESDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTCLV 5391
PVVTYEITDGITL TLFPPDLL E DNV+LRVVNYILYGNGKPIRGI DTNIQLVRTCLV
Sbjct: 781 PVVTYEITDGITLGTLFPPDLLQERDNVKLRVVNYILYGNGKPIRGIYDTNIQLVRTCLV 840
Query: 5390 LNWDQDKKSSSSQEARASFVEIRANGLIRHFLRIDLVKSIISYIGKRNDPXXXXXXXXXX 5211
LNWDQD+KSSSSQEARASFVEIRANGLIRHFLRIDL+KS ISYIGKRNDP
Sbjct: 841 LNWDQDRKSSSSQEARASFVEIRANGLIRHFLRIDLLKSTISYIGKRNDPSGSRLLSDNG 900
Query: 5210 XDCTNINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVK 5031
DCT INPFSSIYSK RIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRM P NDVK
Sbjct: 901 SDCTKINPFSSIYSKTRIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMSPLNDVK 960
Query: 5030 Y--HNVIKESIQITKDPLQITKDPLIPIKNSLGPLGTAFLIV--NVYSFYHLITHNQILV 4863
Y HNVI ++ K+ +QITKDP+IPIKNSLGPLGTA LI+ NV SFYHLITHNQILV
Sbjct: 961 YHNHNVIH---KVIKESIQITKDPVIPIKNSLGPLGTALLILIANVSSFYHLITHNQILV 1017
Query: 4862 NNYLQLDNLKETFQVI--KYYLIDENEKIYNPDSCSNIIFNLNWYFIHLNYCQETSTIMS 4689
NNYLQLDNLK+TFQVI KYYLIDENEKIYNPD CSNIIFNLNWYF+H NYCQETSTIMS
Sbjct: 1018 NNYLQLDNLKQTFQVIKFKYYLIDENEKIYNPDPCSNIIFNLNWYFLHPNYCQETSTIMS 1077
Query: 4688 LGQFICENRYIAQNAPYLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDT 4509
LGQFICEN IA+NAP+LKSGQVILV+VDSVVIRSAKPYLATPGATVHGHYG ILY+GDT
Sbjct: 1078 LGQFICENICIAKNAPHLKSGQVILVEVDSVVIRSAKPYLATPGATVHGHYGGILYEGDT 1137
Query: 4508 LITFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWTFLI 4329
LITFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLE R+EGWNERI RILGMPW FLI
Sbjct: 1138 LITFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLENRIEGWNERIPRILGMPWAFLI 1197
Query: 4328 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGEL 4149
AELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVF PGEL
Sbjct: 1198 AAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGEL 1257
Query: 4148 IGLLRAERMGRALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDW 3969
IGLLRAERMGRALEEAVCYRA LLGITRA+LNTQSFISEASFQETARVLAKAALRGRIDW
Sbjct: 1258 IGLLRAERMGRALEEAVCYRAFLLGITRAALNTQSFISEASFQETARVLAKAALRGRIDW 1317
Query: 3968 LKGLKENVVLGGMIPVGTGLKGLVPPS--KQHNKSPL--ETKKNNLFEGEMRDILFHHRK 3801
LKGLKENVVLGGMIPVGTGLKGL+ PS KQHN+SPL ETKKNNLF GEMRDILFHHRK
Sbjct: 1318 LKGLKENVVLGGMIPVGTGLKGLMTPSKQKQHNRSPLEMETKKNNLFGGEMRDILFHHRK 1377
Query: 3800 LFDSFLSKNFHDRPEQSFIGFNDS 3729
FDSFLSKNFHDRPEQSFIG NDS
Sbjct: 1378 FFDSFLSKNFHDRPEQSFIGLNDS 1401
>ref|YP_008815927.1| RNA polymerase beta'' subunit (chloroplast) [Lindenbergia
philippensis] gi|557136853|emb|CDI43908.1| RNA polymerase
beta'' subunit (chloroplast) [Lindenbergia philippensis]
Length = 1368
Score = 2489 bits (6451), Expect = 0.0
Identities = 1267/1373 (92%), Positives = 1292/1373 (94%), Gaps = 2/1373 (0%)
Frame = -1
Query: 7898 MAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 7719
MAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSISLGID
Sbjct: 1 MAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 60
Query: 7718 DLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 7539
DLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61 DLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
Query: 7538 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 7359
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
Query: 7358 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMPERIF 7179
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMPERIF
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMPERIF 240
Query: 7178 IQTLIGRVLADDIYMGTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASWICRL 6999
IQTLIGRVLADDIY+GTRCIATRNQDIG+GLVNRFITFRAQPIAIRTPFTCRSASWICRL
Sbjct: 241 IQTLIGRVLADDIYIGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASWICRL 300
Query: 6998 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXTAEHVRAPSNGKI 6819
CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR TAEHVRAPSNGKI
Sbjct: 301 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKI 360
Query: 6818 KFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVESEQVI 6639
KFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVESEQVI
Sbjct: 361 KFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVESEQVI 420
Query: 6638 AEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWILLGG 6459
AEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWILLGG
Sbjct: 421 AEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWILLGG 480
Query: 6458 PRGSSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQSRQKFFTSDFSG--KKEDRIP 6285
PR SSLVSLSLHKDQDQ SA+SRSVKRR TSNLSG ND+ RQKFFTS FSG KKEDRIP
Sbjct: 481 PRRSSLVSLSLHKDQDQTSAYSRSVKRRFTSNLSGPNDKPRQKFFTSGFSGKDKKEDRIP 540
Query: 6284 DYSDLSRIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQLLQERENELMPPSGISIE 6105
DYS L R + TGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQ +QER ++ M PSGISIE
Sbjct: 541 DYSALRRSLFTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQSIQERADKRMSPSGISIE 600
Query: 6104 IPINGIFRRNSIFAYIDDPRYKRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRPKYQM 5925
IPINGI RR SI AY DDPRY+RKSSGITKYGTLEMHSI+KKEDLIEYRGGKEFRPKYQ
Sbjct: 601 IPINGILRRKSILAYFDDPRYRRKSSGITKYGTLEMHSILKKEDLIEYRGGKEFRPKYQT 660
Query: 5924 KVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKKRIELKI 5745
+VDRFFFIPEEVHILPGSSSIMVRNNSI+GVDTQITLNIRSRVGGLVRVERKKKRIELKI
Sbjct: 661 QVDRFFFIPEEVHILPGSSSIMVRNNSIVGVDTQITLNIRSRVGGLVRVERKKKRIELKI 720
Query: 5744 FSGDVHFPGETDKISRHSGVLIPPGTGKQXXXXXXXXXXWIYVQRITPSKKKYFVLVRPV 5565
FSGD+HFPGETDKISRHSGVLIPPGTGKQ WIYVQRITPSKKKYFVLVRPV
Sbjct: 721 FSGDIHFPGETDKISRHSGVLIPPGTGKQNSKESKKWKNWIYVQRITPSKKKYFVLVRPV 780
Query: 5564 VTYEITDGITLATLFPPDLLHESDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTCLVLN 5385
VTYEITDGITLATLFPPDL E DNVQL+VVNYILYGNGKPIRGISD NIQLVRTCLVLN
Sbjct: 781 VTYEITDGITLATLFPPDLFQERDNVQLQVVNYILYGNGKPIRGISDKNIQLVRTCLVLN 840
Query: 5384 WDQDKKSSSSQEARASFVEIRANGLIRHFLRIDLVKSIISYIGKRNDPXXXXXXXXXXXD 5205
W Q KKSSSSQEARASFVEIR+NGLIRHFLRIDLVKSIISYIGKRNDP D
Sbjct: 841 WHQGKKSSSSQEARASFVEIRSNGLIRHFLRIDLVKSIISYIGKRNDPSGSGLLSDNGSD 900
Query: 5204 CTNINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVKYH 5025
CTNINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFND KYH
Sbjct: 901 CTNINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFNDGKYH 960
Query: 5024 NVIKESIQITKDPLQITKDPLIPIKNSLGPLGTAFLIVNVYSFYHLITHNQILVNNYLQL 4845
NVIKESI +ITKDPLIPIKNSLG LGTAFLI NVYSFYHLITHNQILVNNYLQL
Sbjct: 961 NVIKESI-------KITKDPLIPIKNSLGLLGTAFLIANVYSFYHLITHNQILVNNYLQL 1013
Query: 4844 DNLKETFQVIKYYLIDENEKIYNPDSCSNIIFNLNWYFIHLNYCQETSTIMSLGQFICEN 4665
D +TFQVIKYYLIDENEKIYNPD CSNIIFNLNWYF+H NYCQETSTIM LGQFICEN
Sbjct: 1014 D---QTFQVIKYYLIDENEKIYNPDPCSNIIFNLNWYFLHPNYCQETSTIMGLGQFICEN 1070
Query: 4664 RYIAQNAPYLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITFIYEK 4485
IA+NAP+LKSGQVILVQVDSVVIRSAKPYLATPGATVHGH+G+ILY+GDTLITFIYEK
Sbjct: 1071 ICIAKNAPHLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHFGKILYEGDTLITFIYEK 1130
Query: 4484 SRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWTFLIGAELTIVQ 4305
SRSGDITQGLPKVEQVLEVRS+DSISMNLEKRVEGWNE ITRILGMPWTFLIGAELTIVQ
Sbjct: 1131 SRSGDITQGLPKVEQVLEVRSVDSISMNLEKRVEGWNEHITRILGMPWTFLIGAELTIVQ 1190
Query: 4304 SRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLLRAER 4125
SRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVF PGELIGLLRAER
Sbjct: 1191 SRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAER 1250
Query: 4124 MGRALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 3945
GRALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV
Sbjct: 1251 TGRALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 1310
Query: 3944 VLGGMIPVGTGLKGLVPPSKQHNKSPLETKKNNLFEGEMRDILFHHRKLFDSF 3786
VLGGMIPVGTGLKGLV PSKQHNKSPLETKKNNLFEGEM+DILFHHRKLFDSF
Sbjct: 1311 VLGGMIPVGTGLKGLVLPSKQHNKSPLETKKNNLFEGEMKDILFHHRKLFDSF 1363
>ref|YP_009110592.1| RNA polymerase beta'' chain (chloroplast) [Hesperelaea palmeri]
gi|725798276|emb|CED79752.1| RNA polymerase beta'' chain
(chloroplast) [Hesperelaea palmeri]
Length = 1394
Score = 2480 bits (6428), Expect = 0.0
Identities = 1272/1401 (90%), Positives = 1301/1401 (92%), Gaps = 7/1401 (0%)
Frame = -1
Query: 7910 MEVFMAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSIS 7731
MEV MAERANLVFHNKVIDGTAMKRLISR IDHFGMAYTSHILDQVKTLGF QATATSIS
Sbjct: 1 MEVLMAERANLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFHQATATSIS 60
Query: 7730 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 7551
LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 7550 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 7371
PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 7370 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 7191
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT+RGISVSPRNGMMP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGMMP 240
Query: 7190 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASW 7011
ERI IQTL+GRVLADDIY GTRCIA+RNQDIG+GLVNRFITFRAQPI+IRTPFTCRSASW
Sbjct: 241 ERILIQTLMGRVLADDIYTGTRCIASRNQDIGIGLVNRFITFRAQPISIRTPFTCRSASW 300
Query: 7010 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXTAEHVRAPS 6831
ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR TAEHVRAPS
Sbjct: 301 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPS 360
Query: 6830 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES 6651
NGKIKFNEDLVHPTRTRHGHPAFLCSI+LYVTIESEDI HNVNIP +SFLLVQNDQYVES
Sbjct: 361 NGKIKFNEDLVHPTRTRHGHPAFLCSIDLYVTIESEDILHNVNIPSKSFLLVQNDQYVES 420
Query: 6650 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 6471
EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYH PEFTYGNVHLLPKTSHLWI
Sbjct: 421 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHPPEFTYGNVHLLPKTSHLWI 480
Query: 6470 LLGGPRGSSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQSRQKFFTSDFSG--KKE 6297
LLGGP SSLVSLSLHKDQDQ++AHSRSVKRR TSNLS TND RQK F+S F G KKE
Sbjct: 481 LLGGPCRSSLVSLSLHKDQDQINAHSRSVKRRYTSNLSETNDPERQKLFSSYFYGKKKKE 540
Query: 6296 DRIPDYSDLSRIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQLLQERENELMPPSG 6117
DRI DYSDL+RI C GRCNLI PTIL+QNSDLFSKRRRNRFIIPLQ +QERENELMP SG
Sbjct: 541 DRISDYSDLNRIRCNGRCNLIYPTILHQNSDLFSKRRRNRFIIPLQSIQERENELMPRSG 600
Query: 6116 ISIEIPINGIFRRNSIFAYIDDPRYKRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRP 5937
ISIEIP NGIFRRNSI AY DDPRY+RKSSGITKYGT+EMHSIVKKEDLIEYRG K FRP
Sbjct: 601 ISIEIPPNGIFRRNSILAYFDDPRYRRKSSGITKYGTIEMHSIVKKEDLIEYRGVKAFRP 660
Query: 5936 KYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKKRI 5757
KYQMKVDRFFFIPEEVHILPGSSSIMVRNNS+IGVDTQITLNIRSRVGG VRVERKKKRI
Sbjct: 661 KYQMKVDRFFFIPEEVHILPGSSSIMVRNNSLIGVDTQITLNIRSRVGGFVRVERKKKRI 720
Query: 5756 ELKIFSGDVHFPGETDKISRHSGVLIPPGTGKQXXXXXXXXXXWIYVQRITPSKKKYFVL 5577
ELKIFSGD+HFPGETDKISRHSGVLIPPGTGKQ WIYVQRITPSKKKYFVL
Sbjct: 721 ELKIFSGDIHFPGETDKISRHSGVLIPPGTGKQNSKESKKWKNWIYVQRITPSKKKYFVL 780
Query: 5576 VRPVVTYEITDGITLATLFPPDLLHESDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTC 5397
VR VVTYEITDGI LATLFPPDLL E DNVQLRVVNYILYGNGKPIRGISDT+IQLVRTC
Sbjct: 781 VRLVVTYEITDGINLATLFPPDLLQERDNVQLRVVNYILYGNGKPIRGISDTDIQLVRTC 840
Query: 5396 LVLNWDQD-KKSSSSQEARASFVEIRANGLIRHFLRIDLVKSIISYIGKRNDPXXXXXXX 5220
LVLNWDQD KKSSSS+EARASFVEIR NGLIRHFLRIDLVKS ISYIGKRNDP
Sbjct: 841 LVLNWDQDKKKSSSSEEARASFVEIRTNGLIRHFLRIDLVKSPISYIGKRNDPSGSGLLS 900
Query: 5219 XXXXDCTNINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFN 5040
DCTNINPFSSIYSKARIQQ LNQNQ TIHTLLNRNTGFQSLIILSSSNCFRMGPFN
Sbjct: 901 DNGSDCTNINPFSSIYSKARIQQSLNQNQGTIHTLLNRNTGFQSLIILSSSNCFRMGPFN 960
Query: 5039 DV-KYHNVIKESIQITKDPLQITKDPLIPIKNSLGPLGTAFLIVNVYSFYHLITHNQILV 4863
DV KYHNVIKESI QITKDP IPIKNSLGP GTAF IVN YSFYHLITHNQILV
Sbjct: 961 DVIKYHNVIKESI-------QITKDPRIPIKNSLGPFGTAFPIVNFYSFYHLITHNQILV 1013
Query: 4862 NNYLQLDNLKETFQVIKYYLIDENEKIYNPDSCSNII---FNLNWYFIHLNYCQETSTIM 4692
NNYLQLDNLK+TFQVIKYYL+DENEKIYNP+ SNII FNLNWYF+H NYCQETSTI+
Sbjct: 1014 NNYLQLDNLKQTFQVIKYYLMDENEKIYNPEPGSNIILNPFNLNWYFLHHNYCQETSTII 1073
Query: 4691 SLGQFICENRYIAQNAPYLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGD 4512
SLGQFICEN IA+NAP+LKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILY+GD
Sbjct: 1074 SLGQFICENVCIAKNAPHLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGD 1133
Query: 4511 TLITFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWTFL 4332
TLITFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPW FL
Sbjct: 1134 TLITFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWGFL 1193
Query: 4331 IGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGE 4152
IGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVF PGE
Sbjct: 1194 IGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGE 1253
Query: 4151 LIGLLRAERMGRALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRID 3972
LIGLLRAERMGRALEEAVCYRA+LLGITRASLNTQSFISEASFQETARVLAKAALRGRID
Sbjct: 1254 LIGLLRAERMGRALEEAVCYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRID 1313
Query: 3971 WLKGLKENVVLGGMIPVGTGLKGLVPPSKQHNKSPLETKKNNLFEGEMRDILFHHRKLFD 3792
WLKGLKENVVLGGMIP+GTGLKGLVPPSKQ N S LETKKNNLFEGEMRDILFHHRKLFD
Sbjct: 1314 WLKGLKENVVLGGMIPLGTGLKGLVPPSKQDNNSLLETKKNNLFEGEMRDILFHHRKLFD 1373
Query: 3791 SFLSKNFHDRPEQSFIGFNDS 3729
S LSKNFHD EQSFIGFNDS
Sbjct: 1374 SCLSKNFHDTSEQSFIGFNDS 1394
>ref|YP_008964857.1| RNA polymerase beta'' subunit (chloroplast) [Schwalbea americana]
gi|560176690|emb|CDJ38609.1| RNA polymerase beta''
subunit (chloroplast) [Schwalbea americana]
Length = 1382
Score = 2480 bits (6427), Expect = 0.0
Identities = 1259/1389 (90%), Positives = 1291/1389 (92%)
Frame = -1
Query: 7898 MAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 7719
MAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSISLGID
Sbjct: 1 MAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 60
Query: 7718 DLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 7539
DLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61 DLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
Query: 7538 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 7359
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
Query: 7358 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMPERIF 7179
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPR GMMPERIF
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRKGMMPERIF 240
Query: 7178 IQTLIGRVLADDIYMGTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASWICRL 6999
IQTLIGRVLADDIY+GTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASWICRL
Sbjct: 241 IQTLIGRVLADDIYIGTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASWICRL 300
Query: 6998 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXTAEHVRAPSNGKI 6819
CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR AE VRAPSNGKI
Sbjct: 301 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGAAEQVRAPSNGKI 360
Query: 6818 KFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVESEQVI 6639
KFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVESEQVI
Sbjct: 361 KFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVESEQVI 420
Query: 6638 AEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWILLGG 6459
AEIRAGTST NFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPK SHLWILLGG
Sbjct: 421 AEIRAGTSTWNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKPSHLWILLGG 480
Query: 6458 PRGSSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQSRQKFFTSDFSGKKEDRIPDY 6279
PR SSLVSLSLHKDQDQM AHS SVKRRSTSNLSGT DQSR+KFFTSDF GKKEDRIPDY
Sbjct: 481 PRRSSLVSLSLHKDQDQMRAHSPSVKRRSTSNLSGTTDQSREKFFTSDFGGKKEDRIPDY 540
Query: 6278 SDLSRIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQLLQERENELMPPSGISIEIP 6099
SDLSR ICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPL +QER NELM PSGISIEIP
Sbjct: 541 SDLSRRICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLHSIQERANELMSPSGISIEIP 600
Query: 6098 INGIFRRNSIFAYIDDPRYKRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRPKYQMKV 5919
NGIFRRNSI AY DDPRY+RKS GITKYGTLEMHSIVKKEDLIEYRGG+EF+PK QM+V
Sbjct: 601 TNGIFRRNSILAYFDDPRYRRKSPGITKYGTLEMHSIVKKEDLIEYRGGQEFKPKSQMQV 660
Query: 5918 DRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKKRIELKIFS 5739
DRFFFIPEEVHILP SSSIMVRNNS+IGVDTQITLNIRSRVGGLVRVE KKKRI+LKIFS
Sbjct: 661 DRFFFIPEEVHILPESSSIMVRNNSLIGVDTQITLNIRSRVGGLVRVEIKKKRIQLKIFS 720
Query: 5738 GDVHFPGETDKISRHSGVLIPPGTGKQXXXXXXXXXXWIYVQRITPSKKKYFVLVRPVVT 5559
GD+HFPG+TDKISRHSG+LIPPGTGKQ I VQ ITPSKKKYFV +RP++T
Sbjct: 721 GDIHFPGKTDKISRHSGLLIPPGTGKQTSKESKKWKNLIDVQWITPSKKKYFVWIRPIIT 780
Query: 5558 YEITDGITLATLFPPDLLHESDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTCLVLNWD 5379
YEITDGI LATLFPPDLL E D+VQL+VVNYILYGNGKPIR ISDTNIQLVRTCLVLNWD
Sbjct: 781 YEITDGIPLATLFPPDLLQERDDVQLQVVNYILYGNGKPIRRISDTNIQLVRTCLVLNWD 840
Query: 5378 QDKKSSSSQEARASFVEIRANGLIRHFLRIDLVKSIISYIGKRNDPXXXXXXXXXXXDCT 5199
QDKKSSSSQEARASFVEIRANGLIRHFLRIDLV+SIISYIGKRNDP DCT
Sbjct: 841 QDKKSSSSQEARASFVEIRANGLIRHFLRIDLVQSIISYIGKRNDPLGFGLLSDNRSDCT 900
Query: 5198 NINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVKYHNV 5019
NINPFSSIYSKARIQQPL NQRTIHTLLNRNTGFQSLIILS+ NCFRMGPF + KYHNV
Sbjct: 901 NINPFSSIYSKARIQQPLPPNQRTIHTLLNRNTGFQSLIILSAYNCFRMGPFKEGKYHNV 960
Query: 5018 IKESIQITKDPLQITKDPLIPIKNSLGPLGTAFLIVNVYSFYHLITHNQILVNNYLQLDN 4839
IKESI +ITKDPL+PIKN LGPLGTAF + NVYSFY+LITHNQILVNNYLQLDN
Sbjct: 961 IKESI-------KITKDPLLPIKNLLGPLGTAFRMANVYSFYYLITHNQILVNNYLQLDN 1013
Query: 4838 LKETFQVIKYYLIDENEKIYNPDSCSNIIFNLNWYFIHLNYCQETSTIMSLGQFICENRY 4659
LK+TFQVIKYYLIDENEKIYNPD SNIIFNLNWYF+H YCQETSTIMSLGQFICEN
Sbjct: 1014 LKQTFQVIKYYLIDENEKIYNPDPRSNIIFNLNWYFLHPKYCQETSTIMSLGQFICENIC 1073
Query: 4658 IAQNAPYLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITFIYEKSR 4479
IA+N P+LKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEIL +GDTLITFIYEKSR
Sbjct: 1074 IAKNTPHLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILSEGDTLITFIYEKSR 1133
Query: 4478 SGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWTFLIGAELTIVQSR 4299
SGDITQGLPKVEQVLEVRS+DSISMNLEKRVE WNERI RILGMPWTFLIGAELTIVQSR
Sbjct: 1134 SGDITQGLPKVEQVLEVRSLDSISMNLEKRVEDWNERIKRILGMPWTFLIGAELTIVQSR 1193
Query: 4298 ISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLLRAERMG 4119
ISLVNKIQKVYRSQGVQIHNRHIEIIVRQITS+VLVSEDGMSNVF PGELIGLLRAERMG
Sbjct: 1194 ISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSRVLVSEDGMSNVFSPGELIGLLRAERMG 1253
Query: 4118 RALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVL 3939
RALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVL
Sbjct: 1254 RALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVL 1313
Query: 3938 GGMIPVGTGLKGLVPPSKQHNKSPLETKKNNLFEGEMRDILFHHRKLFDSFLSKNFHDRP 3759
GGMIPVGTGLKGL+ PSKQH KSPLETKKNNLF G MRDILFHHRK F S KNFHDRP
Sbjct: 1314 GGMIPVGTGLKGLILPSKQHTKSPLETKKNNLFGGGMRDILFHHRKFF-SLKEKNFHDRP 1372
Query: 3758 EQSFIGFND 3732
EQSFI FND
Sbjct: 1373 EQSFIEFND 1381
>gb|AKZ23930.1| RNA polymerase beta'' subunit (plastid) [Monarda fistulosa var.
mollis]
Length = 1399
Score = 2479 bits (6426), Expect = 0.0
Identities = 1269/1406 (90%), Positives = 1300/1406 (92%), Gaps = 12/1406 (0%)
Frame = -1
Query: 7910 MEVFMAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSIS 7731
MEV MAERANLVFHNKVIDGTAMKRLISR IDHFGMAYTSHILDQVK LGFQQATATSIS
Sbjct: 1 MEVLMAERANLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKALGFQQATATSIS 60
Query: 7730 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 7551
LGIDDLLTIPSKRWLVQDAEQQS ILEKHHH GNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKRWLVQDAEQQSFILEKHHHCGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 7550 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 7371
PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 7370 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 7191
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTV GISVSPRNGMMP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVHGISVSPRNGMMP 240
Query: 7190 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASW 7011
ERIFIQTLIGRVLADDIYMGTRCIATRNQDIG+GLVNRFITFRAQ IAIRTPFTCRSASW
Sbjct: 241 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGIGLVNRFITFRAQSIAIRTPFTCRSASW 300
Query: 7010 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXTAEHVRAPS 6831
ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR TAEHVRAPS
Sbjct: 301 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPS 360
Query: 6830 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES 6651
NGKIKFNEDL+HPTRTRHGHPAFLCSINLYVTIESED RHNVNIPPQSFLLVQNDQYVES
Sbjct: 361 NGKIKFNEDLLHPTRTRHGHPAFLCSINLYVTIESEDSRHNVNIPPQSFLLVQNDQYVES 420
Query: 6650 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 6471
EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVY+APEFTYGNVHLLPKTSHLWI
Sbjct: 421 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYNAPEFTYGNVHLLPKTSHLWI 480
Query: 6470 LLGGPRGSSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQSRQKFFTSDFSGKKEDR 6291
LLG PR SSLVSLS+HKDQDQM+AHS SVKR S SNLSGTND SR+K FTS+FS KKEDR
Sbjct: 481 LLGEPRRSSLVSLSIHKDQDQMNAHSCSVKRNSVSNLSGTNDPSREKLFTSNFSDKKEDR 540
Query: 6290 IPDYSDLSRIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQLL--QERENELMPPSG 6117
+PDYSD RII TGRCNL+DPTILYQNSDLFSKRR NRFIIPLQ + Q+RENEL PPS
Sbjct: 541 VPDYSDFGRIIGTGRCNLVDPTILYQNSDLFSKRRSNRFIIPLQSIQKQKRENELTPPSD 600
Query: 6116 ISIEIPINGIFRRNSIFAYIDDPRYKRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRP 5937
I IEIPING+FRRNSI AY+DDPRY+R SSGITK+GT+E SIVKKEDLIEYRGGKEFRP
Sbjct: 601 ILIEIPINGVFRRNSILAYLDDPRYRRNSSGITKHGTIETDSIVKKEDLIEYRGGKEFRP 660
Query: 5936 KYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKKRI 5757
KYQMKVDRFFFIPEEVHILPGSSS+MVRNNSIIGVDTQITLNIRSRVGGLVR ERKKKRI
Sbjct: 661 KYQMKVDRFFFIPEEVHILPGSSSLMVRNNSIIGVDTQITLNIRSRVGGLVRAERKKKRI 720
Query: 5756 ELKIFSGDVHFPGETDKISRHSGVLIPPGTGKQXXXXXXXXXXWIYVQRITPSKKKYFVL 5577
ELKIFSGD+HFPGETDKISRHSGVLIPPGTGKQ WIYVQRITPSKKKYFVL
Sbjct: 721 ELKIFSGDIHFPGETDKISRHSGVLIPPGTGKQNSKESKKWKNWIYVQRITPSKKKYFVL 780
Query: 5576 VRPVVTYEITDGITLATLFPPDLLHESDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTC 5397
VRPVVTYEITDGITL TLFPPDLL E DNV+LRVVNYILYGNGKPIRGISDTNIQLVRTC
Sbjct: 781 VRPVVTYEITDGITLGTLFPPDLLQERDNVKLRVVNYILYGNGKPIRGISDTNIQLVRTC 840
Query: 5396 LVLNWDQDKKSSSSQEARASFVEIRANGLIRHFLRIDLVKSIISYIGKRNDPXXXXXXXX 5217
LVLNWDQDKKSSSSQEARASFVEIRANGLIRHFLRIDL+KS ISY GKRNDP
Sbjct: 841 LVLNWDQDKKSSSSQEARASFVEIRANGLIRHFLRIDLLKSTISYSGKRNDPPGSGFLPD 900
Query: 5216 XXXDCTNINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGP--F 5043
DCTNINPFSSIYSK RIQQPLNQN+RTIHTLLNRN FQSLIILSSSNCFRMGP F
Sbjct: 901 NGSDCTNINPFSSIYSKIRIQQPLNQNKRTIHTLLNRNKEFQSLIILSSSNCFRMGPFKF 960
Query: 5042 NDVKY--HNVIKESIQITKDPLQITKDPLIPIKNSLGPLGTAFLIVNVYSFYHLITHNQI 4869
NDVKY HN IKESI QITKDP+IPIKN GPLGTAFLI NVYSFYHLI HNQI
Sbjct: 961 NDVKYHNHNAIKESI-------QITKDPVIPIKNLSGPLGTAFLIANVYSFYHLIIHNQI 1013
Query: 4868 LVNNYLQLDNLKETFQVI--KYYLIDENEKIYNPDSCSNIIFNLNWYFIHLNYCQETSTI 4695
LVNNYLQLDNLK TFQVI KYYLIDENEKI NP CSNIIFNLNWYF+H NYCQE STI
Sbjct: 1014 LVNNYLQLDNLKHTFQVIQFKYYLIDENEKIDNPRPCSNIIFNLNWYFLHPNYCQEKSTI 1073
Query: 4694 MSLGQFICENRYIAQNAPY--LKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILY 4521
M+LGQFICEN YIA+NAP+ LKSGQVILVQVDS VIRSAKPYLATPGATVHGHYGE+LY
Sbjct: 1074 MNLGQFICENIYIAKNAPHLKLKSGQVILVQVDSAVIRSAKPYLATPGATVHGHYGEVLY 1133
Query: 4520 QGDTLITFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPW 4341
+GDTLITFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPW
Sbjct: 1134 EGDTLITFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPW 1193
Query: 4340 TFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFL 4161
FLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITS+VLVSE+GMSNVF
Sbjct: 1194 AFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSRVLVSEEGMSNVFS 1253
Query: 4160 PGELIGLLRAERMGRALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRG 3981
PGELIGLLRAERMGRALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRG
Sbjct: 1254 PGELIGLLRAERMGRALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRG 1313
Query: 3980 RIDWLKGLKENVVLGGMIPVGTGLKGLVPPSKQHNKSPL--ETKKNNLFEGEMRDILFHH 3807
RIDWLKGLKENVVLGGMIPVGTGLKGLVP SKQHN+SPL ETKKNNLFEGEMRDILFHH
Sbjct: 1314 RIDWLKGLKENVVLGGMIPVGTGLKGLVPSSKQHNRSPLEMETKKNNLFEGEMRDILFHH 1373
Query: 3806 RKLFDSFLSKNFHDRPEQSFIGFNDS 3729
RKLFDSF SKNFHDR EQSFIGFNDS
Sbjct: 1374 RKLFDSFFSKNFHDRLEQSFIGFNDS 1399
>gb|AFV61804.1| RNA polymerase beta'' subunit (chloroplast) [Origanum vulgare subsp.
vulgare]
Length = 1397
Score = 2477 bits (6421), Expect = 0.0
Identities = 1264/1404 (90%), Positives = 1299/1404 (92%), Gaps = 10/1404 (0%)
Frame = -1
Query: 7910 MEVFMAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSIS 7731
MEV MAERANLVFHNKVIDGTAMKRLISR I+HFGMAYTSHILDQVK LGFQQATATSIS
Sbjct: 1 MEVLMAERANLVFHNKVIDGTAMKRLISRLIEHFGMAYTSHILDQVKALGFQQATATSIS 60
Query: 7730 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 7551
LGIDDLLTIPSKRWLVQDAEQQS ILEKHHH GNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKRWLVQDAEQQSFILEKHHHCGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 7550 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 7371
PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 7370 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 7191
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTV ISVSPRNGMMP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVHSISVSPRNGMMP 240
Query: 7190 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASW 7011
ERIFIQTLIGRVLADDIYMGTRCIATRNQDIG+GLVNRFITFRAQPIAIRTPFTCRSASW
Sbjct: 241 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASW 300
Query: 7010 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXTAEHVRAPS 6831
ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR TAEHVRAPS
Sbjct: 301 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPS 360
Query: 6830 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES 6651
NGKIKFNEDL+HPTRTRHGHPAFLCSINLYVTIESED RHNVNIPPQSFLLVQNDQYVES
Sbjct: 361 NGKIKFNEDLLHPTRTRHGHPAFLCSINLYVTIESEDSRHNVNIPPQSFLLVQNDQYVES 420
Query: 6650 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 6471
EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVY+APEFTYGNVHLLPKTSHLWI
Sbjct: 421 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYNAPEFTYGNVHLLPKTSHLWI 480
Query: 6470 LLGGPRGSSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQSRQKFFTSDFSGKKEDR 6291
LLG PR SSLVSLS+HKDQDQM+AHS SVKR S SNLSGTND SR+K FTS FS KKEDR
Sbjct: 481 LLGEPRRSSLVSLSIHKDQDQMNAHSCSVKRNSISNLSGTNDPSREKLFTSKFSDKKEDR 540
Query: 6290 IPDYSDLSRIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQLLQERENELMPPSGIS 6111
+PDYSD RII TGRCNL+DPTILYQNSDLFSKRR NRFII LQ +Q+RENEL PPS I
Sbjct: 541 VPDYSDFGRIIGTGRCNLVDPTILYQNSDLFSKRRSNRFIISLQSIQKRENELTPPSDIL 600
Query: 6110 IEIPINGIFRRNSIFAYIDDPRYKRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRPKY 5931
IEIPING+FRRNSI AY+DDPRY+R SSGITK+GT+E SIVKKEDLIEYRGGKEFRPKY
Sbjct: 601 IEIPINGVFRRNSILAYLDDPRYRRNSSGITKHGTIETDSIVKKEDLIEYRGGKEFRPKY 660
Query: 5930 QMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKKRIEL 5751
QMKVDRFFFIPEEVHILPGSSS+MVRNNSIIGVDTQITLNIRSRVGGLVR ERKKKRIEL
Sbjct: 661 QMKVDRFFFIPEEVHILPGSSSLMVRNNSIIGVDTQITLNIRSRVGGLVRAERKKKRIEL 720
Query: 5750 KIFSGDVHFPGETDKISRHSGVLIPPGTGKQXXXXXXXXXXWIYVQRITPSKKKYFVLVR 5571
KIFSG++HFPGETD+ISRHSGVLIPPGTGKQ WIYVQRITPSKKKYFVLVR
Sbjct: 721 KIFSGNIHFPGETDRISRHSGVLIPPGTGKQNSKESKKWKNWIYVQRITPSKKKYFVLVR 780
Query: 5570 PVVTYEITDGITLATLFPPDLLHESDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTCLV 5391
PVVTYEITDGITL TLFPPDLL E DNV+LRVVNYILYGNGKPIRGISD NIQLVRTCL+
Sbjct: 781 PVVTYEITDGITLGTLFPPDLLQERDNVKLRVVNYILYGNGKPIRGISDPNIQLVRTCLI 840
Query: 5390 LNWDQDKKSSSSQEARASFVEIRANGLIRHFLRIDLVKSIISYIGKRNDPXXXXXXXXXX 5211
LNWDQDKKSSSSQEARASFVEIRANGLIRHFLRIDL+KS ISY GKRNDP
Sbjct: 841 LNWDQDKKSSSSQEARASFVEIRANGLIRHFLRIDLLKSTISYSGKRNDPPGSAFLSDNG 900
Query: 5210 XDCTNINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGP--FND 5037
DCTNINPFSSIYSK RIQQPLNQN+RTIHTLLNRN FQSLIILSSSNCFRMGP FND
Sbjct: 901 SDCTNINPFSSIYSKIRIQQPLNQNKRTIHTLLNRNKEFQSLIILSSSNCFRMGPFKFND 960
Query: 5036 VKY--HNVIKESIQITKDPLQITKDPLIPIKNSLGPLGTAFLIVNVYSFYHLITHNQILV 4863
VKY HN IKESI QITKDP+IPIKN PLGTAFLI NVYSFYHLI HNQILV
Sbjct: 961 VKYHNHNAIKESI-------QITKDPVIPIKNLSRPLGTAFLIANVYSFYHLIIHNQILV 1013
Query: 4862 NNYLQLDNLKETFQVI--KYYLIDENEKIYNPDSCSNIIFNLNWYFIHLNYCQETSTIMS 4689
NNYLQLDNLK+TFQVI KYYLIDENEK+ NP CSNIIFNLNWYF+H NYCQE STIM+
Sbjct: 1014 NNYLQLDNLKQTFQVIQFKYYLIDENEKVDNPRPCSNIIFNLNWYFLHPNYCQEKSTIMN 1073
Query: 4688 LGQFICENRYIAQNAPY--LKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQG 4515
LGQFICEN YIA+NAP+ LKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGE+LY+G
Sbjct: 1074 LGQFICENIYIAKNAPHLKLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEVLYEG 1133
Query: 4514 DTLITFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWTF 4335
DTLITFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPW F
Sbjct: 1134 DTLITFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWAF 1193
Query: 4334 LIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPG 4155
LIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSE+GMSNVF PG
Sbjct: 1194 LIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEEGMSNVFSPG 1253
Query: 4154 ELIGLLRAERMGRALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRI 3975
ELIGLLRAERMGRALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRI
Sbjct: 1254 ELIGLLRAERMGRALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRI 1313
Query: 3974 DWLKGLKENVVLGGMIPVGTGLKGLVPPSKQHNKSPL--ETKKNNLFEGEMRDILFHHRK 3801
DWLKGLKENVVLGGMIPVGTGLKGLVP SKQHN+SPL ETKKNNLFEGEMRDILFHHRK
Sbjct: 1314 DWLKGLKENVVLGGMIPVGTGLKGLVPSSKQHNRSPLEMETKKNNLFEGEMRDILFHHRK 1373
Query: 3800 LFDSFLSKNFHDRPEQSFIGFNDS 3729
LFDSF SKNFHDRPEQSFIGFNDS
Sbjct: 1374 LFDSFFSKNFHDRPEQSFIGFNDS 1397
>gb|AKZ23931.1| RNA polymerase beta'' subunit (plastid) [Salvia nemorosa]
Length = 1395
Score = 2474 bits (6413), Expect = 0.0
Identities = 1261/1402 (89%), Positives = 1297/1402 (92%), Gaps = 8/1402 (0%)
Frame = -1
Query: 7910 MEVFMAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSIS 7731
MEV MAERANLVFHNKVIDGTAMKRLISR IDHFGMAYTSHILDQVK LGFQQATATSIS
Sbjct: 1 MEVLMAERANLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKALGFQQATATSIS 60
Query: 7730 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 7551
LGIDDLLTIPSKRWLVQDAEQQS ILEKHHH GNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKRWLVQDAEQQSFILEKHHHCGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 7550 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 7371
PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 7370 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 7191
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSP NG+MP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPGNGIMP 240
Query: 7190 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASW 7011
ERIFIQTLIGRVLADDIYMGTRCIATRNQDIG+GLVNRFITF AQPI IRTPFTCRSASW
Sbjct: 241 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGIGLVNRFITFGAQPITIRTPFTCRSASW 300
Query: 7010 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXTAEHVRAPS 6831
ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR TAEHVRAPS
Sbjct: 301 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPS 360
Query: 6830 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES 6651
NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESED RHNVNIPPQSFLLVQNDQYVES
Sbjct: 361 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDSRHNVNIPPQSFLLVQNDQYVES 420
Query: 6650 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 6471
EQVIAEIRAGTST NFKEKVRKHIYSDSDGEMHWSTDVYHAPEF YGNVHLLPKTSHLWI
Sbjct: 421 EQVIAEIRAGTSTFNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFPYGNVHLLPKTSHLWI 480
Query: 6470 LLGGPRGSSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQSRQKFFTSDFSGKKEDR 6291
LLG PR SSLVSLS+HKDQDQM+AHS SVK STSNLSGT+D SR+KFFTS+FS KKED
Sbjct: 481 LLGEPRRSSLVSLSIHKDQDQMNAHSCSVKSNSTSNLSGTSDPSREKFFTSNFSDKKEDG 540
Query: 6290 IPDYSDLSRIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQLLQERENELMPPSGIS 6111
+PDYSD RII TGRCNL+DPTILYQNS LFSKRR NRFIIPLQ +Q+RENEL PPS I
Sbjct: 541 LPDYSDFGRIIGTGRCNLVDPTILYQNSYLFSKRRSNRFIIPLQSIQKRENELTPPSDIL 600
Query: 6110 IEIPINGIFRRNSIFAYIDDPRYKRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRPKY 5931
IEIPING+FRRNSI AY+DDPRY+RKSSGITK+GTLE SIVKKEDLIEYRGGKEFRPKY
Sbjct: 601 IEIPINGVFRRNSILAYLDDPRYRRKSSGITKHGTLETDSIVKKEDLIEYRGGKEFRPKY 660
Query: 5930 QMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKKRIEL 5751
QMKVDRFFFIPEEVHILPGSSS+MVRNNSIIGVDTQITLNIRS+VGGLVRVERKKKRIEL
Sbjct: 661 QMKVDRFFFIPEEVHILPGSSSLMVRNNSIIGVDTQITLNIRSQVGGLVRVERKKKRIEL 720
Query: 5750 KIFSGDVHFPGETDKISRHSGVLIPPGTGKQXXXXXXXXXXWIYVQRITPSKKKYFVLVR 5571
KIFSGD+HFPGETDK+SRHSGVLIPPGTGKQ W+YVQRITPSKKKYFVLVR
Sbjct: 721 KIFSGDIHFPGETDKVSRHSGVLIPPGTGKQNAKESKKWKNWMYVQRITPSKKKYFVLVR 780
Query: 5570 PVVTYEITDGITLATLFPPDLLHESDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTCLV 5391
PVVTYE TDGITL TLFPPDLL E DNV+LRVVNYILYGNGKPIRGISDTNIQLVRTCLV
Sbjct: 781 PVVTYETTDGITLGTLFPPDLLQERDNVELRVVNYILYGNGKPIRGISDTNIQLVRTCLV 840
Query: 5390 LNWDQDKKSSSSQEARASFVEIRANGLIRHFLRIDLVKSIISYIGKRNDPXXXXXXXXXX 5211
LNWDQDKKSSSSQEARASFVEIRANGLIRHFLRIDL+KS ISY GKRND
Sbjct: 841 LNWDQDKKSSSSQEARASFVEIRANGLIRHFLRIDLLKSTISYSGKRNDRPGSGFLPANG 900
Query: 5210 XDCTNINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVK 5031
DCTNINPFSSIYSK RIQQPLNQN+RTIHTLLNRN GFQSLIILSSSNCFRMGPFNDVK
Sbjct: 901 SDCTNINPFSSIYSKIRIQQPLNQNKRTIHTLLNRNKGFQSLIILSSSNCFRMGPFNDVK 960
Query: 5030 Y--HNVIKESIQITKDPLQITKDPLIPIKNSLGPLGTAFLIVNVYSFYHLITHNQILVNN 4857
Y HN IKESI QITKDP+IPIKN PLGTAFLI NVYSFYHL+ HN+ILVNN
Sbjct: 961 YHNHNAIKESI-------QITKDPVIPIKNLSRPLGTAFLIANVYSFYHLMIHNKILVNN 1013
Query: 4856 YLQLDNLKETFQVI--KYYLIDENEKIYNPDSCSNIIFNLNWYFIHLNYCQETSTIMSLG 4683
YLQLDNLK+TFQVI KYYLIDE+EKIYNP CSNIIFNLNWYF H NYCQE STI +LG
Sbjct: 1014 YLQLDNLKQTFQVIKFKYYLIDEHEKIYNPRPCSNIIFNLNWYFFHPNYCQEKSTITNLG 1073
Query: 4682 QFICENRYIAQNAPY--LKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDT 4509
QFICE YIA+NAP+ LKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILY+GDT
Sbjct: 1074 QFICEKIYIAKNAPHLKLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDT 1133
Query: 4508 LITFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWTFLI 4329
LITFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPW FLI
Sbjct: 1134 LITFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWAFLI 1193
Query: 4328 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGEL 4149
GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSE+GMSNVFLPGEL
Sbjct: 1194 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEEGMSNVFLPGEL 1253
Query: 4148 IGLLRAERMGRALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDW 3969
IGLLRAERMGRALEEAVCY+ALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDW
Sbjct: 1254 IGLLRAERMGRALEEAVCYQALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDW 1313
Query: 3968 LKGLKENVVLGGMIPVGTGLKGLVPPSKQHNKSPL--ETKKNNLFEGEMRDILFHHRKLF 3795
LKGLKENVVLGGMIPVGTGLKGLVP SKQHN+SPL ETKKNNLFEGEMRDILFHHRK+F
Sbjct: 1314 LKGLKENVVLGGMIPVGTGLKGLVPSSKQHNRSPLEMETKKNNLFEGEMRDILFHHRKVF 1373
Query: 3794 DSFLSKNFHDRPEQSFIGFNDS 3729
DS SKNFHDRPEQSFIGFNDS
Sbjct: 1374 DSLFSKNFHDRPEQSFIGFNDS 1395
>ref|YP_009144505.1| RNA polymerase beta'' subunit (chloroplast) [Rosmarinus officinalis]
gi|827345133|gb|AKJ76717.1| RNA polymerase beta'' subunit
(chloroplast) [Rosmarinus officinalis]
Length = 1395
Score = 2474 bits (6411), Expect = 0.0
Identities = 1264/1402 (90%), Positives = 1295/1402 (92%), Gaps = 8/1402 (0%)
Frame = -1
Query: 7910 MEVFMAERANLVFHNKVIDGTAMKRLISRFIDHFGMAYTSHILDQVKTLGFQQATATSIS 7731
MEV MAERANLVFHNKVIDGTAMKRLISR IDHFGMAYTSHILDQVK LGFQQATATSIS
Sbjct: 1 MEVLMAERANLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKALGFQQATATSIS 60
Query: 7730 LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 7551
LGIDDLLTIPSKRWLVQDAEQQS ILEKHHH GNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61 LGIDDLLTIPSKRWLVQDAEQQSFILEKHHHCGNVHAVEKLRQSIEIWYATSEYLRQEMN 120
Query: 7550 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 7371
PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180
Query: 7370 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMP 7191
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSP NGMMP
Sbjct: 181 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPGNGMMP 240
Query: 7190 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGVGLVNRFITFRAQPIAIRTPFTCRSASW 7011
ERIFIQTLIGRVLADDIYMGTRCIATRNQDIG+GLVNRFITFRAQPI IRTPFTCRSASW
Sbjct: 241 ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGIGLVNRFITFRAQPITIRTPFTCRSASW 300
Query: 7010 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRXXXXXXXXXXXTAEHVRAPS 6831
ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLR TAEHVRAPS
Sbjct: 301 ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPS 360
Query: 6830 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES 6651
NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESED RHNVNIPPQSFLLVQNDQYVES
Sbjct: 361 NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDSRHNVNIPPQSFLLVQNDQYVES 420
Query: 6650 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 6471
EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI
Sbjct: 421 EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI 480
Query: 6470 LLGGPRGSSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQSRQKFFTSDFSGKKEDR 6291
LLG PR SSLVSLS+HKDQDQM+AHS SVK STSNLSGTND SR+KFFTS FS KKEDR
Sbjct: 481 LLGEPRRSSLVSLSVHKDQDQMNAHSCSVKSNSTSNLSGTNDPSREKFFTSHFSDKKEDR 540
Query: 6290 IPDYSDLSRIICTGRCNLIDPTILYQNSDLFSKRRRNRFIIPLQLLQERENELMPPSGIS 6111
+PDYSD RII TGRCNL+DPTILYQNSDLFSKRR NRFIIPLQ +Q+RENEL PPS I
Sbjct: 541 LPDYSDFGRIIGTGRCNLVDPTILYQNSDLFSKRRSNRFIIPLQSIQKRENELTPPSDIL 600
Query: 6110 IEIPINGIFRRNSIFAYIDDPRYKRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRPKY 5931
IEIPING+FRRNSI AY+DDPRY+RKS GITK+GTLE SIVKKEDLIEYRGGKEFRPKY
Sbjct: 601 IEIPINGVFRRNSILAYLDDPRYRRKSWGITKHGTLETDSIVKKEDLIEYRGGKEFRPKY 660
Query: 5930 QMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVGGLVRVERKKKRIEL 5751
QMKVDRFFFIPEEVHILPG SS+MVRNNSIIGVDTQITLNIRS+VGGLVRVERKKKRIEL
Sbjct: 661 QMKVDRFFFIPEEVHILPGPSSLMVRNNSIIGVDTQITLNIRSQVGGLVRVERKKKRIEL 720
Query: 5750 KIFSGDVHFPGETDKISRHSGVLIPPGTGKQXXXXXXXXXXWIYVQRITPSKKKYFVLVR 5571
KIFSGD+HFPGETDK+SRHSGVLIPPGTGKQ W+YVQRITPSKKKYFVLVR
Sbjct: 721 KIFSGDIHFPGETDKVSRHSGVLIPPGTGKQNAKESKKWKNWMYVQRITPSKKKYFVLVR 780
Query: 5570 PVVTYEITDGITLATLFPPDLLHESDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTCLV 5391
PVVTYEITDGITL TLFP D L E DNV+LRVVNYILYGNGKPIRGISDTNIQLVRTCLV
Sbjct: 781 PVVTYEITDGITLGTLFPRDRLQERDNVELRVVNYILYGNGKPIRGISDTNIQLVRTCLV 840
Query: 5390 LNWDQDKKSSSSQEARASFVEIRANGLIRHFLRIDLVKSIISYIGKRNDPXXXXXXXXXX 5211
LNWDQDKKSSSSQEA ASFVEIRANGLIRHFLRIDL+KS ISY GKRN+
Sbjct: 841 LNWDQDKKSSSSQEAPASFVEIRANGLIRHFLRIDLLKSTISYSGKRNNRPGSGFIPANG 900
Query: 5210 XDCTNINPFSSIYSKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFNDVK 5031
DCTNINPFSSIYSK RIQQPLNQN+RTIHTLLNRN GFQSLIILSSSNCFRMGPFNDVK
Sbjct: 901 SDCTNINPFSSIYSKIRIQQPLNQNKRTIHTLLNRNKGFQSLIILSSSNCFRMGPFNDVK 960
Query: 5030 Y--HNVIKESIQITKDPLQITKDPLIPIKNSLGPLGTAFLIVNVYSFYHLITHNQILVNN 4857
Y HN IKESI QITKDP+IPIKN PLGTAFLI NVYSFYHL+ HNQILVN+
Sbjct: 961 YQNHNAIKESI-------QITKDPVIPIKNLSRPLGTAFLIANVYSFYHLMIHNQILVNH 1013
Query: 4856 YLQLDNLKETFQVI--KYYLIDENEKIYNPDSCSNIIFNLNWYFIHLNYCQETSTIMSLG 4683
YLQLDNLK+TFQVI KYYLIDENEKIYNP CSNIIFNLNWYF H NYCQE STIM+LG
Sbjct: 1014 YLQLDNLKQTFQVIQFKYYLIDENEKIYNPRPCSNIIFNLNWYFFHPNYCQEKSTIMNLG 1073
Query: 4682 QFICENRYIAQNAPY--LKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDT 4509
QFICE IA+NAP+ LKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILY+GDT
Sbjct: 1074 QFICEKIDIAKNAPHLKLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDT 1133
Query: 4508 LITFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWTFLI 4329
LITFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPW FLI
Sbjct: 1134 LITFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWAFLI 1193
Query: 4328 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGEL 4149
GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSE+GMSNVF PGEL
Sbjct: 1194 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEEGMSNVFSPGEL 1253
Query: 4148 IGLLRAERMGRALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDW 3969
IGLLRAERMGRALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDW
Sbjct: 1254 IGLLRAERMGRALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDW 1313
Query: 3968 LKGLKENVVLGGMIPVGTGLKGLVPPSKQHNKSPL--ETKKNNLFEGEMRDILFHHRKLF 3795
LKGLKENVVLGGMIPVGTGLKGLV SKQHN+SPL ETKKNNLFEGEMRDILFHHRKLF
Sbjct: 1314 LKGLKENVVLGGMIPVGTGLKGLVSSSKQHNRSPLEMETKKNNLFEGEMRDILFHHRKLF 1373
Query: 3794 DSFLSKNFHDRPEQSFIGFNDS 3729
DS SKNFHDRPEQSFIGFNDS
Sbjct: 1374 DSLFSKNFHDRPEQSFIGFNDS 1395