BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia27_contig00000694
         (2072 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_011075762.1| PREDICTED: RNA polymerase sigma factor sigA ...   803   0.0  
ref|XP_012850610.1| PREDICTED: RNA polymerase sigma factor sigA ...   740   0.0  
gb|EYU44876.1| hypothetical protein MIMGU_mgv1a004509mg [Erythra...   734   0.0  
ref|XP_015164353.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymera...   669   0.0  
ref|XP_015070237.1| PREDICTED: RNA polymerase sigma factor sigA ...   669   0.0  
ref|XP_004235299.1| PREDICTED: RNA polymerase sigma factor sigA ...   668   0.0  
ref|XP_009771934.1| PREDICTED: RNA polymerase sigma factor sigA ...   660   0.0  
dbj|BAA88921.1| sigma factor [Nicotiana tabacum]                      660   0.0  
ref|XP_007029766.1| Sigma factor A isoform 1 [Theobroma cacao] g...   660   0.0  
ref|XP_006484698.1| PREDICTED: RNA polymerase sigma factor sigA ...   657   0.0  
emb|CDP04910.1| unnamed protein product [Coffea canephora]            654   0.0  
gb|KDO48032.1| hypothetical protein CISIN_1g010521mg [Citrus sin...   653   0.0  
ref|XP_002524027.2| PREDICTED: RNA polymerase sigma factor sigA ...   652   0.0  
ref|XP_006437403.1| hypothetical protein CICLE_v10031289mg [Citr...   652   0.0  
gb|EEF38395.1| RNA polymerase sigma factor rpoD, putative [Ricin...   651   0.0  
ref|XP_012492333.1| PREDICTED: RNA polymerase sigma factor sigA-...   649   0.0  
ref|XP_009601815.1| PREDICTED: RNA polymerase sigma factor sigA-...   649   0.0  
ref|XP_012070278.1| PREDICTED: RNA polymerase sigma factor sigA ...   649   0.0  
ref|XP_008234513.1| PREDICTED: RNA polymerase sigma factor sigA ...   644   0.0  
ref|XP_009767654.1| PREDICTED: RNA polymerase sigma factor sigA-...   644   0.0  

>ref|XP_011075762.1| PREDICTED: RNA polymerase sigma factor sigA [Sesamum indicum]
          Length = 505

 Score =  803 bits (2073), Expect = 0.0
 Identities = 422/507 (83%), Positives = 449/507 (88%), Gaps = 6/507 (1%)
 Frame = -3

Query: 1812 MIMATA-VIGLSTGKRLLLSSTFYYSDLSEKLACTTDPHHQNASTKNAITAKRSSNFVSN 1636
            MIMATA VIGLSTGKRLLLSSTF YSDLS+KLACTTDPH+Q ASTKNAITAK+SSNF+SN
Sbjct: 1    MIMATAAVIGLSTGKRLLLSSTFSYSDLSDKLACTTDPHYQIASTKNAITAKKSSNFISN 60

Query: 1635 RRSQ-SIRALKEHHVDTASNPCTLEPWLIHGSSLLNEEISDPEYLVDAILLLQKSMLEKQ 1459
            RR   S+RALKEH VDTASN CTLEPWLIHGS+L  +E +DPEYLVDA+LLLQKSMLEKQ
Sbjct: 61   RRPPASVRALKEH-VDTASNNCTLEPWLIHGSTLSTDETTDPEYLVDAVLLLQKSMLEKQ 119

Query: 1458 WNLSAETTKTT----SRARKKIQVICSGTSARRRRMDSRKKVIGRKVSNPGQLNTSKQWR 1291
            WNLSAETT        RAR KI+V CSGTSARRRRMDSRKK++GRK     QL TS+QWR
Sbjct: 120  WNLSAETTTKAVIPKDRARNKIEVTCSGTSARRRRMDSRKKILGRKFP-ASQLTTSRQWR 178

Query: 1290 SIISPELLQNSLKGYVKGVISDELLTHAQVVQLSQKIKAGXXXXXXXXXXXXXLGCEPSD 1111
            SI+SPELLQN LKGYVKGV+S+ELLTHAQVVQLS+KIKAG             LG EPSD
Sbjct: 179  SIVSPELLQNRLKGYVKGVVSEELLTHAQVVQLSEKIKAGLLLEEQKSRLKERLGFEPSD 238

Query: 1110 EQLATSLRISRTDLQSKMIECSLAREKLAMSNIRLVMSIAQRYDNMGAEMADXXXXXXXX 931
            EQLATSLRISRT+LQSK+IECSLAR+KLAMSNIRLVMSIAQRYDNMGAEMAD        
Sbjct: 239  EQLATSLRISRTNLQSKLIECSLARDKLAMSNIRLVMSIAQRYDNMGAEMADLIQGGLIG 298

Query: 930  XXXXIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKARLE 751
                IEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERL LIRNAKARLE
Sbjct: 299  LLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRNAKARLE 358

Query: 750  EKGITPSIDKIAENLNMSQKKIRNATEAISKVFSLDREAFPSLNGLPGESLHSYIADNHI 571
            EKGITPSID+IAE LNMSQKK++NATEAI+KVFSLDREAFPSLNGLPGE+LHSYIADNH+
Sbjct: 359  EKGITPSIDRIAECLNMSQKKVKNATEAITKVFSLDREAFPSLNGLPGETLHSYIADNHV 418

Query: 570  ENNPWHGVDEWALKDEVDKLITLTLRERERDIIRLYYGLDNECLTWEDISRRIGLSRERV 391
            ENNPWHGVDEWALKDEVDKLI LTLRERER+IIRLYYGLDNECLTWEDISRRIGLSRERV
Sbjct: 419  ENNPWHGVDEWALKDEVDKLINLTLREREREIIRLYYGLDNECLTWEDISRRIGLSRERV 478

Query: 390  RQVGLVALEKLKHAARKRRLDAMLVQH 310
            RQVGLVALEKLKHAARKRRLD MLVQH
Sbjct: 479  RQVGLVALEKLKHAARKRRLDTMLVQH 505


>ref|XP_012850610.1| PREDICTED: RNA polymerase sigma factor sigA [Erythranthe guttata]
            gi|848854999|ref|XP_012850616.1| PREDICTED: RNA
            polymerase sigma factor sigA [Erythranthe guttata]
            gi|604346414|gb|EYU44877.1| hypothetical protein
            MIMGU_mgv1a004509mg [Erythranthe guttata]
            gi|604346415|gb|EYU44878.1| hypothetical protein
            MIMGU_mgv1a004509mg [Erythranthe guttata]
          Length = 520

 Score =  740 bits (1910), Expect = 0.0
 Identities = 399/521 (76%), Positives = 436/521 (83%), Gaps = 20/521 (3%)
 Frame = -3

Query: 1812 MIMATAVI--GLSTGKRLLLSSTFYYSDLSEK-LACTTDPHHQNASTKNAITAKRSSNFV 1642
            MIMATA +  GLSTGKRLLLSS+ +YSD+S+K +AC+TD H   AS+K  I AK+SSNF 
Sbjct: 1    MIMATAAVINGLSTGKRLLLSSSLFYSDVSDKFVACSTDSHCPIASSKKPINAKKSSNFF 60

Query: 1641 SNRRSQSIRALKEHHVDTASNPCTLEPWLIHGSSLLNEEI-SDPEYLVDAILLLQKSMLE 1465
            SNR   SIRALKEH VD AS+PCTLEPWLIHGS+LL EE  +  EYLVDA+LLLQKS+LE
Sbjct: 61   SNRHPHSIRALKEH-VDAASDPCTLEPWLIHGSTLLGEEDETSDEYLVDAVLLLQKSLLE 119

Query: 1464 KQWNLSAET-TKTT-------------SRARKKI-QVICSGTSARRRRMDSRKKVIGRKV 1330
            KQWNLSAE+ TK T             +RARKKI QV CSGTSAR RRMDSRKK +GR +
Sbjct: 120  KQWNLSAESSTKQTVTSPRERTPAPARARARKKITQVTCSGTSARSRRMDSRKKAVGRNI 179

Query: 1329 SNPGQLNTSKQWRSIISPELLQNSLK-GYVKGVISDELLTHAQVVQLSQKIKAGXXXXXX 1153
            SN    N  KQWRSIISPELLQNS + GYVKGVIS++LLTH+QVVQLSQ IKAG      
Sbjct: 180  SNSHHDNVRKQWRSIISPELLQNSSRRGYVKGVISEDLLTHSQVVQLSQIIKAGLLLEDR 239

Query: 1152 XXXXXXXLGCEPSDEQLATSLRISRTDLQSKMIECSLAREKLAMSNIRLVMSIAQRYDNM 973
                   LGCEPSDEQLATSL+ISR DLQSK+IECSLAREKLAMSNIRLVMSIAQRYD+M
Sbjct: 240  RSRLKERLGCEPSDEQLATSLQISRADLQSKLIECSLAREKLAMSNIRLVMSIAQRYDHM 299

Query: 972  GAEMADXXXXXXXXXXXXIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLH 793
            GAEMAD            IEK+DSSKGFKISTYVYWWIRQGVS+ALVENSRTLRLPTHLH
Sbjct: 300  GAEMADLIQGGLIGLLRGIEKYDSSKGFKISTYVYWWIRQGVSKALVENSRTLRLPTHLH 359

Query: 792  ERLGLIRNAKARLEEKGITPSIDKIAENLNMSQKKIRNATEAISKVFSLDREAFPSLNGL 613
            ERL LIRNAKARLEEKGITPSI +IAE+LNMSQKK+RNATEA SKVFSLDREAFPSLNG+
Sbjct: 360  ERLSLIRNAKARLEEKGITPSISRIAESLNMSQKKVRNATEANSKVFSLDREAFPSLNGI 419

Query: 612  PGESLHSYIADNHIENNPWHGVDEWALKDEVDKLITLTLRERERDIIRLYYGLDNECLTW 433
            PG++LHSYIADNH+EN PWHGVDEWALKDEVDKLITLTLRERER+IIRLYYGLDNECLTW
Sbjct: 420  PGKTLHSYIADNHVENIPWHGVDEWALKDEVDKLITLTLREREREIIRLYYGLDNECLTW 479

Query: 432  EDISRRIGLSRERVRQVGLVALEKLKHAARKRRLDAMLVQH 310
            EDISRRIGLSRERVRQVGLVALEKLKHAAR  RLDA+ +QH
Sbjct: 480  EDISRRIGLSRERVRQVGLVALEKLKHAARNTRLDALFIQH 520


>gb|EYU44876.1| hypothetical protein MIMGU_mgv1a004509mg [Erythranthe guttata]
          Length = 523

 Score =  734 bits (1896), Expect = 0.0
 Identities = 399/524 (76%), Positives = 436/524 (83%), Gaps = 23/524 (4%)
 Frame = -3

Query: 1812 MIMATAVI--GLSTGKRLLLSSTFYYSDLSEK-LACTTDPHHQNASTKNAITAKRSSNFV 1642
            MIMATA +  GLSTGKRLLLSS+ +YSD+S+K +AC+TD H   AS+K  I AK+SSNF 
Sbjct: 1    MIMATAAVINGLSTGKRLLLSSSLFYSDVSDKFVACSTDSHCPIASSKKPINAKKSSNFF 60

Query: 1641 SNRRSQSIRALKEHHVDTASNPCTLEPWLIHGSSLLNEEI-SDPEYLVDAILLLQKSMLE 1465
            SNR   SIRALKEH VD AS+PCTLEPWLIHGS+LL EE  +  EYLVDA+LLLQKS+LE
Sbjct: 61   SNRHPHSIRALKEH-VDAASDPCTLEPWLIHGSTLLGEEDETSDEYLVDAVLLLQKSLLE 119

Query: 1464 KQWNLSAET-TKTT-------------SRARKKI-QVICSGTSARRRRMDSRKKVIGRKV 1330
            KQWNLSAE+ TK T             +RARKKI QV CSGTSAR RRMDSRKK +GR +
Sbjct: 120  KQWNLSAESSTKQTVTSPRERTPAPARARARKKITQVTCSGTSARSRRMDSRKKAVGRNI 179

Query: 1329 SNPGQLNTSKQWRSIISPELLQNSLK-GYVKGVISDELLTHAQVVQLSQKIKAGXXXXXX 1153
            SN    N  KQWRSIISPELLQNS + GYVKGVIS++LLTH+QVVQLSQ IKAG      
Sbjct: 180  SNSHHDNVRKQWRSIISPELLQNSSRRGYVKGVISEDLLTHSQVVQLSQIIKAGLLLEDR 239

Query: 1152 XXXXXXXLGCEPSDEQLATSLRISRTDLQSKMIECSLAREKLAMSNIRLVMSIAQRYDNM 973
                   LGCEPSDEQLATSL+ISR DLQSK+IECSLAREKLAMSNIRLVMSIAQRYD+M
Sbjct: 240  RSRLKERLGCEPSDEQLATSLQISRADLQSKLIECSLAREKLAMSNIRLVMSIAQRYDHM 299

Query: 972  GAEMADXXXXXXXXXXXXIEKFDSSKGFKISTYVYWWIRQ---GVSRALVENSRTLRLPT 802
            GAEMAD            IEK+DSSKGFKISTYVYWWIRQ   GVS+ALVENSRTLRLPT
Sbjct: 300  GAEMADLIQGGLIGLLRGIEKYDSSKGFKISTYVYWWIRQHCQGVSKALVENSRTLRLPT 359

Query: 801  HLHERLGLIRNAKARLEEKGITPSIDKIAENLNMSQKKIRNATEAISKVFSLDREAFPSL 622
            HLHERL LIRNAKARLEEKGITPSI +IAE+LNMSQKK+RNATEA SKVFSLDREAFPSL
Sbjct: 360  HLHERLSLIRNAKARLEEKGITPSISRIAESLNMSQKKVRNATEANSKVFSLDREAFPSL 419

Query: 621  NGLPGESLHSYIADNHIENNPWHGVDEWALKDEVDKLITLTLRERERDIIRLYYGLDNEC 442
            NG+PG++LHSYIADNH+EN PWHGVDEWALKDEVDKLITLTLRERER+IIRLYYGLDNEC
Sbjct: 420  NGIPGKTLHSYIADNHVENIPWHGVDEWALKDEVDKLITLTLREREREIIRLYYGLDNEC 479

Query: 441  LTWEDISRRIGLSRERVRQVGLVALEKLKHAARKRRLDAMLVQH 310
            LTWEDISRRIGLSRERVRQVGLVALEKLKHAAR  RLDA+ +QH
Sbjct: 480  LTWEDISRRIGLSRERVRQVGLVALEKLKHAARNTRLDALFIQH 523


>ref|XP_015164353.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase sigma factor sigA
            [Solanum tuberosum]
          Length = 509

 Score =  669 bits (1726), Expect = 0.0
 Identities = 354/511 (69%), Positives = 411/511 (80%), Gaps = 11/511 (2%)
 Frame = -3

Query: 1812 MIMATAVIGLSTGKRLLLSSTFYYSDLSEKLACTTD---PHHQNASTKNAITAKRSSNF- 1645
            M+  TAVIGLS GKRLL SS+FYYSDL+EKL+C++D   P HQ  S KN ITAK+SSN+ 
Sbjct: 1    MMATTAVIGLSAGKRLL-SSSFYYSDLNEKLSCSSDHSFPCHQVPSVKNVITAKKSSNYS 59

Query: 1644 ---VSNRRSQSIRALKEHHVDTASNPCTLEPWLIHGSSLLNEEISDPEYLVDAILLLQKS 1474
               VS+R+ QS++ALKEH +D AS+P  ++ W      L NE   + +  V+A LLLQKS
Sbjct: 60   PSYVSSRKLQSVKALKEH-IDIASDPSDVQSWFERFEQLQNESDDEDDDSVEAFLLLQKS 118

Query: 1473 MLEKQWNLSAETTKTTSRAR----KKIQVICSGTSARRRRMDSRKKVIGRKVSNPGQLNT 1306
            MLEKQWNLSAE T T S       KK+ + CSGT+ARRRR DSR++V+G K S+   ++ 
Sbjct: 119  MLEKQWNLSAEETLTASPQHEKNCKKMHITCSGTTARRRRTDSRQRVLGPK-SSATPISA 177

Query: 1305 SKQWRSIISPELLQNSLKGYVKGVISDELLTHAQVVQLSQKIKAGXXXXXXXXXXXXXLG 1126
            +K  RSII PELLQN LKGYVKGV+SDELLTH +V+QLS+KI+ G             LG
Sbjct: 178  TKPLRSIIGPELLQNRLKGYVKGVVSDELLTHTEVLQLSKKIQVGLHVEEQKSRLKDRLG 237

Query: 1125 CEPSDEQLATSLRISRTDLQSKMIECSLAREKLAMSNIRLVMSIAQRYDNMGAEMADXXX 946
            CEPSD+QLA SL++ RTDLQS +IECSLARE+L+MSN+RLVMSIAQRYDNMGAEMAD   
Sbjct: 238  CEPSDDQLALSLKMPRTDLQSTLIECSLARERLSMSNVRLVMSIAQRYDNMGAEMADLVQ 297

Query: 945  XXXXXXXXXIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNA 766
                     IEKFD SKG+KISTYVYWWIRQGVSR LVENSRTLRLPTHLHERLGLIRNA
Sbjct: 298  GGLIGLLRGIEKFDPSKGYKISTYVYWWIRQGVSRTLVENSRTLRLPTHLHERLGLIRNA 357

Query: 765  KARLEEKGITPSIDKIAENLNMSQKKIRNATEAISKVFSLDREAFPSLNGLPGESLHSYI 586
            K RLEEKGITPS++ IA +LNMSQKK+RNATEA SKV+SLDRE FPSLNGLPG +LHSYI
Sbjct: 358  KMRLEEKGITPSVNNIAASLNMSQKKVRNATEASSKVYSLDREVFPSLNGLPGATLHSYI 417

Query: 585  ADNHIENNPWHGVDEWALKDEVDKLITLTLRERERDIIRLYYGLDNECLTWEDISRRIGL 406
            ADNH+ENNPWHGVD WALKDEV+ LI+ +LRERER+IIRLYYGLD+ECLTWEDIS+RIGL
Sbjct: 418  ADNHLENNPWHGVDTWALKDEVNNLISSSLREREREIIRLYYGLDSECLTWEDISKRIGL 477

Query: 405  SRERVRQVGLVALEKLKHAARKRRLDAMLVQ 313
            SRERVRQVGLVALEKLKHAARKRRLDAML++
Sbjct: 478  SRERVRQVGLVALEKLKHAARKRRLDAMLIK 508


>ref|XP_015070237.1| PREDICTED: RNA polymerase sigma factor sigA [Solanum pennellii]
          Length = 509

 Score =  669 bits (1726), Expect = 0.0
 Identities = 352/511 (68%), Positives = 413/511 (80%), Gaps = 11/511 (2%)
 Frame = -3

Query: 1812 MIMATAVIGLSTGKRLLLSSTFYYSDLSEKLACTTD---PHHQNASTKNAITAKRSSNF- 1645
            M+  TAVIGLS GKRLL SS+FYYSDL+EKL+C++D   P HQ  + KN I+AK+SS++ 
Sbjct: 1    MMATTAVIGLSAGKRLL-SSSFYYSDLNEKLSCSSDHSLPCHQVPTVKNVISAKKSSDYS 59

Query: 1644 ---VSNRRSQSIRALKEHHVDTASNPCTLEPWLIHGSSLLNEEISDPEYLVDAILLLQKS 1474
               VS+R+ QS++ALKEH VD AS+P  ++ W      L NE   + +  V+ +LLLQKS
Sbjct: 60   PSCVSSRKLQSVKALKEH-VDIASDPSDVQSWFERFEQLQNESDDEEDDSVEVLLLLQKS 118

Query: 1473 MLEKQWNLSAETTKTTSRAR----KKIQVICSGTSARRRRMDSRKKVIGRKVSNPGQLNT 1306
            MLEKQWNLSAE T T S       KK+ + CSGTSARRRRMDSR++V+ +K S+   ++ 
Sbjct: 119  MLEKQWNLSAEETLTASTQHEKNCKKMHIACSGTSARRRRMDSRQRVLAQK-SSATPISA 177

Query: 1305 SKQWRSIISPELLQNSLKGYVKGVISDELLTHAQVVQLSQKIKAGXXXXXXXXXXXXXLG 1126
            +K  RSI+ PELLQN LKGYVKG++S+ELLTH +V+QLS+KIK G             LG
Sbjct: 178  TKPLRSILGPELLQNRLKGYVKGIVSEELLTHTEVLQLSKKIKVGLHVEEQKSRLKERLG 237

Query: 1125 CEPSDEQLATSLRISRTDLQSKMIECSLAREKLAMSNIRLVMSIAQRYDNMGAEMADXXX 946
            CEPSD+QLA SL++SRTDLQS +IECSLARE+L+MSN+RLVMSIAQRYDNMGAEMAD   
Sbjct: 238  CEPSDDQLAVSLKMSRTDLQSTLIECSLARERLSMSNVRLVMSIAQRYDNMGAEMADLVQ 297

Query: 945  XXXXXXXXXIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNA 766
                     IEKFD SKG+KISTYVYWWIRQGVSR LVENSRTLRLPTHLHERLGLIRNA
Sbjct: 298  GGLIGLLRGIEKFDPSKGYKISTYVYWWIRQGVSRTLVENSRTLRLPTHLHERLGLIRNA 357

Query: 765  KARLEEKGITPSIDKIAENLNMSQKKIRNATEAISKVFSLDREAFPSLNGLPGESLHSYI 586
            K RLEEKGITPS++ IA +LNMSQKK+RNATEA SKV+SLDRE FPSLNGLPG +LHSYI
Sbjct: 358  KMRLEEKGITPSVNNIAASLNMSQKKVRNATEASSKVYSLDREVFPSLNGLPGATLHSYI 417

Query: 585  ADNHIENNPWHGVDEWALKDEVDKLITLTLRERERDIIRLYYGLDNECLTWEDISRRIGL 406
            ADNH+ENNPWHGVD WALKDEV+ LI+ TLRERER+IIRLYYGLD+ECLTWEDIS+RIGL
Sbjct: 418  ADNHLENNPWHGVDVWALKDEVNNLISSTLREREREIIRLYYGLDSECLTWEDISKRIGL 477

Query: 405  SRERVRQVGLVALEKLKHAARKRRLDAMLVQ 313
            SRERVRQVGLVALEKLKHAARKRRLDAML++
Sbjct: 478  SRERVRQVGLVALEKLKHAARKRRLDAMLIK 508


>ref|XP_004235299.1| PREDICTED: RNA polymerase sigma factor sigA [Solanum lycopersicum]
          Length = 509

 Score =  668 bits (1723), Expect = 0.0
 Identities = 351/511 (68%), Positives = 413/511 (80%), Gaps = 11/511 (2%)
 Frame = -3

Query: 1812 MIMATAVIGLSTGKRLLLSSTFYYSDLSEKLACTTD---PHHQNASTKNAITAKRSSNF- 1645
            M+  TAVIGLS GKRLL SS+FYYSDL+EKL+C++D   P HQ  + KN I+AK+SS++ 
Sbjct: 1    MMATTAVIGLSAGKRLL-SSSFYYSDLNEKLSCSSDHSLPCHQVPTVKNVISAKKSSDYS 59

Query: 1644 ---VSNRRSQSIRALKEHHVDTASNPCTLEPWLIHGSSLLNEEISDPEYLVDAILLLQKS 1474
               VS+R+ QS++ALKEH VD AS+P  ++ W      L NE   + +  V+ +LLLQKS
Sbjct: 60   PSCVSSRKLQSVKALKEH-VDIASDPSDVQSWFERFEQLQNESDDEEDDSVEVLLLLQKS 118

Query: 1473 MLEKQWNLSAETTKTTSRARKK----IQVICSGTSARRRRMDSRKKVIGRKVSNPGQLNT 1306
            MLEKQWNLSAE T T S  RKK    + + CSGTSARRRRMDSR++V+ +K S+   ++ 
Sbjct: 119  MLEKQWNLSAEETLTASTQRKKNCKKMHIACSGTSARRRRMDSRQRVLAQK-SSATPISA 177

Query: 1305 SKQWRSIISPELLQNSLKGYVKGVISDELLTHAQVVQLSQKIKAGXXXXXXXXXXXXXLG 1126
            +K  RSI+ P+LLQN LKGYVKG++S+ELLTH +V+QLS+KIK G             LG
Sbjct: 178  TKPLRSILGPDLLQNRLKGYVKGIVSEELLTHTEVLQLSKKIKVGLHVEEQKSRLKERLG 237

Query: 1125 CEPSDEQLATSLRISRTDLQSKMIECSLAREKLAMSNIRLVMSIAQRYDNMGAEMADXXX 946
            CEPSD+QLA SL++SRTDLQS +IECSLARE+L+MSN+RLVMSIAQRYDNMGAEMAD   
Sbjct: 238  CEPSDDQLAVSLKMSRTDLQSTLIECSLARERLSMSNVRLVMSIAQRYDNMGAEMADLVQ 297

Query: 945  XXXXXXXXXIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNA 766
                     IEKFD SKG+KISTYVYWWIRQGVSR LVENSRTLRLPTHLHERLGLIRNA
Sbjct: 298  GGLIGLLRGIEKFDPSKGYKISTYVYWWIRQGVSRTLVENSRTLRLPTHLHERLGLIRNA 357

Query: 765  KARLEEKGITPSIDKIAENLNMSQKKIRNATEAISKVFSLDREAFPSLNGLPGESLHSYI 586
            K RLEEKGI PS++ IA +LNMSQKK+RNATEA SKV+SLDRE FPSLNGLPG +LHSYI
Sbjct: 358  KMRLEEKGINPSVNNIAASLNMSQKKVRNATEASSKVYSLDREVFPSLNGLPGTTLHSYI 417

Query: 585  ADNHIENNPWHGVDEWALKDEVDKLITLTLRERERDIIRLYYGLDNECLTWEDISRRIGL 406
            ADNH+ENNPWHGVD WALKDEV+ LI+ TLRERER+IIRLYYGLD+ECLTWEDIS+RIGL
Sbjct: 418  ADNHLENNPWHGVDVWALKDEVNNLISSTLREREREIIRLYYGLDSECLTWEDISKRIGL 477

Query: 405  SRERVRQVGLVALEKLKHAARKRRLDAMLVQ 313
            SRERVRQVGLVALEKLKHAARKRRLDAML++
Sbjct: 478  SRERVRQVGLVALEKLKHAARKRRLDAMLIK 508


>ref|XP_009771934.1| PREDICTED: RNA polymerase sigma factor sigA [Nicotiana sylvestris]
          Length = 508

 Score =  660 bits (1703), Expect = 0.0
 Identities = 353/511 (69%), Positives = 410/511 (80%), Gaps = 11/511 (2%)
 Frame = -3

Query: 1812 MIMATAVIGLSTGKRLLLSSTFYYSDLSEKLACTTD---PHHQNASTKNAITAKRSSNF- 1645
            M+   AVIGLS GKRLL SS+FYYSDL+EKL CT+D   P H   S KN ITAK+SS++ 
Sbjct: 1    MMSTAAVIGLSAGKRLL-SSSFYYSDLNEKLTCTSDHSLPCHHVPSIKNVITAKKSSDYS 59

Query: 1644 ---VSNRRSQSIRALKEHHVDTASNPCTLEPWLIHGSSLLNEEISDPEYLVDAILLLQKS 1474
               VS+R+SQS ++LKEH VD  ++P  +  W      L NE   D +  V+ +LLLQKS
Sbjct: 60   PSCVSSRKSQSTKSLKEH-VDITADPSDVPSWFEMYEQLQNES-DDEDESVEVLLLLQKS 117

Query: 1473 MLEKQWNLSAETTKTTS----RARKKIQVICSGTSARRRRMDSRKKVIGRKVSNPGQLNT 1306
            MLEKQWNLS E T T S    +  KK+ + CSGTSARRRRMDSR++V+ R  S+    + 
Sbjct: 118  MLEKQWNLSLEQTLTASPQHEKKSKKMHITCSGTSARRRRMDSRQRVLDRH-SSATPTSA 176

Query: 1305 SKQWRSIISPELLQNSLKGYVKGVISDELLTHAQVVQLSQKIKAGXXXXXXXXXXXXXLG 1126
            +K  RSII PELLQN LKGYVKGV+S+ELLTHA+V+QLS+KI+ G             LG
Sbjct: 177  AKPLRSIIGPELLQNRLKGYVKGVVSEELLTHAEVLQLSKKIQVGLYLEEQKSRLKERLG 236

Query: 1125 CEPSDEQLATSLRISRTDLQSKMIECSLAREKLAMSNIRLVMSIAQRYDNMGAEMADXXX 946
            CEPSD+QLA SL++SRTDLQS +IECSLARE+LAMSN+RLVMSIAQRYDN+GAEMAD   
Sbjct: 237  CEPSDDQLAVSLKMSRTDLQSTLIECSLARERLAMSNVRLVMSIAQRYDNVGAEMADLVQ 296

Query: 945  XXXXXXXXXIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNA 766
                     IEKFD SKG+KISTYVYWWIRQGVSRALVENSRTLRLPT+LHERL LIRNA
Sbjct: 297  GGLIGLLRGIEKFDPSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTYLHERLSLIRNA 356

Query: 765  KARLEEKGITPSIDKIAENLNMSQKKIRNATEAISKVFSLDREAFPSLNGLPGESLHSYI 586
            KARLEEKGITPS++ IA +LNMSQKK+RNATEA SK++SLDREAFPSLNGLPGE+LHSYI
Sbjct: 357  KARLEEKGITPSVNNIAASLNMSQKKVRNATEASSKMYSLDREAFPSLNGLPGETLHSYI 416

Query: 585  ADNHIENNPWHGVDEWALKDEVDKLITLTLRERERDIIRLYYGLDNECLTWEDISRRIGL 406
            ADNH+ENNPWHGVD WALKDEV+ LI+ TLR+RER+IIRLYYGLDNECLTWEDIS+RIGL
Sbjct: 417  ADNHLENNPWHGVDVWALKDEVNNLISSTLRDREREIIRLYYGLDNECLTWEDISKRIGL 476

Query: 405  SRERVRQVGLVALEKLKHAARKRRLDAMLVQ 313
            SRERVRQVGLVALEKLKHAARKR+LDAML++
Sbjct: 477  SRERVRQVGLVALEKLKHAARKRQLDAMLIK 507


>dbj|BAA88921.1| sigma factor [Nicotiana tabacum]
          Length = 508

 Score =  660 bits (1703), Expect = 0.0
 Identities = 353/511 (69%), Positives = 410/511 (80%), Gaps = 11/511 (2%)
 Frame = -3

Query: 1812 MIMATAVIGLSTGKRLLLSSTFYYSDLSEKLACTTD---PHHQNASTKNAITAKRSSNF- 1645
            M+   AVIGLS GKRLL SS+FYYSDL+EKL CT+D   P H   S KN ITAK+SS++ 
Sbjct: 1    MMSTAAVIGLSAGKRLL-SSSFYYSDLNEKLTCTSDHSLPCHHVPSIKNVITAKKSSDYS 59

Query: 1644 ---VSNRRSQSIRALKEHHVDTASNPCTLEPWLIHGSSLLNEEISDPEYLVDAILLLQKS 1474
               VS+R+SQS ++LKEH VD  ++P  +  W      L NE   D +  V+ +LLLQKS
Sbjct: 60   PSCVSSRKSQSAKSLKEH-VDITADPSDVPSWFEMYEQLQNES-DDEDESVEVLLLLQKS 117

Query: 1473 MLEKQWNLSAETTKTTS----RARKKIQVICSGTSARRRRMDSRKKVIGRKVSNPGQLNT 1306
            MLEKQWNLS E T T S    +  KK+ + CSGTSARRRRMDSR++V+ R  S+    + 
Sbjct: 118  MLEKQWNLSLEQTLTASPQHEKKSKKMHITCSGTSARRRRMDSRQRVLDRH-SSATPTSA 176

Query: 1305 SKQWRSIISPELLQNSLKGYVKGVISDELLTHAQVVQLSQKIKAGXXXXXXXXXXXXXLG 1126
            +K  RSII PELLQN LKGYVKGV+S+ELLTHA+V+QLS+KI+ G             LG
Sbjct: 177  AKPLRSIIGPELLQNRLKGYVKGVVSEELLTHAEVLQLSKKIQVGLYLEEQKSRLKERLG 236

Query: 1125 CEPSDEQLATSLRISRTDLQSKMIECSLAREKLAMSNIRLVMSIAQRYDNMGAEMADXXX 946
            CEPSD+QLA SL++SRTDLQS +IECSLARE+LAMSN+RLVMSIAQRYDN+GAEMAD   
Sbjct: 237  CEPSDDQLAVSLKMSRTDLQSTLIECSLARERLAMSNVRLVMSIAQRYDNVGAEMADLVQ 296

Query: 945  XXXXXXXXXIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNA 766
                     IEKFD SKG+KISTYVYWWIRQGVSRALVENSRTLRLPT+LHERL LIRNA
Sbjct: 297  GGLIGLLRGIEKFDPSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTYLHERLSLIRNA 356

Query: 765  KARLEEKGITPSIDKIAENLNMSQKKIRNATEAISKVFSLDREAFPSLNGLPGESLHSYI 586
            KARLEEKGITPS++ IA +LNMSQKK+RNATEA SK++SLDREAFPSLNGLPGE+LHSYI
Sbjct: 357  KARLEEKGITPSVNNIAASLNMSQKKVRNATEASSKMYSLDREAFPSLNGLPGETLHSYI 416

Query: 585  ADNHIENNPWHGVDEWALKDEVDKLITLTLRERERDIIRLYYGLDNECLTWEDISRRIGL 406
            ADNH+ENNPWHGVD WALKDEV+ LI+ TLR+RER+IIRLYYGLDNECLTWEDIS+RIGL
Sbjct: 417  ADNHLENNPWHGVDVWALKDEVNNLISSTLRDREREIIRLYYGLDNECLTWEDISKRIGL 476

Query: 405  SRERVRQVGLVALEKLKHAARKRRLDAMLVQ 313
            SRERVRQVGLVALEKLKHAARKR+LDAML++
Sbjct: 477  SRERVRQVGLVALEKLKHAARKRQLDAMLIK 507


>ref|XP_007029766.1| Sigma factor A isoform 1 [Theobroma cacao]
            gi|508718371|gb|EOY10268.1| Sigma factor A isoform 1
            [Theobroma cacao]
          Length = 508

 Score =  660 bits (1703), Expect = 0.0
 Identities = 358/515 (69%), Positives = 416/515 (80%), Gaps = 14/515 (2%)
 Frame = -3

Query: 1812 MIMATAVIGLSTGKRLLLSSTFYYSDLSEKLACTTD---PHHQNASTKNAITAKRSSNFV 1642
            M+   AVIGL+TGKRLL SS+F YSD+ EKL+   D    HHQ +STK+ I AK+SSN  
Sbjct: 1    MMATAAVIGLTTGKRLL-SSSFSYSDIIEKLSYANDYGSSHHQTSSTKSLIVAKKSSNCS 59

Query: 1641 -----SNRRSQSIRALKEHHVDTASNPCTLEPWLIHGSSLLNEEISDPEYLVDAILLLQK 1477
                 SNRR+QSI+ALKEH VD+AS   T EP L  GS+ L  E  D +Y V+A+LLLQK
Sbjct: 60   QSLPSSNRRAQSIKALKEH-VDSASIVSTAEP-LFQGSNDLEVESYDLDYSVEALLLLQK 117

Query: 1476 SMLEKQWNLSAETTKTTS----RARKKIQVICSGTSARRRRMDSRKKVI--GRKVSNPGQ 1315
            SMLEKQW LS E T  T     +  KKI V CSG SAR+RR ++++K++   + +  P  
Sbjct: 118  SMLEKQWTLSFERTVFTESPSRKIHKKIPVTCSGVSARQRRFNTKRKILIQNKSIIQPN- 176

Query: 1314 LNTSKQWRSIISPELLQNSLKGYVKGVISDELLTHAQVVQLSQKIKAGXXXXXXXXXXXX 1135
               +KQ RS+ISPELLQ+ LKGYVKGV+SDELL+HA+VV+LS+KIKAG            
Sbjct: 177  ---AKQLRSLISPELLQSRLKGYVKGVVSDELLSHAEVVRLSKKIKAGLSLEEHRLRLKE 233

Query: 1134 XLGCEPSDEQLATSLRISRTDLQSKMIECSLAREKLAMSNIRLVMSIAQRYDNMGAEMAD 955
             LGCEPSDEQLATSL+ISR +L+SK+IECSLAREKLAMSN+RLVMSIAQRYDNMGAEM+D
Sbjct: 234  RLGCEPSDEQLATSLKISRAELRSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMSD 293

Query: 954  XXXXXXXXXXXXIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLI 775
                        IEKFDSSKG+KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLI
Sbjct: 294  LIQGGLIGLLRGIEKFDSSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLI 353

Query: 774  RNAKARLEEKGITPSIDKIAENLNMSQKKIRNATEAISKVFSLDREAFPSLNGLPGESLH 595
            RNAK RLEEKGITP+ID+IAE+LNMSQKK+RNATEA+SKVFSLDR+AFPSLNGLPGE+ H
Sbjct: 354  RNAKIRLEEKGITPTIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHH 413

Query: 594  SYIADNHIENNPWHGVDEWALKDEVDKLITLTLRERERDIIRLYYGLDNECLTWEDISRR 415
            SYIADNH+EN PWHGVDEWALKDEV++LIT+TL ERER+IIRLYYGLD E LTWEDIS+R
Sbjct: 414  SYIADNHVENIPWHGVDEWALKDEVNRLITITLGEREREIIRLYYGLDKESLTWEDISKR 473

Query: 414  IGLSRERVRQVGLVALEKLKHAARKRRLDAMLVQH 310
            IGLSRERVRQVGLVALEKLKHAARK++++AMLV+H
Sbjct: 474  IGLSRERVRQVGLVALEKLKHAARKKKMEAMLVKH 508


>ref|XP_006484698.1| PREDICTED: RNA polymerase sigma factor sigA [Citrus sinensis]
            gi|568862456|ref|XP_006484699.1| PREDICTED: RNA
            polymerase sigma factor sigA [Citrus sinensis]
            gi|568862458|ref|XP_006484700.1| PREDICTED: RNA
            polymerase sigma factor sigA [Citrus sinensis]
          Length = 508

 Score =  657 bits (1695), Expect = 0.0
 Identities = 355/513 (69%), Positives = 410/513 (79%), Gaps = 12/513 (2%)
 Frame = -3

Query: 1812 MIMATAVIGLSTGKRLLLSSTFYYSDLSEKLACTTD---PHHQNASTKNAITAKRSSNF- 1645
            M+   AVIGLS GKRLL SS+FYYSD+SEK +   D    + Q  STKN + AK+SSN+ 
Sbjct: 1    MMATAAVIGLSAGKRLL-SSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYN 59

Query: 1644 ----VSNRRSQSIRALKEHHVDTASNPCTLEPWLIHGSSLLNEEISDPEYLVDAILLLQK 1477
                 SNR++Q I+ALKEH VDT +   T EPW    +S+  EE S+ +Y V+A+LLLQK
Sbjct: 60   PSFPSSNRQTQPIKALKEH-VDT-NFASTAEPWAEPPNSI-EEESSELDYSVEALLLLQK 116

Query: 1476 SMLEKQWNLSAETTKTTS----RARKKIQVICSGTSARRRRMDSRKKVIGRKVSNPGQLN 1309
            SMLEKQWNLS E T  T     +  KK+ V CSG SAR+RR++S+KK++ +  S P Q N
Sbjct: 117  SMLEKQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSVPQQ-N 175

Query: 1308 TSKQWRSIISPELLQNSLKGYVKGVISDELLTHAQVVQLSQKIKAGXXXXXXXXXXXXXL 1129
             SKQ RS+ISPEL+QN LKGYVKGV+S+ELLTHA+VV+LS+KIK G             L
Sbjct: 176  GSKQLRSMISPELIQNHLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERL 235

Query: 1128 GCEPSDEQLATSLRISRTDLQSKMIECSLAREKLAMSNIRLVMSIAQRYDNMGAEMADXX 949
            GCEPS EQLA SLRISR +LQS ++ECSLAREKL MSN+RLVMSIAQRYDNMGA+MAD  
Sbjct: 236  GCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLV 295

Query: 948  XXXXXXXXXXIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRN 769
                      IEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP HLHERLGLIRN
Sbjct: 296  QGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRN 355

Query: 768  AKARLEEKGITPSIDKIAENLNMSQKKIRNATEAISKVFSLDREAFPSLNGLPGESLHSY 589
            AK RLEEKG+TPS+D+IAE LNMSQKK+RNATEAI KVFSLDREAFPSLNGLPGE+ HSY
Sbjct: 356  AKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSY 415

Query: 588  IADNHIENNPWHGVDEWALKDEVDKLITLTLRERERDIIRLYYGLDNECLTWEDISRRIG 409
            IADN +ENNPWHGVD+WALKDEV+KLI +TL ERER+IIRLYYGLD ECLTWEDIS+RIG
Sbjct: 416  IADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIG 475

Query: 408  LSRERVRQVGLVALEKLKHAARKRRLDAMLVQH 310
            LSRERVRQVGLVALEKLKHAARK++++AMLV+H
Sbjct: 476  LSRERVRQVGLVALEKLKHAARKKKMEAMLVKH 508


>emb|CDP04910.1| unnamed protein product [Coffea canephora]
          Length = 503

 Score =  654 bits (1687), Expect = 0.0
 Identities = 356/508 (70%), Positives = 408/508 (80%), Gaps = 10/508 (1%)
 Frame = -3

Query: 1806 MATA-VIGLSTGKRLLLSSTFYYSDL-SEKLACTTDPHHQNASTKNAITAKRSSNF---- 1645
            MATA VIGLS GKRLL SS  YYSDL S+KL+CT D H    S+ + + AKRSSNF    
Sbjct: 1    MATAAVIGLSPGKRLL-SSASYYSDLFSDKLSCTCD-HFLPVSSNSVLAAKRSSNFSPKF 58

Query: 1644 VSNRRSQSIRALKEHHVDTASNPCTLEPWLIHGSSLLNEEISDPEYLVDAILLLQKSMLE 1465
            +S  ++Q   ALKEH  +TA +  +++PWL H ++  +EE  DPE+ + A+LLLQKSMLE
Sbjct: 59   LSRHKTQPTYALKEH-AETAPDLSSIQPWL-HVNA--DEEFLDPEFSMQALLLLQKSMLE 114

Query: 1464 KQWNLSAET----TKTTSRARKKIQVICSGTSARRRRMDSRKKVIGRKVSNPGQLNTSKQ 1297
            KQWNLSAE     T T    +  +QV  SG+SARRRR+DSR+  +  + S+  QL  S+ 
Sbjct: 115  KQWNLSAENDYLVTGTPPTGKTCVQVTSSGSSARRRRIDSRRHPLSSRKSSVRQLRLSRH 174

Query: 1296 WRSIISPELLQNSLKGYVKGVISDELLTHAQVVQLSQKIKAGXXXXXXXXXXXXXLGCEP 1117
             RSIISPELLQN L GYVKGV+S+ELLTH +VVQLS+KIK G             LGCEP
Sbjct: 175  LRSIISPELLQNRLNGYVKGVVSEELLTHTEVVQLSEKIKQGLCFEEQKARLRKRLGCEP 234

Query: 1116 SDEQLATSLRISRTDLQSKMIECSLAREKLAMSNIRLVMSIAQRYDNMGAEMADXXXXXX 937
            S+EQLATSL+I+R DLQSK IECSLARE+LAMSN+RLVMSIAQRYDNMGAEMAD      
Sbjct: 235  SEEQLATSLKITRADLQSKFIECSLARERLAMSNVRLVMSIAQRYDNMGAEMADLIQGGL 294

Query: 936  XXXXXXIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKAR 757
                  IEK+DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERL LIRNAK R
Sbjct: 295  IGLLRGIEKYDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRNAKIR 354

Query: 756  LEEKGITPSIDKIAENLNMSQKKIRNATEAISKVFSLDREAFPSLNGLPGESLHSYIADN 577
            LEEKGITPS+DKIAE+LNMSQKK+RNATEA+ KV SLDREAFPSLNGLPGE+LHSYIADN
Sbjct: 355  LEEKGITPSVDKIAESLNMSQKKVRNATEAVCKVISLDREAFPSLNGLPGETLHSYIADN 414

Query: 576  HIENNPWHGVDEWALKDEVDKLITLTLRERERDIIRLYYGLDNECLTWEDISRRIGLSRE 397
             +ENNPWHGVD+WALKDEV+KLIT TLRERERDIIRLYYGL+NECLTWEDIS+RIGLSRE
Sbjct: 415  RLENNPWHGVDQWALKDEVNKLITSTLRERERDIIRLYYGLENECLTWEDISKRIGLSRE 474

Query: 396  RVRQVGLVALEKLKHAARKRRLDAMLVQ 313
            RVRQVGLVALEKLK+AARKRRL+AM+ +
Sbjct: 475  RVRQVGLVALEKLKYAARKRRLEAMIAR 502


>gb|KDO48032.1| hypothetical protein CISIN_1g010521mg [Citrus sinensis]
            gi|641828897|gb|KDO48033.1| hypothetical protein
            CISIN_1g010521mg [Citrus sinensis]
          Length = 508

 Score =  653 bits (1685), Expect = 0.0
 Identities = 354/513 (69%), Positives = 409/513 (79%), Gaps = 12/513 (2%)
 Frame = -3

Query: 1812 MIMATAVIGLSTGKRLLLSSTFYYSDLSEKLACTTD---PHHQNASTKNAITAKRSSNF- 1645
            M+   AVIGLS GKRLL SS+FYYSD+SEK +   D    + Q  STKN + AK+SSN+ 
Sbjct: 1    MMATAAVIGLSAGKRLL-SSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYN 59

Query: 1644 ----VSNRRSQSIRALKEHHVDTASNPCTLEPWLIHGSSLLNEEISDPEYLVDAILLLQK 1477
                 SNR++Q I+ALKEH VDT +   T EPW    +S+  EE S+ +Y V+A+LLLQK
Sbjct: 60   PSFPSSNRQTQPIKALKEH-VDT-NFASTAEPWAEPPNSI-EEESSELDYSVEALLLLQK 116

Query: 1476 SMLEKQWNLSAETTKTTS----RARKKIQVICSGTSARRRRMDSRKKVIGRKVSNPGQLN 1309
            SMLEKQWNLS E T  T     +  KK+ V CSG SAR+RR++S+KK++ +  S   Q N
Sbjct: 117  SMLEKQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSILQQ-N 175

Query: 1308 TSKQWRSIISPELLQNSLKGYVKGVISDELLTHAQVVQLSQKIKAGXXXXXXXXXXXXXL 1129
             SKQ RS+ISPEL+QN LKGYVKGV+S+ELLTHA+VV+LS+KIK G             L
Sbjct: 176  GSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERL 235

Query: 1128 GCEPSDEQLATSLRISRTDLQSKMIECSLAREKLAMSNIRLVMSIAQRYDNMGAEMADXX 949
            GCEPS EQLA SLRISR +LQS ++ECSLAREKL MSN+RLVMSIAQRYDNMGA+MAD  
Sbjct: 236  GCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLV 295

Query: 948  XXXXXXXXXXIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRN 769
                      IEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP HLHERLGLIRN
Sbjct: 296  QGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRN 355

Query: 768  AKARLEEKGITPSIDKIAENLNMSQKKIRNATEAISKVFSLDREAFPSLNGLPGESLHSY 589
            AK RLEEKG+TPS+D+IAE LNMSQKK+RNATEAI KVFSLDREAFPSLNGLPGE+ HSY
Sbjct: 356  AKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSY 415

Query: 588  IADNHIENNPWHGVDEWALKDEVDKLITLTLRERERDIIRLYYGLDNECLTWEDISRRIG 409
            IADN +ENNPWHGVD+WALKDEV+KLI +TL ERER+IIRLYYGLD ECLTWEDIS+RIG
Sbjct: 416  IADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIG 475

Query: 408  LSRERVRQVGLVALEKLKHAARKRRLDAMLVQH 310
            LSRERVRQVGLVALEKLKHAARK++++AMLV+H
Sbjct: 476  LSRERVRQVGLVALEKLKHAARKKKMEAMLVKH 508


>ref|XP_002524027.2| PREDICTED: RNA polymerase sigma factor sigA [Ricinus communis]
          Length = 509

 Score =  652 bits (1683), Expect = 0.0
 Identities = 354/513 (69%), Positives = 411/513 (80%), Gaps = 12/513 (2%)
 Frame = -3

Query: 1812 MIMATAVIGLSTGKRLLLSSTFYYSDLSEKLACTTD---PHHQNASTKNAITAKRSSNF- 1645
            M+   AVIGLS GKRLL SSTFYYSDL+EKL+   +    H+Q  STK  I AK+SSN+ 
Sbjct: 1    MMATAAVIGLSAGKRLL-SSTFYYSDLTEKLSSANEHGLTHYQITSTKTLIVAKKSSNYG 59

Query: 1644 ----VSNRRSQSIRALKEHHVDTASNPCTLEPWLIHGSSLLNEEISDPEYLVDAILLLQK 1477
                 SNR +QSI+ALKEH VDTAS P T        + +  EE SD +Y V+A+LLLQK
Sbjct: 60   PSFPSSNRNTQSIKALKEH-VDTASAPSTAATQFKTFNDM-EEESSDLDYSVEALLLLQK 117

Query: 1476 SMLEKQWNLSAETTKTTS----RARKKIQVICSGTSARRRRMDSRKKVIGRKVSNPGQLN 1309
            SMLEKQWNLS E T ++     +++KKI V CSG SAR+RR++ R+K + +      Q N
Sbjct: 118  SMLEKQWNLSFERTDSSDSPSRKSQKKIPVTCSGVSARQRRINIRRKNLSQSKFTV-QAN 176

Query: 1308 TSKQWRSIISPELLQNSLKGYVKGVISDELLTHAQVVQLSQKIKAGXXXXXXXXXXXXXL 1129
              KQ +S +SPELLQN LKGYVKGV+S+ELL+HA+VV+LS+ IKAG             L
Sbjct: 177  VFKQLKSAVSPELLQNRLKGYVKGVVSEELLSHAEVVRLSRIIKAGLSLEDHKSRLKERL 236

Query: 1128 GCEPSDEQLATSLRISRTDLQSKMIECSLAREKLAMSNIRLVMSIAQRYDNMGAEMADXX 949
            GC+PSDEQ+ATSL+ISR +LQSK I CSLAREKLAMSN+RLVMSIAQRYDNMGAEMAD  
Sbjct: 237  GCDPSDEQVATSLKISRAELQSKSIACSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLV 296

Query: 948  XXXXXXXXXXIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRN 769
                      IEKFDSSKGF+ISTYVYWWIRQGVSRALVENSRTLRLP HLHERLGLIRN
Sbjct: 297  QGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRN 356

Query: 768  AKARLEEKGITPSIDKIAENLNMSQKKIRNATEAISKVFSLDREAFPSLNGLPGESLHSY 589
            AK RLEEKG+TPSID+IAE+LN+SQKK+RNATEA+SKVFSLDREAFPSLNGLPGE+ HSY
Sbjct: 357  AKIRLEEKGVTPSIDRIAESLNISQKKVRNATEAVSKVFSLDREAFPSLNGLPGETHHSY 416

Query: 588  IADNHIENNPWHGVDEWALKDEVDKLITLTLRERERDIIRLYYGLDNECLTWEDISRRIG 409
            IADN +ENNPWHGVD+WALKDEV+KLI LTL+ERE++IIRLYYGLDNE LTWEDIS+RIG
Sbjct: 417  IADNCLENNPWHGVDDWALKDEVNKLINLTLQEREQEIIRLYYGLDNESLTWEDISKRIG 476

Query: 408  LSRERVRQVGLVALEKLKHAARKRRLDAMLVQH 310
            LSRERVRQVGLVALEKLKHAARK++L+AMLV+H
Sbjct: 477  LSRERVRQVGLVALEKLKHAARKKKLEAMLVKH 509


>ref|XP_006437403.1| hypothetical protein CICLE_v10031289mg [Citrus clementina]
            gi|557539599|gb|ESR50643.1| hypothetical protein
            CICLE_v10031289mg [Citrus clementina]
          Length = 508

 Score =  652 bits (1682), Expect = 0.0
 Identities = 353/513 (68%), Positives = 409/513 (79%), Gaps = 12/513 (2%)
 Frame = -3

Query: 1812 MIMATAVIGLSTGKRLLLSSTFYYSDLSEKLACTTD---PHHQNASTKNAITAKRSSNF- 1645
            M+   AVIGLS GKRLL SS+FYYSD+SEK +   D    + Q  STKN + AK+SSN+ 
Sbjct: 1    MMATAAVIGLSAGKRLL-SSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYN 59

Query: 1644 ----VSNRRSQSIRALKEHHVDTASNPCTLEPWLIHGSSLLNEEISDPEYLVDAILLLQK 1477
                 SNR++Q I+ALKEH VDT +   T EPW    +S+  EE S+ +Y V+A+LLLQK
Sbjct: 60   PSFPSSNRQTQPIKALKEH-VDT-NFASTAEPWAEPPNSI-EEESSELDYSVEALLLLQK 116

Query: 1476 SMLEKQWNLSAETTKTTS----RARKKIQVICSGTSARRRRMDSRKKVIGRKVSNPGQLN 1309
            SMLEKQWNLS E T  T     +  KK+ V CSG SAR+RR++S+KK++ +  S   Q N
Sbjct: 117  SMLEKQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSVLQQ-N 175

Query: 1308 TSKQWRSIISPELLQNSLKGYVKGVISDELLTHAQVVQLSQKIKAGXXXXXXXXXXXXXL 1129
             SKQ RS+ISPEL+QN LKGYVKGV+S+ELLTHA+VV+LS+KIK G             L
Sbjct: 176  GSKQLRSMISPELIQNHLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERL 235

Query: 1128 GCEPSDEQLATSLRISRTDLQSKMIECSLAREKLAMSNIRLVMSIAQRYDNMGAEMADXX 949
            GCEPS EQLA SLRISR +LQS ++ECSLAREKL MSN+RLVMSIAQRYDNMGA+MAD  
Sbjct: 236  GCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLI 295

Query: 948  XXXXXXXXXXIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRN 769
                      IEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP HLHERLGLIRN
Sbjct: 296  QGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRN 355

Query: 768  AKARLEEKGITPSIDKIAENLNMSQKKIRNATEAISKVFSLDREAFPSLNGLPGESLHSY 589
            AK RLEEKG+TP++D+IAE LNMSQKK+RNATEAI KVFSLDREAFPSLNGLPGE+ HSY
Sbjct: 356  AKLRLEEKGVTPAVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSY 415

Query: 588  IADNHIENNPWHGVDEWALKDEVDKLITLTLRERERDIIRLYYGLDNECLTWEDISRRIG 409
            IADN +ENNPWHGVD+WALKDEV+KLI +TL ERER+IIRLYYGLD ECLTWEDIS+RIG
Sbjct: 416  IADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIG 475

Query: 408  LSRERVRQVGLVALEKLKHAARKRRLDAMLVQH 310
            LSRERVRQVGLVALEKLKHAARK++++AMLV+H
Sbjct: 476  LSRERVRQVGLVALEKLKHAARKKKMEAMLVKH 508


>gb|EEF38395.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
          Length = 508

 Score =  651 bits (1680), Expect = 0.0
 Identities = 356/512 (69%), Positives = 412/512 (80%), Gaps = 13/512 (2%)
 Frame = -3

Query: 1806 MATA-VIGLSTGKRLLLSSTFYYSDLSEKLACTTD---PHHQNASTKNAITAKRSSNF-- 1645
            MATA VIGLS GKRLL SSTFYYSDL+EKL+   +    H+Q  STK  I AK+SSN+  
Sbjct: 1    MATAAVIGLSAGKRLL-SSTFYYSDLTEKLSSANEHGLTHYQITSTKTLIVAKKSSNYGP 59

Query: 1644 ---VSNRRSQSIRALKEHHVDTASNPCTLEPWLIHGSSLLNEEISDPEYLVDAILLLQKS 1474
                SNR +QSI+ALKEH VDTAS P T        + +  EE SD +Y V+A+LLLQKS
Sbjct: 60   SFPSSNRNTQSIKALKEH-VDTASAPSTAATQFKTFNDM-EEESSDLDYSVEALLLLQKS 117

Query: 1473 MLEKQWNLSAETTKTTS----RARKKIQVICSGTSARRRRMDSRKKVIGRKVSNPGQLNT 1306
            MLEKQWNLS E T ++     +++KKI V CSG SAR+RR++ R+K + +      Q N 
Sbjct: 118  MLEKQWNLSFERTDSSDSPSRKSQKKIPVTCSGVSARQRRINIRRKNLSQSKFTV-QANV 176

Query: 1305 SKQWRSIISPELLQNSLKGYVKGVISDELLTHAQVVQLSQKIKAGXXXXXXXXXXXXXLG 1126
             KQ +S +SPELLQN LKGYVKGV+S+ELL+HA+VV+LS+ IKAG             LG
Sbjct: 177  FKQLKSAVSPELLQNRLKGYVKGVVSEELLSHAEVVRLSRIIKAGLSLEDHKSRLKERLG 236

Query: 1125 CEPSDEQLATSLRISRTDLQSKMIECSLAREKLAMSNIRLVMSIAQRYDNMGAEMADXXX 946
            C+PSDEQ+ATSL+ISR +LQSK I CSLAREKLAMSN+RLVMSIAQRYDNMGAEMAD   
Sbjct: 237  CDPSDEQVATSLKISRAELQSKSIACSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQ 296

Query: 945  XXXXXXXXXIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNA 766
                     IEKFDSSKGF+ISTYVYWWIRQGVSRALVENSRTLRLP HLHERLGLIRNA
Sbjct: 297  GGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNA 356

Query: 765  KARLEEKGITPSIDKIAENLNMSQKKIRNATEAISKVFSLDREAFPSLNGLPGESLHSYI 586
            K RLEEKG+TPSID+IAE+LN+SQKK+RNATEA+SKVFSLDREAFPSLNGLPGE+ HSYI
Sbjct: 357  KIRLEEKGVTPSIDRIAESLNISQKKVRNATEAVSKVFSLDREAFPSLNGLPGETHHSYI 416

Query: 585  ADNHIENNPWHGVDEWALKDEVDKLITLTLRERERDIIRLYYGLDNECLTWEDISRRIGL 406
            ADN +ENNPWHGVD+WALKDEV+KLI LTL+ERE++IIRLYYGLDNE LTWEDIS+RIGL
Sbjct: 417  ADNCLENNPWHGVDDWALKDEVNKLINLTLQEREQEIIRLYYGLDNESLTWEDISKRIGL 476

Query: 405  SRERVRQVGLVALEKLKHAARKRRLDAMLVQH 310
            SRERVRQVGLVALEKLKHAARK++L+AMLV+H
Sbjct: 477  SRERVRQVGLVALEKLKHAARKKKLEAMLVKH 508


>ref|XP_012492333.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X2
            [Gossypium raimondii] gi|763777227|gb|KJB44350.1|
            hypothetical protein B456_007G247500 [Gossypium
            raimondii]
          Length = 508

 Score =  649 bits (1674), Expect = 0.0
 Identities = 350/513 (68%), Positives = 414/513 (80%), Gaps = 12/513 (2%)
 Frame = -3

Query: 1812 MIMATAVIGLSTGKRLLLSSTFYYSDLSEKLACTTD---PHHQNASTKNAITAKRSSNFV 1642
            M+   AVIGLSTGKRLL SS+F YS+  +KL+   D    ++Q  STK  + AKRSSN  
Sbjct: 1    MMATAAVIGLSTGKRLL-SSSFSYSETVDKLSYAGDYGSSYYQTPSTKTLMVAKRSSNCS 59

Query: 1641 -----SNRRSQSIRALKEHHVDTASNPCTLEPWLIHGSSLLNEEISDPEYLVDAILLLQK 1477
                 SNR +QSI+A KEH VDTAS+  T+EPW IHG++ L +E  D +Y V+A+LLLQK
Sbjct: 60   QNLPSSNRHTQSIKAFKEH-VDTASSISTVEPW-IHGTNDLEQESYDLDYSVEALLLLQK 117

Query: 1476 SMLEKQWNLSAETTK-TTSRARK---KIQVICSGTSARRRRMDSRKKVIGRKVSNPGQLN 1309
            SMLEKQW LS E T  T S +RK   K+ V CSG SAR+RR  +++K++ +  S      
Sbjct: 118  SMLEKQWTLSFERTMFTESPSRKTHNKVPVTCSGVSARQRRFSTKRKILSQNKSMIQP-- 175

Query: 1308 TSKQWRSIISPELLQNSLKGYVKGVISDELLTHAQVVQLSQKIKAGXXXXXXXXXXXXXL 1129
             +KQ RS+I PELLQN LKGYVKGV+S++LL+HA+VV+LS+KIKAG             L
Sbjct: 176  NAKQLRSLIGPELLQNRLKGYVKGVVSEDLLSHAEVVRLSRKIKAGLSLEEHRLRLKERL 235

Query: 1128 GCEPSDEQLATSLRISRTDLQSKMIECSLAREKLAMSNIRLVMSIAQRYDNMGAEMADXX 949
            GCEPSDEQLATSL++SR +L+S+ IECSLAREKLAMSN+RLVMSIAQRYDNMGAEM+D  
Sbjct: 236  GCEPSDEQLATSLKVSRAELRSRSIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMSDLI 295

Query: 948  XXXXXXXXXXIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRN 769
                      IEKFDSSKG+KISTYVYWWIRQGVSRALVENSRTLRLPT+LHERLGLIRN
Sbjct: 296  QGGLIGLLRGIEKFDSSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTYLHERLGLIRN 355

Query: 768  AKARLEEKGITPSIDKIAENLNMSQKKIRNATEAISKVFSLDREAFPSLNGLPGESLHSY 589
            AK RLEEKGITP+ID+IAE+LNMSQKK+RNATEA+SKVFSLDR+AFPSLNGLPGE+ HSY
Sbjct: 356  AKYRLEEKGITPTIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSY 415

Query: 588  IADNHIENNPWHGVDEWALKDEVDKLITLTLRERERDIIRLYYGLDNECLTWEDISRRIG 409
            IADNH+ENNPWHGVDEWALKDEV++LI +TL ERER+IIRLY+GLD E LTWEDIS+RIG
Sbjct: 416  IADNHVENNPWHGVDEWALKDEVNRLINITLGEREREIIRLYHGLDKESLTWEDISKRIG 475

Query: 408  LSRERVRQVGLVALEKLKHAARKRRLDAMLVQH 310
            LSRERVRQVGLVALEKLKHAARK++++AMLV+H
Sbjct: 476  LSRERVRQVGLVALEKLKHAARKKKMEAMLVKH 508


>ref|XP_009601815.1| PREDICTED: RNA polymerase sigma factor sigA-like [Nicotiana
            tomentosiformis]
          Length = 508

 Score =  649 bits (1674), Expect = 0.0
 Identities = 350/511 (68%), Positives = 403/511 (78%), Gaps = 11/511 (2%)
 Frame = -3

Query: 1812 MIMATAVIGLSTGKRLLLSSTFYYSDLSEKLACTTD---PHHQNASTKNAITAKRSSNF- 1645
            M+   AVIGLS GKRLL SS+FYYSDL+EKL CT+    P HQ  S KN ITAK+SS++ 
Sbjct: 1    MMATAAVIGLSAGKRLL-SSSFYYSDLNEKLNCTSGHSLPCHQVPSVKNVITAKKSSDYS 59

Query: 1644 ---VSNRRSQSIRALKEHHVDTASNPCTLEPWLIHGSSLLNEEISDPEYLVDAILLLQKS 1474
               VS+R+ QS +ALKEH VD   +P  +  W      L NE   D +  V+ +LLLQKS
Sbjct: 60   PSCVSSRKPQSAKALKEH-VDITDDPSDVPSWFEMYEQLQNES-DDEDDSVEVLLLLQKS 117

Query: 1473 MLEKQWNLSAETTKTTS----RARKKIQVICSGTSARRRRMDSRKKVIGRKVSNPGQLNT 1306
            MLEKQWNLS E T   S    +  KK  + CSGTSARRRRMDSR++V+ R  S    +  
Sbjct: 118  MLEKQWNLSLEQTLIASPQHEKKSKKTHITCSGTSARRRRMDSRQRVLDRNSSATPTI-A 176

Query: 1305 SKQWRSIISPELLQNSLKGYVKGVISDELLTHAQVVQLSQKIKAGXXXXXXXXXXXXXLG 1126
            +K  RSII PELLQN LKGYVKGV+S+ELLTHA+V+QLS+KI+ G             LG
Sbjct: 177  AKPLRSIIGPELLQNRLKGYVKGVVSEELLTHAEVLQLSKKIQVGLYLEEQKSRLKERLG 236

Query: 1125 CEPSDEQLATSLRISRTDLQSKMIECSLAREKLAMSNIRLVMSIAQRYDNMGAEMADXXX 946
            CEPSD+QLA SL++SRTDLQS +IECSLARE+LAMSN+RLVMSIAQRYDN+GAEMAD   
Sbjct: 237  CEPSDDQLAVSLKMSRTDLQSTLIECSLARERLAMSNVRLVMSIAQRYDNVGAEMADLVQ 296

Query: 945  XXXXXXXXXIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNA 766
                     IEKFD SKG+KISTYVYWWIRQGVSRALVENSRTLRLPT+LHERL LIRNA
Sbjct: 297  GGLIGLLRGIEKFDPSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTYLHERLSLIRNA 356

Query: 765  KARLEEKGITPSIDKIAENLNMSQKKIRNATEAISKVFSLDREAFPSLNGLPGESLHSYI 586
            K RLEEKGI PS++ IA +LNMSQKK+RNATEA SK++SLDREAFPSLNGLPGE+LHSYI
Sbjct: 357  KTRLEEKGIIPSVNDIAASLNMSQKKVRNATEASSKMYSLDREAFPSLNGLPGETLHSYI 416

Query: 585  ADNHIENNPWHGVDEWALKDEVDKLITLTLRERERDIIRLYYGLDNECLTWEDISRRIGL 406
            ADNH+ENNPWHGVD WALKDEV+ LI+ TLR+RER+IIRLYYGLDNECLTWEDIS+RIGL
Sbjct: 417  ADNHLENNPWHGVDIWALKDEVNNLISSTLRDREREIIRLYYGLDNECLTWEDISKRIGL 476

Query: 405  SRERVRQVGLVALEKLKHAARKRRLDAMLVQ 313
            SRERVRQVGLVALEKLKHAARKR+LDAML++
Sbjct: 477  SRERVRQVGLVALEKLKHAARKRQLDAMLIK 507


>ref|XP_012070278.1| PREDICTED: RNA polymerase sigma factor sigA [Jatropha curcas]
            gi|802585167|ref|XP_012070279.1| PREDICTED: RNA
            polymerase sigma factor sigA [Jatropha curcas]
            gi|643732469|gb|KDP39565.1| hypothetical protein
            JCGZ_02585 [Jatropha curcas]
          Length = 508

 Score =  649 bits (1673), Expect = 0.0
 Identities = 358/512 (69%), Positives = 412/512 (80%), Gaps = 13/512 (2%)
 Frame = -3

Query: 1806 MATA-VIGLSTGKRLLLSSTFYYSDLSEKLACTTD---PHHQNASTKNAITAKRSSNF-- 1645
            MATA VIGL  GKRLL SSTFYYSDL+EKL    D    H+Q++STKN I AK+SSN+  
Sbjct: 1    MATAAVIGLHAGKRLL-SSTFYYSDLTEKLFNVNDHGLTHYQSSSTKNVIVAKKSSNYGS 59

Query: 1644 ---VSNRRSQSIRALKEHHVDTASNPCTLEPWLIHGSSLLNEEISDPEYLVDAILLLQKS 1474
                SNR +QSI+ALKEH VDTAS+P T          +  E  SD +Y V+A+LLLQKS
Sbjct: 60   SFQSSNRNAQSIKALKEH-VDTASSPSTAATGFETFVDI-EEASSDLDYSVEALLLLQKS 117

Query: 1473 MLEKQWNLSAETTKTT----SRARKKIQVICSGTSARRRRMDSRKKVIGRKVSNPGQLNT 1306
            MLEKQWNLS E T ++    ++++K+I + CSG SAR+RR+++R+K + +  S   Q + 
Sbjct: 118  MLEKQWNLSFERTASSDSPSTKSQKQIPITCSGLSARQRRINTRRKNLIQSKSIV-QASG 176

Query: 1305 SKQWRSIISPELLQNSLKGYVKGVISDELLTHAQVVQLSQKIKAGXXXXXXXXXXXXXLG 1126
             KQ +S +SPELL N LKGYVKG++S+ELLTHA+VV LS+ IKAG             LG
Sbjct: 177  FKQLKSAVSPELLLNRLKGYVKGIVSEELLTHAEVVSLSRIIKAGLSLEEHKSRLKDRLG 236

Query: 1125 CEPSDEQLATSLRISRTDLQSKMIECSLAREKLAMSNIRLVMSIAQRYDNMGAEMADXXX 946
            C+PSDEQLATSLRIS  DL+SK+I CSLAREKLAMSN+RLVMSIAQRYDNMGAEMAD   
Sbjct: 237  CDPSDEQLATSLRISLADLRSKLIACSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQ 296

Query: 945  XXXXXXXXXIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNA 766
                     IEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP HLHERLGLIRNA
Sbjct: 297  GGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNA 356

Query: 765  KARLEEKGITPSIDKIAENLNMSQKKIRNATEAISKVFSLDREAFPSLNGLPGESLHSYI 586
            K RLEEKG+TPSID+IAE+LNMSQKK+RNATEAISKVFSLDREAFPSLNGLPGE+ HSYI
Sbjct: 357  KIRLEEKGVTPSIDRIAESLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETHHSYI 416

Query: 585  ADNHIENNPWHGVDEWALKDEVDKLITLTLRERERDIIRLYYGLDNECLTWEDISRRIGL 406
            ADN  ENNPWHGVDEWALKDEV+KLI LTL++RER+IIRLYYGLDNE LTWEDIS+RIGL
Sbjct: 417  ADNCPENNPWHGVDEWALKDEVNKLIDLTLQQREREIIRLYYGLDNETLTWEDISKRIGL 476

Query: 405  SRERVRQVGLVALEKLKHAARKRRLDAMLVQH 310
            SRERVRQVGLVALEKLKHAARK++L+AMLV+H
Sbjct: 477  SRERVRQVGLVALEKLKHAARKKKLEAMLVKH 508


>ref|XP_008234513.1| PREDICTED: RNA polymerase sigma factor sigA [Prunus mume]
          Length = 512

 Score =  644 bits (1661), Expect = 0.0
 Identities = 355/517 (68%), Positives = 402/517 (77%), Gaps = 16/517 (3%)
 Frame = -3

Query: 1812 MIMATAVIGLSTGKRLLLSSTFYYSDLSEKLACTTDPHH----QNASTKNAITAKRSSNF 1645
            M+   AVIGLSTGKRLL +S+FYYSD++EKL    D H       +STKN +TA++ SN 
Sbjct: 1    MMATAAVIGLSTGKRLL-NSSFYYSDITEKLFHLNDHHGFLHCHFSSTKNVVTARKPSNC 59

Query: 1644 VS-----NRRSQSIRALKEHHVDTASNPCTLEPWLIHGSSLLNEEISDPEYLVDAILLLQ 1480
             S     NR  QSIRALKEH V TAS P +         + L EE SD EY V+A+LLLQ
Sbjct: 60   SSRFPSSNRPQQSIRALKEH-VHTASAPSSATQQWFQELNDLEEESSDLEYSVEALLLLQ 118

Query: 1479 KSMLEKQWNLSAE-------TTKTTSRARKKIQVICSGTSARRRRMDSRKKVIGRKVSNP 1321
            KSMLEKQWNLS E       T+KTT    KKI V CSG SAR+RRM S K+    K +  
Sbjct: 119  KSMLEKQWNLSFEKKVLRDSTSKTTD---KKIPVTCSGVSARQRRMTSTKRKTLNKSTCV 175

Query: 1320 GQLNTSKQWRSIISPELLQNSLKGYVKGVISDELLTHAQVVQLSQKIKAGXXXXXXXXXX 1141
               +T+K  R+I+SPELLQN +KGYVKGV+S++LLTH +VV+LS+KIK G          
Sbjct: 176  MHPSTNKPLRAIVSPELLQNRVKGYVKGVLSEDLLTHTEVVRLSKKIKVGLSVEEHKSRL 235

Query: 1140 XXXLGCEPSDEQLATSLRISRTDLQSKMIECSLAREKLAMSNIRLVMSIAQRYDNMGAEM 961
               LGCEPSDEQLATSLRISR  LQSK+IEC LAREKLAMSN+RLVMSIAQRYDNMGAEM
Sbjct: 236  KERLGCEPSDEQLATSLRISRAQLQSKLIECKLAREKLAMSNVRLVMSIAQRYDNMGAEM 295

Query: 960  ADXXXXXXXXXXXXIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLG 781
            AD            IEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLG
Sbjct: 296  ADLIQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLG 355

Query: 780  LIRNAKARLEEKGITPSIDKIAENLNMSQKKIRNATEAISKVFSLDREAFPSLNGLPGES 601
            LIRNAK RLEEKGITPSID+IAE+LNMS+KK+RNATEAISKVFSLDR+AFPSLNGLPGE+
Sbjct: 356  LIRNAKIRLEEKGITPSIDRIAESLNMSKKKVRNATEAISKVFSLDRDAFPSLNGLPGET 415

Query: 600  LHSYIADNHIENNPWHGVDEWALKDEVDKLITLTLRERERDIIRLYYGLDNECLTWEDIS 421
             HSYIADN +EN PWHGVD WALK+EV KLI + L ERER+II+LYYGL+NECLTWEDIS
Sbjct: 416  HHSYIADNRLENIPWHGVDAWALKEEVSKLINMMLGEREREIIQLYYGLENECLTWEDIS 475

Query: 420  RRIGLSRERVRQVGLVALEKLKHAARKRRLDAMLVQH 310
            +RIGLSRERVRQVGLVALEKLKHAARKR ++AML++H
Sbjct: 476  KRIGLSRERVRQVGLVALEKLKHAARKREMEAMLLKH 512


>ref|XP_009767654.1| PREDICTED: RNA polymerase sigma factor sigA-like [Nicotiana
            sylvestris]
          Length = 504

 Score =  644 bits (1660), Expect = 0.0
 Identities = 349/506 (68%), Positives = 397/506 (78%), Gaps = 10/506 (1%)
 Frame = -3

Query: 1797 AVIGLSTGKRLLLSSTFYYSDLSEKLACTTDPHHQNASTKNAITAKRSSNF----VSNRR 1630
            A+IGLS G R+L SS+F YSDL+EKL+C +DP HQ  STKN I AK+SSN+    VSNR+
Sbjct: 3    AIIGLSAGNRIL-SSSFSYSDLTEKLSCASDPCHQFPSTKNVINAKKSSNYSPSYVSNRK 61

Query: 1629 SQSIRALKEHHVDTASNPCTL-EPWLIHGSSLLNEEISDPEYLVDAILLLQKSMLEKQWN 1453
             QS++ALKEH VD ASN  +  EPW+     L N   S+ E  V+ +LLLQKSMLE QWN
Sbjct: 62   KQSVKALKEH-VDIASNRDSYTEPWVQMFKQLQNGSCSE-EDSVEVLLLLQKSMLENQWN 119

Query: 1452 LSAETTKTTS-----RARKKIQVICSGTSARRRRMDSRKKVIGRKVSNPGQLNTSKQWRS 1288
            LSAE   T S      ++KK+Q+ CSGTSARRRRMD+RK+ +  K S     ++SK+ R 
Sbjct: 120  LSAEKAMTDSLQNEKNSKKKMQITCSGTSARRRRMDTRKRDLLPKNSATSD-SSSKRLRP 178

Query: 1287 IISPELLQNSLKGYVKGVISDELLTHAQVVQLSQKIKAGXXXXXXXXXXXXXLGCEPSDE 1108
            +I PELLQN  KGY+ GV+  ELLTH +VVQLS+KIK G             LGCEPSD+
Sbjct: 179  VIGPELLQNRSKGYINGVVGQELLTHTEVVQLSKKIKFGLYLEEQKSRLKERLGCEPSDD 238

Query: 1107 QLATSLRISRTDLQSKMIECSLAREKLAMSNIRLVMSIAQRYDNMGAEMADXXXXXXXXX 928
            QLA SL+ISR DL+S +IECSLAREKLAMSN+RLVMSIAQRYD  G EMAD         
Sbjct: 239  QLAVSLKISRADLRSTLIECSLAREKLAMSNVRLVMSIAQRYDTTGTEMADLIQGGLIGL 298

Query: 927  XXXIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKARLEE 748
               IEKFD S+GFKISTYVYWWIRQGVSRALVENSRTLRLP HLHERL LIRNAK +L+E
Sbjct: 299  LRGIEKFDHSRGFKISTYVYWWIRQGVSRALVENSRTLRLPIHLHERLSLIRNAKIKLKE 358

Query: 747  KGITPSIDKIAENLNMSQKKIRNATEAISKVFSLDREAFPSLNGLPGESLHSYIADNHIE 568
             GITPSI+KIAE LNMSQKK+RNATEA SKVFSLDREAFPSLNGLPGE+LHSYIADN +E
Sbjct: 359  NGITPSIEKIAECLNMSQKKVRNATEASSKVFSLDREAFPSLNGLPGETLHSYIADNRLE 418

Query: 567  NNPWHGVDEWALKDEVDKLITLTLRERERDIIRLYYGLDNECLTWEDISRRIGLSRERVR 388
            N PWHGVDEW LKDEV+ LI+ TLRERE +IIRLYYGLDNECLTWEDISRRIGLSRERVR
Sbjct: 419  NIPWHGVDEWMLKDEVNNLISSTLRERESEIIRLYYGLDNECLTWEDISRRIGLSRERVR 478

Query: 387  QVGLVALEKLKHAARKRRLDAMLVQH 310
            QVGLVALEKLKHAAR+RRLDAMLV+H
Sbjct: 479  QVGLVALEKLKHAARRRRLDAMLVKH 504