BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia27_contig00000692
         (1396 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_011084487.1| PREDICTED: RNA polymerase sigma factor sigE,...   521   e-180
ref|XP_012858574.1| PREDICTED: RNA polymerase sigma factor sigE,...   472   e-160
ref|XP_006350582.1| PREDICTED: RNA polymerase sigma factor sigE,...   471   e-160
ref|XP_009601650.1| PREDICTED: RNA polymerase sigma factor sigE,...   464   e-157
emb|CDP05091.1| unnamed protein product [Coffea canephora]            464   e-157
ref|XP_009785134.1| PREDICTED: RNA polymerase sigma factor sigE,...   463   e-157
ref|XP_015070568.1| PREDICTED: RNA polymerase sigma factor sigE,...   463   e-157
ref|XP_004234179.1| PREDICTED: RNA polymerase sigma factor sigE,...   457   e-154
ref|XP_012852163.1| PREDICTED: RNA polymerase sigma factor sigE,...   454   e-153
ref|XP_007219009.1| hypothetical protein PRUPE_ppa004259mg [Prun...   439   e-149
ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor sigE,...   442   e-148
ref|XP_007219010.1| hypothetical protein PRUPE_ppa004259mg [Prun...   439   e-147
ref|XP_015878246.1| PREDICTED: RNA polymerase sigma factor sigE,...   438   e-147
gb|KHG11410.1| RNA polymerase sigma factor rpoD [Gossypium arbor...   436   e-146
gb|KJB52622.1| hypothetical protein B456_008G270500 [Gossypium r...   435   e-145
ref|XP_012440029.1| PREDICTED: RNA polymerase sigma factor sigE,...   432   e-144
ref|XP_007038959.1| Sigma factor E isoform 1 [Theobroma cacao] g...   431   e-144
gb|AKC88737.1| sigma factor [Francoa sonchifolia]                     427   e-143
ref|XP_006376620.1| RNA polymerase sigma subunit SigE family pro...   426   e-142
ref|XP_011001910.1| PREDICTED: RNA polymerase sigma factor sigE,...   423   e-141

>ref|XP_011084487.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Sesamum indicum]
          Length = 518

 Score =  521 bits (1343), Expect = e-180
 Identities = 275/353 (77%), Positives = 303/353 (85%), Gaps = 2/353 (0%)
 Frame = +2

Query: 344  MGVVTVSSSAARTPVGLNTRCSTRVSVLKRPVILSFKSDKSKNTALIAPRESVTLPVEVN 523
            MGVVTVSSSAARTP+GL+ R  TRVS+ +R VILSFK+DK+KN ALIAPRESV LP+E  
Sbjct: 1    MGVVTVSSSAARTPLGLDARYLTRVSLCRRQVILSFKNDKNKNIALIAPRESVALPLEAK 60

Query: 524  KENGKRLRKVKKRSERVSAVSTDEAPPSTLELDYSEAAAKLENIYKRSPATTVSDEDVXX 703
            KE  KR RKVKK  ERVSAVSTDEA PST++LDY+EAAAKLE IYKRSPATTVS E+V  
Sbjct: 61   KEKEKRSRKVKKLVERVSAVSTDEASPSTIDLDYNEAAAKLEYIYKRSPATTVSLEEVKD 120

Query: 704  XXXXXXXXXXXXNGEVEETEKKTAENFVRSQRKG-KRMGLEKRIALKMKKEGEFVASS-E 877
                         GE EE EKKTA++ VRS+RK  +R+ LEKRIALK  KE +F+ASS +
Sbjct: 121  QRVKRRRPLRKRTGEAEEAEKKTADDVVRSKRKKERRLTLEKRIALKTNKEVDFLASSSQ 180

Query: 878  KKKQSKNDEDEKIDRLVRDYSSSTDLVSLDWKKMKIPPVLPSTEHSWLFKLMQPMKEILK 1057
            K+KQ KNDEDEKIDRLVRDYS+STDLVSLDWKKMKIPPVLPS+EH+WLFKLMQPMK IL+
Sbjct: 181  KRKQRKNDEDEKIDRLVRDYSASTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKAILQ 240

Query: 1058 VKENLQTDLGRDVTDDELAEATNMDVVHLRKQLEVGRAARNKLIKHNLRLVLFVMNKYFQ 1237
            VKENLQ DLGR+VTDDELAEAT  + V LRKQLEVGRAARNKLIKHNLRLVLFVMNKYFQ
Sbjct: 241  VKENLQNDLGREVTDDELAEATKTNAVQLRKQLEVGRAARNKLIKHNLRLVLFVMNKYFQ 300

Query: 1238 DFTNGPRFQDLCQAGVKGLITAIDRFEPKRKFRLSTYGLFWIRHAIVRSMTLS 1396
            DF+NGPRFQDLCQAGVKGLITAIDRFEPKRKFRLSTY LFWIRHAI+RSMTLS
Sbjct: 301  DFSNGPRFQDLCQAGVKGLITAIDRFEPKRKFRLSTYSLFWIRHAIIRSMTLS 353


>ref|XP_012858574.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Erythranthe guttata]
            gi|604299780|gb|EYU19623.1| hypothetical protein
            MIMGU_mgv1a020453mg [Erythranthe guttata]
          Length = 515

 Score =  472 bits (1215), Expect = e-160
 Identities = 242/352 (68%), Positives = 286/352 (81%), Gaps = 1/352 (0%)
 Frame = +2

Query: 344  MGVVTVSSSAARTPVGLNTRCSTRVSVLKRPVILSFKSDKSKNTALIAPRESVTLPVEVN 523
            MGVVTVS+SA+RT +GLN R  TRVS+L+RPV+ +FK+DK K   LI+PRES  LP+E  
Sbjct: 1    MGVVTVSTSASRTSLGLNERYLTRVSILRRPVVFAFKNDKIKKIVLISPRESAALPLEAT 60

Query: 524  KENGKRLRKVKKRSERVSAVSTDEAPPSTLELDYSEAAAKLENIYKRSPATTVSDEDVXX 703
            K+N KRLRKVKKR+ERV+AVSTDEAPPST++LDY+EAAAKLE I+K+SP   +S ++V  
Sbjct: 61   KDNEKRLRKVKKRAERVNAVSTDEAPPSTIDLDYNEAAAKLEYIFKQSPTVEISVDEVKD 120

Query: 704  XXXXXXXXXXXXNGEVEETEKKTAENFVRSQR-KGKRMGLEKRIALKMKKEGEFVASSEK 880
                          E  +  +K A+N VRS+R K +R+ LEKRIAL+ KKE E  A  ++
Sbjct: 121  VRVKRRQPRKRT--EYADEAEKIADNVVRSRRSKDRRLNLEKRIALRTKKEDESTAIFQR 178

Query: 881  KKQSKNDEDEKIDRLVRDYSSSTDLVSLDWKKMKIPPVLPSTEHSWLFKLMQPMKEILKV 1060
            +K  KNDEDEKIDRLVRDYS+S+DLVSLDWKKMKIPPVLPS EH WLFKLMQP+K IL V
Sbjct: 179  RKTGKNDEDEKIDRLVRDYSASSDLVSLDWKKMKIPPVLPSAEHVWLFKLMQPVKAILDV 238

Query: 1061 KENLQTDLGRDVTDDELAEATNMDVVHLRKQLEVGRAARNKLIKHNLRLVLFVMNKYFQD 1240
            KE ++ +LGR+ TD++LA A NMD V LRKQLE+GRAARNKLIKHNLRLVLFVMNKYFQD
Sbjct: 239  KETIENNLGREPTDEKLATAINMDTVQLRKQLEIGRAARNKLIKHNLRLVLFVMNKYFQD 298

Query: 1241 FTNGPRFQDLCQAGVKGLITAIDRFEPKRKFRLSTYGLFWIRHAIVRSMTLS 1396
            F+NG RFQDLCQAG KGLITAIDRFEPKRK RLSTYGLFWIRH+I+RSMTLS
Sbjct: 299  FSNGSRFQDLCQAGAKGLITAIDRFEPKRKLRLSTYGLFWIRHSIIRSMTLS 350


>ref|XP_006350582.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Solanum tuberosum]
          Length = 516

 Score =  471 bits (1212), Expect = e-160
 Identities = 249/353 (70%), Positives = 289/353 (81%), Gaps = 2/353 (0%)
 Frame = +2

Query: 344  MGVVTVSSSAARTPVGLNTRCSTRVSVLKRPVILSFKSDKSKNTALIAPRESVTLPVEVN 523
            MGVVTVSSSA+R+P+GL++R STR+  LKRPVI+SFK DK+KNT LIAP+ES++L +E +
Sbjct: 1    MGVVTVSSSASRSPLGLSSRFSTRLCPLKRPVIVSFKKDKTKNTTLIAPKESISLSIETS 60

Query: 524  KENGKRLRKVKKRSERVSAVSTDEAPPSTLELDYSEAAAKLENIYKRSPATTVSDEDVXX 703
            KEN KR R+V KRSERV AV+  EA PSTLELDYSEAAAKLE+IYKRS  T  S+ +V  
Sbjct: 61   KENEKRSRRVSKRSERVHAVAI-EASPSTLELDYSEAAAKLESIYKRSLETASSNTEVQD 119

Query: 704  XXXXXXXXXXXXNGEV-EETEKKTAENFVRSQRK-GKRMGLEKRIALKMKKEGEFVASSE 877
                          E  EE +K+ A+N V+++RK  KR+ L++RIAL   KEGE VASSE
Sbjct: 120  HLVKRRPRTRKRIVEGDEEAKKEVADNVVKNRRKTSKRLNLDQRIALLKNKEGEMVASSE 179

Query: 878  KKKQSKNDEDEKIDRLVRDYSSSTDLVSLDWKKMKIPPVLPSTEHSWLFKLMQPMKEILK 1057
            ++K  ++ EDEKID+LVR+YS +TDL SLDWKKMKIPPVLPS+EH WLFKLMQPMK IL+
Sbjct: 180  RRKLKEDTEDEKIDKLVREYSGATDLASLDWKKMKIPPVLPSSEHVWLFKLMQPMKAILQ 239

Query: 1058 VKENLQTDLGRDVTDDELAEATNMDVVHLRKQLEVGRAARNKLIKHNLRLVLFVMNKYFQ 1237
            VKENLQ DLGR+ TD E+AEATNMD   LRK+LEVGRAARNKLIKHNLRLVLFVMNKYFQ
Sbjct: 240  VKENLQNDLGREPTDGEVAEATNMDASELRKKLEVGRAARNKLIKHNLRLVLFVMNKYFQ 299

Query: 1238 DFTNGPRFQDLCQAGVKGLITAIDRFEPKRKFRLSTYGLFWIRHAIVRSMTLS 1396
            DF NG RFQDLCQAGVKGLITAIDRFEP RKFRLSTYGLFWIRHAI+RSMT S
Sbjct: 300  DFANGSRFQDLCQAGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRSMTTS 352


>ref|XP_009601650.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Nicotiana tomentosiformis]
          Length = 519

 Score =  464 bits (1195), Expect = e-157
 Identities = 244/356 (68%), Positives = 287/356 (80%), Gaps = 5/356 (1%)
 Frame = +2

Query: 344  MGVVTVSSSAARTPVGLNTRCSTRVSVLKRPVILSFKSDKSKNTALIAPRESVTLPVEVN 523
            MGVVTVSSSA+R+P+GL+T  S  +  LKRPV++SFK DK+K T L+AP+ES++LP+E +
Sbjct: 1    MGVVTVSSSASRSPLGLSTSFSAHLCPLKRPVVVSFKKDKTKKTTLVAPKESISLPIETS 60

Query: 524  KENGKRLRKVKKRSERVSAVSTD-EAPPSTLELDYSEAAAKLENIYKRSPATTVSD---E 691
            KEN KR R+V KR+ERV AVS D EA PSTLELDYSEAAAKLE+IYKRS  T  SD   +
Sbjct: 61   KENEKRSRRVSKRTERVHAVSIDIEASPSTLELDYSEAAAKLESIYKRSLETDSSDTEAK 120

Query: 692  DVXXXXXXXXXXXXXXNGEVEETEKKTAENFVRSQRK-GKRMGLEKRIALKMKKEGEFVA 868
            D                G  EE +K  A+N V+++RK  KR+ L++RIAL   KEGE VA
Sbjct: 121  DHQIVKRRQRTRKRIIEGN-EEAKKGIADNVVKNRRKKSKRLNLDQRIALLKNKEGELVA 179

Query: 869  SSEKKKQSKNDEDEKIDRLVRDYSSSTDLVSLDWKKMKIPPVLPSTEHSWLFKLMQPMKE 1048
            SS+K++  ++ EDEKID+LVR+YS +TDL SLDWKKMKIPPVLPS+EH+WLFKLMQPMK 
Sbjct: 180  SSQKRELKEDTEDEKIDKLVREYSGATDLASLDWKKMKIPPVLPSSEHAWLFKLMQPMKA 239

Query: 1049 ILKVKENLQTDLGRDVTDDELAEATNMDVVHLRKQLEVGRAARNKLIKHNLRLVLFVMNK 1228
            IL+VKENLQ DLGR+ TD E+AEATN+D   LRK LEVGRAARNKLIKHNLRLVLFV+NK
Sbjct: 240  ILQVKENLQNDLGREPTDAEVAEATNIDASELRKNLEVGRAARNKLIKHNLRLVLFVINK 299

Query: 1229 YFQDFTNGPRFQDLCQAGVKGLITAIDRFEPKRKFRLSTYGLFWIRHAIVRSMTLS 1396
            YFQDF NGP+FQDLCQAGVKGLITAIDRFEP RKFRLSTYGLFWIRHAI+RSMT S
Sbjct: 300  YFQDFANGPKFQDLCQAGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRSMTTS 355


>emb|CDP05091.1| unnamed protein product [Coffea canephora]
          Length = 530

 Score =  464 bits (1194), Expect = e-157
 Identities = 244/366 (66%), Positives = 288/366 (78%), Gaps = 15/366 (4%)
 Frame = +2

Query: 344  MGVVTVSSSAARTPVGLNTRCSTRVSVLKRPVILSFKSDKSKNTALIAPRESVTLPVEVN 523
            MGVVTVSSSAAR+P+GLN + +TR+S  +RP ++ FK+ K+KN AL+APRES++LPVE +
Sbjct: 1    MGVVTVSSSAARSPLGLNAKLATRISQPRRPSLVPFKNGKTKNAALVAPRESLSLPVEGS 60

Query: 524  KENGKRLRKVKKRSERVSAVSTDEAPPSTLELDYSEAAAKLENIYKRSPATTVSDEDVXX 703
              N KRL++V KR ERV AVS  EA  STLELDY+EAAAKLENIYK SPAT VSD +V  
Sbjct: 61   NVNEKRLKRVVKRPERVKAVSALEAASSTLELDYNEAAAKLENIYKLSPATKVSDMEVND 120

Query: 704  XXXXXXXXXXXXNGEVE-ETEKKTAENFVRSQRK-GKRMGLEKRIALKMKKEGEFVASSE 877
                          E   E EK T    VRS RK  KR+ L+KR+ L+ K++ E ++SS+
Sbjct: 121  LGMKRDQQRRKRMKEANVEAEKGTNYTVVRSPRKKSKRLSLDKRVTLRKKRDSEAISSSQ 180

Query: 878  KKKQSK-------------NDEDEKIDRLVRDYSSSTDLVSLDWKKMKIPPVLPSTEHSW 1018
            K+K S+             +DEDEKI+RL+R+YS STD  SLDWKKMKIPPVLPS+EHSW
Sbjct: 181  KRKSSEGDEDEEINRKSSEDDEDEKINRLLREYSGSTDFTSLDWKKMKIPPVLPSSEHSW 240

Query: 1019 LFKLMQPMKEILKVKENLQTDLGRDVTDDELAEATNMDVVHLRKQLEVGRAARNKLIKHN 1198
            LFKLMQPMK I++VKENL  DLGR+ TD ELAEATN+DV+HLRK ++VG+AARNKLIKHN
Sbjct: 241  LFKLMQPMKAIIQVKENLPNDLGREPTDGELAEATNLDVLHLRKDIKVGQAARNKLIKHN 300

Query: 1199 LRLVLFVMNKYFQDFTNGPRFQDLCQAGVKGLITAIDRFEPKRKFRLSTYGLFWIRHAIV 1378
            LRLVLFVMNKYFQDFTNGP+FQDLCQAGVKGLITAIDRFEPKRKFRLSTYGLFWIRHAI+
Sbjct: 301  LRLVLFVMNKYFQDFTNGPKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYGLFWIRHAII 360

Query: 1379 RSMTLS 1396
            RSMTLS
Sbjct: 361  RSMTLS 366


>ref|XP_009785134.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Nicotiana sylvestris]
          Length = 519

 Score =  463 bits (1192), Expect = e-157
 Identities = 244/356 (68%), Positives = 287/356 (80%), Gaps = 5/356 (1%)
 Frame = +2

Query: 344  MGVVTVSSSAARTPVGLNTRCSTRVSVLKRPVILSFKSDKSKNTALIAPRESVTLPVEVN 523
            MGVVTVSSSA+R+P+GL+TR S  +  LKRPV++SFK DK+K T L+AP+ES++LP+E +
Sbjct: 1    MGVVTVSSSASRSPLGLSTRFSAHLCPLKRPVVVSFKKDKTKKTTLVAPKESISLPIETS 60

Query: 524  KENGKRLRKVKKRSERVSAVSTD-EAPPSTLELDYSEAAAKLENIYKRSPATTVSD---E 691
            KEN KR R+V KR+ERV AVS D EA  S LELDYSEAAAKLE+IYKRS  T  SD   +
Sbjct: 61   KENEKRSRRVSKRTERVHAVSIDIEASTSPLELDYSEAAAKLESIYKRSLETDSSDTEAK 120

Query: 692  DVXXXXXXXXXXXXXXNGEVEETEKKTAENFVRSQRK-GKRMGLEKRIALKMKKEGEFVA 868
            D                G+ EET+K  A+N V+++RK  KR+ L++RIAL   KEGE VA
Sbjct: 121  DHQIVKRRQRTRKRIVEGD-EETKKGIADNVVKNRRKKSKRLNLDQRIALLKNKEGELVA 179

Query: 869  SSEKKKQSKNDEDEKIDRLVRDYSSSTDLVSLDWKKMKIPPVLPSTEHSWLFKLMQPMKE 1048
            SS+K++  ++ EDEKID+LVR+YS +TDL SLDWKKMKIPPVLPS+EH+WLFKLMQPMK 
Sbjct: 180  SSQKRELKEDTEDEKIDKLVREYSGATDLASLDWKKMKIPPVLPSSEHAWLFKLMQPMKA 239

Query: 1049 ILKVKENLQTDLGRDVTDDELAEATNMDVVHLRKQLEVGRAARNKLIKHNLRLVLFVMNK 1228
            IL+VKENLQ DLGR+ TD E AEATN+D   LRK LEVGRAARNKLIKHNLRLVLFV+NK
Sbjct: 240  ILQVKENLQNDLGREPTDAEAAEATNIDASELRKNLEVGRAARNKLIKHNLRLVLFVINK 299

Query: 1229 YFQDFTNGPRFQDLCQAGVKGLITAIDRFEPKRKFRLSTYGLFWIRHAIVRSMTLS 1396
            YFQDF NGP+FQDLCQAGVKGLITAIDRFEP RKFRLSTYGLFWIRHAI+RSMT S
Sbjct: 300  YFQDFANGPKFQDLCQAGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRSMTTS 355


>ref|XP_015070568.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial isoform X1 [Solanum
            pennellii]
          Length = 516

 Score =  463 bits (1191), Expect = e-157
 Identities = 241/353 (68%), Positives = 287/353 (81%), Gaps = 2/353 (0%)
 Frame = +2

Query: 344  MGVVTVSSSAARTPVGLNTRCSTRVSVLKRPVILSFKSDKSKNTALIAPRESVTLPVEVN 523
            MGVVTVSSSA+R+P+GL++R S R+  LKRPVI+SFK DK+KNT L++P+ES++LP+E +
Sbjct: 1    MGVVTVSSSASRSPLGLSSRFSARLCPLKRPVIVSFKKDKTKNTTLVSPKESISLPIETS 60

Query: 524  KENGKRLRKVKKRSERVSAVSTDEAPPSTLELDYSEAAAKLENIYKRSPATTVSDEDVXX 703
            KEN KR R+V KR+ERV AV T EAPPSTLELDYSEAAAKLE+IYKRS  T   + +V  
Sbjct: 61   KENEKRSRRVTKRTERVHAV-TIEAPPSTLELDYSEAAAKLESIYKRSLETASPNTEVKD 119

Query: 704  XXXXXXXXXXXXNGEV-EETEKKTAENFVRSQRK-GKRMGLEKRIALKMKKEGEFVASSE 877
                          E  EE +K+  +N V+++RK  KR+ L++RIAL   KEG+ +ASSE
Sbjct: 120  HLVKRRPRTRKRIVESDEEAKKEVVDNVVKNRRKKSKRLNLDQRIALLKNKEGKMLASSE 179

Query: 878  KKKQSKNDEDEKIDRLVRDYSSSTDLVSLDWKKMKIPPVLPSTEHSWLFKLMQPMKEILK 1057
            ++K  ++ EDEKID+LVR+YS +TDL SLDWKKMKIPPVLPS+EH+WLFKLMQPMK IL+
Sbjct: 180  RRKLKEDTEDEKIDKLVREYSGATDLASLDWKKMKIPPVLPSSEHTWLFKLMQPMKAILQ 239

Query: 1058 VKENLQTDLGRDVTDDELAEATNMDVVHLRKQLEVGRAARNKLIKHNLRLVLFVMNKYFQ 1237
            VKENLQ DLGR+ TD E+AEATN+D   LRK+LE GRAARNKLIKHNLRLVLFVMNKYFQ
Sbjct: 240  VKENLQNDLGREPTDGEVAEATNIDASELRKKLEAGRAARNKLIKHNLRLVLFVMNKYFQ 299

Query: 1238 DFTNGPRFQDLCQAGVKGLITAIDRFEPKRKFRLSTYGLFWIRHAIVRSMTLS 1396
            DF N  RFQDLCQAGVKGLITAIDRFEP RKFRLSTYGLFWIRHAI+RSMT S
Sbjct: 300  DFANASRFQDLCQAGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRSMTTS 352


>ref|XP_004234179.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial isoform X1 [Solanum
            lycopersicum]
          Length = 516

 Score =  457 bits (1177), Expect = e-154
 Identities = 239/353 (67%), Positives = 285/353 (80%), Gaps = 2/353 (0%)
 Frame = +2

Query: 344  MGVVTVSSSAARTPVGLNTRCSTRVSVLKRPVILSFKSDKSKNTALIAPRESVTLPVEVN 523
            MGVVTVSSSA+R+P+GL++R S R+  LKRPVI+SFK D +KNT L++P+ES++ P+E +
Sbjct: 1    MGVVTVSSSASRSPLGLSSRFSARLCPLKRPVIVSFKKDITKNTTLVSPKESISSPIETS 60

Query: 524  KENGKRLRKVKKRSERVSAVSTDEAPPSTLELDYSEAAAKLENIYKRSPATTVSDEDVXX 703
            KEN KR R+V KR+ERV AV T EAPPSTLELDYSEAAAKLE+IYKRS  T   + +V  
Sbjct: 61   KENEKRSRRVSKRTERVHAV-TIEAPPSTLELDYSEAAAKLESIYKRSLETASPNTEVKD 119

Query: 704  XXXXXXXXXXXXNGEV-EETEKKTAENFVRSQRK-GKRMGLEKRIALKMKKEGEFVASSE 877
                          E  EE +K+  +N V+++RK  KR+ L++RIAL   KEG+ +ASSE
Sbjct: 120  HLVKRRPRTRKRIVESDEEAKKEVVDNVVKNRRKKSKRLNLDQRIALLKNKEGKMLASSE 179

Query: 878  KKKQSKNDEDEKIDRLVRDYSSSTDLVSLDWKKMKIPPVLPSTEHSWLFKLMQPMKEILK 1057
            ++K +++ EDEKID+LVR+YS +TDL SLDWKKMKIPPVLPS+EH+WLFKLMQPMK IL+
Sbjct: 180  RRKLNEDTEDEKIDKLVREYSGATDLASLDWKKMKIPPVLPSSEHTWLFKLMQPMKAILQ 239

Query: 1058 VKENLQTDLGRDVTDDELAEATNMDVVHLRKQLEVGRAARNKLIKHNLRLVLFVMNKYFQ 1237
            VKENLQ DLGR+ TD E+AEATNMD   LRK+LE GRAARNKLIKHNLRLVLFVMNKYFQ
Sbjct: 240  VKENLQNDLGREPTDGEVAEATNMDASELRKKLEAGRAARNKLIKHNLRLVLFVMNKYFQ 299

Query: 1238 DFTNGPRFQDLCQAGVKGLITAIDRFEPKRKFRLSTYGLFWIRHAIVRSMTLS 1396
            DF N  RFQDLCQAGVKGLITAIDRFEP RKFRLSTYGLFWIRHAI+R MT S
Sbjct: 300  DFANASRFQDLCQAGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRYMTTS 352


>ref|XP_012852163.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Erythranthe guttata]
            gi|604306141|gb|EYU25198.1| hypothetical protein
            MIMGU_mgv1a004656mg [Erythranthe guttata]
          Length = 516

 Score =  454 bits (1167), Expect = e-153
 Identities = 252/358 (70%), Positives = 282/358 (78%), Gaps = 7/358 (1%)
 Frame = +2

Query: 344  MGVVTVSSSAARTPVGLNT--RCSTRVSVLKRPVILSFKSDKSKNT-ALIAPRESVTLPV 514
            MGVVTVSSSAARTPVGL+   R ST VS+ K+P++LS K+DK+K + ALIAP ESV LP 
Sbjct: 1    MGVVTVSSSAARTPVGLDAIIRYSTHVSLSKKPLVLSLKTDKAKKSRALIAPLESVALPS 60

Query: 515  EVNKENGKRLRKVKKR--SERVSAVS-TDEAPP-STLELDYSEAAAKLENIYKRSPATTV 682
            E   E  K LRKVKK    +RVSAVS TDEA P STL+LDY+EAAAKLE +YK SPA T 
Sbjct: 61   EAKNETVKSLRKVKKTRPDKRVSAVSITDEASPGSTLDLDYTEAAAKLEYLYKTSPALT- 119

Query: 683  SDEDVXXXXXXXXXXXXXXNGEVEETEKKTAENFVRSQRKGKRMGLEKRIALKMKKEGEF 862
             DE++                E  ET+     N VRSQR+GKR+ LEKR+AL+MKKE   
Sbjct: 120  -DEEIKTKSVQTRQPRRKRIDESVETK-----NLVRSQRRGKRLSLEKRVALRMKKESVP 173

Query: 863  VASSEKKKQSKNDEDEKIDRLVRDYSSSTDLVSLDWKKMKIPPVLPSTEHSWLFKLMQPM 1042
            + S +K+  +K+D+DEKIDRL+RDYS S+D  SLDWKK KIPPVLPS+EH WLFKLMQPM
Sbjct: 174  LLSQKKEVNNKSDDDEKIDRLLRDYSISSDFFSLDWKKTKIPPVLPSSEHVWLFKLMQPM 233

Query: 1043 KEILKVKENLQTDLGRDVTDDELAEATNMDVVHLRKQLEVGRAARNKLIKHNLRLVLFVM 1222
            KEILKVKE L  DLGR+V DDELAEATN DV  LRKQLEVGR ARNKLIKHNLRLVLFVM
Sbjct: 234  KEILKVKETLTNDLGREVRDDELAEATNTDVFQLRKQLEVGRTARNKLIKHNLRLVLFVM 293

Query: 1223 NKYFQDFTNGPRFQDLCQAGVKGLITAIDRFEPKRKFRLSTYGLFWIRHAIVRSMTLS 1396
            NKYFQDF NGPRFQDLCQAGVKGLITAIDRFEPKRKFRLSTYGLFWIRHAIVRSMT+S
Sbjct: 294  NKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRKFRLSTYGLFWIRHAIVRSMTIS 351


>ref|XP_007219009.1| hypothetical protein PRUPE_ppa004259mg [Prunus persica]
            gi|462415471|gb|EMJ20208.1| hypothetical protein
            PRUPE_ppa004259mg [Prunus persica]
          Length = 390

 Score =  439 bits (1128), Expect = e-149
 Identities = 221/355 (62%), Positives = 285/355 (80%), Gaps = 4/355 (1%)
 Frame = +2

Query: 344  MGVVTVSSSAARTPVGLNTRCSTRVSVLKRPVILSFKSDKSKNTALIAPRESVTLPVEVN 523
            MGVVTVSSSA+RTP+GL+T+ + + S L++P+I++FK+D++  TAL+AP+E + LP+E  
Sbjct: 1    MGVVTVSSSASRTPLGLSTKLTIQRSTLRKPLIVAFKTDEANKTALVAPQEKIPLPIETR 60

Query: 524  KENGKRLRKVKKRSERVSAVSTDEAPPSTLELDYSEAAAKLENIYKRSPATTVSD--EDV 697
            K++ KRL K +K ++ V + +TD A P TLE+DY+EAAAKLEN+YKRSP T  +   EDV
Sbjct: 61   KKHQKRLGKARKLAKSVKSATTDVASPCTLEVDYNEAAAKLENLYKRSPETEANSDVEDV 120

Query: 698  XXXXXXXXXXXXXXN-GEVEETEKKTAENFVRSQ-RKGKRMGLEKRIALKMKKEGEFVAS 871
                          +  + ++ E +T+   VR++ +K KR+ L KR+ALK  K+ + ++S
Sbjct: 121  DGLMRRGRKRRKKTSESDADKDENRTSNTVVRNRTKKAKRLSLNKRVALKWNKDEKVISS 180

Query: 872  SEKKKQSKNDEDEKIDRLVRDYSSSTDLVSLDWKKMKIPPVLPSTEHSWLFKLMQPMKEI 1051
              +K++S+ +E+EKI+ LVR+YS+STDLVSLDWKKMKIPPVL S+EH+WLFKLMQPMK +
Sbjct: 181  IVRKRKSRKNENEKIEELVREYSTSTDLVSLDWKKMKIPPVLTSSEHAWLFKLMQPMKGL 240

Query: 1052 LKVKENLQTDLGRDVTDDELAEATNMDVVHLRKQLEVGRAARNKLIKHNLRLVLFVMNKY 1231
            L+VKENLQ DLGR+ T+ ELAEATNM VV ++K LEVGRAAR+KLIKHNLRLVLFVMNKY
Sbjct: 241  LEVKENLQKDLGREPTNGELAEATNMSVVQVKKHLEVGRAARSKLIKHNLRLVLFVMNKY 300

Query: 1232 FQDFTNGPRFQDLCQAGVKGLITAIDRFEPKRKFRLSTYGLFWIRHAIVRSMTLS 1396
            FQDF NGP+FQDLCQAGVKGLITAIDRFEPKR FRLSTYGLFWIRHAI+RSMTLS
Sbjct: 301  FQDFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTLS 355


>ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Vitis vinifera]
            gi|302143685|emb|CBI22546.3| unnamed protein product
            [Vitis vinifera]
          Length = 518

 Score =  442 bits (1137), Expect = e-148
 Identities = 231/355 (65%), Positives = 281/355 (79%), Gaps = 4/355 (1%)
 Frame = +2

Query: 344  MGVVTVSSSAA--RTPVGLNTRCSTRVSVLKRPVILSFKSDKSKNTALIAPRESVTLPVE 517
            MGVVTVSSSA+  RTP GLN + S   + L+RP++L+FK+DK+KN AL+ P E + LP+E
Sbjct: 1    MGVVTVSSSASASRTPFGLNAKFSNHQTPLRRPLVLAFKADKAKNIALVTPHEPIPLPIE 60

Query: 518  VNKENGKRLRKVKKRSERVSAVSTDEAPPSTLELDYSEAAAKLENIYKRSPATTVSD-ED 694
             +K++ KRLR+  K S+RV AVSTDE  P ++ELDY+EAAAKLENIYK SPAT VS+ ED
Sbjct: 61   TSKDHKKRLRRASKPSKRVKAVSTDEVSPCSVELDYNEAAAKLENIYKLSPATDVSEAED 120

Query: 695  VXXXXXXXXXXXXXXNGEVEETEKKTAENFVR-SQRKGKRMGLEKRIALKMKKEGEFVAS 871
            +                  ++ EK+ ++N VR   +K KR+ LEKRIAL   K+ + VAS
Sbjct: 121  LERVVRRGRQRRKRVTLADDKAEKEVSDNVVRIHNKKPKRLSLEKRIALSKMKQEKAVAS 180

Query: 872  SEKKKQSKNDEDEKIDRLVRDYSSSTDLVSLDWKKMKIPPVLPSTEHSWLFKLMQPMKEI 1051
             +KK+ SKN EDE ID LVR+YS+STDLVSLDWKKMKIPPVLP +EH+WLFKLMQPMK +
Sbjct: 181  IQKKRDSKN-EDENIDVLVREYSASTDLVSLDWKKMKIPPVLPPSEHAWLFKLMQPMKGL 239

Query: 1052 LKVKENLQTDLGRDVTDDELAEATNMDVVHLRKQLEVGRAARNKLIKHNLRLVLFVMNKY 1231
            L+VK+NLQ DLGR+ TD ELAEA +M  V +R+ +EVG+AARNKLIKHNLRLVLFV+NKY
Sbjct: 240  LEVKDNLQKDLGREPTDGELAEAMSMSAVQVRRHMEVGQAARNKLIKHNLRLVLFVINKY 299

Query: 1232 FQDFTNGPRFQDLCQAGVKGLITAIDRFEPKRKFRLSTYGLFWIRHAIVRSMTLS 1396
            FQ+F NGP+FQDLCQAGVKGLITAIDRFEPKR FRLSTYGLFWIRHAI+RSMTLS
Sbjct: 300  FQEFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIMRSMTLS 354


>ref|XP_007219010.1| hypothetical protein PRUPE_ppa004259mg [Prunus persica]
            gi|462415472|gb|EMJ20209.1| hypothetical protein
            PRUPE_ppa004259mg [Prunus persica]
          Length = 519

 Score =  439 bits (1128), Expect = e-147
 Identities = 221/355 (62%), Positives = 285/355 (80%), Gaps = 4/355 (1%)
 Frame = +2

Query: 344  MGVVTVSSSAARTPVGLNTRCSTRVSVLKRPVILSFKSDKSKNTALIAPRESVTLPVEVN 523
            MGVVTVSSSA+RTP+GL+T+ + + S L++P+I++FK+D++  TAL+AP+E + LP+E  
Sbjct: 1    MGVVTVSSSASRTPLGLSTKLTIQRSTLRKPLIVAFKTDEANKTALVAPQEKIPLPIETR 60

Query: 524  KENGKRLRKVKKRSERVSAVSTDEAPPSTLELDYSEAAAKLENIYKRSPATTVSD--EDV 697
            K++ KRL K +K ++ V + +TD A P TLE+DY+EAAAKLEN+YKRSP T  +   EDV
Sbjct: 61   KKHQKRLGKARKLAKSVKSATTDVASPCTLEVDYNEAAAKLENLYKRSPETEANSDVEDV 120

Query: 698  XXXXXXXXXXXXXXN-GEVEETEKKTAENFVRSQ-RKGKRMGLEKRIALKMKKEGEFVAS 871
                          +  + ++ E +T+   VR++ +K KR+ L KR+ALK  K+ + ++S
Sbjct: 121  DGLMRRGRKRRKKTSESDADKDENRTSNTVVRNRTKKAKRLSLNKRVALKWNKDEKVISS 180

Query: 872  SEKKKQSKNDEDEKIDRLVRDYSSSTDLVSLDWKKMKIPPVLPSTEHSWLFKLMQPMKEI 1051
              +K++S+ +E+EKI+ LVR+YS+STDLVSLDWKKMKIPPVL S+EH+WLFKLMQPMK +
Sbjct: 181  IVRKRKSRKNENEKIEELVREYSTSTDLVSLDWKKMKIPPVLTSSEHAWLFKLMQPMKGL 240

Query: 1052 LKVKENLQTDLGRDVTDDELAEATNMDVVHLRKQLEVGRAARNKLIKHNLRLVLFVMNKY 1231
            L+VKENLQ DLGR+ T+ ELAEATNM VV ++K LEVGRAAR+KLIKHNLRLVLFVMNKY
Sbjct: 241  LEVKENLQKDLGREPTNGELAEATNMSVVQVKKHLEVGRAARSKLIKHNLRLVLFVMNKY 300

Query: 1232 FQDFTNGPRFQDLCQAGVKGLITAIDRFEPKRKFRLSTYGLFWIRHAIVRSMTLS 1396
            FQDF NGP+FQDLCQAGVKGLITAIDRFEPKR FRLSTYGLFWIRHAI+RSMTLS
Sbjct: 301  FQDFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTLS 355


>ref|XP_015878246.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Ziziphus jujuba]
          Length = 515

 Score =  438 bits (1126), Expect = e-147
 Identities = 230/353 (65%), Positives = 277/353 (78%), Gaps = 2/353 (0%)
 Frame = +2

Query: 344  MGVVTVSSSAARTPVGLNTRCSTRVSVLKRPVILSFKSDKSKNTALIAPRESVTLPVEVN 523
            MGVVTVSSSAA+TP+GL+ +  T  S+ K+P+I++FK+DK   TAL+AP E + LP+E  
Sbjct: 1    MGVVTVSSSAAQTPLGLSPKFPTYQSISKKPLIVAFKADKFNETALVAPHEQIPLPIEAR 60

Query: 524  KENGKRLRKVKKRSERVSAVSTDEAPPSTLELDYSEAAAKLENIYKRSPATTVSD-EDVX 700
            KE+ KRL KV K S+RV+A  TDEA   TLE+DY+EAAAKLENIYK SP T  SD EDV 
Sbjct: 61   KEHQKRLGKVNKPSKRVNAAITDEASTCTLEVDYNEAAAKLENIYKLSPMTDASDVEDVG 120

Query: 701  XXXXXXXXXXXXXNGEVEETEKKTAENFVRSQRK-GKRMGLEKRIALKMKKEGEFVASSE 877
                         + + EE EK+T+ +FVRS+RK  KR+ L+KR+ LK  K  E  A   
Sbjct: 121  GLKTRGRRRKKKISADDEE-EKRTSGSFVRSRRKKAKRLNLDKRVELKKNKVDEVNACVR 179

Query: 878  KKKQSKNDEDEKIDRLVRDYSSSTDLVSLDWKKMKIPPVLPSTEHSWLFKLMQPMKEILK 1057
            K+K+S ++ D  I+ LVR+YS+STDLVSLDWKKMKIPPVLPSTEH+WLFKLMQP+K +L+
Sbjct: 180  KRKESISENDN-IENLVREYSASTDLVSLDWKKMKIPPVLPSTEHAWLFKLMQPLKALLQ 238

Query: 1058 VKENLQTDLGRDVTDDELAEATNMDVVHLRKQLEVGRAARNKLIKHNLRLVLFVMNKYFQ 1237
            V ENL+  LGR  T+ ELAEATNM +  +++ LEVGRAARNKLIKHNLRLVLFV+NKYFQ
Sbjct: 239  VNENLKQSLGRKPTEGELAEATNMSIAQVKRHLEVGRAARNKLIKHNLRLVLFVINKYFQ 298

Query: 1238 DFTNGPRFQDLCQAGVKGLITAIDRFEPKRKFRLSTYGLFWIRHAIVRSMTLS 1396
            DF NGPRFQDLCQAGVKGLITAIDRFEPKR+FRLSTYGLFWIRHAI+RSMTLS
Sbjct: 299  DFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLS 351


>gb|KHG11410.1| RNA polymerase sigma factor rpoD [Gossypium arboreum]
          Length = 516

 Score =  436 bits (1120), Expect = e-146
 Identities = 231/353 (65%), Positives = 271/353 (76%), Gaps = 2/353 (0%)
 Frame = +2

Query: 344  MGVVTVSSSAARTPVGLNTRCSTRVSVLKRPVILSFKSDKSKNTALIAPRESVTLPVEVN 523
            MGVV+VSSSAARTPVGL T+ ST+    +RP I++FK+DKS NTAL+  R+   LPVE  
Sbjct: 1    MGVVSVSSSAARTPVGLGTKFSTQRCTFRRPCIMAFKADKSNNTALVTLRDHNLLPVETA 60

Query: 524  KENGKRLRKVKKRSERVSAVSTDEAPPSTLELDYSEAAAKLENIYKRSPATTVSDEDVXX 703
            KE+ KR  K KK S+ V+   TDE  P T+++DY+EAAAKLENIYK SP+T   DE    
Sbjct: 61   KEHPKRRGKAKKASKTVNRDFTDEGSPYTVDVDYNEAAAKLENIYKLSPSTQTFDEKGSE 120

Query: 704  XXXXXXXXXXXXNGEVE-ETEKKTAENFVRSQ-RKGKRMGLEKRIALKMKKEGEFVASSE 877
                        + E + + +    +  VRSQ +K +R+GL+KRI LK  +E + V S +
Sbjct: 121  GETKGRHLRRKRSTESDGKADNGDDKIVVRSQTKKNRRLGLDKRIELKKNREEKSVVSGQ 180

Query: 878  KKKQSKNDEDEKIDRLVRDYSSSTDLVSLDWKKMKIPPVLPSTEHSWLFKLMQPMKEILK 1057
             KK   N E EKIDRLVRDYS+STDLVSLDWKKMKIPPVLPSTEH+WLFKLMQPMK +L+
Sbjct: 181  SKKGISN-ESEKIDRLVRDYSASTDLVSLDWKKMKIPPVLPSTEHTWLFKLMQPMKALLE 239

Query: 1058 VKENLQTDLGRDVTDDELAEATNMDVVHLRKQLEVGRAARNKLIKHNLRLVLFVMNKYFQ 1237
             KENLQ DLGRD T+DELAEATN     +R+QLEVGRAARNKLIKHNLRLVLFV+NKYFQ
Sbjct: 240  AKENLQKDLGRDPTEDELAEATNSSAAQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFQ 299

Query: 1238 DFTNGPRFQDLCQAGVKGLITAIDRFEPKRKFRLSTYGLFWIRHAIVRSMTLS 1396
            DF NGPRFQDLCQAGVKGLITAIDRFEP+R+FRLSTYGLFWIRHAI+RSMTLS
Sbjct: 300  DFANGPRFQDLCQAGVKGLITAIDRFEPRRRFRLSTYGLFWIRHAIIRSMTLS 352


>gb|KJB52622.1| hypothetical protein B456_008G270500 [Gossypium raimondii]
          Length = 547

 Score =  435 bits (1118), Expect = e-145
 Identities = 231/360 (64%), Positives = 272/360 (75%), Gaps = 2/360 (0%)
 Frame = +2

Query: 323  FGSHGFGMGVVTVSSSAARTPVGLNTRCSTRVSVLKRPVILSFKSDKSKNTALIAPRESV 502
            F    F MGVV+VSSSAARTPVGL T+ ST+    +RP I++FK+DKS NTAL+  R+  
Sbjct: 25   FAKRQFEMGVVSVSSSAARTPVGLGTKFSTQRCTFRRPCIVAFKADKSNNTALVTLRDHN 84

Query: 503  TLPVEVNKENGKRLRKVKKRSERVSAVSTDEAPPSTLELDYSEAAAKLENIYKRSPATTV 682
             LPVE  KE+ KR  K KK S+ V+   TDE  P T+++DY+EAAAKLENIYK SP+T  
Sbjct: 85   LLPVETAKEHPKRRGKAKKASKTVNRDFTDEGSPYTVDVDYNEAAAKLENIYKLSPSTQT 144

Query: 683  SDEDVXXXXXXXXXXXXXXNGEVE-ETEKKTAENFVRSQ-RKGKRMGLEKRIALKMKKEG 856
             DE                + E + + +    +  VRSQ +K +R+GL+KRI LK  +E 
Sbjct: 145  FDEKGSEGETKGRQLRRKRSKESDGKADNGDDKIVVRSQTKKNRRLGLDKRIELKKNREE 204

Query: 857  EFVASSEKKKQSKNDEDEKIDRLVRDYSSSTDLVSLDWKKMKIPPVLPSTEHSWLFKLMQ 1036
            + V S + KK   N E EKIDRLVRDYS+STDLVSLDWKKMK+PPVLPSTEH+WLFKLMQ
Sbjct: 205  KSVVSGQSKKGISN-ESEKIDRLVRDYSASTDLVSLDWKKMKMPPVLPSTEHTWLFKLMQ 263

Query: 1037 PMKEILKVKENLQTDLGRDVTDDELAEATNMDVVHLRKQLEVGRAARNKLIKHNLRLVLF 1216
            PMK +L+ KENLQ DLGRD T+DELAEATN     +R+QLEVGRAARNKLIKHNLRLVLF
Sbjct: 264  PMKALLEAKENLQKDLGRDPTEDELAEATNSSAAQVRRQLEVGRAARNKLIKHNLRLVLF 323

Query: 1217 VMNKYFQDFTNGPRFQDLCQAGVKGLITAIDRFEPKRKFRLSTYGLFWIRHAIVRSMTLS 1396
            V+ KYFQDF NGPRFQDLCQAGVKGLITAIDRFEP+R+FRLSTYGLFWIRHAI+RSMTLS
Sbjct: 324  VIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPRRRFRLSTYGLFWIRHAIIRSMTLS 383


>ref|XP_012440029.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Gossypium raimondii]
            gi|823214552|ref|XP_012440030.1| PREDICTED: RNA
            polymerase sigma factor sigE, chloroplastic/mitochondrial
            [Gossypium raimondii] gi|763785552|gb|KJB52623.1|
            hypothetical protein B456_008G270500 [Gossypium
            raimondii] gi|763785553|gb|KJB52624.1| hypothetical
            protein B456_008G270500 [Gossypium raimondii]
          Length = 516

 Score =  432 bits (1110), Expect = e-144
 Identities = 229/353 (64%), Positives = 270/353 (76%), Gaps = 2/353 (0%)
 Frame = +2

Query: 344  MGVVTVSSSAARTPVGLNTRCSTRVSVLKRPVILSFKSDKSKNTALIAPRESVTLPVEVN 523
            MGVV+VSSSAARTPVGL T+ ST+    +RP I++FK+DKS NTAL+  R+   LPVE  
Sbjct: 1    MGVVSVSSSAARTPVGLGTKFSTQRCTFRRPCIVAFKADKSNNTALVTLRDHNLLPVETA 60

Query: 524  KENGKRLRKVKKRSERVSAVSTDEAPPSTLELDYSEAAAKLENIYKRSPATTVSDEDVXX 703
            KE+ KR  K KK S+ V+   TDE  P T+++DY+EAAAKLENIYK SP+T   DE    
Sbjct: 61   KEHPKRRGKAKKASKTVNRDFTDEGSPYTVDVDYNEAAAKLENIYKLSPSTQTFDEKGSE 120

Query: 704  XXXXXXXXXXXXNGEVE-ETEKKTAENFVRSQ-RKGKRMGLEKRIALKMKKEGEFVASSE 877
                        + E + + +    +  VRSQ +K +R+GL+KRI LK  +E + V S +
Sbjct: 121  GETKGRQLRRKRSKESDGKADNGDDKIVVRSQTKKNRRLGLDKRIELKKNREEKSVVSGQ 180

Query: 878  KKKQSKNDEDEKIDRLVRDYSSSTDLVSLDWKKMKIPPVLPSTEHSWLFKLMQPMKEILK 1057
             KK   N E EKIDRLVRDYS+STDLVSLDWKKMK+PPVLPSTEH+WLFKLMQPMK +L+
Sbjct: 181  SKKGISN-ESEKIDRLVRDYSASTDLVSLDWKKMKMPPVLPSTEHTWLFKLMQPMKALLE 239

Query: 1058 VKENLQTDLGRDVTDDELAEATNMDVVHLRKQLEVGRAARNKLIKHNLRLVLFVMNKYFQ 1237
             KENLQ DLGRD T+DELAEATN     +R+QLEVGRAARNKLIKHNLRLVLFV+ KYFQ
Sbjct: 240  AKENLQKDLGRDPTEDELAEATNSSAAQVRRQLEVGRAARNKLIKHNLRLVLFVIKKYFQ 299

Query: 1238 DFTNGPRFQDLCQAGVKGLITAIDRFEPKRKFRLSTYGLFWIRHAIVRSMTLS 1396
            DF NGPRFQDLCQAGVKGLITAIDRFEP+R+FRLSTYGLFWIRHAI+RSMTLS
Sbjct: 300  DFANGPRFQDLCQAGVKGLITAIDRFEPRRRFRLSTYGLFWIRHAIIRSMTLS 352


>ref|XP_007038959.1| Sigma factor E isoform 1 [Theobroma cacao]
            gi|590673674|ref|XP_007038960.1| Sigma factor E isoform 1
            [Theobroma cacao] gi|508776204|gb|EOY23460.1| Sigma
            factor E isoform 1 [Theobroma cacao]
            gi|508776205|gb|EOY23461.1| Sigma factor E isoform 1
            [Theobroma cacao]
          Length = 516

 Score =  431 bits (1107), Expect = e-144
 Identities = 228/353 (64%), Positives = 271/353 (76%), Gaps = 2/353 (0%)
 Frame = +2

Query: 344  MGVVTVSSSAARTPVGLNTRCSTRVSVLKRPVILSFKSDKSKNTALIAPRESVTLPVEVN 523
            MGVV+VSSSAARTP+GL+T+ ST+    +RP+ ++FK+DKS NTAL+ P+E + LP+E  
Sbjct: 1    MGVVSVSSSAARTPLGLSTKFSTQRCTSRRPLTVAFKADKSDNTALVTPQEHILLPIETA 60

Query: 524  KENGKRLRKVKKRSERVSAVSTDEAPPSTLELDYSEAAAKLENIYKRSPATTVSD-EDVX 700
            KE+ KR  K KK  + V+ V TD+  P TLE+DY+EAAAKLENIYK SPAT  SD E+V 
Sbjct: 61   KEHPKRRGKAKKDPKIVNHVFTDDGSPCTLEVDYNEAAAKLENIYKLSPATRSSDVEEVE 120

Query: 701  XXXXXXXXXXXXXNGEVEETEKKTAENFVRSQ-RKGKRMGLEKRIALKMKKEGEFVASSE 877
                             E+      +  VR+Q  + KR+ L+ RIALK  +E + V S  
Sbjct: 121  GKIKGRRQRRKRSKESDEKGVNSNDQIVVRNQTNRIKRLSLDNRIALKKNREEKPVVSVR 180

Query: 878  KKKQSKNDEDEKIDRLVRDYSSSTDLVSLDWKKMKIPPVLPSTEHSWLFKLMQPMKEILK 1057
            +KK S+N E EKIDRLVRDYS+STDLVSLDW+KMKIPPVLPS EH+WLFKLMQPMK +L+
Sbjct: 181  RKKSSEN-ESEKIDRLVRDYSASTDLVSLDWRKMKIPPVLPSIEHTWLFKLMQPMKALLQ 239

Query: 1058 VKENLQTDLGRDVTDDELAEATNMDVVHLRKQLEVGRAARNKLIKHNLRLVLFVMNKYFQ 1237
             KENLQ DLGRD T+DELAEATNM    +RK LEVG+AARNKLIKHNLRLVLF +NKYFQ
Sbjct: 240  AKENLQKDLGRDPTEDELAEATNMSAAQVRKHLEVGQAARNKLIKHNLRLVLFSINKYFQ 299

Query: 1238 DFTNGPRFQDLCQAGVKGLITAIDRFEPKRKFRLSTYGLFWIRHAIVRSMTLS 1396
            DF NGPRFQDLCQAGVKGLITAIDRFEP+R+FRLSTY LFWIRHAI+RSMTLS
Sbjct: 300  DFANGPRFQDLCQAGVKGLITAIDRFEPRRRFRLSTYSLFWIRHAIIRSMTLS 352


>gb|AKC88737.1| sigma factor [Francoa sonchifolia]
          Length = 513

 Score =  427 bits (1098), Expect = e-143
 Identities = 226/353 (64%), Positives = 273/353 (77%), Gaps = 2/353 (0%)
 Frame = +2

Query: 344  MGVVTVSSSAARTPVGLNTRCSTRVSVLKRPVILSFKSDKSKNTALIAPRESVTLPVEVN 523
            MGVVTVSSS AR+P+GL+T+ ST    LKRP I+S K+DK+ N AL+AP+E + LP++  
Sbjct: 1    MGVVTVSSSPARSPLGLSTKFSTHRCTLKRPSIVSLKADKTNNIALVAPQEQIPLPIQTP 60

Query: 524  KENGKRLRKVKKRSERVSAVSTDEAPPSTLELDYSEAAAKLENIYKRSPATTVSD-EDVX 700
            K+  KRL +  K S+RV AVSTD   P TLELD++EAAAKLENIYK SP T  SD ED+ 
Sbjct: 61   KKQRKRLGRAIKTSKRVKAVSTDVTSPCTLELDFNEAAAKLENIYKLSPPTDCSDTEDID 120

Query: 701  XXXXXXXXXXXXXNGEVEETEKKTAENFVRSQ-RKGKRMGLEKRIALKMKKEGEFVASSE 877
                         NG  +  EK+T++N VR++ +K KR+ L++RI+L   KEG+  +SS 
Sbjct: 121  GMKSRHRKRM---NGGDDTGEKRTSDNVVRNRTKKVKRLSLDRRISLIRNKEGDADSSSR 177

Query: 878  KKKQSKNDEDEKIDRLVRDYSSSTDLVSLDWKKMKIPPVLPSTEHSWLFKLMQPMKEILK 1057
             K   KN E+  +D LVR+YS+STDLVSLDWKKMKIPPVL S EH+WLFKLMQPMKE+L+
Sbjct: 178  SKIDQKN-ENYSVDWLVREYSASTDLVSLDWKKMKIPPVLSSLEHAWLFKLMQPMKELLQ 236

Query: 1058 VKENLQTDLGRDVTDDELAEATNMDVVHLRKQLEVGRAARNKLIKHNLRLVLFVMNKYFQ 1237
            +KENL  D  R+ TD ELAEA NM+V+ +RK ++VGRAARNKLIKHNLRLVLFVMNKYFQ
Sbjct: 237  LKENLHKDFSREPTDYELAEALNMNVIEMRKDMDVGRAARNKLIKHNLRLVLFVMNKYFQ 296

Query: 1238 DFTNGPRFQDLCQAGVKGLITAIDRFEPKRKFRLSTYGLFWIRHAIVRSMTLS 1396
            DF NGPRFQDLCQAGVKGLITAIDRFEPKR+ RLSTYGLFWIRHAI RS+TLS
Sbjct: 297  DFANGPRFQDLCQAGVKGLITAIDRFEPKRRVRLSTYGLFWIRHAITRSLTLS 349


>ref|XP_006376620.1| RNA polymerase sigma subunit SigE family protein [Populus
            trichocarpa] gi|550326141|gb|ERP54417.1| RNA polymerase
            sigma subunit SigE family protein [Populus trichocarpa]
          Length = 512

 Score =  426 bits (1094), Expect = e-142
 Identities = 229/353 (64%), Positives = 277/353 (78%), Gaps = 2/353 (0%)
 Frame = +2

Query: 344  MGVVTVSSSAARTPVGLNTRCSTRVSVLKRPVILSFKSDKSKNTALIAPRESVTLPVEVN 523
            MGVV+VSSSA+RTP+GL+T+ ST  S  KRP+I++FK++KS NT+L+AP E + LPVE  
Sbjct: 1    MGVVSVSSSASRTPLGLSTKFSTYGSTAKRPLIVAFKANKSNNTSLVAPHEQIPLPVETT 60

Query: 524  KENGKRLRKVKKRSERVSAVSTDEAPPSTLELDYSEAAAKLENIYKRSPATTVSD-EDVX 700
            K   KRL K KK S R+ AV T E  P TL +DY+EAAAKLENIYK SP T  SD ED  
Sbjct: 61   KGK-KRLGKSKKSSNRLKAVRT-EVSPCTLLVDYNEAAAKLENIYKLSPGTDTSDVEDAS 118

Query: 701  XXXXXXXXXXXXXNGEVEETEKKTAENFVRSQ-RKGKRMGLEKRIALKMKKEGEFVASSE 877
                         +   +ETE +T +  VR++ +K KR+ LEKRI+L++K E + V+S+ 
Sbjct: 119  GVIRRGRQRKRKISEGDKETEDRTGKIIVRNRAKKAKRLSLEKRISLRIKNEEKLVSSAG 178

Query: 878  KKKQSKNDEDEKIDRLVRDYSSSTDLVSLDWKKMKIPPVLPSTEHSWLFKLMQPMKEILK 1057
            K+K  KN E+EKID LVR+YS+STDLVSLDWKKMKIPPVL S+EH WLFKLMQPMK +L+
Sbjct: 179  KRKDRKN-ENEKIDDLVREYSASTDLVSLDWKKMKIPPVLTSSEHVWLFKLMQPMKALLQ 237

Query: 1058 VKENLQTDLGRDVTDDELAEATNMDVVHLRKQLEVGRAARNKLIKHNLRLVLFVMNKYFQ 1237
            VKE+LQ +LG + TD ELA+ATNMDV+ +RKQ+ VGRAARNKLIKHNLRLVLFV+ KYFQ
Sbjct: 238  VKEHLQENLGGEPTDVELAKATNMDVLQVRKQIAVGRAARNKLIKHNLRLVLFVIKKYFQ 297

Query: 1238 DFTNGPRFQDLCQAGVKGLITAIDRFEPKRKFRLSTYGLFWIRHAIVRSMTLS 1396
            DF NG +FQD CQAGVKGLITAIDRFEPKR+FRLSTYGLFWIRHAI+RSMTLS
Sbjct: 298  DFANGTKFQDFCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLS 350


>ref|XP_011001910.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Populus euphratica]
          Length = 512

 Score =  423 bits (1087), Expect = e-141
 Identities = 226/353 (64%), Positives = 275/353 (77%), Gaps = 2/353 (0%)
 Frame = +2

Query: 344  MGVVTVSSSAARTPVGLNTRCSTRVSVLKRPVILSFKSDKSKNTALIAPRESVTLPVEVN 523
            MGVV+VSSSA+RTP+GL+T+ ST  S  KRP+I++FK+DKS N + +AP E + LP+E  
Sbjct: 1    MGVVSVSSSASRTPLGLSTKFSTYGSTAKRPLIVAFKADKSSNPSFVAPHEQIPLPIETT 60

Query: 524  KENGKRLRKVKKRSERVSAVSTDEAPPSTLELDYSEAAAKLENIYKRSPATTVSD-EDVX 700
            K   KRL K KK S R+ AV T E  P TL +DY+EAAAKLENIYK SP T  SD ED  
Sbjct: 61   KGK-KRLGKSKKSSNRLKAVRT-EVSPCTLLVDYNEAAAKLENIYKLSPGTDTSDVEDAS 118

Query: 701  XXXXXXXXXXXXXNGEVEETEKKTAENFVRSQ-RKGKRMGLEKRIALKMKKEGEFVASSE 877
                         +   +E E +T++  VR++ +K KR+ LEKRI+L++K E + V S+ 
Sbjct: 119  GVIRRGRQRKRKISEGDKEAEDRTSKIIVRNRAKKAKRLSLEKRISLRIKNEEKLVTSAG 178

Query: 878  KKKQSKNDEDEKIDRLVRDYSSSTDLVSLDWKKMKIPPVLPSTEHSWLFKLMQPMKEILK 1057
            K+K  KN E+EKID L+R+YS+STDLVSLDWKKMKIPPVL S+EH WLFKLMQPMK +L+
Sbjct: 179  KRKDRKN-ENEKIDELLREYSASTDLVSLDWKKMKIPPVLTSSEHVWLFKLMQPMKALLQ 237

Query: 1058 VKENLQTDLGRDVTDDELAEATNMDVVHLRKQLEVGRAARNKLIKHNLRLVLFVMNKYFQ 1237
            VKE+LQ +LGR+ TD ELA+AT MDV+ +RKQ+ VGRAARNKLIKHNLRLVLFV+ KYFQ
Sbjct: 238  VKEHLQENLGREPTDVELAKATTMDVLQVRKQIAVGRAARNKLIKHNLRLVLFVIKKYFQ 297

Query: 1238 DFTNGPRFQDLCQAGVKGLITAIDRFEPKRKFRLSTYGLFWIRHAIVRSMTLS 1396
            DF NG +FQDLCQAGVKGLITAIDRFEPKR+FRLSTYGLFWIRHAI+RSMTLS
Sbjct: 298  DFANGTKFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLS 350