BLASTX nr result
ID: Rehmannia26_contig00034366
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia26_contig00034366
(631 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN74381.1| hypothetical protein VITISV_007944 [Vitis vinifera] 102 4e-52
emb|CAB40035.1| retrotransposon like protein [Arabidopsis thalia... 99 3e-38
gb|AAC35532.1| contains similarity to proteases [Arabidopsis tha... 99 3e-38
gb|AAF02855.1|AC009324_4 Similar to retrotransposon proteins [Ar... 91 3e-36
gb|AAC67200.1| putative retroelement pol polyprotein [Arabidopsi... 90 1e-35
gb|AAK51235.1|AF287471_1 polyprotein [Arabidopsis thaliana] 86 5e-34
emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana] 89 2e-33
gb|ACP30598.1| disease resistance protein [Brassica rapa subsp. ... 85 9e-30
gb|AAC61290.1| putative retroelement pol polyprotein [Arabidopsi... 84 6e-29
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|... 84 4e-26
gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group... 75 2e-25
gb|ABA97008.1| retrotransposon protein, putative, Ty1-copia subc... 75 5e-25
gb|ACY72569.1| unknown [Oryza sativa Japonica Group] 77 6e-25
gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz... 79 6e-25
dbj|BAG98101.1| unnamed protein product [Oryza sativa Japonica G... 79 8e-25
gb|EEE57553.1| hypothetical protein OsJ_07890 [Oryza sativa Japo... 79 8e-25
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p... 76 1e-24
gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group] 76 1e-24
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc... 76 1e-24
emb|CAN78447.1| hypothetical protein VITISV_026810 [Vitis vinifera] 70 2e-24
>emb|CAN74381.1| hypothetical protein VITISV_007944 [Vitis vinifera]
Length = 1884
Score = 102 bits (253), Expect(3) = 4e-52
Identities = 49/112 (43%), Positives = 70/112 (62%)
Frame = +3
Query: 117 MMQDRLQRIIARGHKRGQLYVLDDNFQEALSAIRKGSSSSTRWHQRLGHPNSKILSLLKE 296
+++D+LQ+++ARG K+G LY L++N +A++ R +SS WHQR+ HP +K + LL +
Sbjct: 378 VIKDQLQQVLARGTKKGGLYALEENVIQAMTVTRSSKASSEVWHQRMXHPQTKSIKLLXD 437
Query: 297 HNIINITSWVTRPSICASCQMGKSCKLPFQQSNKISKYPLEKIHSDLWGPAP 452
I ++GKSCKLPF NKIS PL+KIH DLWG AP
Sbjct: 438 KKFI---------------ELGKSCKLPFGLRNKISSNPLDKIHCDLWGXAP 474
Score = 95.1 bits (235), Expect(3) = 4e-52
Identities = 39/58 (67%), Positives = 51/58 (87%)
Frame = +1
Query: 457 SSNQGCRFYAIFVDDYSRFTWLYPLKRKSEFFDCFFKFQKLVENQFDRRIKIFQCDGG 630
+S QG ++Y +F+DD++R+TWLYPL+RKS+FF+CF KFQ LVENQ +RRIKIFQ DGG
Sbjct: 476 NSTQGYKYYXVFIDDHTRYTWLYPLRRKSDFFECFLKFQILVENQLERRIKIFQSDGG 533
Score = 55.5 bits (132), Expect(3) = 4e-52
Identities = 27/46 (58%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
Frame = +2
Query: 2 FDYSYQAIDFPQALAAMTINDVN-DKSFYVDSGATSHMTNDAGSSS 136
FDY YQ+ + PQALAAM +++ D +FYVDSGAT+H+TND SS
Sbjct: 329 FDYXYQSEEIPQALAAMALHEEEKDPNFYVDSGATAHITNDPEFSS 374
>emb|CAB40035.1| retrotransposon like protein [Arabidopsis thaliana]
gi|7267767|emb|CAB81170.1| retrotransposon like protein
[Arabidopsis thaliana]
Length = 1515
Score = 99.4 bits (246), Expect(2) = 3e-38
Identities = 49/108 (45%), Positives = 67/108 (62%)
Frame = +3
Query: 129 RLQRIIARGHKRGQLYVLDDNFQEALSAIRKGSSSSTRWHQRLGHPNSKILSLLKEHNII 308
R Q+++ +G+K LYVL D + + R+ SS WHQRLGHPN ++L L + I
Sbjct: 420 RTQQLLTQGNKHKGLYVLKDVPFQTYYSTRQQSSDDEVWHQRLGHPNKEVLQHLIKTKAI 479
Query: 309 NITSWVTRPSICASCQMGKSCKLPFQQSNKISKYPLEKIHSDLWGPAP 452
+ T ++C +CQMGK C+LPF S +S PLE+IH DLWGPAP
Sbjct: 480 VVNK--TSSNMCEACQMGKVCRLPFVASEFVSSRPLERIHCDLWGPAP 525
Score = 85.9 bits (211), Expect(2) = 3e-38
Identities = 36/59 (61%), Positives = 47/59 (79%)
Frame = +1
Query: 454 LSSNQGCRFYAIFVDDYSRFTWLYPLKRKSEFFDCFFKFQKLVENQFDRRIKIFQCDGG 630
++S QG ++Y IF+D+YSRFTW YPLK KS+FF F FQ+LVENQ+ +I +FQCDGG
Sbjct: 526 VTSAQGFQYYVIFIDNYSRFTWFYPLKLKSDFFSVFVLFQQLVENQYQHKIAMFQCDGG 584
>gb|AAC35532.1| contains similarity to proteases [Arabidopsis thaliana]
Length = 1392
Score = 99.4 bits (246), Expect(2) = 3e-38
Identities = 49/108 (45%), Positives = 67/108 (62%)
Frame = +3
Query: 129 RLQRIIARGHKRGQLYVLDDNFQEALSAIRKGSSSSTRWHQRLGHPNSKILSLLKEHNII 308
R Q+++ +G+K LYVL D + + R+ SS WHQRLGHPN ++L L + I
Sbjct: 423 RTQQLLTQGNKHKGLYVLKDVPFQTYYSTRQQSSDDEVWHQRLGHPNKEVLQHLIKTKAI 482
Query: 309 NITSWVTRPSICASCQMGKSCKLPFQQSNKISKYPLEKIHSDLWGPAP 452
+ T ++C +CQMGK C+LPF S +S PLE+IH DLWGPAP
Sbjct: 483 VVNK--TSSNMCEACQMGKVCRLPFVASEFVSSRPLERIHCDLWGPAP 528
Score = 85.9 bits (211), Expect(2) = 3e-38
Identities = 36/59 (61%), Positives = 47/59 (79%)
Frame = +1
Query: 454 LSSNQGCRFYAIFVDDYSRFTWLYPLKRKSEFFDCFFKFQKLVENQFDRRIKIFQCDGG 630
++S QG ++Y IF+D+YSRFTW YPLK KS+FF F FQ+LVENQ+ +I +FQCDGG
Sbjct: 529 VTSAQGFQYYVIFIDNYSRFTWFYPLKLKSDFFSVFVLFQQLVENQYQHKIAMFQCDGG 587
>gb|AAF02855.1|AC009324_4 Similar to retrotransposon proteins [Arabidopsis thaliana]
Length = 1522
Score = 90.5 bits (223), Expect(2) = 3e-36
Identities = 40/58 (68%), Positives = 45/58 (77%)
Frame = +1
Query: 457 SSNQGCRFYAIFVDDYSRFTWLYPLKRKSEFFDCFFKFQKLVENQFDRRIKIFQCDGG 630
SS QG R+Y +F+D YSRFTW YPLK KS+FF F FQKLVENQ +IKIFQCDGG
Sbjct: 530 SSVQGFRYYVVFIDHYSRFTWFYPLKLKSDFFSTFVMFQKLVENQLGHKIKIFQCDGG 587
Score = 87.8 bits (216), Expect(2) = 3e-36
Identities = 42/106 (39%), Positives = 66/106 (62%)
Frame = +3
Query: 135 QRIIARGHKRGQLYVLDDNFQEALSAIRKGSSSSTRWHQRLGHPNSKILSLLKEHNIINI 314
++++ G R LY L++ + L + R+ S+SS WH+RLGH N+++L L I I
Sbjct: 424 KKLLVMGRNRDGLYSLEEPKLQVLYSTRQNSASSEVWHRRLGHANAEVLHQLASSKSIII 483
Query: 315 TSWVTRPSICASCQMGKSCKLPFQQSNKISKYPLEKIHSDLWGPAP 452
+ V + ++C +C +GKS +LPF S + PLE+IH DLWGP+P
Sbjct: 484 INKVVK-TVCEACHLGKSTRLPFMLSTFNASRPLERIHCDLWGPSP 528
>gb|AAC67200.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1402
Score = 89.7 bits (221), Expect(2) = 1e-35
Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Frame = +3
Query: 135 QRIIARGHKRGQLYVLDDNFQ-EALSAIRKGSSSSTRWHQRLGHPNSKILSLLKEHNIIN 311
++++ G LY L D+ Q +A + R+ S+S WH+RLGHP+ ++L L + N I+
Sbjct: 430 KKLLIMGSTCDGLYCLKDDSQFKAFFSTRQQSASDEVWHRRLGHPHPQVLQQLVKTNSIS 489
Query: 312 ITSWVTRPSICASCQMGKSCKLPFQQSNKISKYPLEKIHSDLWGPAP 452
I T S+C +CQ+GKS +LPF S+ S PLE++H DLWGP+P
Sbjct: 490 INK--TSKSLCEACQLGKSTRLPFVSSSFTSNRPLERVHCDLWGPSP 534
Score = 86.7 bits (213), Expect(2) = 1e-35
Identities = 35/59 (59%), Positives = 48/59 (81%)
Frame = +1
Query: 454 LSSNQGCRFYAIFVDDYSRFTWLYPLKRKSEFFDCFFKFQKLVENQFDRRIKIFQCDGG 630
++S QG R+YA+F+D YSRF+W+YPLK KS+F++ F F KLVENQ + +I +FQCDGG
Sbjct: 535 ITSVQGFRYYAVFIDHYSRFSWIYPLKLKSDFYNIFVAFHKLVENQLNHKISVFQCDGG 593
>gb|AAK51235.1|AF287471_1 polyprotein [Arabidopsis thaliana]
Length = 1453
Score = 85.5 bits (210), Expect(2) = 5e-34
Identities = 46/110 (41%), Positives = 63/110 (57%)
Frame = +3
Query: 135 QRIIARGHKRGQLYVLDDNFQEALSAIRKGSSSSTRWHQRLGHPNSKILSLLKEHNIINI 314
Q+++++G + LYVL++ A + R+ ++S WH RLGH NS+IL LK I+
Sbjct: 423 QKVVSKGPRSNGLYVLENQEFVAFYSNRQCAASEEIWHHRLGHSNSRILQQLKSSKEISF 482
Query: 315 TSWVTRPSICASCQMGKSCKLPFQQSNKISKYPLEKIHSDLWGPAPFVFK 464
P +C CQMGKS KL F SN L +IH DLWGP+P V K
Sbjct: 483 NKSRMSP-VCEPCQMGKSSKLQFFSSNSRELDLLGRIHCDLWGPSPVVSK 531
Score = 85.5 bits (210), Expect(2) = 5e-34
Identities = 36/57 (63%), Positives = 45/57 (78%)
Frame = +1
Query: 460 SNQGCRFYAIFVDDYSRFTWLYPLKRKSEFFDCFFKFQKLVENQFDRRIKIFQCDGG 630
S QG ++Y +FVDDYSR++W YPLK KS+FF F FQ LVENQF+ +IK+FQ DGG
Sbjct: 530 SKQGFKYYVVFVDDYSRYSWFYPLKAKSDFFAVFVAFQNLVENQFNTKIKVFQSDGG 586
>emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana]
Length = 1466
Score = 89.0 bits (219), Expect(2) = 2e-33
Identities = 44/108 (40%), Positives = 67/108 (62%)
Frame = +3
Query: 135 QRIIARGHKRGQLYVLDDNFQEALSAIRKGSSSSTRWHQRLGHPNSKILSLLKEHNIINI 314
Q+++++G + LY+L+++ AL + R+ ++S WH RLGH NSKIL L I +
Sbjct: 422 QKVVSKGPRNNGLYMLENSEFVALYSNRQCAASMETWHHRLGHSNSKILQQLLTRKEIQV 481
Query: 315 TSWVTRPSICASCQMGKSCKLPFQQSNKISKYPLEKIHSDLWGPAPFV 458
T P +C CQMGKS +L F S+ + PL+++H DLWGP+P V
Sbjct: 482 NKSRTSP-VCEPCQMGKSTRLQFFSSDFRALKPLDRVHCDLWGPSPVV 528
Score = 80.1 bits (196), Expect(2) = 2e-33
Identities = 34/57 (59%), Positives = 44/57 (77%)
Frame = +1
Query: 460 SNQGCRFYAIFVDDYSRFTWLYPLKRKSEFFDCFFKFQKLVENQFDRRIKIFQCDGG 630
SNQG ++YA+FVDD+SRF+W +PL+ KS+F F +QKLVENQ +IK FQ DGG
Sbjct: 529 SNQGFKYYAVFVDDFSRFSWFFPLRMKSKFISVFIAYQKLVENQLGTKIKEFQSDGG 585
>gb|ACP30598.1| disease resistance protein [Brassica rapa subsp. pekinensis]
Length = 2301
Score = 84.7 bits (208), Expect(2) = 9e-30
Identities = 42/108 (38%), Positives = 61/108 (56%)
Frame = +3
Query: 135 QRIIARGHKRGQLYVLDDNFQEALSAIRKGSSSSTRWHQRLGHPNSKILSLLKEHNIINI 314
++++ +G LY + + A + R+ ++S WHQRLGHPN IL L + I
Sbjct: 429 KKVLLQGRNTKGLYSIKEPAFHAFFSTRQVAASDEVWHQRLGHPNPHILQRLASIKSVFI 488
Query: 315 TSWVTRPSICASCQMGKSCKLPFQQSNKISKYPLEKIHSDLWGPAPFV 458
S+C SCQM KS +LPF S ++ PLE+IH D+WGP+P V
Sbjct: 489 NK--RSKSLCVSCQMAKSSRLPFSASQFVATRPLERIHCDVWGPSPVV 534
Score = 72.0 bits (175), Expect(2) = 9e-30
Identities = 29/57 (50%), Positives = 40/57 (70%)
Frame = +1
Query: 460 SNQGCRFYAIFVDDYSRFTWLYPLKRKSEFFDCFFKFQKLVENQFDRRIKIFQCDGG 630
S Q ++Y + +D+YSR+ W+YP+K+KS+F F FQ LV+NQF I FQCDGG
Sbjct: 535 SVQEFKYYVVLIDNYSRYCWMYPMKKKSDFHSIFIAFQSLVQNQFHTTIGTFQCDGG 591
>gb|AAC61290.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1149
Score = 83.6 bits (205), Expect(2) = 6e-29
Identities = 40/106 (37%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Frame = +3
Query: 138 RIIARGHKRGQ-LYVLDDNFQEALSAIRKGSSSSTRWHQRLGHPNSKILSLLKEHNIINI 314
+++ +G + LY L++ + + R+ ++ WH RLGHPN ++L LL I I
Sbjct: 413 KVLTKGSSTSEGLYKLENPKFQMFYSTRQVKATDEVWHMRLGHPNPQVLQLLANKKAIQI 472
Query: 315 TSWVTRPSICASCQMGKSCKLPFQQSNKISKYPLEKIHSDLWGPAP 452
++ +C SC++GKS +LPF S+ I+ PLE++H DLWGPAP
Sbjct: 473 NKSTSK--MCESCRLGKSSRLPFIASDFIASRPLERVHCDLWGPAP 516
Score = 70.5 bits (171), Expect(2) = 6e-29
Identities = 32/59 (54%), Positives = 39/59 (66%)
Frame = +1
Query: 454 LSSNQGCRFYAIFVDDYSRFTWLYPLKRKSEFFDCFFKFQKLVENQFDRRIKIFQCDGG 630
+SS QG ++Y IF+D+ SRF W YPLK KS+F F KFQ VEN +I FQ DGG
Sbjct: 517 VSSIQGFQYYVIFIDNRSRFCWFYPLKHKSDFCSLFMKFQSFVENLLQTKIGTFQSDGG 575
>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1447
Score = 84.0 bits (206), Expect(2) = 4e-26
Identities = 44/113 (38%), Positives = 67/113 (59%), Gaps = 8/113 (7%)
Frame = +3
Query: 135 QRIIARGHKRGQLYVLDDN--------FQEALSAIRKGSSSSTRWHQRLGHPNSKILSLL 290
++++ RG RG+LY L + +EA AI+ S RWH RLGHP S I+ +
Sbjct: 417 KKLLFRGPCRGRLYALPSSSPHERPRPLKEAFGAIKP---SFERWHSRLGHPASPIVEKV 473
Query: 291 KEHNIINITSWVTRPSICASCQMGKSCKLPFQQSNKISKYPLEKIHSDLWGPA 449
N + + + S+C +CQ GKS +LP+ +S+ +S +PLE I+SD+WGPA
Sbjct: 474 ISKNNLPCLAESNKQSVCDACQQGKSHQLPYSRSSSMSSHPLELIYSDVWGPA 526
Score = 60.5 bits (145), Expect(2) = 4e-26
Identities = 29/59 (49%), Positives = 38/59 (64%)
Frame = +1
Query: 454 LSSNQGCRFYAIFVDDYSRFTWLYPLKRKSEFFDCFFKFQKLVENQFDRRIKIFQCDGG 630
L+S G ++Y F+ DYS+FTWLY +K KSE F +FQ LVE F+R+I Q D G
Sbjct: 527 LTSVGGKQYYVSFIGDYSKFTWLYLIKHKSEVIQKFHEFQALVERLFNRKIIAMQSDWG 585
>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1431
Score = 74.7 bits (182), Expect(2) = 2e-25
Identities = 43/108 (39%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Frame = +3
Query: 135 QRIIARGHKRGQLYVLDDNFQEALSAIRKG---SSSSTRWHQRLGHPNSKILSLLKEHNI 305
+R I G R LY L A S++R+ + S RWH RLGHP+ I+ + N
Sbjct: 411 RRTILEGPCRRGLYPLP-----ARSSLRQAFVATPSFVRWHGRLGHPSKPIVLRILSQNK 465
Query: 306 INITSWVTRPSICASCQMGKSCKLPFQQSNKISKYPLEKIHSDLWGPA 449
+ S S+C +CQ K +LPF +S +S PLE IHSD+WGPA
Sbjct: 466 LPCLSNSVNESVCDACQQAKCHQLPFPRSTSVSNNPLELIHSDVWGPA 513
Score = 67.8 bits (164), Expect(2) = 2e-25
Identities = 30/52 (57%), Positives = 37/52 (71%)
Frame = +1
Query: 475 RFYAIFVDDYSRFTWLYPLKRKSEFFDCFFKFQKLVENQFDRRIKIFQCDGG 630
++Y F+DDYS+F W+Y LK KSE F F +FQKLVE QFDR+I Q D G
Sbjct: 521 KYYVSFIDDYSKFVWIYFLKHKSEVFQKFHEFQKLVERQFDRKILSMQTDWG 572
>gb|ABA97008.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1202
Score = 74.7 bits (182), Expect(2) = 5e-25
Identities = 43/108 (39%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Frame = +3
Query: 135 QRIIARGHKRGQLYVLDDNFQEALSAIRKG---SSSSTRWHQRLGHPNSKILSLLKEHNI 305
+R I G R LY L A S++R+ + S RWH RLGHP+ I+ + N
Sbjct: 420 RRTILEGPCRRGLYPLP-----ARSSLRQAFVATPSFVRWHGRLGHPSKPIVLRILSQNK 474
Query: 306 INITSWVTRPSICASCQMGKSCKLPFQQSNKISKYPLEKIHSDLWGPA 449
+ S S+C +CQ K +LPF +S +S PLE IHSD+WGPA
Sbjct: 475 LPCLSNSVNESVCDACQQAKCHQLPFPRSTSVSNNPLELIHSDVWGPA 522
Score = 66.2 bits (160), Expect(2) = 5e-25
Identities = 30/52 (57%), Positives = 37/52 (71%)
Frame = +1
Query: 475 RFYAIFVDDYSRFTWLYPLKRKSEFFDCFFKFQKLVENQFDRRIKIFQCDGG 630
++Y F+DDYS+F W+Y LK KSE F F +FQKLVE QFDR+I Q D G
Sbjct: 530 KYYVSFIDDYSKFVWIYFLKHKSEVFQKFHEFQKLVEWQFDRKILSMQTDWG 581
>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
Length = 1436
Score = 77.0 bits (188), Expect(2) = 6e-25
Identities = 39/106 (36%), Positives = 60/106 (56%), Gaps = 2/106 (1%)
Frame = +3
Query: 141 IIARGHKRGQLYVLDDNFQEALSAIRKGSS--SSTRWHQRLGHPNSKILSLLKEHNIINI 314
I+ G R LY + +F S G++ S +RWH RLGHP+ I+ + N +
Sbjct: 422 ILLEGRCRHGLYPIPKSFGRTTSKQALGTTKLSLSRWHSRLGHPSLPIVKQVISKNNLPC 481
Query: 315 TSWVTRPSICASCQMGKSCKLPFQQSNKISKYPLEKIHSDLWGPAP 452
+ S+C +CQ KS +LP+ +S +S++PLE + SD+WGPAP
Sbjct: 482 SVESVNQSVCNACQEAKSRQLPYVRSTSVSQFPLELVFSDVWGPAP 527
Score = 63.5 bits (153), Expect(2) = 6e-25
Identities = 28/52 (53%), Positives = 37/52 (71%)
Frame = +1
Query: 475 RFYAIFVDDYSRFTWLYPLKRKSEFFDCFFKFQKLVENQFDRRIKIFQCDGG 630
++Y F+DD+S+FTW+Y LK KSE F+ F +FQ LVE FDR+I Q D G
Sbjct: 534 KYYVSFIDDFSKFTWIYLLKYKSEVFEKFKEFQALVERMFDRKIIAMQTDWG 585
>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
Group]
Length = 1399
Score = 79.3 bits (194), Expect(2) = 6e-25
Identities = 44/113 (38%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
Frame = +3
Query: 117 MMQDRLQR-IIARGHKRGQLYVLDDNFQEALSAIRKGSSSSTRWHQRLGHPNSKILSLLK 293
+++DR R I +G R +LY L + + + A S S RWH RLGHP I++ +
Sbjct: 379 LIKDRATRNTILKGRCRRRLYSLPTSPAKQVHAATTPSFS--RWHSRLGHPAVPIVTRVL 436
Query: 294 EHNIINITSWVTRPSICASCQMGKSCKLPFQQSNKISKYPLEKIHSDLWGPAP 452
N + ++ + SIC +CQ GKS +LP+ +S+ +S PLE I S++WGPAP
Sbjct: 437 SKNNLPCSTVANKDSICDACQKGKSHQLPYPKSSSVSSQPLELIFSNVWGPAP 489
Score = 61.2 bits (147), Expect(2) = 6e-25
Identities = 29/54 (53%), Positives = 35/54 (64%)
Frame = +1
Query: 469 GCRFYAIFVDDYSRFTWLYPLKRKSEFFDCFFKFQKLVENQFDRRIKIFQCDGG 630
G +FY F+DDYS+FTW+Y LK KSE F F +FQ LVE F +I Q D G
Sbjct: 494 GKKFYVSFIDDYSKFTWVYLLKHKSEVFQKFQEFQTLVERFFGHKILAVQTDWG 547
>dbj|BAG98101.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 572
Score = 79.0 bits (193), Expect(2) = 8e-25
Identities = 36/74 (48%), Positives = 49/74 (66%)
Frame = +3
Query: 231 SSTRWHQRLGHPNSKILSLLKEHNIINITSWVTRPSICASCQMGKSCKLPFQQSNKISKY 410
S ++WH RLGHP+S I+ + HN + S + S+C +CQ GKS +LP+ +S S
Sbjct: 396 SPSQWHCRLGHPSSVIVQQVLSHNNLPCVSESNKHSVCDACQKGKSHQLPYSKSLSRSSA 455
Query: 411 PLEKIHSDLWGPAP 452
PLE IHSD+WGPAP
Sbjct: 456 PLELIHSDVWGPAP 469
Score = 61.2 bits (147), Expect(2) = 8e-25
Identities = 26/49 (53%), Positives = 33/49 (67%)
Frame = +1
Query: 478 FYAIFVDDYSRFTWLYPLKRKSEFFDCFFKFQKLVENQFDRRIKIFQCD 624
+Y FVDD+S+F+W+Y LK KS+ F CF FQ VE FDR+I Q D
Sbjct: 477 YYVSFVDDFSKFSWIYLLKHKSDVFQCFHNFQNPVERLFDRKILAMQTD 525
>gb|EEE57553.1| hypothetical protein OsJ_07890 [Oryza sativa Japonica Group]
Length = 499
Score = 79.0 bits (193), Expect(2) = 8e-25
Identities = 36/74 (48%), Positives = 49/74 (66%)
Frame = +3
Query: 231 SSTRWHQRLGHPNSKILSLLKEHNIINITSWVTRPSICASCQMGKSCKLPFQQSNKISKY 410
S ++WH RLGHP+S I+ + HN + S + S+C +CQ GKS +LP+ +S S
Sbjct: 323 SPSQWHCRLGHPSSVIVQQVLSHNNLPCVSESNKHSVCDACQKGKSHQLPYSKSLSRSSA 382
Query: 411 PLEKIHSDLWGPAP 452
PLE IHSD+WGPAP
Sbjct: 383 PLELIHSDVWGPAP 396
Score = 61.2 bits (147), Expect(2) = 8e-25
Identities = 26/49 (53%), Positives = 33/49 (67%)
Frame = +1
Query: 478 FYAIFVDDYSRFTWLYPLKRKSEFFDCFFKFQKLVENQFDRRIKIFQCD 624
+Y FVDD+S+F+W+Y LK KS+ F CF FQ VE FDR+I Q D
Sbjct: 404 YYVSFVDDFSKFSWIYLLKHKSDVFQCFHNFQNPVERLFDRKILAMQTD 452
>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
sativa Japonica Group]
Length = 1448
Score = 76.3 bits (186), Expect(2) = 1e-24
Identities = 39/114 (34%), Positives = 67/114 (58%), Gaps = 3/114 (2%)
Frame = +3
Query: 120 MQDRLQR-IIARGHKRGQLYVLDDNFQEALSAIRKGSS--SSTRWHQRLGHPNSKILSLL 290
++D++ R ++ G R LY + +F + + G++ S +RWH RLGHP+ I+ +
Sbjct: 417 IKDQVTRDVLLEGKCRHGLYPIPKSFGRSTNKQALGAAKLSLSRWHSRLGHPSLPIVKQV 476
Query: 291 KEHNIINITSWVTRPSICASCQMGKSCKLPFQQSNKISKYPLEKIHSDLWGPAP 452
N + + S+C +CQ KS +LP+ +S +S++PLE + SD+WGPAP
Sbjct: 477 ISRNNLPCSVESVNQSVCNACQEAKSHQLPYIRSTSVSQFPLELVFSDVWGPAP 530
Score = 63.5 bits (153), Expect(2) = 1e-24
Identities = 28/52 (53%), Positives = 37/52 (71%)
Frame = +1
Query: 475 RFYAIFVDDYSRFTWLYPLKRKSEFFDCFFKFQKLVENQFDRRIKIFQCDGG 630
++Y F+DD+S+FTW+Y LK KSE F+ F +FQ LVE FDR+I Q D G
Sbjct: 537 KYYVSFIDDFSKFTWIYLLKYKSEVFEKFKEFQALVERMFDRKIIAMQTDWG 588
>gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]
Length = 1448
Score = 76.3 bits (186), Expect(2) = 1e-24
Identities = 39/114 (34%), Positives = 67/114 (58%), Gaps = 3/114 (2%)
Frame = +3
Query: 120 MQDRLQR-IIARGHKRGQLYVLDDNFQEALSAIRKGSS--SSTRWHQRLGHPNSKILSLL 290
++D++ R ++ G R LY + +F + + G++ S +RWH RLGHP+ I+ +
Sbjct: 417 IKDQVTRDVLLEGKCRHGLYPIPKSFGRSTNKQALGAAKLSLSRWHSRLGHPSLPIVKQV 476
Query: 291 KEHNIINITSWVTRPSICASCQMGKSCKLPFQQSNKISKYPLEKIHSDLWGPAP 452
N + + S+C +CQ KS +LP+ +S +S++PLE + SD+WGPAP
Sbjct: 477 ISRNNLPCSVESVNQSVCNACQEAKSHQLPYIRSTSVSQFPLELVFSDVWGPAP 530
Score = 63.5 bits (153), Expect(2) = 1e-24
Identities = 28/52 (53%), Positives = 37/52 (71%)
Frame = +1
Query: 475 RFYAIFVDDYSRFTWLYPLKRKSEFFDCFFKFQKLVENQFDRRIKIFQCDGG 630
++Y F+DD+S+FTW+Y LK KSE F+ F +FQ LVE FDR+I Q D G
Sbjct: 537 KYYVSFIDDFSKFTWIYLLKYKSEVFEKFKEFQALVERMFDRKIIAMQTDWG 588
>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1460
Score = 75.9 bits (185), Expect(2) = 1e-24
Identities = 47/121 (38%), Positives = 74/121 (61%), Gaps = 3/121 (2%)
Frame = +3
Query: 99 LHRI*QMMQDRLQR-IIARGHKRGQLYVLD-DNFQEALSAIRKGSSSSTRWHQRLGHPNS 272
LHR ++D++ R + +G +LY L + ++A SAI+ S RWH RLGHP+
Sbjct: 406 LHRDYFFLKDQITRKTLLKGRSWRRLYPLPHSSLKQAYSAIKL---SLDRWHHRLGHPS- 461
Query: 273 KILSLLKEHNIINIT-SWVTRPSICASCQMGKSCKLPFQQSNKISKYPLEKIHSDLWGPA 449
I ++ + N ++ S ++ S+C +CQ KS +LPF S+ +SK+PLE + SD+WGPA
Sbjct: 462 -ITTVKQVVNKFSLPCSDLSSESVCNACQQAKSHQLPFPISSSVSKHPLELVFSDVWGPA 520
Query: 450 P 452
P
Sbjct: 521 P 521
Score = 63.5 bits (153), Expect(2) = 1e-24
Identities = 26/52 (50%), Positives = 38/52 (73%)
Frame = +1
Query: 475 RFYAIFVDDYSRFTWLYPLKRKSEFFDCFFKFQKLVENQFDRRIKIFQCDGG 630
++Y F+DD+S+FTW+Y ++ KS+ FD F +FQ +VE QFDR+I Q D G
Sbjct: 528 KYYVSFIDDFSKFTWIYLIQHKSQVFDKFQEFQVMVERQFDRKILAMQTDWG 579
>emb|CAN78447.1| hypothetical protein VITISV_026810 [Vitis vinifera]
Length = 1171
Score = 70.1 bits (170), Expect(2) = 2e-24
Identities = 37/106 (34%), Positives = 61/106 (57%), Gaps = 5/106 (4%)
Frame = +3
Query: 138 RIIARGHKRGQLYVLDD--NFQEALSAIRKG---SSSSTRWHQRLGHPNSKILSLLKEHN 302
RI+ +G LY L F ++L+ + +++ WH RLGHP+S I + L N
Sbjct: 420 RILLQGVVENGLYPLAGCKTFHKSLTCLSTTIGVRANADTWHSRLGHPSSVIFNSLFHSN 479
Query: 303 IINITSWVTRPSICASCQMGKSCKLPFQQSNKISKYPLEKIHSDLW 440
+++ T+ C++CQ+GK+ +LPF +S++ S PL IHSD+W
Sbjct: 480 KLSVKGSSTKLEFCSACQLGKAKQLPFPESSRQSSVPLALIHSDVW 525
Score = 68.9 bits (167), Expect(2) = 2e-24
Identities = 29/59 (49%), Positives = 38/59 (64%)
Frame = +1
Query: 454 LSSNQGCRFYAIFVDDYSRFTWLYPLKRKSEFFDCFFKFQKLVENQFDRRIKIFQCDGG 630
+ S GC +Y +F+DDYSR++WLYPL RKS+ F F KF+ + E F IK Q D G
Sbjct: 529 VQSTGGCSYYVLFIDDYSRYSWLYPLHRKSDVFATFVKFKTIAEKLFSTSIKQIQTDNG 587