BLASTX nr result
ID: Rehmannia26_contig00034353
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia26_contig00034353
(758 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI24961.3| unnamed protein product [Vitis vinifera] 125 2e-26
ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-... 125 2e-26
ref|XP_006345495.1| PREDICTED: RNA polymerase sigma factor sigD,... 122 1e-25
ref|XP_004231123.1| PREDICTED: RNA polymerase sigma factor sigD,... 117 5e-24
ref|XP_006379084.1| hypothetical protein POPTR_0009s06210g [Popu... 116 7e-24
ref|XP_006379083.1| hypothetical protein POPTR_0009s06210g [Popu... 116 7e-24
ref|XP_006379082.1| hypothetical protein POPTR_0009s06210g [Popu... 116 7e-24
ref|XP_006379081.1| hypothetical protein POPTR_0009s06210g [Popu... 116 7e-24
ref|XP_006379080.1| hypothetical protein POPTR_0009s06210g [Popu... 116 7e-24
ref|XP_004308689.1| PREDICTED: RNA polymerase sigma factor sigD,... 114 4e-23
ref|XP_006482924.1| PREDICTED: RNA polymerase sigma factor sigD,... 112 1e-22
ref|XP_006438958.1| hypothetical protein CICLE_v10033747mg [Citr... 112 1e-22
gb|EXB95293.1| RNA polymerase sigma factor rpoD [Morus notabilis] 112 1e-22
gb|EMJ20400.1| hypothetical protein PRUPE_ppa017025mg [Prunus pe... 112 1e-22
ref|XP_006399871.1| hypothetical protein EUTSA_v10013654mg [Eutr... 108 1e-21
dbj|BAJ34231.1| unnamed protein product [Thellungiella halophila] 108 1e-21
ref|XP_006851106.1| hypothetical protein AMTR_s00025p00248060 [A... 107 4e-21
ref|XP_002517769.1| RNA polymerase sigma factor rpoD, putative [... 106 7e-21
ref|NP_196877.1| sigma factor 4 [Arabidopsis thaliana] gi|752165... 103 6e-20
dbj|BAA78111.1| RNA polymerase sigma subunit SigD* [Arabidopsis ... 103 6e-20
>emb|CBI24961.3| unnamed protein product [Vitis vinifera]
Length = 319
Score = 125 bits (313), Expect = 2e-26
Identities = 65/114 (57%), Positives = 83/114 (72%), Gaps = 3/114 (2%)
Frame = +2
Query: 425 AGKSRFMTPKEEATFSWYLKERARIEGVR---TEMGGQELSSSQWAKAAGISQHKLDKIL 595
A +S +TP+EEA F LKE A +E R E E +S+QWA+A GI + LDK+L
Sbjct: 17 AARSAVLTPREEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGIKRSSLDKML 76
Query: 596 CNGRESEEKITSSYQRLVVSVASSYQGRGLNLQDLTQEGSIGLLRGAIKFNLER 757
CNGRES E+I SY+RLVVS+A+ YQG+GL+LQDL QEGSIGLLRGA +F+ +R
Sbjct: 77 CNGRESRERINQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPDR 130
>ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
Length = 426
Score = 125 bits (313), Expect = 2e-26
Identities = 65/114 (57%), Positives = 83/114 (72%), Gaps = 3/114 (2%)
Frame = +2
Query: 425 AGKSRFMTPKEEATFSWYLKERARIEGVR---TEMGGQELSSSQWAKAAGISQHKLDKIL 595
A +S +TP+EEA F LKE A +E R E E +S+QWA+A GI + LDK+L
Sbjct: 124 AARSAVLTPREEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGIKRSSLDKML 183
Query: 596 CNGRESEEKITSSYQRLVVSVASSYQGRGLNLQDLTQEGSIGLLRGAIKFNLER 757
CNGRES E+I SY+RLVVS+A+ YQG+GL+LQDL QEGSIGLLRGA +F+ +R
Sbjct: 184 CNGRESRERINQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPDR 237
>ref|XP_006345495.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
[Solanum tuberosum]
Length = 421
Score = 122 bits (307), Expect = 1e-25
Identities = 69/129 (53%), Positives = 89/129 (68%), Gaps = 3/129 (2%)
Frame = +2
Query: 371 ECVKTDLEDEKFVFVDKKAGKSRFMTPKEEATFSWYLKERARIEGVRT---EMGGQELSS 541
EC++ + D + K ++T +EEA +SWYLKE ARIE +R E +LSS
Sbjct: 102 ECLEMEKGDR--ILNSKPLKTGFYLTHEEEAKYSWYLKEEARIEILRKMVEETSEIDLSS 159
Query: 542 SQWAKAAGISQHKLDKILCNGRESEEKITSSYQRLVVSVASSYQGRGLNLQDLTQEGSIG 721
Q AKAAG+S +LDK+L N +ES++KI Y+ LVVSVA+SYQG+GL+LQDL QEGSIG
Sbjct: 160 KQLAKAAGMSTQRLDKLLINAKESQKKIIQCYRGLVVSVAASYQGKGLSLQDLIQEGSIG 219
Query: 722 LLRGAIKFN 748
LL GA KFN
Sbjct: 220 LLHGAKKFN 228
>ref|XP_004231123.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
[Solanum lycopersicum]
Length = 442
Score = 117 bits (292), Expect = 5e-24
Identities = 73/150 (48%), Positives = 91/150 (60%), Gaps = 24/150 (16%)
Frame = +2
Query: 371 ECVKTDLEDEKFVFVDKKAGKSRFMTPKEEATFSWYLK---------------------E 487
EC++ + ED F K G ++T KEEA +SWYLK E
Sbjct: 102 ECLEMEKEDNIFNLKPLKTGF--YLTHKEEAKYSWYLKVNNNVYHRELDAGAESGWVKRE 159
Query: 488 RARIEGVRT---EMGGQELSSSQWAKAAGISQHKLDKILCNGRESEEKITSSYQRLVVSV 658
ARIE +R E +LSS Q AKAAG+S +LDK+L N +ES++KI Y+ LVVSV
Sbjct: 160 EARIEILRKMVEETSEIDLSSKQLAKAAGMSTRRLDKLLINAKESQKKIIQCYRGLVVSV 219
Query: 659 ASSYQGRGLNLQDLTQEGSIGLLRGAIKFN 748
A+SYQG+GL+LQDL QEGSIGLL GA KFN
Sbjct: 220 AASYQGKGLSLQDLIQEGSIGLLHGAKKFN 249
>ref|XP_006379084.1| hypothetical protein POPTR_0009s06210g [Populus trichocarpa]
gi|550331146|gb|ERP56881.1| hypothetical protein
POPTR_0009s06210g [Populus trichocarpa]
Length = 423
Score = 116 bits (291), Expect = 7e-24
Identities = 64/112 (57%), Positives = 82/112 (73%), Gaps = 3/112 (2%)
Frame = +2
Query: 431 KSRFMTPKEEATFSWYLKERARIEGVRTEMGG-QEL--SSSQWAKAAGISQHKLDKILCN 601
K +++PKEEA FS LK ARIE R +G QEL +S Q AKA + ++ +D +LC
Sbjct: 122 KRGYLSPKEEAEFSMCLKHEARIEAARRRIGEVQELDPTSKQLAKALRMEKNSVDNVLCK 181
Query: 602 GRESEEKITSSYQRLVVSVASSYQGRGLNLQDLTQEGSIGLLRGAIKFNLER 757
GRES EKI SY+RLVVS+A+SYQ +GL+LQDL QEGSIGLLRGA +F+ +R
Sbjct: 182 GRESREKIIRSYRRLVVSIATSYQDKGLSLQDLIQEGSIGLLRGAERFDPQR 233
>ref|XP_006379083.1| hypothetical protein POPTR_0009s06210g [Populus trichocarpa]
gi|550331145|gb|ERP56880.1| hypothetical protein
POPTR_0009s06210g [Populus trichocarpa]
Length = 419
Score = 116 bits (291), Expect = 7e-24
Identities = 64/112 (57%), Positives = 82/112 (73%), Gaps = 3/112 (2%)
Frame = +2
Query: 431 KSRFMTPKEEATFSWYLKERARIEGVRTEMGG-QEL--SSSQWAKAAGISQHKLDKILCN 601
K +++PKEEA FS LK ARIE R +G QEL +S Q AKA + ++ +D +LC
Sbjct: 122 KRGYLSPKEEAEFSMCLKHEARIEAARRRIGEVQELDPTSKQLAKALRMEKNSVDNVLCK 181
Query: 602 GRESEEKITSSYQRLVVSVASSYQGRGLNLQDLTQEGSIGLLRGAIKFNLER 757
GRES EKI SY+RLVVS+A+SYQ +GL+LQDL QEGSIGLLRGA +F+ +R
Sbjct: 182 GRESREKIIRSYRRLVVSIATSYQDKGLSLQDLIQEGSIGLLRGAERFDPQR 233
>ref|XP_006379082.1| hypothetical protein POPTR_0009s06210g [Populus trichocarpa]
gi|550331144|gb|ERP56879.1| hypothetical protein
POPTR_0009s06210g [Populus trichocarpa]
Length = 284
Score = 116 bits (291), Expect = 7e-24
Identities = 64/112 (57%), Positives = 82/112 (73%), Gaps = 3/112 (2%)
Frame = +2
Query: 431 KSRFMTPKEEATFSWYLKERARIEGVRTEMGG-QEL--SSSQWAKAAGISQHKLDKILCN 601
K +++PKEEA FS LK ARIE R +G QEL +S Q AKA + ++ +D +LC
Sbjct: 122 KRGYLSPKEEAEFSMCLKHEARIEAARRRIGEVQELDPTSKQLAKALRMEKNSVDNVLCK 181
Query: 602 GRESEEKITSSYQRLVVSVASSYQGRGLNLQDLTQEGSIGLLRGAIKFNLER 757
GRES EKI SY+RLVVS+A+SYQ +GL+LQDL QEGSIGLLRGA +F+ +R
Sbjct: 182 GRESREKIIRSYRRLVVSIATSYQDKGLSLQDLIQEGSIGLLRGAERFDPQR 233
>ref|XP_006379081.1| hypothetical protein POPTR_0009s06210g [Populus trichocarpa]
gi|550331143|gb|ERP56878.1| hypothetical protein
POPTR_0009s06210g [Populus trichocarpa]
Length = 276
Score = 116 bits (291), Expect = 7e-24
Identities = 64/112 (57%), Positives = 82/112 (73%), Gaps = 3/112 (2%)
Frame = +2
Query: 431 KSRFMTPKEEATFSWYLKERARIEGVRTEMGG-QEL--SSSQWAKAAGISQHKLDKILCN 601
K +++PKEEA FS LK ARIE R +G QEL +S Q AKA + ++ +D +LC
Sbjct: 122 KRGYLSPKEEAEFSMCLKHEARIEAARRRIGEVQELDPTSKQLAKALRMEKNSVDNVLCK 181
Query: 602 GRESEEKITSSYQRLVVSVASSYQGRGLNLQDLTQEGSIGLLRGAIKFNLER 757
GRES EKI SY+RLVVS+A+SYQ +GL+LQDL QEGSIGLLRGA +F+ +R
Sbjct: 182 GRESREKIIRSYRRLVVSIATSYQDKGLSLQDLIQEGSIGLLRGAERFDPQR 233
>ref|XP_006379080.1| hypothetical protein POPTR_0009s06210g [Populus trichocarpa]
gi|550331142|gb|ERP56877.1| hypothetical protein
POPTR_0009s06210g [Populus trichocarpa]
Length = 331
Score = 116 bits (291), Expect = 7e-24
Identities = 64/112 (57%), Positives = 82/112 (73%), Gaps = 3/112 (2%)
Frame = +2
Query: 431 KSRFMTPKEEATFSWYLKERARIEGVRTEMGG-QEL--SSSQWAKAAGISQHKLDKILCN 601
K +++PKEEA FS LK ARIE R +G QEL +S Q AKA + ++ +D +LC
Sbjct: 122 KRGYLSPKEEAEFSMCLKHEARIEAARRRIGEVQELDPTSKQLAKALRMEKNSVDNVLCK 181
Query: 602 GRESEEKITSSYQRLVVSVASSYQGRGLNLQDLTQEGSIGLLRGAIKFNLER 757
GRES EKI SY+RLVVS+A+SYQ +GL+LQDL QEGSIGLLRGA +F+ +R
Sbjct: 182 GRESREKIIRSYRRLVVSIATSYQDKGLSLQDLIQEGSIGLLRGAERFDPQR 233
>ref|XP_004308689.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
[Fragaria vesca subsp. vesca]
Length = 452
Score = 114 bits (285), Expect = 4e-23
Identities = 67/127 (52%), Positives = 85/127 (66%), Gaps = 3/127 (2%)
Frame = +2
Query: 386 DLEDEKFVFVDKKAGKSRFMTPKEEATFSWYLKERARIEGVRT---EMGGQELSSSQWAK 556
+LED +F F G +++P+EEA LKE A++E RT E E +S Q A
Sbjct: 140 ELEDGRFSFGVVSYG---YLSPREEADCCMSLKEGAKLESERTRFTEAQEHEPTSKQLAN 196
Query: 557 AAGISQHKLDKILCNGRESEEKITSSYQRLVVSVASSYQGRGLNLQDLTQEGSIGLLRGA 736
A I +DK++CN RES+E+I SY+ LVVSVASSYQG+GL+LQDL QEGSIGLLRGA
Sbjct: 197 AMRIKMSSIDKVICNRRESQERIIKSYRGLVVSVASSYQGKGLSLQDLIQEGSIGLLRGA 256
Query: 737 IKFNLER 757
KF+ ER
Sbjct: 257 EKFDPER 263
>ref|XP_006482924.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
[Citrus sinensis]
Length = 436
Score = 112 bits (281), Expect = 1e-22
Identities = 64/130 (49%), Positives = 85/130 (65%), Gaps = 14/130 (10%)
Frame = +2
Query: 410 FVDKKAGK-----------SRFMTPKEEATFSWYLKERARIEGVRTEMGG---QELSSSQ 547
F+DK+ G+ + ++TP EEA + LKE A++E R + E S Q
Sbjct: 118 FLDKENGELDYNLVKCKTSNLYLTPSEEAEICYSLKEGAKLEEARKTVAQAEEHESISKQ 177
Query: 548 WAKAAGISQHKLDKILCNGRESEEKITSSYQRLVVSVASSYQGRGLNLQDLTQEGSIGLL 727
AKA G+ Q K+DKILC RES+E+I SY+ LVVS+A+ YQG+GL+L+DL QEGSIGLL
Sbjct: 178 LAKATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLL 237
Query: 728 RGAIKFNLER 757
RGA +FN ER
Sbjct: 238 RGAKRFNPER 247
>ref|XP_006438958.1| hypothetical protein CICLE_v10033747mg [Citrus clementina]
gi|557541154|gb|ESR52198.1| hypothetical protein
CICLE_v10033747mg [Citrus clementina]
Length = 436
Score = 112 bits (281), Expect = 1e-22
Identities = 64/130 (49%), Positives = 85/130 (65%), Gaps = 14/130 (10%)
Frame = +2
Query: 410 FVDKKAGK-----------SRFMTPKEEATFSWYLKERARIEGVRTEMGG---QELSSSQ 547
F+DK+ G+ + ++TP EEA + LKE A++E R + E S Q
Sbjct: 118 FLDKENGELDYNLVKCKTSNLYLTPSEEAEICYSLKEGAKLEEARKTVAQAEEHESISKQ 177
Query: 548 WAKAAGISQHKLDKILCNGRESEEKITSSYQRLVVSVASSYQGRGLNLQDLTQEGSIGLL 727
AKA G+ Q K+DKILC RES+E+I SY+ LVVS+A+ YQG+GL+L+DL QEGSIGLL
Sbjct: 178 LAKATGMKQSKVDKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLL 237
Query: 728 RGAIKFNLER 757
RGA +FN ER
Sbjct: 238 RGAKRFNPER 247
>gb|EXB95293.1| RNA polymerase sigma factor rpoD [Morus notabilis]
Length = 422
Score = 112 bits (280), Expect = 1e-22
Identities = 79/208 (37%), Positives = 117/208 (56%), Gaps = 8/208 (3%)
Frame = +2
Query: 158 SPLAYTHSSVQEDALVISSG-ELSGAAMASARKSEKILDRNGSENDVKNKEHYWCNEVTF 334
SP + V DAL++++ E A A+A+ + L S +V + +E+T
Sbjct: 29 SPSKVGVNLVSNDALIVAAAAEAVTLARAAAKAARDALAEAASVGEVWSGNK--SSELTM 86
Query: 335 XXXXXXXXXSILECV----KTDLEDEKFVFVDKKAGKSRFMTPKEEATFSWYLKERARIE 502
+ LE + K+D ED +F K G +++P+EEA LKE A++E
Sbjct: 87 RRKKRKRGKT-LELLDTDEKSDGEDMRFSIGPMKLG---YLSPREEAECCLILKEGAKLE 142
Query: 503 GVRTEMGGQE---LSSSQWAKAAGISQHKLDKILCNGRESEEKITSSYQRLVVSVASSYQ 673
R M E +S + AKA G+ +DK+LC+ RES+E+I+ SY+RLVVSVA+ YQ
Sbjct: 143 ATRLRMTNSEDHEPTSKELAKAMGMEMRSIDKMLCDKRESQERISRSYRRLVVSVAAGYQ 202
Query: 674 GRGLNLQDLTQEGSIGLLRGAIKFNLER 757
G+GL+ DL QEGS+GLLRGA KF+ +R
Sbjct: 203 GKGLSFPDLIQEGSVGLLRGAQKFDPQR 230
>gb|EMJ20400.1| hypothetical protein PRUPE_ppa017025mg [Prunus persica]
Length = 440
Score = 112 bits (280), Expect = 1e-22
Identities = 70/134 (52%), Positives = 86/134 (64%), Gaps = 5/134 (3%)
Frame = +2
Query: 371 ECVKTDLEDE--KFVFVDKKAGKSRFMTPKEEATFSWYLKERARIEGVR---TEMGGQEL 535
E +K D+ED F FV + ++P+EEA LKE AR+E R E E
Sbjct: 123 EEMKRDVEDGMVSFGFV-----RYEHLSPREEAECCLSLKEGARLESERFRVVEAQKHEP 177
Query: 536 SSSQWAKAAGISQHKLDKILCNGRESEEKITSSYQRLVVSVASSYQGRGLNLQDLTQEGS 715
+S Q AKA G+ +DK+LC RES+EKI SY+ LVVSVASSYQG+GL+ QDL QEGS
Sbjct: 178 TSKQLAKAMGMKMRSIDKVLCKRRESQEKIIRSYRGLVVSVASSYQGKGLSFQDLIQEGS 237
Query: 716 IGLLRGAIKFNLER 757
IGLLRGA KF+ ER
Sbjct: 238 IGLLRGAEKFDHER 251
>ref|XP_006399871.1| hypothetical protein EUTSA_v10013654mg [Eutrema salsugineum]
gi|557100961|gb|ESQ41324.1| hypothetical protein
EUTSA_v10013654mg [Eutrema salsugineum]
Length = 421
Score = 108 bits (271), Expect = 1e-21
Identities = 79/213 (37%), Positives = 108/213 (50%), Gaps = 13/213 (6%)
Frame = +2
Query: 158 SPLAYTHSSVQEDALVISSGELS-GAAMASARKSEKILDRNGSENDVKNKEHYWC----- 319
SPL T Q + S + GAA+ S E +DR +E+ V K W
Sbjct: 22 SPLLRTTHQCQPSSSSTSPSSIKLGAALVSG---EATVDR-AAESSVMIKPEKWAFQLEK 77
Query: 320 -------NEVTFXXXXXXXXXSILECVKTDLEDEKFVFVDKKAGKSRFMTPKEEATFSWY 478
V F ++ V+ + E E + V A +S F++ EE Y
Sbjct: 78 RRKRRRRRRVGFERLEPEEDENVGPEVEAEAEAEA-ISVPVAASRSGFLSRLEEVQLCLY 136
Query: 479 LKERARIEGVRTEMGGQELSSSQWAKAAGISQHKLDKILCNGRESEEKITSSYQRLVVSV 658
LKE A++E V T + E+ S + G + ++ILC RE+ EKIT Y+RLVVS+
Sbjct: 137 LKEGAKLENVGTSVEENEIVSVLLSSGKGKKKRSANEILCRRREAREKITRCYRRLVVSI 196
Query: 659 ASSYQGRGLNLQDLTQEGSIGLLRGAIKFNLER 757
A+ YQG+GLNLQDL QEGSIGLLRGA +F+ ER
Sbjct: 197 ATGYQGKGLNLQDLIQEGSIGLLRGAERFDPER 229
>dbj|BAJ34231.1| unnamed protein product [Thellungiella halophila]
Length = 269
Score = 108 bits (271), Expect = 1e-21
Identities = 79/213 (37%), Positives = 108/213 (50%), Gaps = 13/213 (6%)
Frame = +2
Query: 158 SPLAYTHSSVQEDALVISSGELS-GAAMASARKSEKILDRNGSENDVKNKEHYWC----- 319
SPL T Q + S + GAA+ S E +DR +E+ V K W
Sbjct: 22 SPLLRTTHQCQPSSSSTSPSSIKLGAALVSG---ETTVDR-AAESSVMIKPEKWAFQLEK 77
Query: 320 -------NEVTFXXXXXXXXXSILECVKTDLEDEKFVFVDKKAGKSRFMTPKEEATFSWY 478
V F ++ V+ + E E + V A +S F++ EE Y
Sbjct: 78 RRKRRRRRRVGFERLEPEEDENVGPEVEAEAEAEA-ISVPVAASRSGFLSRLEEVQLCLY 136
Query: 479 LKERARIEGVRTEMGGQELSSSQWAKAAGISQHKLDKILCNGRESEEKITSSYQRLVVSV 658
LKE A++E V T + E+ S + G + ++ILC RE+ EKIT Y+RLVVS+
Sbjct: 137 LKEGAKLENVGTSVEENEIVSVLLSSGKGKKKRSANEILCRRREAREKITRCYRRLVVSI 196
Query: 659 ASSYQGRGLNLQDLTQEGSIGLLRGAIKFNLER 757
A+ YQG+GLNLQDL QEGSIGLLRGA +F+ ER
Sbjct: 197 ATGYQGKGLNLQDLIQEGSIGLLRGAERFDPER 229
>ref|XP_006851106.1| hypothetical protein AMTR_s00025p00248060 [Amborella trichopoda]
gi|548854777|gb|ERN12687.1| hypothetical protein
AMTR_s00025p00248060 [Amborella trichopoda]
Length = 449
Score = 107 bits (267), Expect = 4e-21
Identities = 55/117 (47%), Positives = 81/117 (69%), Gaps = 3/117 (2%)
Frame = +2
Query: 416 DKKAGKSRFMTPKEEATFSWYLKERARIEGVRT---EMGGQELSSSQWAKAAGISQHKLD 586
+K + ++T +EEA FS L+E AR+EG+R E G+E S QWA+A G+ + ++
Sbjct: 142 EKSSSSEDYLTRREEAEFSLCLREGARLEGIRRKLREKRGREPSRGQWAEAVGMRESSME 201
Query: 587 KILCNGRESEEKITSSYQRLVVSVASSYQGRGLNLQDLTQEGSIGLLRGAIKFNLER 757
+ L RE +IT+SY+RLVVS+A+SY G+G++L DL QEGS+GLLRGA +F+ R
Sbjct: 202 RRLGIARECRNRITNSYRRLVVSIATSYPGKGMSLSDLIQEGSLGLLRGAERFDHRR 258
>ref|XP_002517769.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223543041|gb|EEF44576.1| RNA polymerase sigma factor
rpoD, putative [Ricinus communis]
Length = 389
Score = 106 bits (265), Expect = 7e-21
Identities = 73/213 (34%), Positives = 121/213 (56%), Gaps = 9/213 (4%)
Frame = +2
Query: 146 SSYASPLAYTHS-SVQEDALVISSGE----LSGAAMASARKSEKILDRNGSENDVKNKEH 310
SSY S ++ S +V +AL +++ L+ AA+ +A+++ ++ +G +
Sbjct: 21 SSYYSSCKFSASLAVSNEALSMAAATEAVALASAAVEAAKEAVTLVSLSGESGN------ 74
Query: 311 YWCNEVTFXXXXXXXXXSILECVKTDLE-DEKFVFVDKKAGKSRFMTPKEEATFSWYLKE 487
+ V +EC+K + E D++ + + +++ EEA F LK+
Sbjct: 75 ---SLVARRKKRRKRRKGFIECLKVEEERDDQCEGALFQPVNNGYLSSIEEAEFCLCLKD 131
Query: 488 RARIEGVR---TEMGGQELSSSQWAKAAGISQHKLDKILCNGRESEEKITSSYQRLVVSV 658
AR+E R E E +S Q A+A + + +DKILC GR+S E+IT +Y+RLV+S+
Sbjct: 132 HARVEAARRRIAETQEHEPTSKQLAEALRMRKKNVDKILCKGRQSRERITGNYRRLVLSI 191
Query: 659 ASSYQGRGLNLQDLTQEGSIGLLRGAIKFNLER 757
A+ Y+G+GL+LQDL QEGSIGLLRGA +F+ +R
Sbjct: 192 ANRYRGKGLSLQDLIQEGSIGLLRGAERFDPKR 224
>ref|NP_196877.1| sigma factor 4 [Arabidopsis thaliana]
gi|75216509|sp|Q9ZSL6.1|SIGD_ARATH RecName: Full=RNA
polymerase sigma factor sigD, chloroplastic; Short=Sigma
factor D; Short=Sigma-D; AltName: Full=RNA polymerase
sigma factor sig4; Short=Atsig4; Short=Sigma factor 4;
Flags: Precursor gi|3983260|gb|AAC97954.1| sigma-like
factor [Arabidopsis thaliana] gi|4972296|dbj|BAA78110.1|
RNA polymerase sigma subunit SigD [Arabidopsis thaliana]
gi|9758039|dbj|BAB08700.1| sigma-like factor
[Arabidopsis thaliana] gi|332004550|gb|AED91933.1| sigma
factor 4 [Arabidopsis thaliana]
Length = 419
Score = 103 bits (257), Expect = 6e-20
Identities = 54/111 (48%), Positives = 74/111 (66%)
Frame = +2
Query: 425 AGKSRFMTPKEEATFSWYLKERARIEGVRTEMGGQELSSSQWAKAAGISQHKLDKILCNG 604
A +S F++ EE YLKE A++E + T + E+ S A G + ++ILC
Sbjct: 117 ASRSGFLSRLEEVQLCLYLKEGAKLENLGTSVEENEMVSVLLASGRGKKKRSANEILCRR 176
Query: 605 RESEEKITSSYQRLVVSVASSYQGRGLNLQDLTQEGSIGLLRGAIKFNLER 757
+E+ EKIT Y+RLVVS+A+ YQG+GLNLQDL QEGSIGLLRGA +F+ +R
Sbjct: 177 KEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDR 227
>dbj|BAA78111.1| RNA polymerase sigma subunit SigD* [Arabidopsis thaliana]
gi|16649075|gb|AAL24389.1| sigma-like factor
[Arabidopsis thaliana] gi|21387209|gb|AAM48008.1|
sigma-like factor [Arabidopsis thaliana]
Length = 267
Score = 103 bits (257), Expect = 6e-20
Identities = 54/111 (48%), Positives = 74/111 (66%)
Frame = +2
Query: 425 AGKSRFMTPKEEATFSWYLKERARIEGVRTEMGGQELSSSQWAKAAGISQHKLDKILCNG 604
A +S F++ EE YLKE A++E + T + E+ S A G + ++ILC
Sbjct: 117 ASRSGFLSRLEEVQLCLYLKEGAKLENLGTSVEENEMVSVLLASGRGKKKRSANEILCRR 176
Query: 605 RESEEKITSSYQRLVVSVASSYQGRGLNLQDLTQEGSIGLLRGAIKFNLER 757
+E+ EKIT Y+RLVVS+A+ YQG+GLNLQDL QEGSIGLLRGA +F+ +R
Sbjct: 177 KEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDR 227