BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia26_contig00034257
         (829 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004173875.1| PREDICTED: DNA-directed RNA polymerase subun...   357   e-111
ref|YP_007353946.1| RNA polymerase alpha subunit (chloroplast) [...   406   e-111
ref|YP_004935698.1| rpoA gene product (chloroplast) [Sesamum ind...   405   e-110
gb|ADD31211.1| RNA polymerase alpha subunit protein [Antirrhinum...   405   e-110
ref|YP_008815969.1| RNA polymerase alpha subunit (chloroplast) [...   404   e-110
ref|YP_008964066.1| RNA polymerase subunit alpha [Ajuga reptans]...   404   e-110
ref|YP_003359390.1| RNA polymerase alpha subunit (chloroplast) [...   402   e-110
ref|YP_008964898.1| RNA polymerase alpha subunit (chloroplast) [...   399   e-109
ref|YP_538881.1| RNA polymerase alpha subunit [Solanum bulbocast...   397   e-108
gb|ADD31214.1| RNA polymerase alpha subunit protein [Ehretia acu...   397   e-108
ref|XP_003606056.1| 30S ribosomal protein S11 [Medicago truncatu...   349   e-108
ref|XP_004228576.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   395   e-107
ref|YP_008563120.1| RNA polymerase alpha subunit (chloroplast) [...   395   e-107
ref|YP_006666062.1| RNA polymerase alpha subunit (chloroplast) [...   395   e-107
gb|AGW04317.1| RNA polymerase alpha subunit [Secamone afzelii]        394   e-107
gb|ADD31219.1| RNA polymerase alpha subunit protein [Nerium olea...   394   e-107
ref|NP_783263.1| RNA polymerase alpha subunit [Atropa belladonna...   394   e-107
ref|YP_008081297.1| RNA polymerase alpha subunit (chloroplast) [...   394   e-107
gb|ADD31215.1| RNA polymerase alpha subunit protein [Ilex cornuta]    393   e-107
ref|NP_054532.1| RNA polymerase alpha subunit [Nicotiana tabacum...   393   e-107

>ref|XP_004173875.1| PREDICTED: DNA-directed RNA polymerase subunit alpha-like [Cucumis
           sativus]
          Length = 466

 Score =  357 bits (915), Expect(2) = e-111
 Identities = 174/206 (84%), Positives = 188/206 (91%)
 Frame = -1

Query: 619 REKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTSI 440
           R+K+ VSTRTL+WKCVESR DSKRLYYGRFILSPLMKGQ DTIGIAMR+ALLGEIEGT I
Sbjct: 136 RQKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGTCI 195

Query: 439 TRVKFENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDMI 260
           TR K E +PHEYSTI GIQESVHEILMNLKEIVLRSNLYGT DASICV+GPG VTAQD+I
Sbjct: 196 TRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDII 255

Query: 259 LPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVRNV 80
           LPP VEI+DNTQHIA+L EPINLCI L+IERNRGY I+ P+NFQD SYP+DA+FMPVRNV
Sbjct: 256 LPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNV 315

Query: 79  NHSIHSYGNGNEKQEILFPEIWTNGS 2
           NHSIHSY NGNEKQEILF EIWTNGS
Sbjct: 316 NHSIHSYVNGNEKQEILFLEIWTNGS 341



 Score = 73.9 bits (180), Expect(2) = e-111
 Identities = 33/35 (94%), Positives = 35/35 (100%)
 Frame = -2

Query: 828 KGPGLGRDAALRAIRRSGILLTFVRDVTPMPHNGC 724
           KGPGLGRDAALRAIRRSGILL+F+RDVTPMPHNGC
Sbjct: 96  KGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGC 130


>ref|YP_007353946.1| RNA polymerase alpha subunit (chloroplast) [Tectona grandis]
           gi|438687635|emb|CCP47162.1| RNA polymerase alpha
           subunit (chloroplast) [Tectona grandis]
           gi|438688319|emb|CCP47251.1| RNA polymerase alpha
           subunit (chloroplast) [Tectona grandis]
           gi|438688443|emb|CCP47340.1| RNA polymerase alpha
           subunit (chloroplast) [Tectona grandis]
          Length = 337

 Score =  406 bits (1043), Expect = e-111
 Identities = 199/208 (95%), Positives = 203/208 (97%)
 Frame = -1

Query: 625 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 446
           MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1   MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 445 SITRVKFENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 266
            ITRVK ENVPHEYSTITGIQESVHEI+MNLKEIVLRSNLYGTC ASICVRGPGYVTAQD
Sbjct: 61  CITRVKSENVPHEYSTITGIQESVHEIIMNLKEIVLRSNLYGTCGASICVRGPGYVTAQD 120

Query: 265 MILPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVR 86
           +ILPPYVEI+DNTQHIASLTEPINLCI LEIERNRGYLIKMPHNFQDGSYP+DAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPINLCIELEIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 180

Query: 85  NVNHSIHSYGNGNEKQEILFPEIWTNGS 2
           NVNHSIHSYGNGNEKQEILF EIWTNGS
Sbjct: 181 NVNHSIHSYGNGNEKQEILFLEIWTNGS 208


>ref|YP_004935698.1| rpoA gene product (chloroplast) [Sesamum indicum]
           gi|347448327|gb|AEO92738.1| RNA polymerase alpha subunit
           (chloroplast) [Sesamum indicum]
           gi|496538633|gb|AGL45368.1| RpoA (chloroplast) [Sesamum
           indicum]
          Length = 337

 Score =  405 bits (1040), Expect = e-110
 Identities = 198/208 (95%), Positives = 203/208 (97%)
 Frame = -1

Query: 625 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 446
           MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1   MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 445 SITRVKFENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 266
            ITRVK ENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICV+GPGYVTAQD
Sbjct: 61  CITRVKSENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVKGPGYVTAQD 120

Query: 265 MILPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVR 86
           +ILPPYVEI+DNTQHIASLTEPI+ CIGLEIERNRGYLIKMP NFQDGSYP+DAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIHFCIGLEIERNRGYLIKMPQNFQDGSYPIDAVFMPVR 180

Query: 85  NVNHSIHSYGNGNEKQEILFPEIWTNGS 2
           NVNHSIHSYGNGNEKQEILF EIWTNGS
Sbjct: 181 NVNHSIHSYGNGNEKQEILFLEIWTNGS 208


>gb|ADD31211.1| RNA polymerase alpha subunit protein [Antirrhinum majus]
          Length = 336

 Score =  405 bits (1040), Expect = e-110
 Identities = 197/208 (94%), Positives = 202/208 (97%)
 Frame = -1

Query: 625 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 446
           MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1   MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 445 SITRVKFENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 266
            ITRVK EN+PHEYSTITGIQESVHEILMNLKEIVLR+NLYGTCDASIC RGPGYVTAQD
Sbjct: 61  CITRVKSENIPHEYSTITGIQESVHEILMNLKEIVLRTNLYGTCDASICARGPGYVTAQD 120

Query: 265 MILPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVR 86
           +ILPPYVEI+DNTQHIASLTEPIN CIGLEIERNRGYLIKMPHNFQDGSY +DAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPINFCIGLEIERNRGYLIKMPHNFQDGSYSIDAVFMPVR 180

Query: 85  NVNHSIHSYGNGNEKQEILFPEIWTNGS 2
           NVNHSIHSYGNGNEKQEILF EIWTNGS
Sbjct: 181 NVNHSIHSYGNGNEKQEILFLEIWTNGS 208


>ref|YP_008815969.1| RNA polymerase alpha subunit (chloroplast) [Lindenbergia
           philippensis] gi|557136896|emb|CDI43950.1| RNA
           polymerase alpha subunit (chloroplast) [Lindenbergia
           philippensis]
          Length = 336

 Score =  404 bits (1038), Expect = e-110
 Identities = 197/208 (94%), Positives = 202/208 (97%)
 Frame = -1

Query: 625 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 446
           MVREK+TVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRR LLGEIEGT
Sbjct: 1   MVREKITVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRVLLGEIEGT 60

Query: 445 SITRVKFENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 266
            ITRVK ENV HEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICV GPGYVTAQD
Sbjct: 61  CITRVKSENVSHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVMGPGYVTAQD 120

Query: 265 MILPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVR 86
           +ILPPYVEI+DNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYP+DAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPIDAVFMPVR 180

Query: 85  NVNHSIHSYGNGNEKQEILFPEIWTNGS 2
           N+NHSIHSYGNGNEKQEILF EIWTNGS
Sbjct: 181 NMNHSIHSYGNGNEKQEILFLEIWTNGS 208


>ref|YP_008964066.1| RNA polymerase subunit alpha [Ajuga reptans]
           gi|558697182|gb|AHA84937.1| RNA polymerase subunit alpha
           [Ajuga reptans]
          Length = 337

 Score =  404 bits (1037), Expect = e-110
 Identities = 198/208 (95%), Positives = 203/208 (97%)
 Frame = -1

Query: 625 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 446
           MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1   MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 445 SITRVKFENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 266
            ITRVK ENVPHEYSTITGIQESVHEI+MNLKEIVLRSNLYGT DASICVRGPGYVTAQD
Sbjct: 61  CITRVKSENVPHEYSTITGIQESVHEIIMNLKEIVLRSNLYGTFDASICVRGPGYVTAQD 120

Query: 265 MILPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVR 86
           +ILPPYVEI+DNTQHIASLTEPINLCIGL+IERNRGYLIKMPH FQDGSYP+DAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPINLCIGLKIERNRGYLIKMPHKFQDGSYPIDAVFMPVR 180

Query: 85  NVNHSIHSYGNGNEKQEILFPEIWTNGS 2
           NVNHSIHSYGNGNEKQEILF EIWTNGS
Sbjct: 181 NVNHSIHSYGNGNEKQEILFLEIWTNGS 208


>ref|YP_003359390.1| RNA polymerase alpha subunit (chloroplast) [Olea europaea]
           gi|330850774|ref|YP_004376452.1| RNA polymerase alpha
           subunit [Olea europaea subsp. europaea]
           gi|334700313|ref|YP_004563812.1| RNA polymerase alpha
           subunit [Olea europaea subsp. cuspidata]
           gi|334701650|ref|YP_004564035.1| RNA polymerase alpha
           subunit [Olea woodiana subsp. woodiana]
           gi|334701919|ref|YP_004564528.1| RNA polymerase alpha
           subunit [Olea europaea subsp. maroccana]
           gi|281428718|gb|ADA69957.1| RNA polymerase alpha subunit
           (chloroplast) [Olea europaea]
           gi|291059284|gb|ADD72120.1| RNA polymerase alpha subunit
           [Olea europaea] gi|328795464|emb|CBR30346.1| RNA
           polymerase alpha subunit [Olea europaea subsp. europaea]
           gi|334084432|emb|CBR23861.1| RNA polymerase alpha
           subunit [Olea europaea subsp. cuspidata]
           gi|334084518|emb|CBR24655.1| RNA polymerase alpha
           subunit [Olea europaea subsp. europaea]
           gi|334084604|emb|CBR30439.1| RNA polymerase alpha
           subunit [Olea europaea subsp. europaea]
           gi|334084690|emb|CBS29383.1| RNA polymerase alpha
           subunit [Olea woodiana subsp. woodiana]
           gi|334084895|emb|CBS29273.1| RNA polymerase alpha
           subunit [Olea europaea subsp. maroccana]
           gi|334084981|emb|CBJ04329.1| RNA polymerase alpha
           subunit [Olea europaea subsp. cuspidata]
           gi|334085067|emb|CBR23770.1| RNA polymerase alpha
           subunit [Olea europaea subsp. cuspidata]
           gi|510934435|emb|CCQ09133.1| RNA polymerase alpha
           subunit (chloroplast) [Olea europaea subsp. europaea]
          Length = 337

 Score =  402 bits (1033), Expect = e-110
 Identities = 196/208 (94%), Positives = 202/208 (97%)
 Frame = -1

Query: 625 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 446
           MVREKVTVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1   MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 445 SITRVKFENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 266
            ITRVK ENVPHEYSTI GIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD
Sbjct: 61  CITRVKSENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120

Query: 265 MILPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVR 86
           +ILPPYVEI+DNTQHIASLTEPI+LCIGL+I+RNRGYLIKMPHNFQDGSYP+DAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIKRNRGYLIKMPHNFQDGSYPIDAVFMPVR 180

Query: 85  NVNHSIHSYGNGNEKQEILFPEIWTNGS 2
           N NHSIHSYGNGNEKQEILF EIWTNGS
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGS 208


>ref|YP_008964898.1| RNA polymerase alpha subunit (chloroplast) [Schwalbea americana]
           gi|560176732|emb|CDJ38660.1| RNA polymerase alpha
           subunit (chloroplast) [Schwalbea americana]
          Length = 331

 Score =  399 bits (1024), Expect = e-109
 Identities = 195/208 (93%), Positives = 201/208 (96%)
 Frame = -1

Query: 625 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 446
           MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPL+KGQADTIGIAMRRALLGEIEGT
Sbjct: 1   MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLLKGQADTIGIAMRRALLGEIEGT 60

Query: 445 SITRVKFENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 266
            ITRVK ENVPHEYST+TGIQESVHEILMNLKEIVLRSNLYGT DASICV+GPGYVTAQD
Sbjct: 61  CITRVKSENVPHEYSTLTGIQESVHEILMNLKEIVLRSNLYGTSDASICVKGPGYVTAQD 120

Query: 265 MILPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVR 86
           +ILPPYVEI+DN QHIASLTEPINLCIGLEIERNRGYL KMPHNFQDGSYP+DAVFMPVR
Sbjct: 121 IILPPYVEIVDNMQHIASLTEPINLCIGLEIERNRGYLRKMPHNFQDGSYPIDAVFMPVR 180

Query: 85  NVNHSIHSYGNGNEKQEILFPEIWTNGS 2
           NVNHSIHSYGNGNE QEILF EIWTNGS
Sbjct: 181 NVNHSIHSYGNGNENQEILFLEIWTNGS 208


>ref|YP_538881.1| RNA polymerase alpha subunit [Solanum bulbocastanum]
           gi|108773161|ref|YP_635671.1| RNA polymerase alpha
           subunit [Solanum tuberosum]
           gi|565356831|ref|XP_006345266.1| PREDICTED: DNA-directed
           RNA polymerase subunit alpha-like [Solanum tuberosum]
           gi|90110868|sp|Q2VEE8.1|RPOA_SOLTU RecName:
           Full=DNA-directed RNA polymerase subunit alpha;
           Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit alpha; Short=RNA polymerase subunit alpha
           gi|109900624|sp|Q2MIF6.1|RPOA_SOLBU RecName:
           Full=DNA-directed RNA polymerase subunit alpha;
           Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit alpha; Short=RNA polymerase subunit alpha
           gi|82754657|gb|ABB90071.1| RNA polymerase alpha chain
           [Solanum tuberosum] gi|84371926|gb|ABC56244.1| RNA
           polymerase alpha subunit [Solanum bulbocastanum]
           gi|88656835|gb|ABD47088.1| RNA polymerase alpha subunit
           [Solanum tuberosum] gi|329124614|gb|AEB72171.1| RNA
           polymerase alpha subunit (chloroplast) [Solanum
           tuberosum] gi|329124701|gb|AEB72257.1| RNA polymerase
           alpha subunit (chloroplast) [Solanum tuberosum]
          Length = 337

 Score =  397 bits (1019), Expect = e-108
 Identities = 194/208 (93%), Positives = 200/208 (96%)
 Frame = -1

Query: 625 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 446
           MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1   MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 445 SITRVKFENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 266
            ITRVK E VPHEYSTITGIQESVHEILMNLKEIVLRSNLYGT DASICV+GPGYVTAQD
Sbjct: 61  CITRVKSEKVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTSDASICVKGPGYVTAQD 120

Query: 265 MILPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVR 86
           +ILPPYVEI+DNTQHIASLTEPI+ CIGL+IERNRGYLIK PHNFQDGSYP+DAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVR 180

Query: 85  NVNHSIHSYGNGNEKQEILFPEIWTNGS 2
           N NHSIHSYGNGNEKQEILF EIWTNGS
Sbjct: 181 NANHSIHSYGNGNEKQEILFIEIWTNGS 208


>gb|ADD31214.1| RNA polymerase alpha subunit protein [Ehretia acuminata]
          Length = 339

 Score =  397 bits (1019), Expect = e-108
 Identities = 196/210 (93%), Positives = 203/210 (96%), Gaps = 2/210 (0%)
 Frame = -1

Query: 625 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 446
           MVREKV VSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1   MVREKVIVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 445 SITRVKFEN--VPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTA 272
           SITRVK E+  VPHEYSTI+GIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTA
Sbjct: 61  SITRVKSESEKVPHEYSTISGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTA 120

Query: 271 QDMILPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMP 92
           QD+ILPPYVEI+DNTQHIASLTEPI+LCIGL+IERNRGYLIK PHNFQDGSYP+DAVFMP
Sbjct: 121 QDIILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMP 180

Query: 91  VRNVNHSIHSYGNGNEKQEILFPEIWTNGS 2
           VRN NHSIHSYGNGNEKQEILF EIWTNGS
Sbjct: 181 VRNANHSIHSYGNGNEKQEILFLEIWTNGS 210


>ref|XP_003606056.1| 30S ribosomal protein S11 [Medicago truncatula]
           gi|355507111|gb|AES88253.1| 30S ribosomal protein S11
           [Medicago truncatula]
          Length = 466

 Score =  349 bits (896), Expect(2) = e-108
 Identities = 172/206 (83%), Positives = 183/206 (88%)
 Frame = -1

Query: 619 REKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTSI 440
           R+KV VS RTLQWKCVESR DSKRLYYGRFILSPL KGQADTIGIAMRR LLGEIEGT I
Sbjct: 136 RQKVKVSARTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTIGIAMRRILLGEIEGTCI 195

Query: 439 TRVKFENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDMI 260
           TR K E +PHEYSTI GIQES+HEILMNLKEIVL+SNLYGT DASIC +GPGYVTAQD+I
Sbjct: 196 TRAKSEKIPHEYSTIVGIQESIHEILMNLKEIVLKSNLYGTRDASICFKGPGYVTAQDII 255

Query: 259 LPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVRNV 80
           LPP VEI+DNTQHIA+LTEPINLCI L+IER RGY IK  +N QDGSY +DAVFMPVRN 
Sbjct: 256 LPPSVEIVDNTQHIANLTEPINLCIELQIERKRGYRIKTLNNIQDGSYTIDAVFMPVRNA 315

Query: 79  NHSIHSYGNGNEKQEILFPEIWTNGS 2
           NHSIHSY NGNEKQEILF EIWTNGS
Sbjct: 316 NHSIHSYVNGNEKQEILFLEIWTNGS 341



 Score = 69.3 bits (168), Expect(2) = e-108
 Identities = 31/35 (88%), Positives = 33/35 (94%)
 Frame = -2

Query: 828 KGPGLGRDAALRAIRRSGILLTFVRDVTPMPHNGC 724
           KGPGLGRDAALRAI RSGILL F+RDVTP+PHNGC
Sbjct: 96  KGPGLGRDAALRAIARSGILLRFIRDVTPIPHNGC 130


>ref|XP_004228576.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase subunit
           alpha-like [Solanum lycopersicum]
          Length = 337

 Score =  395 bits (1015), Expect = e-107
 Identities = 193/208 (92%), Positives = 200/208 (96%)
 Frame = -1

Query: 625 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 446
           MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1   MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 445 SITRVKFENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 266
            ITRVK E VPHEYSTITGIQESVHEILMNLKEIVLRSNLYGT +ASICV+GPGYVTAQD
Sbjct: 61  CITRVKSEKVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTSEASICVKGPGYVTAQD 120

Query: 265 MILPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVR 86
           +ILPPYVEI+DNTQHIASLTEPI+ CIGL+IERNRGYLIK PHNFQDGSYP+DAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVR 180

Query: 85  NVNHSIHSYGNGNEKQEILFPEIWTNGS 2
           N NHSIHSYGNGNEKQEILF EIWTNGS
Sbjct: 181 NANHSIHSYGNGNEKQEILFIEIWTNGS 208


>ref|YP_008563120.1| RNA polymerase alpha subunit (chloroplast) [Solanum lycopersicum]
           gi|544170704|ref|AP_004960.1| RNA polymerase alpha chain
           (chloroplast) [Solanum lycopersicum]
           gi|109900622|sp|Q2MI69.1|RPOA_SOLLC RecName:
           Full=DNA-directed RNA polymerase subunit alpha;
           Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit alpha; Short=RNA polymerase subunit alpha
           gi|84372014|gb|ABC56331.1| RNA polymerase alpha subunit
           (chloroplast) [Solanum lycopersicum]
           gi|89241703|emb|CAJ32426.1| RNA polymerase alpha chain
           [Solanum lycopersicum]
          Length = 337

 Score =  395 bits (1015), Expect = e-107
 Identities = 193/208 (92%), Positives = 200/208 (96%)
 Frame = -1

Query: 625 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 446
           MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1   MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 445 SITRVKFENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 266
            ITRVK E VPHEYSTITGIQESVHEILMNLKEIVLRSNLYGT +ASICV+GPGYVTAQD
Sbjct: 61  CITRVKSEKVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTSEASICVKGPGYVTAQD 120

Query: 265 MILPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVR 86
           +ILPPYVEI+DNTQHIASLTEPI+ CIGL+IERNRGYLIK PHNFQDGSYP+DAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVR 180

Query: 85  NVNHSIHSYGNGNEKQEILFPEIWTNGS 2
           N NHSIHSYGNGNEKQEILF EIWTNGS
Sbjct: 181 NANHSIHSYGNGNEKQEILFIEIWTNGS 208


>ref|YP_006666062.1| RNA polymerase alpha subunit (chloroplast) [Capsicum annuum]
           gi|401065964|gb|AFP90808.1| RNA polymerase alpha subunit
           (chloroplast) [Capsicum annuum]
          Length = 337

 Score =  395 bits (1014), Expect = e-107
 Identities = 193/208 (92%), Positives = 199/208 (95%)
 Frame = -1

Query: 625 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 446
           MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1   MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 445 SITRVKFENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 266
            ITRVK E VPHEYSTITGIQESVHEILMNLKEIVLRSNLYGT DASICV+GPGYVTAQD
Sbjct: 61  CITRVKSEKVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTSDASICVKGPGYVTAQD 120

Query: 265 MILPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVR 86
           +ILPPYVE +DNTQHIASLTEPI+ CIGL+IERNRGYLIK PHNFQDGSYP+DAVFMPVR
Sbjct: 121 IILPPYVETVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVR 180

Query: 85  NVNHSIHSYGNGNEKQEILFPEIWTNGS 2
           N NHSIHSYGNGNEKQEILF EIWTNGS
Sbjct: 181 NANHSIHSYGNGNEKQEILFIEIWTNGS 208


>gb|AGW04317.1| RNA polymerase alpha subunit [Secamone afzelii]
          Length = 337

 Score =  394 bits (1013), Expect = e-107
 Identities = 190/208 (91%), Positives = 200/208 (96%)
 Frame = -1

Query: 625 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 446
           MVREK+TVSTRTLQWKCVESRT+SKRLYYGRFILSPL+KGQADTIGIAMRRALLGEIEGT
Sbjct: 1   MVREKITVSTRTLQWKCVESRTESKRLYYGRFILSPLLKGQADTIGIAMRRALLGEIEGT 60

Query: 445 SITRVKFENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 266
            ITRVKF+ VPHEYSTI GIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD
Sbjct: 61  CITRVKFDKVPHEYSTINGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120

Query: 265 MILPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVR 86
           ++LPPYVEI+DNTQHIASLTEPINLCIGL+IERNRGYLI+ P N QDGSYP+DAVFMPVR
Sbjct: 121 IVLPPYVEIVDNTQHIASLTEPINLCIGLQIERNRGYLIQTPQNVQDGSYPIDAVFMPVR 180

Query: 85  NVNHSIHSYGNGNEKQEILFPEIWTNGS 2
           N NHSIHSYGNGNEKQEILF EIWTNGS
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGS 208


>gb|ADD31219.1| RNA polymerase alpha subunit protein [Nerium oleander]
          Length = 337

 Score =  394 bits (1013), Expect = e-107
 Identities = 190/208 (91%), Positives = 200/208 (96%)
 Frame = -1

Query: 625 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 446
           MVREK+TVSTRTLQWKCVESRT+SKRLYYGRFILSPL+KGQADTIGIAMRRALLGEIEGT
Sbjct: 1   MVREKITVSTRTLQWKCVESRTESKRLYYGRFILSPLLKGQADTIGIAMRRALLGEIEGT 60

Query: 445 SITRVKFENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 266
            ITRVKF+ VPHEYSTI GIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD
Sbjct: 61  CITRVKFDKVPHEYSTIKGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120

Query: 265 MILPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVR 86
           ++LPPYVEI+DNTQHIASL EPINLCIGL+IERNRGYLI+ P NFQDGSYP+DAVFMPVR
Sbjct: 121 IVLPPYVEIVDNTQHIASLMEPINLCIGLQIERNRGYLIQTPQNFQDGSYPIDAVFMPVR 180

Query: 85  NVNHSIHSYGNGNEKQEILFPEIWTNGS 2
           N NHSIHSYGNGNEKQEILF EIWTNGS
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGS 208


>ref|NP_783263.1| RNA polymerase alpha subunit [Atropa belladonna]
           gi|41688712|sp|Q8S8V9.1|RPOA_ATRBE RecName:
           Full=DNA-directed RNA polymerase subunit alpha;
           Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit alpha; Short=RNA polymerase subunit alpha
           gi|20068363|emb|CAC88076.1| RNA polymerase alpha subunit
           [Atropa belladonna]
          Length = 337

 Score =  394 bits (1012), Expect = e-107
 Identities = 191/208 (91%), Positives = 200/208 (96%)
 Frame = -1

Query: 625 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 446
           MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1   MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 445 SITRVKFENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 266
            ITRVKFE VPHEYSTITGIQESVHEI+MNLKEIVLRSNLYGT +AS+CV+GPGYVTAQD
Sbjct: 61  CITRVKFEKVPHEYSTITGIQESVHEIIMNLKEIVLRSNLYGTSEASVCVKGPGYVTAQD 120

Query: 265 MILPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVR 86
           +ILPPYVEI+DNTQHIASLTEPI+ CIGL+IERNRGYLIK P NFQDGSYP+DAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPQNFQDGSYPIDAVFMPVR 180

Query: 85  NVNHSIHSYGNGNEKQEILFPEIWTNGS 2
           N NHSIHSYGNGNEKQEILF EIWTNGS
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGS 208


>ref|YP_008081297.1| RNA polymerase alpha subunit (chloroplast) [Catharanthus roseus]
           gi|474452108|gb|AGI51176.1| RNA polymerase alpha subunit
           (chloroplast) [Catharanthus roseus]
          Length = 335

 Score =  394 bits (1011), Expect = e-107
 Identities = 191/208 (91%), Positives = 199/208 (95%)
 Frame = -1

Query: 625 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 446
           MVREK+TVSTRTLQWKCVESRTD+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1   MVREKITVSTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 445 SITRVKFENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 266
            ITRVKFE VPHEYSTI GIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD
Sbjct: 61  CITRVKFEKVPHEYSTIKGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120

Query: 265 MILPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVR 86
           ++LPPYVEI+DNTQHIASL EPI+LCI L+IERNRGYLIK P NFQDGSYP+DAVFMPVR
Sbjct: 121 IVLPPYVEIVDNTQHIASLMEPIDLCIELQIERNRGYLIKTPQNFQDGSYPIDAVFMPVR 180

Query: 85  NVNHSIHSYGNGNEKQEILFPEIWTNGS 2
           N NHSIHSYGNGNEKQEILF EIWTNGS
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGS 208


>gb|ADD31215.1| RNA polymerase alpha subunit protein [Ilex cornuta]
          Length = 337

 Score =  393 bits (1010), Expect = e-107
 Identities = 191/208 (91%), Positives = 198/208 (95%)
 Frame = -1

Query: 625 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 446
           MVREKVTVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1   MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 445 SITRVKFENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 266
            ITR KFE +PHEYSTI GIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVT QD
Sbjct: 61  CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTTQD 120

Query: 265 MILPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVR 86
           +ILPPYVEI+DNTQHIASLTEPI+LCIGL+IERNRGYLIK P+NFQDGSYP+DAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKTPNNFQDGSYPIDAVFMPVR 180

Query: 85  NVNHSIHSYGNGNEKQEILFPEIWTNGS 2
           N NHSIHSY NGNEKQEILF EIWTNGS
Sbjct: 181 NANHSIHSYRNGNEKQEILFLEIWTNGS 208


>ref|NP_054532.1| RNA polymerase alpha subunit [Nicotiana tabacum]
           gi|78102570|ref|YP_358710.1| RNA polymerase alpha
           subunit [Nicotiana sylvestris]
           gi|133409|sp|P06269.1|RPOA_TOBAC RecName:
           Full=DNA-directed RNA polymerase subunit alpha;
           Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit alpha; Short=RNA polymerase subunit alpha
           gi|90110850|sp|Q3C1M3.1|RPOA_NICSY RecName:
           Full=DNA-directed RNA polymerase subunit alpha;
           Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit alpha; Short=RNA polymerase subunit alpha
           gi|11860|emb|CAA77376.1| RNA polymerase alpha subunit
           [Nicotiana tabacum] gi|10442805|gb|AAG15578.1| RNA
           polymerase alpha subunit [synthetic construct]
           gi|77799597|dbj|BAE46686.1| RNA polymerase alpha subunit
           [Nicotiana sylvestris] gi|225228|prf||1211235BK RNA
           polymerase alpha
          Length = 337

 Score =  393 bits (1009), Expect = e-107
 Identities = 192/208 (92%), Positives = 199/208 (95%)
 Frame = -1

Query: 625 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 446
           MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1   MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 445 SITRVKFENVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 266
            ITRVK E VPHEYSTITGIQESVHEILMNLKEI+LRSNLYGT DASICV+GPG VTAQD
Sbjct: 61  CITRVKSEKVPHEYSTITGIQESVHEILMNLKEIILRSNLYGTSDASICVKGPGSVTAQD 120

Query: 265 MILPPYVEIIDNTQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVR 86
           +ILPPYVEI+DNTQHIASLTEPI+ CIGL+IERNRGYLIK PHNFQDGSYP+DAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVR 180

Query: 85  NVNHSIHSYGNGNEKQEILFPEIWTNGS 2
           N NHSIHSYGNGNEKQEILF EIWTNGS
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGS 208