BLASTX nr result
ID: Rehmannia26_contig00033509
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia26_contig00033509
(506 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004296004.1| PREDICTED: putative ribonuclease H protein A... 68 1e-09
ref|XP_004309110.1| PREDICTED: putative ribonuclease H protein A... 55 3e-08
ref|XP_006582462.1| PREDICTED: putative ribonuclease H protein A... 61 2e-07
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas... 47 9e-07
ref|XP_003605828.1| hypothetical protein MTR_4g043320 [Medicago ... 55 1e-05
ref|XP_004295654.1| PREDICTED: uncharacterized protein LOC101314... 49 1e-05
>ref|XP_004296004.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 751
Score = 68.2 bits (165), Expect = 1e-09
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Frame = +2
Query: 137 EDSHWIPRGNSIVLFWLDNWLGYTIADRIGIPQEYMHLFRHRISDYYYDGS*HFTFSFIE 316
E S WI + +LFW D WL +I ++ + HL R++D+ +D F
Sbjct: 361 EHSRWIIGDGNSILFWSDKWLHSSIIQQLNMGS-LSHLLNSRVADFIWDQQWALPSHFSN 419
Query: 317 TYLDLVQDIVRVPI--TPALKDTRAWLHSEDGIITSKSAYSYLRPHSPVVQWGSWIWSPH 490
+ D + I+ +P+ TP D W HS GI + Y +RP+ + W S +W
Sbjct: 420 LFPDCAKQILEIPLPNTPE-SDILIWEHSSSGIFSFSDGYELVRPYFEKLDWASSVWHSF 478
Query: 491 IP 496
IP
Sbjct: 479 IP 480
>ref|XP_004309110.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 872
Score = 54.7 bits (130), Expect(2) = 3e-08
Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 3/121 (2%)
Frame = +2
Query: 140 DSHWIPRGNSIVLFWLDNWLGYTIADRIGIPQEYMHLFRHRISDYYYDGS*HFTFSFIET 319
++ W+ + FW DN+LG + + G ++ +SDY +GS ++
Sbjct: 418 NTRWLVGTGDKISFWRDNFLGRPLIEFFG-NHGALNDNSSLVSDYIDNGSWVLP-PLLQL 475
Query: 320 YLDLVQDIV-RVPIT--PALKDTRAWLHSEDGIITSKSAYSYLRPHSPVVQWGSWIWSPH 490
L V +++ +VPI+ P+++D W S G +T+K A+ +L+ SPVV WG +WS
Sbjct: 476 NLSAVCNLICQVPISINPSMEDKLIWQASSTGELTAKQAFLFLQQASPVVPWGKPLWSKF 535
Query: 491 I 493
I
Sbjct: 536 I 536
Score = 28.9 bits (63), Expect(2) = 3e-08
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +3
Query: 6 WKIMTSNSLVYNTLRKYFLTSDGSPRRSFIPSYIWCGIRPGIFW 137
W+I TS+ +R F S RRS+ PS IW G+R FW
Sbjct: 376 WEIFTSSFEGCCFIRNRF-----SKRRSYAPSSIWPGVRK--FW 412
>ref|XP_006582462.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Glycine
max]
Length = 779
Score = 60.8 bits (146), Expect = 2e-07
Identities = 44/135 (32%), Positives = 65/135 (48%), Gaps = 9/135 (6%)
Frame = +2
Query: 122 ARDFLEDSHWIPRGNSIVLFWLDNWL--GYTIADRIGIPQEYMHLFRHRISDYYYDGS*H 295
A DFL+D +I G V W WL GY + + + + HL R+ D + +GS
Sbjct: 510 ATDFLKDGFFIRIGRGDVSLWYGKWLLEGYLCSKVLYVNYQDTHL---RVKDLWNNGS-- 564
Query: 296 FTFSFIETYL--DLVQDIVRVPITPALKDTRAWLHSEDGIITSKSAYSYLRP-----HSP 454
+ FS + T L D+ Q I + I + D W S DGI ++ S Y +L +
Sbjct: 565 WNFSMLATILPNDMKQHIRSIRINDIVDDIIIWAPSADGIYSASSVYKWLTSTPSTIDTS 624
Query: 455 VVQWGSWIWSPHIPE 499
V W +W+WS +IPE
Sbjct: 625 EVSW-TWLWSLNIPE 638
>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
Endonuclease/exonuclease/phosphatase [Medicago
truncatula]
Length = 1246
Score = 47.4 bits (111), Expect(2) = 9e-07
Identities = 30/113 (26%), Positives = 50/113 (44%)
Frame = +2
Query: 104 HLVRDSARDFLEDSHWIPRGNSIVLFWLDNWLGYTIADRIGIPQEYMHLFRHRISDYYYD 283
H V++ ++ WI + W +NWLG + I + F ++S+ +
Sbjct: 842 HGVKNHMSILRQNKLWIVGTGDRINLWTNNWLGEPLVTLFNIDPFFHASFTGKVSEVIVN 901
Query: 284 GS*HFTFSFIETYLDLVQDIVRVPITPALKDTRAWLHSEDGIITSKSAYSYLR 442
G+ S + + + +P T L D+ W HS DG +TSK A S+LR
Sbjct: 902 GNWDLPASLLVPEVTSRLASITLPRTE-LPDSLVWTHSADGQLTSKHAVSFLR 953
Score = 30.8 bits (68), Expect(2) = 9e-07
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 6 WKIMTSNSLVYNTLRKYFLTSDGSPRRSFIPSYIWCGIR 122
W +++SNS L++ F S G P R F+ S +W G++
Sbjct: 808 WNLLSSNSQWAVLLKRRFF-SQGQPIRYFVKSSVWHGVK 845
>ref|XP_003605828.1| hypothetical protein MTR_4g043320 [Medicago truncatula]
gi|357471097|ref|XP_003605833.1| hypothetical protein
MTR_4g043480 [Medicago truncatula]
gi|355506883|gb|AES88025.1| hypothetical protein
MTR_4g043320 [Medicago truncatula]
gi|355506888|gb|AES88030.1| hypothetical protein
MTR_4g043480 [Medicago truncatula]
Length = 146
Score = 55.1 bits (131), Expect = 1e-05
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 2/109 (1%)
Frame = +2
Query: 152 IPRGNSIVLFWLDNWLGYTIADRIGIPQEYMHLFRHRISDYYYDGS*HFTFSFIE--TYL 325
I G+ I L WL+NW+G ++ + +P ++ +G S + T
Sbjct: 35 IGTGDKINL-WLNNWMGSSLVSTLNVPPIMYPSLTAKLQTITVNGKWQLLPSLLNFPTVA 93
Query: 326 DLVQDIVRVPITPALKDTRAWLHSEDGIITSKSAYSYLRPHSPVVQWGS 472
+ +Q I +P+TP L D R W+H+ DG +T+K A+ +L S ++ W S
Sbjct: 94 ENIQKIT-LPVTP-LPDRRVWIHALDGTLTTKLAFQFLYTSSDIIDWAS 140
>ref|XP_004295654.1| PREDICTED: uncharacterized protein LOC101314263 [Fragaria vesca
subsp. vesca]
Length = 839
Score = 49.3 bits (116), Expect(2) = 1e-05
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Frame = +2
Query: 128 DFLEDSHWIPRGNSIVLFWLDNWLGYTIADRIGIPQEYMHLFRHRISDYYYDGS*HFTFS 307
D L +S W+ + FW NWL +I D++GI + ++SD+ +GS + +
Sbjct: 507 DILYNSKWVVGNGHSIDFWHGNWLNGSIIDKLGIVHQLGKSLCGKVSDFILNGSWLCSTN 566
Query: 308 FIETYLDLVQDIVRVPI-TPALKDTRAWLHSEDGIITSKSAYSYLRPHSPVVQWGSW 475
L +I+ + + + + D WL S +G ++ AY + V W W
Sbjct: 567 LNAELAALWSEILAIQLPSYDIDDKLVWLDSLEGSLSLSIAYEFKISKQASVPWDRW 623
Score = 25.4 bits (54), Expect(2) = 1e-05
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = +3
Query: 6 WKIMTSNSLVYNTLRKYFLTSDGSPRRSFIPSYIWCGIRP 125
W +T ++ FL G P + S IW G+RP
Sbjct: 464 WDFLTKSTTAAAFFSARFLQRSGQPCSYYKRSSIWPGMRP 503