BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia26_contig00033201
         (596 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006467327.1| PREDICTED: uncharacterized protein LOC102625...   138   1e-31
ref|XP_006470496.1| PREDICTED: uncharacterized protein LOC102617...   126   6e-30
ref|XP_006476142.1| PREDICTED: uncharacterized protein LOC102616...   126   9e-29
ref|XP_006469773.1| PREDICTED: uncharacterized protein LOC102616...   122   4e-26
ref|XP_006480463.1| PREDICTED: putative ribonuclease H protein A...   111   2e-22
ref|XP_002518871.1| conserved hypothetical protein [Ricinus comm...   105   5e-22
ref|XP_003635424.1| PREDICTED: LOW QUALITY PROTEIN: putative rib...    97   2e-18
ref|XP_003612608.1| Replication protein A 70 kDa DNA-binding sub...    97   3e-18
ref|XP_003629388.1| Cytochrome P450 [Medicago truncatula] gi|355...    96   1e-17
gb|ABN08723.1| Polynucleotidyl transferase, Ribonuclease H fold ...    96   1e-17
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam...    95   1e-17
ref|XP_006491472.1| PREDICTED: uncharacterized protein LOC102626...    84   2e-16
ref|XP_006483194.1| PREDICTED: putative ribonuclease H protein A...    84   2e-16
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta...    83   5e-16
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta...    83   5e-16
ref|NP_187562.1| RNase H domain-containing protein [Arabidopsis ...    83   5e-16
gb|ABD28710.1| Polynucleotidyl transferase, Ribonuclease H fold ...    89   1e-15
ref|XP_006482369.1| PREDICTED: putative ribonuclease H protein A...    86   1e-15
ref|XP_006485451.1| PREDICTED: uncharacterized protein LOC102622...    84   2e-15
ref|XP_006480206.1| PREDICTED: uncharacterized protein LOC102628...    87   3e-15

>ref|XP_006467327.1| PREDICTED: uncharacterized protein LOC102625297 [Citrus sinensis]
          Length = 412

 Score =  138 bits (347), Expect(2) = 1e-31
 Identities = 69/169 (40%), Positives = 99/169 (58%), Gaps = 2/169 (1%)
 Frame = -1

Query: 503 IPAKARNLVWRACRNSLPTKERLLSRIVEVSPLCPVCNNGVETVSHIFFSCSFAQSCWNL 324
           +P K +N +WRA  N LPT   L+S+ V+V  +C VCN   ETV H   +CSFA+SCW  
Sbjct: 178 VPNKVKNFIWRAAHNVLPTALNLISKRVDVPAMCSVCNAYEETVLHSLVACSFAKSCWTS 237

Query: 323 SSINSAIYENNSFLSCLTEFWSNKSPEDKCMGAMILWALWHNRNDIVWSQCSRSAGQVLN 144
           SS+    Y +N FL  L   ++  S ++     MI W +W NRN+ VW+  + S  Q+LN
Sbjct: 238 SSVGFVGYCSN-FLDWLAHVFTRCSKDECNTAMMICWRIWVNRNNKVWNNTTSSVCQILN 296

Query: 143 YASTHLFQWEVA--QVSEVANWSINQPDGTMAWQKPIQGWLKCNIDAVV 3
            A   L+QW+ A  QV +V + +     G + W++P  GW+KCN+DA V
Sbjct: 297 SAGQFLYQWQAAKQQVFDVNDDTHRLVHGALCWEQPKFGWVKCNVDAAV 345



 Score = 24.6 bits (52), Expect(2) = 1e-31
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 595 DKWMWIGN*KGIYTVKSGY 539
           D W W+ + +G Y+V+S Y
Sbjct: 137 DVWYWMADSRGCYSVRSCY 155


>ref|XP_006470496.1| PREDICTED: uncharacterized protein LOC102617255 [Citrus sinensis]
          Length = 440

 Score =  126 bits (317), Expect(2) = 6e-30
 Identities = 62/171 (36%), Positives = 95/171 (55%), Gaps = 4/171 (2%)
 Frame = -1

Query: 503 IPAKARNLVWRACRNSLPTKERLLSRIVEVSPLCPVCNNGVETVSHIFFSCSFAQSCWNL 324
           +P+K ++ +WRA  + LPT E LL + VEV P C  C+   E++ HI   C FA++CW  
Sbjct: 131 VPSKVKHFMWRALTDVLPTTENLLKKYVEVPPACITCHASSESICHILLQCPFARTCWMT 190

Query: 323 SSINSAIYENNSFLSCLTEFWSNKSPEDKCMGAMILWALWHNRNDIVWSQCSRSAGQVLN 144
           SSI     + ++ L  L   ++  S E   +  MI W+LW NRND+VW   +    Q+LN
Sbjct: 191 SSI-GFFGDGSNLLLWLEALFNRYSLEQTQLAVMICWSLWQNRNDMVWRGKTSGVQQLLN 249

Query: 143 YASTHLFQWEVAQVSEVANWSINQPD----GTMAWQKPIQGWLKCNIDAVV 3
            A   LFQW++ +  +   +  +QP     G + W+ P+ G LKCN+D  +
Sbjct: 250 SAGHFLFQWQLVRKQQ---FLFSQPSPIGHGAICWEPPVAGRLKCNVDVAL 297



 Score = 30.4 bits (67), Expect(2) = 6e-30
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 595 DKWMWIGN*KGIYTVKSGYYRLS 527
           D W W+   KG+YTV+S Y  L+
Sbjct: 90  DSWYWMHEAKGVYTVRSSYKMLA 112


>ref|XP_006476142.1| PREDICTED: uncharacterized protein LOC102616098 [Citrus sinensis]
          Length = 510

 Score =  126 bits (316), Expect(2) = 9e-29
 Identities = 65/166 (39%), Positives = 91/166 (54%), Gaps = 1/166 (0%)
 Frame = -1

Query: 503 IPAKARNLVWRACRNSLPTKERLLSRIVEVSPLCPVCNNGVETVSHIFFSCSFAQSCWNL 324
           +PAK ++ +W A  N LPT + L    VEV  +CP+CN   E V+H   +CSFA+SCW L
Sbjct: 204 VPAKVKHFIWCAVVNVLPTADNLRRCQVEVPSVCPICNAYDEIVAHCLVNCSFAKSCWLL 263

Query: 323 SSINSAIYENNSFLSCLTEFWSNKSPEDKCMGAMILWALWHNRNDIVWSQCSRSAGQVLN 144
           S I   +    +F+  L   +S  S +D  + AM  W+LW N+N  VW         VLN
Sbjct: 264 SPI-GYVGGCENFMDWLEGIFSRYSSDDCDLAAMTCWSLWENKNAKVWKNRKGRLSSVLN 322

Query: 143 YASTHLFQWE-VAQVSEVANWSINQPDGTMAWQKPIQGWLKCNIDA 9
            A   LFQW+ V ++    N S++   G + WQ+P   W KCN+DA
Sbjct: 323 LAGQVLFQWKSVRKLQVFDNNSVSSSHGAVCWQRPCVWWFKCNVDA 368



 Score = 26.9 bits (58), Expect(2) = 9e-29
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 595 DKWMWIGN*KGIYTVKSGY 539
           D W W  N +G++TV+S Y
Sbjct: 163 DAWYWSANSRGLFTVRSCY 181


>ref|XP_006469773.1| PREDICTED: uncharacterized protein LOC102616843 [Citrus sinensis]
          Length = 977

 Score =  122 bits (306), Expect(2) = 4e-26
 Identities = 64/166 (38%), Positives = 94/166 (56%), Gaps = 2/166 (1%)
 Frame = -1

Query: 494  KARNLVWRACRNSLPTKERLLSRIVEVSPLCPVCNNGVETVSHIFFSCSFAQSCWNLSSI 315
            K +N VWRA  N LPT   L+S+ V + P C VC    ET  H    C+ A++CW  SS+
Sbjct: 810  KVKNFVWRAATNVLPTAVNLISKRVNIPPTCAVCLASDETALHSLVECNVAKACWISSSV 869

Query: 314  NSAIYENNSFLSCLTEFWSNKSPEDKCMGAMILWALWHNRNDIVWSQCSRSAGQVLNYAS 135
               +    SFL  L   ++  S E+  +  MI W +W NRND VW+  + S  QVLN A 
Sbjct: 870  -GFVGHCYSFLEWLDHIFTRCSKEECHVAMMICWRVWINRNDKVWNNKTGSVNQVLNSAG 928

Query: 134  THLFQWEVAQVSE-VANWSINQ-PDGTMAWQKPIQGWLKCNIDAVV 3
              L+QW+VA+  +  A+  +++   G + W++P  GW+KCN+DA +
Sbjct: 929  QLLYQWQVAKKQQFYADADVHKLVYGAICWERPKFGWVKCNVDAAM 974



 Score = 21.9 bits (45), Expect(2) = 4e-26
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 595 DKWMWIGN*KGIYTVKSGY 539
           D W W+ +  G Y+V+S Y
Sbjct: 766 DVWYWLVDSCGCYSVRSCY 784


>ref|XP_006480463.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
           sinensis]
          Length = 459

 Score =  111 bits (277), Expect = 2e-22
 Identities = 68/192 (35%), Positives = 92/192 (47%), Gaps = 1/192 (0%)
 Frame = -1

Query: 575 ELEGDIYSKIGLL*AQC*PKFSI*IPAKARNLVWRACRNSLPTKERLLSRIVEVSPLCPV 396
           ++ GD++ KI          + + +PAK RN VWRA  N LPT   L S+ V ++ LC V
Sbjct: 164 DVAGDMWRKI----------WKLEVPAKVRNFVWRAASNVLPTAVNLRSKHVSLNDLCLV 213

Query: 395 CNNGVETVSHIFFSCSFAQSCWNLSSIN-SAIYENNSFLSCLTEFWSNKSPEDKCMGAMI 219
            N   ETV H+   C FA+SCW  S +    IY  +SF   L   + N + E   +  M+
Sbjct: 214 GNFDKETVLHLLVDCPFARSCWIKSKVGFFGIY--SSFKDWLQALFRNCTNEQCWIAVMV 271

Query: 218 LWALWHNRNDIVWSQCSRSAGQVLNYASTHLFQWEVAQVSEVANWSINQPDGTMAWQKPI 39
            W LW NRN++VW     +  Q++N A                        G +AW  P 
Sbjct: 272 CWKLWCNRNNLVWQGKCDTTKQIVNAAGV----------------------GAVAWSPPR 309

Query: 38  QGWLKCNIDAVV 3
            GWLKCNIDA V
Sbjct: 310 VGWLKCNIDATV 321


>ref|XP_002518871.1| conserved hypothetical protein [Ricinus communis]
           gi|223541858|gb|EEF43404.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 668

 Score =  105 bits (263), Expect(2) = 5e-22
 Identities = 57/169 (33%), Positives = 86/169 (50%), Gaps = 2/169 (1%)
 Frame = -1

Query: 503 IPAKARNLVWRACRNSLPTKERLLSRIVEVSPLCPVCNNGVETVSHIFFSCSFAQSCWNL 324
           IP K RNL+W+ C N + T   L  R V++ PLC  CN   ET+ H+ F CS A+ CW+L
Sbjct: 436 IPTKVRNLMWKICSNCIRTAMNLRMRYVDLDPLCKWCNREPETLFHVLFGCSMARECWDL 495

Query: 323 SSINSAIYENNSFLSCLTEFWSNKSPEDKCMGAMILWALWHNRNDIVWSQCSRSAGQVLN 144
                +    +   S +  F+ +   +     A++  +LW+ RN  VW++ S +   V++
Sbjct: 496 LGFRFSFPTESPICSWIQNFFIDNHEDTCAKMALVCGSLWNQRNHWVWNKQSNTTYGVIS 555

Query: 143 YASTHLFQWEVAQVS--EVANWSINQPDGTMAWQKPIQGWLKCNIDAVV 3
            A+  L Q   AQ +  E+A    +  D T  W KP  GWLK N D  +
Sbjct: 556 PANQLLEQRTRAQSADEEIAPPLGHNTDVTRKWTKPELGWLKINTDTAL 604



 Score = 24.6 bits (52), Expect(2) = 5e-22
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 595 DKWMWIGN*KGIYTVKSGYYRLSAN 521
           D W W+ + KG Y VK+ Y  L  +
Sbjct: 395 DSWYWLFDDKGNYLVKNCYRLLQGD 419


>ref|XP_003635424.1| PREDICTED: LOW QUALITY PROTEIN: putative ribonuclease H protein
            At1g65750-like [Vitis vinifera]
          Length = 820

 Score = 97.1 bits (240), Expect(2) = 2e-18
 Identities = 53/166 (31%), Positives = 75/166 (45%)
 Frame = -1

Query: 500  PAKARNLVWRACRNSLPTKERLLSRIVEVSPLCPVCNNGVETVSHIFFSCSFAQSCWNLS 321
            P K  N  WRA RN LPT+  L  R V+    CP+C + +ET  H    C  A+  W+ S
Sbjct: 517  PPKILNFAWRAARNCLPTRFALTIRHVDTPMCCPICRSELETTLHALVECVAARDVWDES 576

Query: 320  SINSAIYENNSFLSCLTEFWSNKSPEDKCMGAMILWALWHNRNDIVWSQCSRSAGQVLNY 141
             +        SF+  L   ++            + W LW  RND+VW+     + QV+N 
Sbjct: 577  GLAMLQGNFGSFVDWLATMFAYCDFVVFAKYLAVCWGLWWRRNDVVWNGRIWHSQQVVNG 636

Query: 140  ASTHLFQWEVAQVSEVANWSINQPDGTMAWQKPIQGWLKCNIDAVV 3
              T L  W     +E    ++  P  +  WQKP  GW+K N+D  V
Sbjct: 637  CFTMLESW--FHANETLATAVTVPSYSSKWQKPDYGWIKINVDGAV 680



 Score = 21.2 bits (43), Expect(2) = 2e-18
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 595 DKWMWIGN*KGIYTVKSGYYRLSANQNS 512
           D+  W  + +G YT +SGY  L   + S
Sbjct: 467 DQISWSFDARGEYTARSGYGALRCFRQS 494


>ref|XP_003612608.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
            truncatula] gi|355513943|gb|AES95566.1| Replication
            protein A 70 kDa DNA-binding subunit [Medicago
            truncatula]
          Length = 1723

 Score = 97.4 bits (241), Expect = 3e-18
 Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 4/169 (2%)
 Frame = -1

Query: 503  IPAKARNLVWRACRNSLPTKERLLSRIVEVSPLCPVCNNGVETVSHIFFSCSFAQSCWNL 324
            +P K +  +WR+CRN+LPT+ RL  R V  +  C +C N  E   H+FF C+ ++ CW  
Sbjct: 1425 VPPKVKTFLWRSCRNALPTRVRLQDRGVNCTKTCALCENEDEDSMHLFFYCTKSRQCWQQ 1484

Query: 323  SSINSAIYE----NNSFLSCLTEFWSNKSPEDKCMGAMILWALWHNRNDIVWSQCSRSAG 156
              + S + +    N SF   + E         + + A ++W++W  RND +W     +  
Sbjct: 1485 LGLWSKVQQKAQLNLSFGVTMFEILQELDSSQRVIWACVMWSIWKQRNDCIWRNEVMTTA 1544

Query: 155  QVLNYASTHLFQWEVAQVSEVANWSINQPDGTMAWQKPIQGWLKCNIDA 9
             V +     L  W+ AQ                 W+KP +G  KCN+DA
Sbjct: 1545 AVRDRGLNLLTGWQNAQ---------------DIWRKPDEGHFKCNVDA 1578


>ref|XP_003629388.1| Cytochrome P450 [Medicago truncatula] gi|355523410|gb|AET03864.1|
           Cytochrome P450 [Medicago truncatula]
          Length = 687

 Score = 95.5 bits (236), Expect = 1e-17
 Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 4/169 (2%)
 Frame = -1

Query: 503 IPAKARNLVWRACRNSLPTKERLLSRIVEVSPLCPVCNNGVETVSHIFFSCSFAQSCW-- 330
           +P K +N +WRACRN LPT+ RL S+ V+    C VC++  E  +H+FF CS +   W  
Sbjct: 374 LPPKVKNFLWRACRNCLPTRIRLQSKGVQCIDRCAVCDDFGEDSNHLFFMCSKSMLYWQR 433

Query: 329 -NLSSINSAIYE-NNSFLSCLTEFWSNKSPEDKCMGAMILWALWHNRNDIVWSQCSRSAG 156
             L S   A+++ N SF + +     +   + K + ++ LW++W +RN+ VW+  + +A 
Sbjct: 434 IGLWSPLMAVFDINVSFPTNVFAILQHLDQQQKQIFSVTLWSIWKHRNNKVWNNITDTAQ 493

Query: 155 QVLNYASTHLFQWEVAQVSEVANWSINQPDGTMAWQKPIQGWLKCNIDA 9
            +   A + L  W  AQ     +         + W KP  G   CN+DA
Sbjct: 494 DICARAGSLLTSWRNAQNIRHPSPQNPSTPNDLKWVKPSPGRFTCNVDA 542


>gb|ABN08723.1| Polynucleotidyl transferase, Ribonuclease H fold [Medicago
           truncatula]
          Length = 355

 Score = 95.5 bits (236), Expect = 1e-17
 Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 4/171 (2%)
 Frame = -1

Query: 503 IPAKARNLVWRACRNSLPTKERLLSRIVEVSPLCPVCNNGVETVSHIFFSCSFAQSCWNL 324
           IP + R  +WR   N LPT+  L +R ++    C +  N  E  +H+FF C+ A  CW  
Sbjct: 123 IPHRVRAFLWRLAHNCLPTRVNLNARGIQCEESCVMFENFAECHTHLFFVCAKAMDCWKN 182

Query: 323 SSINSAIYE----NNSFLSCLTEFWSNKSPEDKCMGAMILWALWHNRNDIVWSQCSRSAG 156
             ++  + E     N+F + L +F      + +    M+LW+LW +RN  +W     +  
Sbjct: 183 IGLHVVLSELLPLANNFTTLLFDFMHRLCSQQQQAAGMLLWSLWKSRNIKLWDSTDTTTA 242

Query: 155 QVLNYASTHLFQWEVAQVSEVANWSINQPDGTMAWQKPIQGWLKCNIDAVV 3
             ++ A   L +W   Q ++     IN P+  ++W KP  G +KCN+DA +
Sbjct: 243 ITISRAKDTLHEWSCMQSAKTQ--PIN-PNHHISWVKPTGGMIKCNMDAAI 290


>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
            42.57) [Arabidopsis thaliana]
          Length = 1662

 Score = 95.1 bits (235), Expect = 1e-17
 Identities = 51/173 (29%), Positives = 91/173 (52%), Gaps = 11/173 (6%)
 Frame = -1

Query: 494  KARNLVWRACRNSLPTKERLLSRIVEVSPLCPVCNNGVETVSHIFFSCSFAQSCWNLS-- 321
            K + ++WR    +LPT+ RLL+R +++ P CP C    ET++H+ F+C +A S W LS  
Sbjct: 1370 KIKYMLWRTISKALPTRSRLLTRGMDIDPHCPRCPTEEETINHVLFTCPYAASIWGLSNF 1429

Query: 320  ------SINSAIYENNSFLSCLTEFWSNK-SPEDKCMGAMILWALWHNRNDIVWSQCSRS 162
                  + +    EN SFL  +  F +N  + E +     ++W LW  RN++V+++ S S
Sbjct: 1430 PWLPGHTFSQDTEENISFL--INSFSNNTLNTEQRLAPFWLIWRLWKARNNLVFNKFSES 1487

Query: 161  AGQVLNYASTHLFQW--EVAQVSEVANWSINQPDGTMAWQKPIQGWLKCNIDA 9
              +V+      + +W   V +  + +  + +     + W+KP+   +KCN DA
Sbjct: 1488 CSRVVTQTEAEVNEWLQSVNRREDASVLTRSSHRANVRWKKPVFPLVKCNFDA 1540


>ref|XP_006491472.1| PREDICTED: uncharacterized protein LOC102626455 [Citrus sinensis]
          Length = 1452

 Score = 84.0 bits (206), Expect(2) = 2e-16
 Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 2/169 (1%)
 Frame = -1

Query: 503  IPAKARNLVWRACRNSLPTKERLLSRIVEVSPLCPVCNNGVETVSHIFFSCSFAQSCWNL 324
            +P K +  +WRA +N LPT E L  R     P+C  C   VETVSH+   C  A+  W+L
Sbjct: 1141 LPEKVKIFMWRALKNILPTAENLWKRRSLQEPICQRCKLQVETVSHVLIECKAARKIWDL 1200

Query: 323  SS--INSAIYENNSFLSCLTEFWSNKSPEDKCMGAMILWALWHNRNDIVWSQCSRSAGQV 150
            +   +  +   N  F S + E WS  S  +  +  +  W +W  RN  ++      +  +
Sbjct: 1201 APLIVQPSKDHNQDFFSAIQEMWSRSSTAEAELMIVYCWVIWSARNKFIFEGKKSDSRFL 1260

Query: 149  LNYASTHLFQWEVAQVSEVANWSINQPDGTMAWQKPIQGWLKCNIDAVV 3
               A + L  ++        + + ++      W+ P Q  LK N+DA V
Sbjct: 1261 AAKADSVLKAYQRVSKPGNVHGAKDRGIDQQKWKPPSQNVLKLNVDAAV 1309



 Score = 27.7 bits (60), Expect(2) = 2e-16
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = -2

Query: 595  DKWMWIGN*KGIYTVKSGYYRLSANQN 515
            D+ +W  + KG Y+VKSG Y+L+ NQN
Sbjct: 1093 DEVLWHFDKKGEYSVKSG-YQLALNQN 1118


>ref|XP_006483194.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
           sinensis]
          Length = 765

 Score = 84.0 bits (206), Expect(2) = 2e-16
 Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 2/169 (1%)
 Frame = -1

Query: 503 IPAKARNLVWRACRNSLPTKERLLSRIVEVSPLCPVCNNGVETVSHIFFSCSFAQSCWNL 324
           +P K +  +WRA +N LPT E L  R     P+C  C   VETVSH+   C  A+  W+L
Sbjct: 454 LPEKVKIFMWRALKNILPTAENLWKRRSLQEPICQRCKLQVETVSHVLIECKAARKIWDL 513

Query: 323 SS--INSAIYENNSFLSCLTEFWSNKSPEDKCMGAMILWALWHNRNDIVWSQCSRSAGQV 150
           +   +  +   N  F S + E WS  S  +  +  +  W +W  RN  ++      +  +
Sbjct: 514 APLIVQPSKDHNQDFFSAIQEMWSRSSTAEAELMIVYCWVIWSARNKFIFEGKKSDSRFL 573

Query: 149 LNYASTHLFQWEVAQVSEVANWSINQPDGTMAWQKPIQGWLKCNIDAVV 3
              A + L  ++        + + ++      W+ P Q  LK N+DA V
Sbjct: 574 AAKADSVLKAYQRVSKPGNVHGAKDRGIDQQKWKPPSQNVLKLNVDAAV 622



 Score = 27.7 bits (60), Expect(2) = 2e-16
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = -2

Query: 595 DKWMWIGN*KGIYTVKSGYYRLSANQN 515
           D+ +W  + KG Y+VKSG Y+L+ NQN
Sbjct: 406 DEVLWHFDKKGEYSVKSG-YQLALNQN 431


>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1750

 Score = 83.2 bits (204), Expect(2) = 5e-16
 Identities = 50/176 (28%), Positives = 86/176 (48%), Gaps = 11/176 (6%)
 Frame = -1

Query: 503  IPAKARNLVWRACRNSLPTKERLLSRIVEVSPLCPVCNNGVETVSHIFFSCSFAQSCWNL 324
            I  K ++ +WRA   +L T ERL +R + + P CP C+   E+++H  F+C FA   W L
Sbjct: 1433 IMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRL 1492

Query: 323  SSINSAIYEN----NSF---LSCLTEFWSNKSPED--KCMGAMILWALWHNRNDIVWSQC 171
            S  +S++  N    N F   +S +  F  + +  D  K +   ++W +W  RN++V+++ 
Sbjct: 1493 S--DSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVVFNKF 1550

Query: 170  SRSAGQVLNYASTHLFQWEVAQVSEVANWSINQ--PDGTMAWQKPIQGWLKCNIDA 9
              S  + +  A      W  A  S     S  +   +  + W+ P   ++KCN DA
Sbjct: 1551 RESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKCNFDA 1606



 Score = 26.9 bits (58), Expect(2) = 5e-16
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 595  DKWMWIGN*KGIYTVKSGYYRLS 527
            DK +W  N  G YTV+SGY+ L+
Sbjct: 1383 DKIIWNYNTTGEYTVRSGYWLLT 1405


>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1524

 Score = 83.2 bits (204), Expect(2) = 5e-16
 Identities = 50/176 (28%), Positives = 87/176 (49%), Gaps = 11/176 (6%)
 Frame = -1

Query: 503  IPAKARNLVWRACRNSLPTKERLLSRIVEVSPLCPVCNNGVETVSHIFFSCSFAQSCWNL 324
            I  K ++ +WRA   +L T ERL +R + + P+CP C+   E+++H  F+C FA   W L
Sbjct: 1207 IMPKLKHFLWRALSQALATTERLTTRGMRIDPICPRCHRENESINHALFTCPFATMAWWL 1266

Query: 323  SSINSAIYEN----NSF---LSCLTEFWSNKSPED--KCMGAMILWALWHNRNDIVWSQC 171
            S  +S++  N    N F   +S +  F  + +  D  K +   ++W +W  RN++V+++ 
Sbjct: 1267 S--DSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVVFNKF 1324

Query: 170  SRSAGQVLNYASTHLFQWEVAQVSEVANWSINQ--PDGTMAWQKPIQGWLKCNIDA 9
              S  + +  A      W  A  S     S  +   +  + W+ P   ++KCN DA
Sbjct: 1325 RESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKCNFDA 1380



 Score = 26.9 bits (58), Expect(2) = 5e-16
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 595  DKWMWIGN*KGIYTVKSGYYRLS 527
            DK +W  N  G YTV+SGY+ L+
Sbjct: 1157 DKIIWNYNTTGEYTVRSGYWLLT 1179


>ref|NP_187562.1| RNase H domain-containing protein [Arabidopsis thaliana]
           gi|6682231|gb|AAF23283.1|AC016661_8 putative non-LTR
           reverse transcriptase [Arabidopsis thaliana]
           gi|332641254|gb|AEE74775.1| RNase H domain-containing
           protein [Arabidopsis thaliana]
          Length = 484

 Score = 83.2 bits (204), Expect(2) = 5e-16
 Identities = 50/176 (28%), Positives = 86/176 (48%), Gaps = 11/176 (6%)
 Frame = -1

Query: 503 IPAKARNLVWRACRNSLPTKERLLSRIVEVSPLCPVCNNGVETVSHIFFSCSFAQSCWNL 324
           I  K ++ +WRA   +L T ERL +R + + P CP C+   E+++H  F+C FA   W L
Sbjct: 167 IMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRL 226

Query: 323 SSINSAIYEN----NSF---LSCLTEFWSNKSPED--KCMGAMILWALWHNRNDIVWSQC 171
           S  +S++  N    N F   +S +  F  + +  D  K +   ++W +W  RN++V+++ 
Sbjct: 227 S--DSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVVFNKF 284

Query: 170 SRSAGQVLNYASTHLFQWEVAQVSEVANWSINQ--PDGTMAWQKPIQGWLKCNIDA 9
             S  + +  A      W  A  S     S  +   +  + W+ P   ++KCN DA
Sbjct: 285 RESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKCNFDA 340



 Score = 26.9 bits (58), Expect(2) = 5e-16
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 595 DKWMWIGN*KGIYTVKSGYYRLS 527
           DK +W  N  G YTV+SGY+ L+
Sbjct: 117 DKIIWNYNTTGEYTVRSGYWLLT 139


>gb|ABD28710.1| Polynucleotidyl transferase, Ribonuclease H fold [Medicago
           truncatula]
          Length = 393

 Score = 88.6 bits (218), Expect = 1e-15
 Identities = 53/185 (28%), Positives = 80/185 (43%), Gaps = 20/185 (10%)
 Frame = -1

Query: 503 IPAKARNLVWRACRNSLPTKERLLSRIVEVSPLCPVCNNGVETVSHIFFSCSFAQSCWNL 324
           +P + + LVWR CR   PT+ RL+SR V     C  C +  E   HIFF C  A   WN 
Sbjct: 64  VPPRVKKLVWRVCRECFPTRVRLISRGVNCPSACVKCEDPHEDCYHIFFHCRTAIDVWNT 123

Query: 323 SS----INSAIYENNSFLSCLTEFWSNKSPEDKCMGAMILWALWHNRNDIVWSQCSRSAG 156
           ++    I  ++ + ++    +       S         I+W++W +RN  +W Q S S+ 
Sbjct: 124 ANVWHLIAPSLSQFDNAPDIIFNLLQKLSASQMESIVTIMWSIWKSRNLKLWQQVSESSV 183

Query: 155 QVLNYASTHLFQWEVAQVSEVANWSINQPD----------------GTMAWQKPIQGWLK 24
            +L  A   L  W  A   +     ++ P                 G + W+KP  G LK
Sbjct: 184 TILERAKHLLEGWRKANHKQGLLGQVHSPTNSRPQTHDSQNTDNRYGNIRWRKPKSGRLK 243

Query: 23  CNIDA 9
           CN+DA
Sbjct: 244 CNVDA 248


>ref|XP_006482369.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
           sinensis]
          Length = 494

 Score = 86.3 bits (212), Expect(2) = 1e-15
 Identities = 53/166 (31%), Positives = 73/166 (43%), Gaps = 1/166 (0%)
 Frame = -1

Query: 503 IPAKARNLVWRACRNSLPTKERLLSRIVEVSPLCPVCNNGVETVSHIFFSCSFAQSCWNL 324
           +PAK +  +WRA +N LPT E L  R +     C  C N VE   H   +C  A+  W L
Sbjct: 216 LPAKIKIFIWRAAKNLLPTAENLWKRKIVHEAYCKRCGNRVENTLHALITCKAAKKVWQL 275

Query: 323 SSINSAIYENNSFLSCLTEFWSNK-SPEDKCMGAMILWALWHNRNDIVWSQCSRSAGQVL 147
           S + S+  E  +    L +    K S  D  M   ILW +W++RN +V+          +
Sbjct: 276 SPMASSFQEMGN-PDILGDLGGKKLSRADMEMLMTILWVIWYDRNKLVFEDLKLDPRLSM 334

Query: 146 NYASTHLFQWEVAQVSEVANWSINQPDGTMAWQKPIQGWLKCNIDA 9
             A      +   Q  E+ N    Q      W  P QGWLK N+DA
Sbjct: 335 AKAEAINEAFRRTQFPEITNEGKLQKLKQTVWTPPPQGWLKLNVDA 380



 Score = 22.7 bits (47), Expect(2) = 1e-15
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 595 DKWMWIGN*KGIYTVKSGY 539
           D+ +W  + +G YT+KSGY
Sbjct: 167 DEVIWHYDKRGKYTMKSGY 185


>ref|XP_006485451.1| PREDICTED: uncharacterized protein LOC102622884 [Citrus sinensis]
          Length = 1160

 Score = 83.6 bits (205), Expect(2) = 2e-15
 Identities = 51/171 (29%), Positives = 78/171 (45%), Gaps = 2/171 (1%)
 Frame = -1

Query: 515  FSI*IPAKARNLVWRACRNSLPTKERLLSRIVEVSPLCPVCNNGVETVSHIFFSCSFAQS 336
            +S+ +P K R  VWRA +N LP+ E L  R +   P C +C  G+E V H    C  A+ 
Sbjct: 813  WSLALPKKIRIFVWRAAKNLLPSAENLWKRKIVQEPTCQLCKMGIENVFHALVDCKAAKK 872

Query: 335  CWNLS--SINSAIYENNSFLSCLTEFWSNKSPEDKCMGAMILWALWHNRNDIVWSQCSRS 162
             W LS   I+         LS L      +S  D  + A++LWA W+ RN  ++     +
Sbjct: 873  VWRLSLFYIDIQAAPGQDILSLLHGVKRMRSNADVDLFAVMLWAKWNARNQWLFKGKREN 932

Query: 161  AGQVLNYASTHLFQWEVAQVSEVANWSINQPDGTMAWQKPIQGWLKCNIDA 9
               V+  A   +  ++  Q S   +    Q    + W  P +G++K N DA
Sbjct: 933  PQSVVAKAEAVMEAYKRVQPSADVSHGKQQKVAQLGWNPPQEGFVKINTDA 983



 Score = 24.6 bits (52), Expect(2) = 2e-15
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 595 DKWMWIGN*KGIYTVKSGYYR 533
           D+ +W     G YTVKSGY R
Sbjct: 769 DELIWHFGKSGQYTVKSGYQR 789


>ref|XP_006480206.1| PREDICTED: uncharacterized protein LOC102628543 [Citrus sinensis]
          Length = 163

 Score = 87.4 bits (215), Expect = 3e-15
 Identities = 44/118 (37%), Positives = 68/118 (57%), Gaps = 2/118 (1%)
 Frame = -1

Query: 350 SFAQSCWNLSSINSAIYENNSFLSCLTEFWSNKSPEDKCMGAMILWALWHNRNDIVWSQC 171
           SFA+SCW  SS+    Y  ++FL  L   ++  S ++  +  MI W +W NRN+  W+  
Sbjct: 5   SFAKSCWISSSVGFVGY-CSTFLDWLAHVFTRCSKDECNIAMMICWRIWVNRNNKAWNNT 63

Query: 170 SRSAGQVLNYASTHLFQWEVA--QVSEVANWSINQPDGTMAWQKPIQGWLKCNIDAVV 3
           + S  Q+LN A   L+QW+ A  QV ++ + +     G + W+KP  GW+KCN+DA V
Sbjct: 64  ASSVCQILNSAGQFLYQWQAAKQQVFDINDDTHKLVHGALCWEKPKFGWVKCNVDAAV 121