BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia26_contig00033060
         (632 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN59952.1| hypothetical protein VITISV_006720 [Vitis vinifera]    65   8e-19
emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]    64   2e-18
emb|CAN67546.1| hypothetical protein VITISV_027734 [Vitis vinifera]    67   5e-18
emb|CAN60844.1| hypothetical protein VITISV_005976 [Vitis vinifera]    55   1e-15
gb|ABA95720.1| retrotransposon protein, putative, Ty1-copia subc...    47   2e-15
emb|CAN82452.1| hypothetical protein VITISV_003326 [Vitis vinifera]    63   3e-15
emb|CAN62182.1| hypothetical protein VITISV_044400 [Vitis vinifera]    61   4e-15
emb|CAN71996.1| hypothetical protein VITISV_023485 [Vitis vinifera]    55   1e-14
gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-...    46   2e-14
gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subc...    46   3e-14
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc...    46   9e-14
gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]      45   2e-13
emb|CAN63649.1| hypothetical protein VITISV_037657 [Vitis vinifera]    47   2e-13
gb|AAD22155.1|AF061282_8 polyprotein [Sorghum bicolor]                 49   2e-13
gb|ABA97279.2| retrotransposon protein, putative, Ty1-copia subc...    44   9e-13
gb|AAK02020.2|AC074283_1 Putative gag-pol polyprotein [Oryza sat...    48   4e-12
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]    57   7e-12
emb|CAN66823.1| hypothetical protein VITISV_003499 [Vitis vinifera]    53   2e-11
emb|CAN82769.1| hypothetical protein VITISV_037882 [Vitis vinifera]    64   3e-11
ref|XP_002449872.1| hypothetical protein SORBIDRAFT_05g024695 [S...    45   3e-11

>emb|CAN59952.1| hypothetical protein VITISV_006720 [Vitis vinifera]
          Length = 1365

 Score = 65.5 bits (158), Expect(3) = 8e-19
 Identities = 34/93 (36%), Positives = 53/93 (56%)
 Frame = +3

Query: 354 ELNHTANKCFYRGDLTYGATNNVNTYSQNNDSANLSQSGPDPNLANNSSNMDSNQDTIWF 533
           +  HT   C++R D+T+ +T N  T   N+ ++N       P +  +S+N+    D  W+
Sbjct: 292 KFGHTVQVCYHRFDITFQSTQNNTTGVSNSGNSNSM-----PAMVASSNNL---ADDNWY 343

Query: 534 PDSGATNHVTYDFGNLNLASEYNGGDKVQIGNG 632
            DSGA++H+T +  NL  A+ Y G DKV IGNG
Sbjct: 344 LDSGASHHLTQNVANLTNATPYTGADKVTIGNG 376



 Score = 42.0 bits (97), Expect(3) = 8e-19
 Identities = 20/41 (48%), Positives = 27/41 (65%)
 Frame = +3

Query: 3   ISYIITGLGRDYNSVKVIINSRVEPYSLREVHALLLSFESR 125
           I  ++ GLG DYN+V   IN R +  SL  VH++LL+FE R
Sbjct: 177 IMNLLGGLGSDYNAVVTAINIREDKISLEAVHSMLLAFEQR 217



 Score = 32.3 bits (72), Expect(3) = 8e-19
 Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
 Frame = +2

Query: 179 SVNYINQGSRTGGFNQGNRGSGSNPFFNNRGGRASPRGGMNRGRGRFKHG---RIACQIC 349
           S NY +  +  GG  + N G G N    N   R   RGG     GR       R  CQ+C
Sbjct: 231 SANYASSSNNRGGGRKYNGGRGPNFMMTNSNFRGRGRGGRYGQSGRQNSSSSERPQCQLC 290


>emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]
          Length = 1432

 Score = 63.5 bits (153), Expect(3) = 2e-18
 Identities = 33/93 (35%), Positives = 53/93 (56%)
 Frame = +3

Query: 354 ELNHTANKCFYRGDLTYGATNNVNTYSQNNDSANLSQSGPDPNLANNSSNMDSNQDTIWF 533
           +  HTA  C++R D+++       ++S NN + N       P +  ++SN  +++   W+
Sbjct: 294 KFGHTAQICYHRFDISFQGGQTTISHSLNNGNQNNI-----PAMVASASNNPADES--WY 346

Query: 534 PDSGATNHVTYDFGNLNLASEYNGGDKVQIGNG 632
            DSGA++H+T + GNL   S Y G DKV IGNG
Sbjct: 347 LDSGASHHLTQNLGNLTSTSPYTGTDKVTIGNG 379



 Score = 40.4 bits (93), Expect(3) = 2e-18
 Identities = 18/38 (47%), Positives = 26/38 (68%)
 Frame = +3

Query: 12  IITGLGRDYNSVKVIINSRVEPYSLREVHALLLSFESR 125
           ++ GLG DYN+V   IN R +  SL  +H++LL+FE R
Sbjct: 183 LLGGLGSDYNAVVTAINIRDDKISLEAIHSMLLAFEHR 220



 Score = 34.3 bits (77), Expect(3) = 2e-18
 Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
 Frame = +2

Query: 179 SVNYINQGSRTGG---FNQGNRGSGSNPFFNNRGGRASPRGGMNRGRGRFKHG---RIAC 340
           S NY +  +  GG   FN G RG G +P  NN   R   RGG N   GR       +  C
Sbjct: 231 SANYASSSNNRGGGRKFN-GGRGQGYSPNNNNYTYRGRGRGGRNGQGGRQNSSPSEKPQC 289

Query: 341 QIC 349
           Q+C
Sbjct: 290 QLC 292


>emb|CAN67546.1| hypothetical protein VITISV_027734 [Vitis vinifera]
          Length = 1635

 Score = 67.0 bits (162), Expect(3) = 5e-18
 Identities = 34/93 (36%), Positives = 53/93 (56%)
 Frame = +3

Query: 354 ELNHTANKCFYRGDLTYGATNNVNTYSQNNDSANLSQSGPDPNLANNSSNMDSNQDTIWF 533
           +  HT   C++R D++Y ++ ++NT   N  + N       P +  +S+N+    D  W+
Sbjct: 190 KFGHTVQICYHRFDISYQSSQSINTSPSNAGNPNSI-----PAMVASSNNL---ADDTWY 241

Query: 534 PDSGATNHVTYDFGNLNLASEYNGGDKVQIGNG 632
            DSGA++H+T   GNL  +S Y G DKV IGNG
Sbjct: 242 LDSGASHHLTQSVGNLTSSSPYTGTDKVTIGNG 274



 Score = 40.4 bits (93), Expect(3) = 5e-18
 Identities = 18/38 (47%), Positives = 26/38 (68%)
 Frame = +3

Query: 12  IITGLGRDYNSVKVIINSRVEPYSLREVHALLLSFESR 125
           ++ GLG DYN+V   IN R +  S+  VH++LL+FE R
Sbjct: 76  LLDGLGSDYNAVVTAINIRDDKISIEAVHSMLLAFEHR 113



 Score = 29.6 bits (65), Expect(3) = 5e-18
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
 Frame = +2

Query: 179 SVNYINQGSRTGGFNQGNRGSGSN--PFFNNRGGRASPRGGMNRGRGRFKHG---RIACQ 343
           S NY +  +  GG  + N G G N  P  +N   R   RGG     GR       +  CQ
Sbjct: 127 SANYASSXNSRGGGRRYNGGRGQNHTPNISNYTYRGRGRGGRYGXNGRHNSNSFEKPQCQ 186

Query: 344 IC 349
           +C
Sbjct: 187 LC 188


>emb|CAN60844.1| hypothetical protein VITISV_005976 [Vitis vinifera]
          Length = 1380

 Score = 55.1 bits (131), Expect(3) = 1e-15
 Identities = 31/92 (33%), Positives = 49/92 (53%)
 Frame = +3

Query: 354 ELNHTANKCFYRGDLTYGATNNVNTYSQNNDSANLSQSGPDPNLANNSSNMDSNQDTIWF 533
           +  HTA  C++  D+++       ++S NN + N       P +  ++SN  S  D  W+
Sbjct: 194 KFGHTAQICYHGFDISFQGGQTTISHSLNNGNQNNI-----PAMVASASN--SPADESWY 246

Query: 534 PDSGATNHVTYDFGNLNLASEYNGGDKVQIGN 629
            DSGA++H+T + GNL   S Y G  +V IGN
Sbjct: 247 LDSGASHHLTQNLGNLTSTSPYTGTYRVTIGN 278



 Score = 39.7 bits (91), Expect(3) = 1e-15
 Identities = 17/36 (47%), Positives = 26/36 (72%)
 Frame = +3

Query: 12  IITGLGRDYNSVKVIINSRVEPYSLREVHALLLSFE 119
           ++ GLG DYN+V   IN R +  SL+ +H++LL+FE
Sbjct: 83  LLGGLGSDYNAVVTAINIRDDKISLKAIHSMLLAFE 118



 Score = 34.3 bits (77), Expect(3) = 1e-15
 Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
 Frame = +2

Query: 179 SVNYINQGSRTGG---FNQGNRGSGSNPFFNNRGGRASPRGGMNRGRGRFKHG---RIAC 340
           S NY +  +  GG   FN G RG G +P  NN   R   RGG N   GR       +  C
Sbjct: 131 SANYASSSNNRGGGRKFN-GGRGQGYSPNNNNYTYRGRGRGGRNGQGGRQNSSPSEKPQC 189

Query: 341 QIC 349
           Q+C
Sbjct: 190 QLC 192


>gb|ABA95720.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 358

 Score = 47.0 bits (110), Expect(3) = 2e-15
 Identities = 22/45 (48%), Positives = 31/45 (68%)
 Frame = +3

Query: 3   ISYIITGLGRDYNSVKVIINSRVEPYSLREVHALLLSFESRWKVL 137
           ++YI+ GL  DYNSV   + +R EP S+ E+HA L  FESR ++L
Sbjct: 125 VTYILAGLDFDYNSVVSSVANRAEPISVSELHAQLTGFESRMELL 169



 Score = 46.2 bits (108), Expect(3) = 2e-15
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
 Frame = +3

Query: 354 ELNHTANKCFYRGDLTYGATNNVNTYSQNNDSANLSQSGPDPNLA--NNSSNMDSNQDTI 527
           ++ HT  KC+ R D +Y                    SG + ++A   NS  +D+N    
Sbjct: 228 KIGHTVVKCWKRFDTSY--------------------SGEEKSVAAATNSYGVDTN---- 263

Query: 528 WFPDSGATNHVTYDFGNLNLASEYNGGDKVQIGNG 632
           W+ D+GAT+H+T +   L +  +Y GGD+V   +G
Sbjct: 264 WYIDTGATDHITGELEKLTVRDKYTGGDQVHTASG 298



 Score = 35.0 bits (79), Expect(3) = 2e-15
 Identities = 22/57 (38%), Positives = 26/57 (45%)
 Frame = +2

Query: 179 SVNYINQGSRTGGFNQGNRGSGSNPFFNNRGGRASPRGGMNRGRGRFKHGRIACQIC 349
           S N  ++G R GG   G  G    P   NRG     RGG  RG G+ K     CQ+C
Sbjct: 176 SANSASRGGRGGG---GGGGGHGGPNSGNRGRGGFGRGGGGRGDGKLKP---ICQLC 226


>emb|CAN82452.1| hypothetical protein VITISV_003326 [Vitis vinifera]
          Length = 1139

 Score = 63.2 bits (152), Expect(3) = 3e-15
 Identities = 33/93 (35%), Positives = 51/93 (54%)
 Frame = +3

Query: 354 ELNHTANKCFYRGDLTYGATNNVNTYSQNNDSANLSQSGPDPNLANNSSNMDSNQDTIWF 533
           +  HTA  C++R D+++       ++S NN + N       P +  ++SN  S  D  W+
Sbjct: 265 KFGHTAQICYHRFDISFQGGQTTTSHSLNNGNQNNI-----PTMVASASN--SPADESWY 317

Query: 534 PDSGATNHVTYDFGNLNLASEYNGGDKVQIGNG 632
            DSG ++H+T + GNL   S Y G D+V IGNG
Sbjct: 318 LDSGTSHHLTQNLGNLTSTSLYTGTDRVTIGNG 350



 Score = 36.2 bits (82), Expect(3) = 3e-15
 Identities = 16/36 (44%), Positives = 24/36 (66%)
 Frame = +3

Query: 12  IITGLGRDYNSVKVIINSRVEPYSLREVHALLLSFE 119
           ++ GLG DYN V   IN R +  SL  +H++LL+F+
Sbjct: 154 LLGGLGSDYNVVVTAINIRDDKISLEAIHSMLLAFK 189



 Score = 28.1 bits (61), Expect(3) = 3e-15
 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
 Frame = +2

Query: 179 SVNYINQGSRTGGFNQGNRGSGSNPFFNNRG--GRASPRGGMNRGRGRFKHG---RIACQ 343
           S NY +  +  GG  + N G G     NN     R   RGG N   GR       +  CQ
Sbjct: 202 SANYASFSNNRGGGRKFNGGHGQGYTLNNNNYTYRGRGRGGRNGQGGRQNSSPSEKPQCQ 261

Query: 344 IC 349
           +C
Sbjct: 262 LC 263


>emb|CAN62182.1| hypothetical protein VITISV_044400 [Vitis vinifera]
          Length = 920

 Score = 60.8 bits (146), Expect(3) = 4e-15
 Identities = 33/92 (35%), Positives = 50/92 (54%)
 Frame = +3

Query: 354 ELNHTANKCFYRGDLTYGATNNVNTYSQNNDSANLSQSGPDPNLANNSSNMDSNQDTIWF 533
           +  HTA  C++R D+++       + S NN + N         LA  +S  +S+ D  W+
Sbjct: 144 KFGHTAQICYHRFDISFQGGXTTTSPSLNNGNQNNI-------LAMVASFSNSSADESWY 196

Query: 534 PDSGATNHVTYDFGNLNLASEYNGGDKVQIGN 629
            DSGA++H+T + GNL   S Y G D+V IGN
Sbjct: 197 LDSGASHHLTQNLGNLTSTSPYTGTDRVTIGN 228



 Score = 39.3 bits (90), Expect(3) = 4e-15
 Identities = 18/38 (47%), Positives = 25/38 (65%)
 Frame = +3

Query: 12  IITGLGRDYNSVKVIINSRVEPYSLREVHALLLSFESR 125
           ++ GLG DYN V   IN R +  SL  +H++LL+FE R
Sbjct: 33  LLGGLGSDYNVVVTAINIRDDKISLEAIHSMLLAFEHR 70



 Score = 26.9 bits (58), Expect(3) = 4e-15
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
 Frame = +2

Query: 179 SVNYINQGSRTGG---FNQGNRGSGSNPFFNNRGGRASPRGGMNRGRGRFKHG----RIA 337
           S NY +  +  GG   FN G  G G  P  NN    +   GG N G+GR ++     +  
Sbjct: 81  SANYASSSNNRGGGRKFN-GGCGQGYAPNNNNYTYXSHGXGGRN-GQGRRQNSSPSEKPQ 138

Query: 338 CQIC 349
           CQ+C
Sbjct: 139 CQLC 142


>emb|CAN71996.1| hypothetical protein VITISV_023485 [Vitis vinifera]
          Length = 1087

 Score = 54.7 bits (130), Expect(3) = 1e-14
 Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
 Frame = +3

Query: 354 ELNHTANKCFYRGDLTYGATNNVNTYSQNNDSANLSQSGPDPNL-ANNSSNMDSNQDTIW 530
           +  HTA  C++  D+++     + + S NN + N        N+ A  +S+ +S  D  W
Sbjct: 144 KFGHTAQICYHXFDISFQGGQTITSPSLNNGNQN--------NIXAMVASSSNSPADESW 195

Query: 531 FPDSGATNHVTYDFGNLNLASEYNGGDKVQIGN 629
           + D GA++H+T + GN    S Y G D+V IGN
Sbjct: 196 YLDFGASHHLTQNLGNXTSTSPYTGTDRVTIGN 228



 Score = 37.7 bits (86), Expect(3) = 1e-14
 Identities = 17/36 (47%), Positives = 25/36 (69%)
 Frame = +3

Query: 12  IITGLGRDYNSVKVIINSRVEPYSLREVHALLLSFE 119
           ++ GLG DYN+V   IN R +  SL  +H++LL+FE
Sbjct: 33  LLGGLGFDYNAVVTAINIRDDNISLEAIHSILLAFE 68



 Score = 33.1 bits (74), Expect(3) = 1e-14
 Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
 Frame = +2

Query: 179 SVNYINQGSRTGG---FNQGNRGSGSNPFFNNRGGRASPRGGMNRGRGRFKHG---RIAC 340
           S NY +  +  GG   FN G RG G  P  NN   R   RGG N   GR       +  C
Sbjct: 81  SANYASSSNNRGGGRKFN-GGRGQGYAPNNNNYTYRGHGRGGRNGQGGRQNSNPSEKPQC 139

Query: 341 QIC 349
           Q+C
Sbjct: 140 QLC 142


>gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group]
          Length = 1621

 Score = 46.2 bits (108), Expect(3) = 2e-14
 Identities = 28/90 (31%), Positives = 46/90 (51%)
 Frame = +3

Query: 363 HTANKCFYRGDLTYGATNNVNTYSQNNDSANLSQSGPDPNLANNSSNMDSNQDTIWFPDS 542
           HTA  C+YR D  Y             D+ +++ +      A NS  +D+N    W+ D+
Sbjct: 371 HTAADCWYRYDEDYVP-----------DAKHVAAA------AVNSYGVDTN----WYIDT 409

Query: 543 GATNHVTYDFGNLNLASEYNGGDKVQIGNG 632
           GAT+HVT +   L +  +YNGG+++   +G
Sbjct: 410 GATDHVTGELDKLTMKEKYNGGEQIHTASG 439



 Score = 42.4 bits (98), Expect(3) = 2e-14
 Identities = 19/41 (46%), Positives = 30/41 (73%)
 Frame = +3

Query: 3   ISYIITGLGRDYNSVKVIINSRVEPYSLREVHALLLSFESR 125
           I YIITGLG  Y+ V   + +RVEP S+ ++++ +L+FE+R
Sbjct: 256 IQYIITGLGEGYSEVVSAVCARVEPISVSDLYSQVLNFEAR 296



 Score = 36.2 bits (82), Expect(3) = 2e-14
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
 Frame = +2

Query: 191 INQGSRTGGFNQGNRGSGSNPFFNNR----GGRASPRGGMNRGRGRFKHG---RIACQIC 349
           +N  +R GGF+ G RG+ +     +R    GG     GG  RGRGR   G   R  CQ+C
Sbjct: 308 VNVANR-GGFSHGGRGNSNGGQGGSRGGGGGGHGRGNGGGGRGRGRTPGGVDKRPICQVC 366

Query: 350 HR 355
            +
Sbjct: 367 FK 368


>gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1478

 Score = 46.2 bits (108), Expect(3) = 3e-14
 Identities = 28/90 (31%), Positives = 46/90 (51%)
 Frame = +3

Query: 363 HTANKCFYRGDLTYGATNNVNTYSQNNDSANLSQSGPDPNLANNSSNMDSNQDTIWFPDS 542
           HTA  C+YR D  Y             D+ +++ +      A NS  +D+N    W+ D+
Sbjct: 402 HTAADCWYRYDEDYVP-----------DAKHVAAA------AVNSYGVDTN----WYIDT 440

Query: 543 GATNHVTYDFGNLNLASEYNGGDKVQIGNG 632
           GAT+HVT +   L +  +YNGG+++   +G
Sbjct: 441 GATDHVTGELDKLTMKEKYNGGEQIHTASG 470



 Score = 42.4 bits (98), Expect(3) = 3e-14
 Identities = 19/41 (46%), Positives = 30/41 (73%)
 Frame = +3

Query: 3   ISYIITGLGRDYNSVKVIINSRVEPYSLREVHALLLSFESR 125
           I YIITGLG  Y+ V   + +RVEP S+ ++++ +L+FE+R
Sbjct: 288 IQYIITGLGEGYSEVVSAVCARVEPISVSDLYSQVLNFEAR 328



 Score = 35.4 bits (80), Expect(3) = 3e-14
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
 Frame = +2

Query: 191 INQGSRTGGFNQGNRGSGSNPFFNNRGG---RASPRGGMNRGRGRFKHG---RIACQICH 352
           +N  +R GGF+ G RG+ +     +RGG        GG  RGRGR   G   R  CQ+C 
Sbjct: 340 VNVANR-GGFSHGGRGNSNGGQGGSRGGGGGHGRRNGGGVRGRGRTPGGVDKRPICQVCF 398

Query: 353 R 355
           +
Sbjct: 399 K 399


>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1460

 Score = 46.2 bits (108), Expect(3) = 9e-14
 Identities = 28/90 (31%), Positives = 46/90 (51%)
 Frame = +3

Query: 363 HTANKCFYRGDLTYGATNNVNTYSQNNDSANLSQSGPDPNLANNSSNMDSNQDTIWFPDS 542
           HTA  C+YR D  Y             D+ +++ +      A NS  +D+N    W+ D+
Sbjct: 286 HTAADCWYRYDEDYVP-----------DAKHVAAA------AVNSYGVDTN----WYIDT 324

Query: 543 GATNHVTYDFGNLNLASEYNGGDKVQIGNG 632
           GAT+HVT +   L +  +YNGG+++   +G
Sbjct: 325 GATDHVTGELDKLTMKEKYNGGEQIHTASG 354



 Score = 42.4 bits (98), Expect(3) = 9e-14
 Identities = 19/41 (46%), Positives = 30/41 (73%)
 Frame = +3

Query: 3   ISYIITGLGRDYNSVKVIINSRVEPYSLREVHALLLSFESR 125
           I YIITGLG  Y+ V   + +RVEP S+ ++++ +L+FE+R
Sbjct: 170 IQYIITGLGEGYSEVVSAVCARVEPISVSDLYSQVLNFEAR 210



 Score = 33.9 bits (76), Expect(3) = 9e-14
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
 Frame = +2

Query: 191 INQGSRTGGFNQGNRGSGSNPFFNNR-----GGRASPRGGMNRGRGRFKHG---RIACQI 346
           +N  +R GGF+ G RG+ +     +R     GG     GG   GRGR   G   R  CQ+
Sbjct: 222 VNVANR-GGFSHGGRGNSNGGQGGSRGGGGGGGHGRGNGGGGHGRGRTPGGVDKRPICQV 280

Query: 347 CHR 355
           C +
Sbjct: 281 CFK 283


>gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1210

 Score = 44.7 bits (104), Expect(3) = 2e-13
 Identities = 28/69 (40%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
 Frame = +2

Query: 158 GTEGTTPSVNYINQGSRTGGFNQGNRGSGSNPFFNN--RGGRASPRGGMNRGR-GRFKHG 328
           G+ G+  SVN  N G   GG    N G G   +F+N  RGG    RGG  RG  GR    
Sbjct: 216 GSSGSYSSVNSANHGRNNGGGGNFNNGGG---YFSNRGRGGGRGDRGGCGRGNGGRNFKP 272

Query: 329 RIACQICHR 355
           R  CQ+C +
Sbjct: 273 RPTCQLCSK 281



 Score = 38.5 bits (88), Expect(3) = 2e-13
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +3

Query: 471 PDPNLANNSS-NMDSNQDTIWFPDSGATNHVTYDFGNLNLASEYNGGDKVQIGNG 632
           PD  +A  +S  +DSN    W+ D+GAT+H+T +   L     YNG +++   +G
Sbjct: 299 PDARVAAAASYGVDSN----WYVDTGATDHITNELEKLTTRDRYNGKEQIHTASG 349



 Score = 38.1 bits (87), Expect(3) = 2e-13
 Identities = 19/42 (45%), Positives = 25/42 (59%)
 Frame = +3

Query: 6   SYIITGLGRDYNSVKVIINSRVEPYSLREVHALLLSFESRWK 131
           SYI+ GL  DY  V   I  R E  ++ EV++ LLSFE  W+
Sbjct: 172 SYILAGLDSDYEQVVSSIVGRSEGVTISEVYSQLLSFEELWQ 213


>emb|CAN63649.1| hypothetical protein VITISV_037657 [Vitis vinifera]
          Length = 1131

 Score = 47.4 bits (111), Expect(3) = 2e-13
 Identities = 28/90 (31%), Positives = 41/90 (45%)
 Frame = +3

Query: 363 HTANKCFYRGDLTYGATNNVNTYSQNNDSANLSQSGPDPNLANNSSNMDSNQDTIWFPDS 542
           H A  C++R D TY  T N                    +LA   +   +  D  W+ D+
Sbjct: 264 HIAINCYHRFDQTYQPTMN-------------------NHLAAMVATPSTVGDESWYMDT 304

Query: 543 GATNHVTYDFGNLNLASEYNGGDKVQIGNG 632
           GAT+H+T +   LN  + + G DKV +GNG
Sbjct: 305 GATHHLTPNLNKLNSHTPFAGSDKVMVGNG 334



 Score = 44.7 bits (104), Expect(3) = 2e-13
 Identities = 19/41 (46%), Positives = 29/41 (70%)
 Frame = +3

Query: 3   ISYIITGLGRDYNSVKVIINSRVEPYSLREVHALLLSFESR 125
           I Y++ GL  +YNS  + + SR EP SL E+H++LL+ E+R
Sbjct: 115 ILYLLAGLRAEYNSFVITVTSRHEPLSLEEIHSMLLTHENR 155



 Score = 29.3 bits (64), Expect(3) = 2e-13
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 197 QGSRTGGFNQGNRGSGSNPFFNNRG-GRASPRGGMNRGRGRFKHG 328
           +  ++G F    RG+ +   FN++  GR   RG  N   G F HG
Sbjct: 183 KNQKSGQFKTQGRGNQNQQQFNHQNFGRGRGRGHYNNNGGNFGHG 227


>gb|AAD22155.1|AF061282_8 polyprotein [Sorghum bicolor]
          Length = 1012

 Score = 48.5 bits (114), Expect(3) = 2e-13
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
 Frame = +3

Query: 405 GATNNVNTYSQNN--------DSANLSQSGPDPNLANNSSNMDSNQDTIWFPDSGATNHV 560
           G  NN N ++ N           A  S SG  P  + +++      DT W+ D+GAT+H+
Sbjct: 236 GGHNNNNNFTNNTFLEGKAMVRIAATSMSGYPPKKSASAAATSYGVDTNWYMDTGATDHI 295

Query: 561 TYDFGNLNLASEYNGGDKVQIGNG 632
           T +   L +   YNG D V   +G
Sbjct: 296 TSELDQLTIRDRYNGNDHVHTASG 319



 Score = 38.9 bits (89), Expect(3) = 2e-13
 Identities = 17/44 (38%), Positives = 29/44 (65%)
 Frame = +3

Query: 3   ISYIITGLGRDYNSVKVIINSRVEPYSLREVHALLLSFESRWKV 134
           +SYI+ G+G ++ SV   + +R +P SL E+ A L+S E R ++
Sbjct: 142 VSYILMGVGEEFESVTSAVANRTDPISLPELQAQLVSHEQRREI 185



 Score = 33.5 bits (75), Expect(3) = 2e-13
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
 Frame = +2

Query: 167 GTTPSVNYINQGSRTGG---FNQGNRGSGSNPFF--NNRGGRASPRGGMNRGRGRF 319
           G+  SVN   +G R GG   +++G RG G    F     GGR   RGG +     F
Sbjct: 189 GSHSSVNSAEKGGRRGGRPSYSRGGRGGGGRAGFGRGRNGGRNGGRGGGHNNNNNF 244


>gb|ABA97279.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 297

 Score = 44.3 bits (103), Expect(3) = 9e-13
 Identities = 25/89 (28%), Positives = 41/89 (46%)
 Frame = +3

Query: 366 TANKCFYRGDLTYGATNNVNTYSQNNDSANLSQSGPDPNLANNSSNMDSNQDTIWFPDSG 545
           T   CF RG   Y AT+    Y ++          PDP     ++      D  W+ D+G
Sbjct: 121 TCQVCFKRG---YMATDCWYRYDEDYV--------PDPKYIAAAATSSYGVDANWYIDTG 169

Query: 546 ATNHVTYDFGNLNLASEYNGGDKVQIGNG 632
           AT+H+  +   L +  +YNGG+++   +G
Sbjct: 170 ATDHIIGELDKLTVKEKYNGGERIHTASG 198



 Score = 43.9 bits (102), Expect(3) = 9e-13
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
 Frame = +2

Query: 158 GTEGTTPSVNYINQGSRTGGFNQGNRGSGSNPFFNNRGGRASPRGGMNRGRGRFKHG--- 328
           GT+ T  SVN  N G+    +N G RG G+N    +  GR    GG  RG GR   G   
Sbjct: 64  GTQET--SVNLANHGNN---YNTGGRGDGNNGGHGSPRGRGRGNGGSGRGHGRAPRGADK 118

Query: 329 RIACQICHR 355
           R  CQ+C +
Sbjct: 119 RPTCQVCFK 127



 Score = 30.8 bits (68), Expect(3) = 9e-13
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 3   ISYIITGLGRDYNSVKVIINSRVEPYSLRE 92
           I YIITGLG  Y+ V   + +R EP + R+
Sbjct: 30  IQYIITGLGEGYSKVVSAVCARSEPLTARQ 59


>gb|AAK02020.2|AC074283_1 Putative gag-pol polyprotein [Oryza sativa]
           gi|31430072|gb|AAP52036.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 1058

 Score = 47.8 bits (112), Expect(3) = 4e-12
 Identities = 21/45 (46%), Positives = 31/45 (68%)
 Frame = +3

Query: 3   ISYIITGLGRDYNSVKVIINSRVEPYSLREVHALLLSFESRWKVL 137
           +SYI+ GL  DYNSV   +  R +P S+ E++ LL+ FESR ++L
Sbjct: 133 VSYILAGLDFDYNSVVTTVTGRTDPISVNELYGLLVGFESRLELL 177



 Score = 39.7 bits (91), Expect(3) = 4e-12
 Identities = 24/93 (25%), Positives = 47/93 (50%)
 Frame = +3

Query: 354 ELNHTANKCFYRGDLTYGATNNVNTYSQNNDSANLSQSGPDPNLANNSSNMDSNQDTIWF 533
           ++ HT  KC+ R D          ++++   SAN + +       ++S  +D+N    W+
Sbjct: 227 KVGHTVAKCWKRFD---------PSFTREEKSANTAAT-------SSSYGIDTN----WY 266

Query: 534 PDSGATNHVTYDFGNLNLASEYNGGDKVQIGNG 632
            DS AT+H+T +   L++  +Y+G ++V    G
Sbjct: 267 VDSNATDHITGEMEKLSVKDKYHGSEQVHNAGG 299



 Score = 29.3 bits (64), Expect(3) = 4e-12
 Identities = 21/57 (36%), Positives = 26/57 (45%)
 Frame = +2

Query: 179 SVNYINQGSRTGGFNQGNRGSGSNPFFNNRGGRASPRGGMNRGRGRFKHGRIACQIC 349
           S N +++G   GG  QG          NNRGG      G  RGRG  K  +  CQ+C
Sbjct: 184 SANAMSRGGCGGGHGQGGN--------NNRGG------GSGRGRGDGK-PKPTCQLC 225


>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
          Length = 1455

 Score = 57.4 bits (137), Expect(3) = 7e-12
 Identities = 31/93 (33%), Positives = 53/93 (56%)
 Frame = +3

Query: 354 ELNHTANKCFYRGDLTYGATNNVNTYSQNNDSANLSQSGPDPNLANNSSNMDSNQDTIWF 533
           ++ H   +C+YR D T+    N++  S+N+         P  N    +S + S+ +  W+
Sbjct: 315 KIGHVVAQCYYRFDHTFQVPQNLS--SRNSSPRAYYSFSPQVNGVIPTSEVFSDDN--WY 370

Query: 534 PDSGATNHVTYDFGNLNLASEYNGGDKVQIGNG 632
           PDSGA+NHVT +  NL  ++E+ G ++V +GNG
Sbjct: 371 PDSGASNHVTPNPENLMKSAEFAGQNQVHVGNG 403



 Score = 32.0 bits (71), Expect(3) = 7e-12
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +3

Query: 3   ISYIITGLGRDYNSVKVIINSRVEPYSLREVHALLLSFESR 125
           +  I+ GL  DY S    +  R + +S+ E+ ALL++ ESR
Sbjct: 165 VESILDGLPNDYESFVTSVILRNDDFSVEEIEALLMAHESR 205



 Score = 26.6 bits (57), Expect(3) = 7e-12
 Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 20/72 (27%)
 Frame = +2

Query: 194 NQGSRTG---GFNQGNRGSGSNPFFNNRGGRASPRGGMNRG--RGRFKHG---------- 328
           +QGS +G   GF +G        F+  RG   +  G  NRG  RGR   G          
Sbjct: 242 SQGSHSGYNGGFGRGGDFGRRGGFYGGRGFNWNYNGRSNRGGFRGRGNKGSFQARPPWNS 301

Query: 329 -----RIACQIC 349
                + ACQ+C
Sbjct: 302 DNQNEKPACQLC 313


>emb|CAN66823.1| hypothetical protein VITISV_003499 [Vitis vinifera]
          Length = 763

 Score = 52.8 bits (125), Expect(3) = 2e-11
 Identities = 26/97 (26%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
 Frame = +3

Query: 333 LLVKYAIELNHTANKCFYRGDLTYGATNNVN-TYSQNNDSANLSQSGPDPNLANNSSNMD 509
           ++ +  +++ H+ ++C+Y+ D ++     +  T S         Q G  PN+    + ++
Sbjct: 154 MVCQLCMKIGHSVDRCYYKYDPSFQGPRTLGFTPSFQRSPQTQVQGGNKPNMQVLMATLE 213

Query: 510 SNQDTIWFPDSGATNHVTYDFGNLNLASEYNGGDKVQ 620
           +  DT W+PDSGA+ HVT +  NL   + Y G ++V+
Sbjct: 214 NICDTNWYPDSGASXHVTANANNLVEHTXYYGNEQVR 250



 Score = 34.7 bits (78), Expect(3) = 2e-11
 Identities = 16/41 (39%), Positives = 26/41 (63%)
 Frame = +3

Query: 3   ISYIITGLGRDYNSVKVIINSRVEPYSLREVHALLLSFESR 125
           I  I  G   +Y++  + INSR+E Y + E+ +LLL+ E+R
Sbjct: 28  IDVITDGFPSEYDTFFLTINSRIEDYLIEEIESLLLAQEAR 68



 Score = 27.3 bits (59), Expect(3) = 2e-11
 Identities = 23/60 (38%), Positives = 29/60 (48%)
 Frame = +2

Query: 140 VVQNNFGTEGTTPSVNYINQGSRTGGFNQGNRGSGSNPFFNNRGGRASPRGGMNRGRGRF 319
           + ++N   +  T SVN I QGS  G F +GN   G     NN+    SP    N GRG F
Sbjct: 69  IEKHNKNVDSETASVN-ITQGS--GNFGRGNFSQGRGFISNNQ---FSP----NFGRGNF 118


>emb|CAN82769.1| hypothetical protein VITISV_037882 [Vitis vinifera]
          Length = 2220

 Score = 64.3 bits (155), Expect(2) = 3e-11
 Identities = 34/93 (36%), Positives = 52/93 (55%)
 Frame = +3

Query: 354  ELNHTANKCFYRGDLTYGATNNVNTYSQNNDSANLSQSGPDPNLANNSSNMDSNQDTIWF 533
            +  HT   C++R D++Y ++ + NT   N  + N       P +  +S+N+    D  W+
Sbjct: 1139 KFGHTVQICYHRFDISYQSSQSSNTSPSNAGNPNSI-----PAMVASSNNL---ADDTWY 1190

Query: 534  PDSGATNHVTYDFGNLNLASEYNGGDKVQIGNG 632
             DSGA++H+T   GNL  +S Y G DKV IGNG
Sbjct: 1191 LDSGASHHLTQSVGNLTSSSPYTGIDKVTIGNG 1223



 Score = 30.0 bits (66), Expect(2) = 3e-11
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
 Frame = +2

Query: 179  SVNYINQGSRTGGFNQGNRGSGSN--PFFNNRGGRASPRGGMNRGRGRFKHG---RIACQ 343
            S NY +  +  GG  + N G G N  P  +N   R   RGG     GR       +  CQ
Sbjct: 1076 SANYASSSNNRGGGRRYNGGRGQNHTPNISNYTYRGCGRGGRYGQNGRHNSNSSEKPQCQ 1135

Query: 344  IC 349
            +C
Sbjct: 1136 LC 1137


>ref|XP_002449872.1| hypothetical protein SORBIDRAFT_05g024695 [Sorghum bicolor]
           gi|241935715|gb|EES08860.1| hypothetical protein
           SORBIDRAFT_05g024695 [Sorghum bicolor]
          Length = 438

 Score = 45.4 bits (106), Expect(3) = 3e-11
 Identities = 29/90 (32%), Positives = 43/90 (47%)
 Frame = +3

Query: 363 HTANKCFYRGDLTYGATNNVNTYSQNNDSANLSQSGPDPNLANNSSNMDSNQDTIWFPDS 542
           H+A  CF R D +Y       T  Q + SA  S          +   +DSN    W+ D+
Sbjct: 296 HSAFDCFKRHDASY-------TPPQKSASAATS----------SHYGVDSN----WYMDT 334

Query: 543 GATNHVTYDFGNLNLASEYNGGDKVQIGNG 632
           G T+H+T +   L +  +Y+GGD+V   NG
Sbjct: 335 GVTDHITSELDKLTVRDKYHGGDQVHTANG 364



 Score = 42.0 bits (97), Expect(3) = 3e-11
 Identities = 19/44 (43%), Positives = 30/44 (68%)
 Frame = +3

Query: 3   ISYIITGLGRDYNSVKVIINSRVEPYSLREVHALLLSFESRWKV 134
           +S I+TGL  DY+ V   + +RVEP S+ E++A L+S E R ++
Sbjct: 175 VSCILTGLDADYDPVVTAVTARVEPISVAELYAQLVSHEQRMEI 218



 Score = 26.2 bits (56), Expect(3) = 3e-11
 Identities = 26/66 (39%), Positives = 30/66 (45%), Gaps = 14/66 (21%)
 Frame = +2

Query: 194 NQGSRTGGFNQGN-RGSG-------------SNPFFNNRGGRASPRGGMNRGRGRFKHGR 331
           N  SR G  N G  RG G             SN + NNRG  +  RGG  R R  F+ G 
Sbjct: 230 NLASRGGRHNNGGYRGGGGRNNGARGGYNNRSNNYNNNRG--SGGRGGGGR-RVPFQPG- 285

Query: 332 IACQIC 349
           + CQIC
Sbjct: 286 MFCQIC 291