BLASTX nr result
ID: Rehmannia26_contig00032351
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia26_contig00032351
(789 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polyme... 317 2e-84
ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polyme... 312 7e-83
ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polyme... 305 1e-80
ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [A... 294 2e-77
ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Popu... 292 1e-76
emb|CBI28010.3| unnamed protein product [Vitis vinifera] 292 1e-76
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme... 292 1e-76
ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Popu... 290 3e-76
ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Popu... 290 3e-76
gb|EXB59780.1| putative RNA-dependent RNA polymerase 3 [Morus no... 288 1e-75
ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Caps... 286 7e-75
gb|EMJ05474.1| hypothetical protein PRUPE_ppa001584mg [Prunus pe... 286 7e-75
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ... 285 1e-74
ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabid... 280 4e-73
gb|AAC62123.1| hypothetical protein [Arabidopsis thaliana] 280 4e-73
ref|XP_002336366.1| rna-dependent RNA polymerase [Populus tricho... 276 6e-72
ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citr... 274 2e-71
ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citr... 274 2e-71
ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutr... 272 1e-70
ref|XP_006645607.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA... 270 4e-70
>ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
tuberosum]
Length = 911
Score = 317 bits (813), Expect = 2e-84
Identities = 154/259 (59%), Positives = 197/259 (76%)
Frame = -3
Query: 778 LDFGFVAQRMISSGVPLNEPYLQLCLSNLESGEKTKLKQGKIPVSESFYLMGTADPTGVL 599
+D + RMISSG+PLNEP+L+ LS L E+TKL+ GK+P+S+SFYLMGTADPTGVL
Sbjct: 588 MDDDCLTARMISSGIPLNEPHLRARLSRLAKIERTKLRGGKLPISDSFYLMGTADPTGVL 647
Query: 598 NTDEVCVILDNGQISGKVLVYRNPGMHFGDVHIMEAVYVKEMEEVVGNAKYGIFFSTKGS 419
++EVCVILDNGQISG+VLVYRNPG+HFGDVH+M+A YV+E+ +VVG+AKYGIFFSTKG
Sbjct: 648 ESNEVCVILDNGQISGRVLVYRNPGLHFGDVHVMKARYVEELADVVGDAKYGIFFSTKGP 707
Query: 418 RSAAYEMATGDFDGDMYWVSRNPELLKYFKAHKPWTRSNSVPQSEKKNPQEFSDXXXXXX 239
RSAA E+A GDFDGDMYWVS N +++ + +PW+R +S P++ K P EFS
Sbjct: 708 RSAATEIANGDFDGDMYWVSINRKVVDSYTTSRPWSRMHSTPKAVSKKPSEFSADKLEYE 767
Query: 238 XXXXXXEARSPSFSMATAADSWLTYMDRLLILGDHCATEKKSLKDKMIQLVDIYYDALDA 59
EA+S +M+ AADSWL +MDRLL+L D E SLK KM+ L+DIYYDALDA
Sbjct: 768 LFRQFLEAKSKGANMSVAADSWLAFMDRLLMLRDDNVDEMHSLKGKMLHLIDIYYDALDA 827
Query: 58 PKTGNKVPVPNELRVDTFP 2
PK+G KV +P++L+ + FP
Sbjct: 828 PKSGKKVSIPHDLKANKFP 846
>ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
lycopersicum]
Length = 1011
Score = 312 bits (800), Expect = 7e-83
Identities = 153/259 (59%), Positives = 192/259 (74%)
Frame = -3
Query: 778 LDFGFVAQRMISSGVPLNEPYLQLCLSNLESGEKTKLKQGKIPVSESFYLMGTADPTGVL 599
+D + RMISSG+PLNEP+L LS L E+TKL+ GK+P+S+SFYLMGTADPTGVL
Sbjct: 586 MDDECLTARMISSGIPLNEPHLHARLSRLAKIERTKLRGGKLPISDSFYLMGTADPTGVL 645
Query: 598 NTDEVCVILDNGQISGKVLVYRNPGMHFGDVHIMEAVYVKEMEEVVGNAKYGIFFSTKGS 419
++EVCVILDNGQ+SG+VLVYRNPG+HFGDVH+M+A YV+E+ +VVG+AKYGIFFSTKG
Sbjct: 646 ESNEVCVILDNGQVSGRVLVYRNPGLHFGDVHVMKARYVEELADVVGDAKYGIFFSTKGP 705
Query: 418 RSAAYEMATGDFDGDMYWVSRNPELLKYFKAHKPWTRSNSVPQSEKKNPQEFSDXXXXXX 239
RSAA E+A GDFDGDMYWVS N +L+ + +PW R +S P + K P EFS
Sbjct: 706 RSAATEIANGDFDGDMYWVSINRKLVDSYTTSRPWIRMHSTPNAVSKKPSEFSADELEYE 765
Query: 238 XXXXXXEARSPSFSMATAADSWLTYMDRLLILGDHCATEKKSLKDKMIQLVDIYYDALDA 59
EA+S +M+ AADSWL +MDRLL L D + SLK KM+ L+DIYYDALDA
Sbjct: 766 LFRQFLEAKSKGANMSLAADSWLAFMDRLLTLRDDNVDDMHSLKGKMLHLIDIYYDALDA 825
Query: 58 PKTGNKVPVPNELRVDTFP 2
PK+G KV +P+ L+ + FP
Sbjct: 826 PKSGKKVSIPHYLKANKFP 844
>ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
tuberosum]
Length = 1110
Score = 305 bits (781), Expect = 1e-80
Identities = 149/265 (56%), Positives = 191/265 (72%), Gaps = 3/265 (1%)
Frame = -3
Query: 787 HDGLDFGFVAQRMISSGVPLNEPYLQLCLSNLESGEKTKLKQGKIPVSESFYLMGTADPT 608
H D A MI +GVPL EPYL CLS+L E+ LK G++P++++FYLMGTADPT
Sbjct: 668 HRDRDDASTATSMIMAGVPLTEPYLWCCLSSLAKEERNGLKGGRLPIADTFYLMGTADPT 727
Query: 607 GVLNTDEVCVILDNGQISGKVLVYRNPGMHFGDVHIMEAVYVKEMEEVVGNAKYGIFFST 428
LN EVCVIL++GQI G+VLVYRNPG+HFGD+H + AV VK + ++VGNAKYGIFFST
Sbjct: 728 DTLNPHEVCVILEHGQIFGEVLVYRNPGLHFGDIHRLLAVPVKNLGDIVGNAKYGIFFST 787
Query: 427 KGSRSAAYEMATGDFDGDMYWVSRNPELLKYFKAHKPWTRSNSVPQSEKKNPQEFSDXXX 248
KG RSAA E+A GDFDGD YWVS+NP+LLKYF A +PW+R +S P++ + P FS
Sbjct: 788 KGPRSAATEIANGDFDGDKYWVSQNPQLLKYFTASRPWSRIHSTPKTLHREPNNFSAEER 847
Query: 247 XXXXXXXXXEARSPSFSMATAADSWLTYMDRLLILGDHCATEK---KSLKDKMIQLVDIY 77
E R P++SMA A+ +W MDRLLILG + TE KS+K+K+ +L+D+Y
Sbjct: 848 EHDLFQTFLETRMPNYSMADASANWYALMDRLLILGKNNTTENEEIKSVKEKLFELIDLY 907
Query: 76 YDALDAPKTGNKVPVPNELRVDTFP 2
YDA+DAPK+GNKV +P L+VD FP
Sbjct: 908 YDAIDAPKSGNKVYIPKRLKVDKFP 932
>ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [Amborella trichopoda]
gi|548857326|gb|ERN15132.1| hypothetical protein
AMTR_s00056p00110240 [Amborella trichopoda]
Length = 988
Score = 294 bits (753), Expect = 2e-77
Identities = 144/252 (57%), Positives = 182/252 (72%), Gaps = 1/252 (0%)
Frame = -3
Query: 754 RMISSGVPLNEPYLQLCLSNLESGEKTKLKQGKIPVSESFYLMGTADPTGVLNTDEVCVI 575
RMI G+PL EPYLQ LS L E+ LK+GK+ + S+YLMGTADPTG L +EVC+I
Sbjct: 573 RMIFCGLPLEEPYLQHRLSILMKEERKGLKEGKVLLPNSYYLMGTADPTGKLKGNEVCII 632
Query: 574 LDNGQISGKVLVYRNPGMHFGDVHIMEAVYVKEMEEVVGNAKYGIFFSTKGSRSAAYEMA 395
LD+GQISGKVLVYR+PG+HFGD+H+ A Y++++ E+VGNAK+ IFFST+G RSAA E+A
Sbjct: 633 LDHGQISGKVLVYRHPGLHFGDIHVFTATYIEDLVEIVGNAKFAIFFSTQGPRSAADEIA 692
Query: 394 TGDFDGDMYWVSRNPELLKYFKAHKPWTRSNSVPQSEKKNPQEFSDXXXXXXXXXXXXEA 215
GDFDGDMYW+S NPELL YFKA PW RS+S ++ P E+S E+
Sbjct: 693 NGDFDGDMYWISTNPELLHYFKAGPPWERSSSEKPPPQRKPIEYSPDELETELFDLFLES 752
Query: 214 R-SPSFSMATAADSWLTYMDRLLILGDHCATEKKSLKDKMIQLVDIYYDALDAPKTGNKV 38
R PS + AADSWL YMDRLL LGD CA EK L KM++L D+YY+A+DAPK+G KV
Sbjct: 753 RFHPSIAKCAAADSWLVYMDRLLTLGDECAEEKGCLHQKMLKLADLYYEAVDAPKSGKKV 812
Query: 37 PVPNELRVDTFP 2
VP +L+ + +P
Sbjct: 813 EVPKDLKPERYP 824
>ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Populus trichocarpa]
gi|550336519|gb|ERP59562.1| hypothetical protein
POPTR_0006s17780g [Populus trichocarpa]
Length = 866
Score = 292 bits (747), Expect = 1e-76
Identities = 147/256 (57%), Positives = 178/256 (69%), Gaps = 2/256 (0%)
Frame = -3
Query: 763 VAQRMISSGVPLNEPYLQLCLSNLESGEKTKLKQGKIPVSESFYLMGTADPTGVLNTDEV 584
+ MI G+PL EPYLQ LS L+ EK LK GKIPV ES+YLMGTADPTG+L +DEV
Sbjct: 455 IVATMIGCGIPLEEPYLQHHLSILKKEEKKSLKGGKIPVPESYYLMGTADPTGLLESDEV 514
Query: 583 CVILDNGQISGKVLVYRNPGMHFGDVHIMEAVYVKEMEEVVGNAKYGIFFSTKGSRSAAY 404
C+ILD GQ+SG+VLVYRNPG+HFGD+HI++A YV+E+E+ VGNAKY IFF KG RS A
Sbjct: 515 CIILDCGQVSGEVLVYRNPGLHFGDIHILKATYVRELEDFVGNAKYAIFFPCKGPRSLAD 574
Query: 403 EMATGDFDGDMYWVSRNPELLKYFKAHKPWTRSNSVPQSEKKNPQEFSDXXXXXXXXXXX 224
EM+ GDFDGDM++VSRNP LL+ FK +PWT S S P + P EFSD
Sbjct: 575 EMSGGDFDGDMFFVSRNPRLLENFKQTEPWTPSTSTPNVPNRKPSEFSDEELEVELFKLF 634
Query: 223 XEAR-SPSFSMATAADSWLTYMDRLLILGDHCATEKKSLKDKMIQLVDIYYDALDAPKT- 50
R PSF++ AADSWL MDRLL LG+ C E +K + L+DIYYDALDAPK
Sbjct: 635 LRNRFQPSFTVGVAADSWLAMMDRLLTLGNDCTEEIACVKKNINLLIDIYYDALDAPKKG 694
Query: 49 GNKVPVPNELRVDTFP 2
G K+ VP L+ + FP
Sbjct: 695 GRKIEVPEALKAELFP 710
>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
Length = 929
Score = 292 bits (747), Expect = 1e-76
Identities = 139/255 (54%), Positives = 180/255 (70%), Gaps = 1/255 (0%)
Frame = -3
Query: 763 VAQRMISSGVPLNEPYLQLCLSNLESGEKTKLKQGKIPVSESFYLMGTADPTGVLNTDEV 584
+ RMI SG+P++EP+L CLS + + E+ L+ GK+PV++ FYLMGTADPTG L +DEV
Sbjct: 508 IVTRMILSGIPIDEPFLHHCLSFMVNEERKGLRVGKLPVNDCFYLMGTADPTGTLKSDEV 567
Query: 583 CVILDNGQISGKVLVYRNPGMHFGDVHIMEAVYVKEMEEVVGNAKYGIFFSTKGSRSAAY 404
C+ILD+GQ+ G+VLVY++PG+HFGD+H++ A YV+ +EE VGNAKY IFF KG RS A
Sbjct: 568 CIILDHGQVQGRVLVYKHPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSLAD 627
Query: 403 EMATGDFDGDMYWVSRNPELLKYFKAHKPWTRSNSVPQSEKKNPQEFSDXXXXXXXXXXX 224
EMA DFDGDMYWVSRN +LL+YF+A +PW R S K P +FS
Sbjct: 628 EMANSDFDGDMYWVSRNQQLLQYFRASEPWMRKRSTRHVPSKRPTDFSPDELEHELFQLF 687
Query: 223 XEAR-SPSFSMATAADSWLTYMDRLLILGDHCATEKKSLKDKMIQLVDIYYDALDAPKTG 47
R S ++ AAD+WL +MDRLL L D C+ EK+ LK KM++L DIYYDALDAPK+G
Sbjct: 688 LTTRFQTSSAIGMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPKSG 747
Query: 46 NKVPVPNELRVDTFP 2
KV V EL+ + FP
Sbjct: 748 MKVNVSKELKAEKFP 762
>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
vinifera]
Length = 943
Score = 292 bits (747), Expect = 1e-76
Identities = 139/255 (54%), Positives = 180/255 (70%), Gaps = 1/255 (0%)
Frame = -3
Query: 763 VAQRMISSGVPLNEPYLQLCLSNLESGEKTKLKQGKIPVSESFYLMGTADPTGVLNTDEV 584
+ RMI SG+P++EP+L CLS + + E+ L+ GK+PV++ FYLMGTADPTG L +DEV
Sbjct: 522 IVTRMILSGIPIDEPFLHHCLSFMVNEERKGLRVGKLPVNDCFYLMGTADPTGTLKSDEV 581
Query: 583 CVILDNGQISGKVLVYRNPGMHFGDVHIMEAVYVKEMEEVVGNAKYGIFFSTKGSRSAAY 404
C+ILD+GQ+ G+VLVY++PG+HFGD+H++ A YV+ +EE VGNAKY IFF KG RS A
Sbjct: 582 CIILDHGQVQGRVLVYKHPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSLAD 641
Query: 403 EMATGDFDGDMYWVSRNPELLKYFKAHKPWTRSNSVPQSEKKNPQEFSDXXXXXXXXXXX 224
EMA DFDGDMYWVSRN +LL+YF+A +PW R S K P +FS
Sbjct: 642 EMANSDFDGDMYWVSRNQQLLQYFRASEPWMRKRSTRHVPSKRPTDFSPDELEHELFQLF 701
Query: 223 XEAR-SPSFSMATAADSWLTYMDRLLILGDHCATEKKSLKDKMIQLVDIYYDALDAPKTG 47
R S ++ AAD+WL +MDRLL L D C+ EK+ LK KM++L DIYYDALDAPK+G
Sbjct: 702 LTTRFQTSSAIGMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPKSG 761
Query: 46 NKVPVPNELRVDTFP 2
KV V EL+ + FP
Sbjct: 762 MKVNVSKELKAEKFP 776
>ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334280|gb|ERP58267.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 877
Score = 290 bits (743), Expect = 3e-76
Identities = 146/256 (57%), Positives = 179/256 (69%), Gaps = 2/256 (0%)
Frame = -3
Query: 763 VAQRMISSGVPLNEPYLQLCLSNLESGEKTKLKQGKIPVSESFYLMGTADPTGVLNTDEV 584
+ MI G+PL EPYLQ LS L EK LK GKIPV ES+YLMGTADPTG+L +DEV
Sbjct: 455 IVATMIGCGIPLEEPYLQCRLSILMKEEKKSLKGGKIPVPESYYLMGTADPTGLLESDEV 514
Query: 583 CVILDNGQISGKVLVYRNPGMHFGDVHIMEAVYVKEMEEVVGNAKYGIFFSTKGSRSAAY 404
C+ILD GQISG+VL+YRNPG+HFGD+HI++A YV+E+E+ VGNAKY IFF KG RS A
Sbjct: 515 CIILDCGQISGEVLIYRNPGLHFGDIHILKATYVRELEDFVGNAKYAIFFPCKGPRSLAD 574
Query: 403 EMATGDFDGDMYWVSRNPELLKYFKAHKPWTRSNSVPQSEKKNPQEFSDXXXXXXXXXXX 224
EM+ GDFDGDM++VSRNP+LL+ FK +PWT S S P + P EFSD
Sbjct: 575 EMSGGDFDGDMFFVSRNPQLLETFKQTEPWTPSTSTPNVPNRKPSEFSDEELEVELFKLF 634
Query: 223 XEAR-SPSFSMATAADSWLTYMDRLLILGDHCATEKKSLKDKMIQLVDIYYDALDAPKT- 50
R PS ++ AADSWL MDRLL LG+ CA E +K+ + L+DIYYDALDAPK
Sbjct: 635 LRNRFQPSSTVGVAADSWLAMMDRLLTLGNDCAEEIVCMKENINLLIDIYYDALDAPKKG 694
Query: 49 GNKVPVPNELRVDTFP 2
G ++ VP L+ + FP
Sbjct: 695 GRRIEVPEGLKAELFP 710
>ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334279|gb|ERP58266.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 899
Score = 290 bits (743), Expect = 3e-76
Identities = 146/256 (57%), Positives = 179/256 (69%), Gaps = 2/256 (0%)
Frame = -3
Query: 763 VAQRMISSGVPLNEPYLQLCLSNLESGEKTKLKQGKIPVSESFYLMGTADPTGVLNTDEV 584
+ MI G+PL EPYLQ LS L EK LK GKIPV ES+YLMGTADPTG+L +DEV
Sbjct: 477 IVATMIGCGIPLEEPYLQCRLSILMKEEKKSLKGGKIPVPESYYLMGTADPTGLLESDEV 536
Query: 583 CVILDNGQISGKVLVYRNPGMHFGDVHIMEAVYVKEMEEVVGNAKYGIFFSTKGSRSAAY 404
C+ILD GQISG+VL+YRNPG+HFGD+HI++A YV+E+E+ VGNAKY IFF KG RS A
Sbjct: 537 CIILDCGQISGEVLIYRNPGLHFGDIHILKATYVRELEDFVGNAKYAIFFPCKGPRSLAD 596
Query: 403 EMATGDFDGDMYWVSRNPELLKYFKAHKPWTRSNSVPQSEKKNPQEFSDXXXXXXXXXXX 224
EM+ GDFDGDM++VSRNP+LL+ FK +PWT S S P + P EFSD
Sbjct: 597 EMSGGDFDGDMFFVSRNPQLLETFKQTEPWTPSTSTPNVPNRKPSEFSDEELEVELFKLF 656
Query: 223 XEAR-SPSFSMATAADSWLTYMDRLLILGDHCATEKKSLKDKMIQLVDIYYDALDAPKT- 50
R PS ++ AADSWL MDRLL LG+ CA E +K+ + L+DIYYDALDAPK
Sbjct: 657 LRNRFQPSSTVGVAADSWLAMMDRLLTLGNDCAEEIVCMKENINLLIDIYYDALDAPKKG 716
Query: 49 GNKVPVPNELRVDTFP 2
G ++ VP L+ + FP
Sbjct: 717 GRRIEVPEGLKAELFP 732
>gb|EXB59780.1| putative RNA-dependent RNA polymerase 3 [Morus notabilis]
Length = 521
Score = 288 bits (737), Expect = 1e-75
Identities = 146/279 (52%), Positives = 179/279 (64%), Gaps = 20/279 (7%)
Frame = -3
Query: 778 LDFGFVAQRMISSGVPLNEPYLQLCLSNLESGEKTKLKQGKIPVSESFYLMGTADPTGVL 599
+D RMI SG+PL EPYLQ L L E+ L+ G++ V + FYLMGTADPTG L
Sbjct: 77 IDDDSTVARMILSGIPLEEPYLQHRLFVLVKEERKSLRGGRLHVDDCFYLMGTADPTGKL 136
Query: 598 NTDEVCVILDNGQISGKVLVYRNPGMHFGDVHIMEAVYVKEMEEVVGNAKYGIFFSTKGS 419
DEVC++L NGQ+SGKVLVYRNPG+HFGD+H+++A Y++EME VGNAKY IFFS KG
Sbjct: 137 EHDEVCIVLANGQVSGKVLVYRNPGLHFGDIHVLKATYIEEMESFVGNAKYAIFFSKKGP 196
Query: 418 RSAAYEMATGDFDGDMYWVSRNPELLKYFKAHKPWTRSNSVPQSEKKNPQEFSDXXXXXX 239
RS A EMA GDFDGDM+WVSRNPELLKYFK PW + +S + + K P + SD
Sbjct: 197 RSIADEMAGGDFDGDMFWVSRNPELLKYFKPSDPWIKKSSTGKVKSKQPIDLSDRELEDE 256
Query: 238 XXXXXXEAR-SPSFSMATAADSWLTYMDRLLILGDHCATEKKSLKDKMIQLVDIYYDALD 62
R PSF+ + A++ WL MDR L LGD C EK ++KD + +LVDIYYDALD
Sbjct: 257 LIKLFLTVRFKPSFAKSEASEGWLALMDRFLTLGDDCVAEKNAVKDNLFELVDIYYDALD 316
Query: 61 APKTGNK-------------------VPVPNELRVDTFP 2
APK G K V VP EL+ + FP
Sbjct: 317 APKQGGKQQDLAKFFEAYAALELSFQVEVPRELKPNRFP 355
>ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Capsella rubella]
gi|482565615|gb|EOA29804.1| hypothetical protein
CARUB_v10012898mg [Capsella rubella]
Length = 982
Score = 286 bits (731), Expect = 7e-75
Identities = 142/259 (54%), Positives = 184/259 (71%), Gaps = 6/259 (2%)
Frame = -3
Query: 760 AQRMISSGVPLNEPYLQLCLSNLESGEKTKLKQGKIPVSESFYLMGTADPTGVLNTDEVC 581
A +MI +G+PL+EP+L+ CLS+ EK LK G++PV+ES+YLMGT DPTG L DEVC
Sbjct: 565 AAQMILAGIPLDEPHLKTCLSSFLKREKNDLKAGRLPVTESYYLMGTVDPTGELKEDEVC 624
Query: 580 VILDNGQISGKVLVYRNPGMHFGDVHIMEAVYVKEMEEVVGNAKYGIFFSTKGSRSAAYE 401
VIL++GQISG+VLVYRNPG+HFGD+H+++A YVK +EE VGN+K+ +FF KG RS E
Sbjct: 625 VILESGQISGEVLVYRNPGLHFGDIHVLKATYVKALEEYVGNSKFAVFFPQKGPRSLGDE 684
Query: 400 MATGDFDGDMYWVSRNPELLKYFKAHKPW------TRSNSVPQSEKKNPQEFSDXXXXXX 239
+A GDFDGD+Y++SRNPELL++FK +PW ++SNS + +P+E +
Sbjct: 685 IAGGDFDGDIYFISRNPELLEHFKPSEPWVSLTPPSKSNSARGPCQFSPEELEEELFEMF 744
Query: 238 XXXXXXEARSPSFSMATAADSWLTYMDRLLILGDHCATEKKSLKDKMIQLVDIYYDALDA 59
S + AADSWLT MDR LILGD A EK +K KM++L+DIYYDALDA
Sbjct: 745 LKAGF----HASNVIGMAADSWLTIMDRFLILGDESADEKAEMKQKMLELIDIYYDALDA 800
Query: 58 PKTGNKVPVPNELRVDTFP 2
PK G KV +PNELR D FP
Sbjct: 801 PKKGAKVYLPNELRPDIFP 819
>gb|EMJ05474.1| hypothetical protein PRUPE_ppa001584mg [Prunus persica]
Length = 798
Score = 286 bits (731), Expect = 7e-75
Identities = 145/264 (54%), Positives = 185/264 (70%), Gaps = 2/264 (0%)
Frame = -3
Query: 787 HDGLDFGFVAQRMISSGVPLNEPYLQLCLSNLESGEKTKLKQGKIPVSESFYLMGTADPT 608
H +D + + +MI SG+PL E YLQ LS L+ E L++GKI +S+ LMGTADPT
Sbjct: 368 HGEIDDDYNSVKMILSGIPLEESYLQYRLSILKKEENKSLQKGKICSPQSYMLMGTADPT 427
Query: 607 GVLNTDEVCVILDNGQISGKVLVYRNPGMHFGDVHIMEAVYVKEMEEVVGNAKYGIFFST 428
G+L DEVC+ILD+GQ+SG+VLVYR+PG+HFGD+H+++A YVKE+E VVGNAKY IFFS
Sbjct: 428 GILERDEVCIILDSGQMSGQVLVYRHPGLHFGDIHLLKARYVKELEYVVGNAKYAIFFSC 487
Query: 427 KGSRSAAYEMATGDFDGDMYWVSRNPELLKYFKAHKPWTR-SNSVPQSEKKNPQEFSDXX 251
KG RS A EM GDFDGD+YWVSRNP+LL+ FK +PW S+S P+ P E
Sbjct: 488 KGPRSVADEMGGGDFDGDLYWVSRNPQLLECFKPSEPWIEASSSTPKVASTRPSELLPNH 547
Query: 250 XXXXXXXXXXEAR-SPSFSMATAADSWLTYMDRLLILGDHCATEKKSLKDKMIQLVDIYY 74
+ R PSF+M+ A+DSWL MDRLLILGD +EK +K M++LVD+YY
Sbjct: 548 IEDALIKLFLKTRFEPSFAMSEASDSWLAMMDRLLILGDSSNSEKTHVKANMLRLVDLYY 607
Query: 73 DALDAPKTGNKVPVPNELRVDTFP 2
+ALDAPK G KV VP EL+ + FP
Sbjct: 608 EALDAPKKGGKVVVPGELKSNLFP 631
>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
RNA polymerase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 981
Score = 285 bits (729), Expect = 1e-74
Identities = 146/259 (56%), Positives = 184/259 (71%), Gaps = 6/259 (2%)
Frame = -3
Query: 760 AQRMISSGVPLNEPYLQLCLSNLESGEKTKLKQGKIPVSESFYLMGTADPTGVLNTDEVC 581
A +MI G+PL+EP+L+ LS L EK LK G++PV+ES+YLMGT DPTG L DEVC
Sbjct: 562 AAQMILVGIPLDEPHLKNHLSILLKTEKNDLKAGRLPVTESYYLMGTVDPTGELKEDEVC 621
Query: 580 VILDNGQISGKVLVYRNPGMHFGDVHIMEAVYVKEMEEVVGNAKYGIFFSTKGSRSAAYE 401
VIL++GQISG+VLVYRNPG+HFGD+HI++A YVK +EE VGN+KY +FF KG RS E
Sbjct: 622 VILESGQISGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNSKYAVFFPQKGPRSLGDE 681
Query: 400 MATGDFDGDMYWVSRNPELLKYFKAHKPW------TRSNSVPQSEKKNPQEFSDXXXXXX 239
+A GDFDGDMY++SRNPELL++FK +PW ++SNS + +P+E +
Sbjct: 682 IAGGDFDGDMYFISRNPELLEHFKPSEPWVSLTPPSKSNSGRAPSQLSPEELEEELFEMF 741
Query: 238 XXXXXXEARSPSFSMATAADSWLTYMDRLLILGDHCATEKKSLKDKMIQLVDIYYDALDA 59
S + AADSWLT MDRLLILGD A EK +K KM++L+DIYYDALDA
Sbjct: 742 LKAGF----HASNVIGIAADSWLTIMDRLLILGDERAEEKAEMKKKMLKLIDIYYDALDA 797
Query: 58 PKTGNKVPVPNELRVDTFP 2
PK G+KV +PNELR D FP
Sbjct: 798 PKKGDKVYLPNELRPDIFP 816
>ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabidopsis thaliana]
gi|322967572|sp|O82188.2|RDR5_ARATH RecName:
Full=Probable RNA-dependent RNA polymerase 5;
Short=AtRDRP5; AltName: Full=RNA-directed RNA polymerase
5 gi|330251850|gb|AEC06944.1| probable RNA-dependent RNA
polymerase 5 [Arabidopsis thaliana]
Length = 977
Score = 280 bits (716), Expect = 4e-73
Identities = 143/259 (55%), Positives = 182/259 (70%), Gaps = 6/259 (2%)
Frame = -3
Query: 760 AQRMISSGVPLNEPYLQLCLSNLESGEKTKLKQGKIPVSESFYLMGTADPTGVLNTDEVC 581
A +MI G+PL+EP+L+ LS L EK LK GK+PV+ES+YLMGT DPTG L DEVC
Sbjct: 558 AAQMILVGIPLDEPHLKNYLSILLKTEKNDLKAGKLPVTESYYLMGTVDPTGALKEDEVC 617
Query: 580 VILDNGQISGKVLVYRNPGMHFGDVHIMEAVYVKEMEEVVGNAKYGIFFSTKGSRSAAYE 401
VIL++GQISG+VLVYRNPG+HFGD+HI++A YVK +EE VGN+K+ +FF KG RS E
Sbjct: 618 VILESGQISGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDE 677
Query: 400 MATGDFDGDMYWVSRNPELLKYFKAHKPW------TRSNSVPQSEKKNPQEFSDXXXXXX 239
+A GDFDGDMY++SRNPELL+ FK +PW ++SNS + +P+E +
Sbjct: 678 IAGGDFDGDMYFISRNPELLENFKPSEPWVSLTPPSKSNSGRAPSQLSPEELEEELFEMF 737
Query: 238 XXXXXXEARSPSFSMATAADSWLTYMDRLLILGDHCATEKKSLKDKMIQLVDIYYDALDA 59
S + AADSWLT MDR LILGD A EK +K KM++L+DIYYDALDA
Sbjct: 738 LTAGF----HASNVIGIAADSWLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALDA 793
Query: 58 PKTGNKVPVPNELRVDTFP 2
PK G+KV +PN+L+ D FP
Sbjct: 794 PKKGDKVYLPNKLKPDIFP 812
>gb|AAC62123.1| hypothetical protein [Arabidopsis thaliana]
Length = 929
Score = 280 bits (716), Expect = 4e-73
Identities = 143/259 (55%), Positives = 182/259 (70%), Gaps = 6/259 (2%)
Frame = -3
Query: 760 AQRMISSGVPLNEPYLQLCLSNLESGEKTKLKQGKIPVSESFYLMGTADPTGVLNTDEVC 581
A +MI G+PL+EP+L+ LS L EK LK GK+PV+ES+YLMGT DPTG L DEVC
Sbjct: 478 AAQMILVGIPLDEPHLKNYLSILLKTEKNDLKAGKLPVTESYYLMGTVDPTGALKEDEVC 537
Query: 580 VILDNGQISGKVLVYRNPGMHFGDVHIMEAVYVKEMEEVVGNAKYGIFFSTKGSRSAAYE 401
VIL++GQISG+VLVYRNPG+HFGD+HI++A YVK +EE VGN+K+ +FF KG RS E
Sbjct: 538 VILESGQISGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDE 597
Query: 400 MATGDFDGDMYWVSRNPELLKYFKAHKPW------TRSNSVPQSEKKNPQEFSDXXXXXX 239
+A GDFDGDMY++SRNPELL+ FK +PW ++SNS + +P+E +
Sbjct: 598 IAGGDFDGDMYFISRNPELLENFKPSEPWVSLTPPSKSNSGRAPSQLSPEELEEELFEMF 657
Query: 238 XXXXXXEARSPSFSMATAADSWLTYMDRLLILGDHCATEKKSLKDKMIQLVDIYYDALDA 59
S + AADSWLT MDR LILGD A EK +K KM++L+DIYYDALDA
Sbjct: 658 LTAGF----HASNVIGIAADSWLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALDA 713
Query: 58 PKTGNKVPVPNELRVDTFP 2
PK G+KV +PN+L+ D FP
Sbjct: 714 PKKGDKVYLPNKLKPDIFP 732
>ref|XP_002336366.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 320
Score = 276 bits (706), Expect = 6e-72
Identities = 142/257 (55%), Positives = 172/257 (66%), Gaps = 16/257 (6%)
Frame = -3
Query: 763 VAQRMISSGVPLNEPYLQLCLSNLESGEKTKLKQGKIPVSESFYLMGTADPTGVLNTDEV 584
+ MI G+PL EPYLQ LS L EK LK GKIPV ES+YLMGTADPTG+L +DEV
Sbjct: 35 IVATMIGCGIPLEEPYLQCRLSILMKEEKKSLKGGKIPVPESYYLMGTADPTGLLESDEV 94
Query: 583 CVILDNGQISGKVLVYRNPGMHFGDVHIMEAVYVKEMEEVVGNAKYGIFFSTKGSRSAAY 404
C+ILD GQISG+VL+YRNPG+HFGD+HI++A YV+E+E+ VGNAKY IFF KG RS A
Sbjct: 95 CIILDCGQISGEVLIYRNPGLHFGDIHILKATYVRELEDFVGNAKYAIFFPCKGPRSLAD 154
Query: 403 EMATGDFDGDMYWVSRNPELLKYFKAHKPWTRSNSVPQSEKKNPQEFSDXXXXXXXXXXX 224
EM+ GDFDGDM++VSRNP+LL+ FK +PWT S S P + P EFSD
Sbjct: 155 EMSGGDFDGDMFFVSRNPQLLETFKQTEPWTPSTSTPNVPNRKPSEFSDEELEVELFKLF 214
Query: 223 XEAR-SPSF---------------SMATAADSWLTYMDRLLILGDHCATEKKSLKDKMIQ 92
R PSF ++ AADSWL MDRLL LG+ CA E +K+ +
Sbjct: 215 LRNRFQPSFITKFNASKLLATFSSTVGVAADSWLAMMDRLLTLGNDCAEEIVCMKENINL 274
Query: 91 LVDIYYDALDAPKTGNK 41
L+DIYYDALDAPK G +
Sbjct: 275 LIDIYYDALDAPKKGGR 291
>ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843311|ref|XP_006475557.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X2 [Citrus
sinensis] gi|557554498|gb|ESR64512.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1013
Score = 274 bits (701), Expect = 2e-71
Identities = 143/265 (53%), Positives = 185/265 (69%), Gaps = 3/265 (1%)
Frame = -3
Query: 787 HDGLDFGFVAQRMISSGVPLNEPYLQLCLSNLESGEKTKLKQGKIPVSESFYLMGTADPT 608
+ G+D+ F + RMI SG+ L+EPYLQ LS L EK L+ GK+PV+ES+YLMGT DPT
Sbjct: 582 YGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPT 641
Query: 607 GVLNTDEVCVILDNGQISG-KVLVYRNPGMHFGDVHIMEAVYVKEMEEVVGNAKYGIFFS 431
G+L ++EVC+IL +GQ+S KVLVYRNPG+HFGD+H+++A YVKE+E+ VG +KY IFF
Sbjct: 642 GILKSNEVCIILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFP 701
Query: 430 TKGSRSAAYEMATGDFDGDMYWVSRNPELLKYFKAHKPWTRSNSVPQSEKKNPQEFSDXX 251
G RS A E+A GDFDGDMY+VSRNPELLK+FK + W S S S K P +FS
Sbjct: 702 CNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERW-MSTSKNLSANKRPIDFSLEE 760
Query: 250 XXXXXXXXXXEAR-SPSFSMATAADSWLTYMDRLLILGDHCATEKKSLKDKMIQLVDIYY 74
R PS + + AAD W MDR L LGD A EK ++K+ M++L++IYY
Sbjct: 761 LESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYY 820
Query: 73 DALDAP-KTGNKVPVPNELRVDTFP 2
DALDAP K+G KV VP +L+V+ FP
Sbjct: 821 DALDAPKKSGIKVEVPEDLKVEKFP 845
>ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843309|ref|XP_006475556.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X1 [Citrus
sinensis] gi|557554497|gb|ESR64511.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1015
Score = 274 bits (701), Expect = 2e-71
Identities = 143/265 (53%), Positives = 185/265 (69%), Gaps = 3/265 (1%)
Frame = -3
Query: 787 HDGLDFGFVAQRMISSGVPLNEPYLQLCLSNLESGEKTKLKQGKIPVSESFYLMGTADPT 608
+ G+D+ F + RMI SG+ L+EPYLQ LS L EK L+ GK+PV+ES+YLMGT DPT
Sbjct: 584 YGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPT 643
Query: 607 GVLNTDEVCVILDNGQISG-KVLVYRNPGMHFGDVHIMEAVYVKEMEEVVGNAKYGIFFS 431
G+L ++EVC+IL +GQ+S KVLVYRNPG+HFGD+H+++A YVKE+E+ VG +KY IFF
Sbjct: 644 GILKSNEVCIILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFP 703
Query: 430 TKGSRSAAYEMATGDFDGDMYWVSRNPELLKYFKAHKPWTRSNSVPQSEKKNPQEFSDXX 251
G RS A E+A GDFDGDMY+VSRNPELLK+FK + W S S S K P +FS
Sbjct: 704 CNGPRSLADEIAGGDFDGDMYFVSRNPELLKHFKESERW-MSTSKNLSANKRPIDFSLEE 762
Query: 250 XXXXXXXXXXEAR-SPSFSMATAADSWLTYMDRLLILGDHCATEKKSLKDKMIQLVDIYY 74
R PS + + AAD W MDR L LGD A EK ++K+ M++L++IYY
Sbjct: 763 LESELFKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYY 822
Query: 73 DALDAP-KTGNKVPVPNELRVDTFP 2
DALDAP K+G KV VP +L+V+ FP
Sbjct: 823 DALDAPKKSGIKVEVPEDLKVEKFP 847
>ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutrema salsugineum]
gi|557110064|gb|ESQ50361.1| hypothetical protein
EUTSA_v10001897mg [Eutrema salsugineum]
Length = 988
Score = 272 bits (695), Expect = 1e-70
Identities = 140/255 (54%), Positives = 178/255 (69%), Gaps = 2/255 (0%)
Frame = -3
Query: 760 AQRMISSGVPLNEPYLQLCLSNLESGEKTKLKQGKIPVSESFYLMGTADPTGVLNTDEVC 581
A +MI G+PL+EP+L+ LS L + EK LK G++PV+ES+YLMGT DPTG L DEVC
Sbjct: 570 AAQMILVGIPLDEPHLKDRLSILSNIEKNDLKAGRLPVTESYYLMGTVDPTGELKEDEVC 629
Query: 580 VILDNGQISGKVLVYRNPGMHFGDVHIMEAVYVKEMEEVVGNAKYGIFFSTKGSRSAAYE 401
VIL++GQISG VLVYRNPG+HFGD+H+++A YVK +EE VGN+KY +FF KG RS E
Sbjct: 630 VILESGQISGDVLVYRNPGVHFGDIHVLKATYVKALEEYVGNSKYAVFFPQKGPRSLGDE 689
Query: 400 MATGDFDGDMYWVSRNPELLKYFKAHKPWTRSNSVPQSEK-KNPQEFSDXXXXXXXXXXX 224
+A GDFDGDMY++SRNPELL+ FK +PW + +S + P +FS
Sbjct: 690 IAGGDFDGDMYFISRNPELLEQFKPSEPWVSLSPPSKSNSTRKPIDFSPEELEEELFDMF 749
Query: 223 XEARSPSFS-MATAADSWLTYMDRLLILGDHCATEKKSLKDKMIQLVDIYYDALDAPKTG 47
+AR S + + AADSWLT MDR L LGD A EK +K KM+ L+DIYYDALDA K G
Sbjct: 750 LKARFHSSNVIGMAADSWLTIMDRFLTLGDERAEEKAEMKRKMLSLIDIYYDALDAAKKG 809
Query: 46 NKVPVPNELRVDTFP 2
KV +P+ L+ D FP
Sbjct: 810 VKVSLPDALKPDIFP 824
>ref|XP_006645607.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA-dependent RNA polymerase
3-like [Oryza brachyantha]
Length = 1109
Score = 270 bits (690), Expect = 4e-70
Identities = 131/256 (51%), Positives = 182/256 (71%), Gaps = 2/256 (0%)
Frame = -3
Query: 763 VAQRMISSGVPLNEPYLQLCLSNLESGEKTKLKQGKIPVSESFYLMGTADPTGVLNTDEV 584
++ RMI SG+PL E YLQ L+ + E+ +KQGKIP+ E +YLMGT DPTG L +EV
Sbjct: 678 ISARMILSGIPLEESYLQSRLAFMARQERKGIKQGKIPIDECYYLMGTTDPTGTLGPNEV 737
Query: 583 CVILDNGQISGKVLVYRNPGMHFGDVHIMEAVYVKEME-EVVGNAKYGIFFSTKGSRSAA 407
CVIL+NGQ+ G VLVY++PG+HFGD+H+++A Y+K++E + VG +KY I F T G RS A
Sbjct: 738 CVILENGQLCGDVLVYKHPGLHFGDIHVLKATYIKDLEKKYVGYSKYAILFPTSGPRSLA 797
Query: 406 YEMATGDFDGDMYWVSRNPELLKYFKAHKPWTRSNSVPQSEKKNPQEFSDXXXXXXXXXX 227
EMA DFDGDMYWVS+NP+LL++FK +PW + + + ++K PQ+F++
Sbjct: 798 DEMANSDFDGDMYWVSKNPKLLEHFKPSEPWVETITPKRRKQKKPQDFNESKLERLLFHE 857
Query: 226 XXEAR-SPSFSMATAADSWLTYMDRLLILGDHCATEKKSLKDKMIQLVDIYYDALDAPKT 50
+ R +PS+++ TAADSWL Y+DR L G +EKK +K+KM +LVD+YYDALDAPKT
Sbjct: 858 FLKTRFTPSYALGTAADSWLAYVDRXL-TGSLDESEKKIMKEKMTKLVDLYYDALDAPKT 916
Query: 49 GNKVPVPNELRVDTFP 2
GNKV + + L +P
Sbjct: 917 GNKVNIASGLITKRYP 932