BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia26_contig00032310
         (504 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]   105   8e-21
emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]    96   6e-18
emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera]    83   4e-14
emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]    82   6e-14
emb|CAN82221.1| hypothetical protein VITISV_015226 [Vitis vinifera]    80   3e-13
gb|AAK09230.1|AC084320_17 putative copia-like retrotransposon Ho...    80   3e-13
emb|CAN68489.1| hypothetical protein VITISV_037543 [Vitis vinifera]    77   3e-12
gb|AAN04167.1| Putative copia-like retrotransposon polyprotein [...    75   1e-11
emb|CAN74951.1| hypothetical protein VITISV_030567 [Vitis vinifera]    74   2e-11
emb|CAN72498.1| hypothetical protein VITISV_010513 [Vitis vinifera]    72   8e-11
emb|CAN77295.1| hypothetical protein VITISV_005638 [Vitis vinifera]    71   1e-10
emb|CAN82380.1| hypothetical protein VITISV_021579 [Vitis vinifera]    71   2e-10
gb|ABF95616.1| retrotransposon protein, putative, Ty1-copia subc...    71   2e-10
emb|CAN79148.1| hypothetical protein VITISV_004343 [Vitis vinifera]    70   4e-10
emb|CAH67640.1| H0102C09.1 [Oryza sativa Indica Group]                 70   4e-10
emb|CAN69367.1| hypothetical protein VITISV_035520 [Vitis vinifera]    69   6e-10
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc...    69   8e-10
gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz...    67   2e-09
emb|CAN73924.1| hypothetical protein VITISV_041509 [Vitis vinifera]    67   2e-09
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group...    67   2e-09

>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
          Length = 1455

 Score =  105 bits (261), Expect = 8e-21
 Identities = 60/164 (36%), Positives = 85/164 (51%), Gaps = 1/164 (0%)
 Frame = +1

Query: 7   VTKNLLSISKFIQDNKVFIEFHASFCLVKDLITHXXXXXXXXXXXXYQPDLSHLDLQSHT 186
           +TKNLLS+SKF +DNKVF EFH+  C VKD +T             Y  D SHL L+   
Sbjct: 436 ITKNLLSVSKFAKDNKVFFEFHSDSCFVKDQVTQAVLMVGKVRDGLYAFDSSHLALR--- 492

Query: 187 LVPGKSTPQSFTIISSNNDYAAGSSTSDVPTCNKFPLWHARLGHAGPATTISVMKTLHL- 363
             P +S  +S ++++S    +  S        + F LWH RLGH   AT  +V+   ++ 
Sbjct: 493 --PTQSLSKSPSVVAS----SFSSKVCTTSLSSTFDLWHKRLGHPSAATIKNVLSKCNVA 546

Query: 364 ECNKTPPFFCDAYKLGKMHQMHFGFVVHPSTSPFEIVYTDVWGP 495
             NK    FC +  LGK+H+  F       T P E+++ D+WGP
Sbjct: 547 HINKMDSNFCSSCCLGKIHRFPFSLSHTTYTKPLELIHLDLWGP 590


>emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]
          Length = 1424

 Score = 95.5 bits (236), Expect = 6e-18
 Identities = 60/167 (35%), Positives = 77/167 (46%), Gaps = 1/167 (0%)
 Frame = +1

Query: 4   DVTKNLLSISKFIQDNKVFIEFHASFCLVKDLITHXXXXXXXXXXXXYQPDLSHLDLQSH 183
           ++TKNLLS+SKF  DN VF EFH + C VKD  T             Y  D + L L  H
Sbjct: 420 EITKNLLSVSKFAADNHVFFEFHPTSCFVKDPSTRTVLMHGQLKGGLYVFDNTQLKLPLH 479

Query: 184 TLVPGKSTPQSFTIISSNNDYAAGSSTSDVPTCNKFPLWHARLGHAGPATTISVMKTLHL 363
                 S+  + T + S       S TS       F LWH RLGH        V+   +L
Sbjct: 480 -----NSSCFASTALPSKEPTVPASPTS------PFTLWHNRLGHPSSHIVSLVLNKCNL 528

Query: 364 -ECNKTPPFFCDAYKLGKMHQMHFGFVVHPSTSPFEIVYTDVWGPAS 501
              NK P   C    +GK+H+  F       T P E+++TD+WGPAS
Sbjct: 529 PHLNKIPSLICSXCCMGKIHKSSFLHSTSSYTKPLELIHTDLWGPAS 575


>emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera]
          Length = 1402

 Score = 82.8 bits (203), Expect = 4e-14
 Identities = 49/169 (28%), Positives = 72/169 (42%), Gaps = 4/169 (2%)
 Frame = +1

Query: 7   VTKNLLSISKFIQDNKVFIEFHASFCLVKDLITHXXXXXXXXXXXXYQPDLSHLDLQSHT 186
           ++ NL+S++KF  DN   IEFH++   +KDL T             Y+            
Sbjct: 407 ISANLISVAKFCSDNNALIEFHSNGFFLKDLHTKRVLAQGKLENGLYK------------ 454

Query: 187 LVPGKSTPQSFTIISSNNDYAAGSSTSDVPTC----NKFPLWHARLGHAGPATTISVMKT 354
                     F +IS+      G +      C    NK  LWH RLGHA       +M  
Sbjct: 455 ----------FPVISNKKTAYVGITNDSTFQCSNIENKRELWHHRLGHAATDIVTRIMHN 504

Query: 355 LHLECNKTPPFFCDAYKLGKMHQMHFGFVVHPSTSPFEIVYTDVWGPAS 501
            ++ C K     C + +L K H++        ++ P E+VYTD+WGPAS
Sbjct: 505 CNVSCGKYKATVCSSCQLAKSHRLPTHLSSFHASKPLELVYTDIWGPAS 553


>emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]
          Length = 1432

 Score = 82.4 bits (202), Expect = 6e-14
 Identities = 56/166 (33%), Positives = 75/166 (45%), Gaps = 1/166 (0%)
 Frame = +1

Query: 7   VTKNLLSISKFIQDNKVFIEFHASFCLVKDLITHXXXXXXXXXXXXYQ-PDLSHLDLQSH 183
           ++ NL+S++KF  +N   IEFH++   VKDL T             Y+ P  S+L   S 
Sbjct: 410 ISANLISVAKFCSENNALIEFHSNAFFVKDLHTKMVLAQGKLENGLYKFPVFSNLKPYS- 468

Query: 184 TLVPGKSTPQSFTIISSNNDYAAGSSTSDVPTCNKFPLWHARLGHAGPATTISVMKTLHL 363
                          S NN  A  S  S     NK  LWH RLGHA       VM T ++
Sbjct: 469 ---------------SINNASAFHSQFSSTVE-NKAELWHNRLGHASFDIVSKVMNTCNV 512

Query: 364 ECNKTPPFFCDAYKLGKMHQMHFGFVVHPSTSPFEIVYTDVWGPAS 501
              K   F C   +L K H++        ++ P E+VYTD+WGPAS
Sbjct: 513 ASGKYKSFVCSDCQLAKSHRLPTQLSNFHASKPLELVYTDIWGPAS 558


>emb|CAN82221.1| hypothetical protein VITISV_015226 [Vitis vinifera]
          Length = 1007

 Score = 80.1 bits (196), Expect = 3e-13
 Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 2/168 (1%)
 Frame = +1

Query: 4   DVTKNLLSISKFIQDNKVFIEFHASFCLVKDLITHXXXXXXXXXXXXYQPDLSHLDLQSH 183
           D+  NL+S+S+F  DN  F EFH  F  VKD +T             Y+           
Sbjct: 94  DIATNLISVSQFCADNNTFFEFHPRFFFVKDQVTKKILLQGSLEHGLYR----------- 142

Query: 184 TLVPGKSTPQSFTIISSNNDYAAGSSTSDVPTCNKFPLWHARLGHAGPATTISVMKTLHL 363
              P +  P     +SS+ D ++  S + + T     LWH+RLGH        ++ + ++
Sbjct: 143 --FPARFVPSPTAFVSSSYDRSSNISLTTITT-----LWHSRLGHPADNILKHILTSCNI 195

Query: 364 --ECNKTPPFFCDAYKLGKMHQMHFGFVVHPSTSPFEIVYTDVWGPAS 501
             +C+K     C A +  K H++ F   V  ++ PF +++ D+WGP S
Sbjct: 196 SHQCHKNN--VCCACQFAKSHKLPFNVSVSRASHPFALLHADLWGPTS 241


>gb|AAK09230.1|AC084320_17 putative copia-like retrotransposon Hopscotch polyprotein [Oryza
           sativa Japonica Group]
           gi|14718304|gb|AAK72882.1|AC091123_1 putative gag-pol
           protein [Oryza sativa Japonica Group]
          Length = 1219

 Score = 80.1 bits (196), Expect = 3e-13
 Identities = 49/166 (29%), Positives = 71/166 (42%), Gaps = 2/166 (1%)
 Frame = +1

Query: 10  TKNLLSISKFIQDNKVFIEFHASFCLVKDLITHXXXXXXXXXXXXYQPDLSHLDLQSHTL 189
           +KNL+S+ + + DN  F+E H  + L+KD +T             Y             L
Sbjct: 380 SKNLISVHRLVADNYAFLEIHQKYFLIKDKVTRRTILEGPCRRDLYP------------L 427

Query: 190 VPGKSTPQSFTIISSNNDYAAGSSTSDVPTCNKFPLWHARLGHAGPATTISVMKTLHLEC 369
             G    Q F ++ S                  F  WH RLGHA     + V+    L C
Sbjct: 428 PAGDPIKQVFAVMPS------------------FERWHGRLGHASKPIVLRVINQNKLPC 469

Query: 370 NKTPPF--FCDAYKLGKMHQMHFGFVVHPSTSPFEIVYTDVWGPAS 501
           +   P    CDA + GK HQ+ F      S++P E++++DVWGPAS
Sbjct: 470 SNESPSESVCDACQQGKSHQLPFPKFFSVSSNPLELIHSDVWGPAS 515


>emb|CAN68489.1| hypothetical protein VITISV_037543 [Vitis vinifera]
          Length = 1449

 Score = 76.6 bits (187), Expect = 3e-12
 Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 2/168 (1%)
 Frame = +1

Query: 4   DVTKNLLSISKFIQDNKVFIEFHASFCLVKDLITHXXXXXXXXXXXXYQPDLSHLDLQSH 183
           D+  NL+S+S+F  DN  F EFH  F  VKD +T             Y+           
Sbjct: 442 DIATNLISVSQFCADNNTFFEFHPRFFFVKDQVTKKILLQGSLEHGLYR----------- 490

Query: 184 TLVPGKSTPQSFTIISSNNDYAAGSSTSDVPTCNKFPLWHARLGHAGPATTISVMKTLHL 363
              P +  P     +SS+ D ++  S +   T     LWH+RLGH        ++ + ++
Sbjct: 491 --FPARFVPSPAAFVSSSYDRSSNLSLTTTTT-----LWHSRLGHPADNILKHILTSCNI 543

Query: 364 --ECNKTPPFFCDAYKLGKMHQMHFGFVVHPSTSPFEIVYTDVWGPAS 501
             +C+K     C A +  K H++ F   V  ++ P  +++ D+WGP S
Sbjct: 544 SHQCHKNN--VCCACQFAKSHKLPFNVXVSRASHPLALLHADLWGPXS 589


>gb|AAN04167.1| Putative copia-like retrotransposon polyprotein [Oryza sativa
           Japonica Group] gi|31431217|gb|AAP53032.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 1042

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 48/165 (29%), Positives = 67/165 (40%), Gaps = 2/165 (1%)
 Frame = +1

Query: 13  KNLLSISKFIQDNKVFIEFHASFCLVKDLITHXXXXXXXXXXXXYQPDLSHLDLQSHTLV 192
           KNL+S +K   DN VF+E H+ + L+KD  T             Y             L 
Sbjct: 286 KNLISATKLASDNSVFVEIHSKYFLIKDRTTRSTVLKGPRRHGLYP------------LP 333

Query: 193 PGKSTPQSFTIISSNNDYAAGSSTSDVPTCNKFPLWHARLGHAGPATTISVMKTLHLEC- 369
              ST Q+F +  S                     WH+RLGH      + V+ +  L C 
Sbjct: 334 STSSTKQAFAVAPS------------------LERWHSRLGHPSIPIVMKVISSNKLPCL 375

Query: 370 -NKTPPFFCDAYKLGKMHQMHFGFVVHPSTSPFEIVYTDVWGPAS 501
                   CDA +  K HQ+ +   +  S  P E++Y+DVWGPAS
Sbjct: 376 RESNKESVCDACQKAKSHQLPYSNSMSVSNKPLELIYSDVWGPAS 420


>emb|CAN74951.1| hypothetical protein VITISV_030567 [Vitis vinifera]
          Length = 2203

 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 54/183 (29%), Positives = 77/183 (42%), Gaps = 19/183 (10%)
 Frame = +1

Query: 7   VTKNLLSISKFIQDNKVFIEFHASFCLVKDLITHXXXXXXXXXXXXYQPDLSHLDLQSHT 186
           +TKNL+S++KF QDN V +EF +  C VKD  +             YQ D+S +      
Sbjct: 331 ITKNLISVAKFTQDNDVILEFDSHCCFVKDKKSREILLQGNLKEGLYQLDISKVSSNRQF 390

Query: 187 LVPGKST----PQSFTIISSNNDYAAGSSTSDVPTCNKFP--------------LWHARL 312
           +   + T    P   T  S+ N  +   S       NK                LWH RL
Sbjct: 391 VGFSEDTNVFLPHLATTPSTVNKQSVAPSVGYSLQVNKIESTRCVEDNNTGVGHLWHQRL 450

Query: 313 GHAGPATTISVMKTLHLECN-KTPPFFCDAYKLGKMHQMHFGFVVHPSTSPFEIVYTDVW 489
           GH        V+  L ++   +    FC A  LGK  Q      ++ +  PFE+V++DVW
Sbjct: 451 GHPCNKIVSLVLDRLGIKSKLQNELNFCTACPLGKAKQFPLPTTINKTQVPFELVFSDVW 510

Query: 490 GPA 498
            PA
Sbjct: 511 EPA 513


>emb|CAN72498.1| hypothetical protein VITISV_010513 [Vitis vinifera]
          Length = 1394

 Score = 72.0 bits (175), Expect = 8e-11
 Identities = 51/170 (30%), Positives = 76/170 (44%), Gaps = 6/170 (3%)
 Frame = +1

Query: 7   VTKNLLSISKFIQDNKVFIEFHASFCLVKDLITHXXXXXXXXXXXXYQPDLSHLDLQSHT 186
           ++ NL+S+SKF  DN VF EFH++   VKD +T                          T
Sbjct: 416 LSTNLISVSKFCTDNAVFFEFHSTHFFVKDQVT------------------------KQT 451

Query: 187 LVPGKSTPQSFTIISSNNDYAAGSSTSDVPTCNKFPLWHARLGHAGPATTI------SVM 348
           L+ G      +   SS++ +A   STS VP      +WH+RLGH  PA  I      S  
Sbjct: 452 LLKGWLRDGLYEFPSSSSTHAF-VSTSSVPALTPGAIWHSRLGH--PAXPILSKALASCN 508

Query: 349 KTLHLECNKTPPFFCDAYKLGKMHQMHFGFVVHPSTSPFEIVYTDVWGPA 498
            ++  + NK  P  C    L K H + +      ++ P  +++TD+WG A
Sbjct: 509 PSVSFQINKIAP--CKICPLAKSHSLXYSLSSSHASQPLALIHTDLWGXA 556


>emb|CAN77295.1| hypothetical protein VITISV_005638 [Vitis vinifera]
          Length = 1198

 Score = 71.2 bits (173), Expect = 1e-10
 Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 10/175 (5%)
 Frame = +1

Query: 7   VTKNLLSISKFIQDNKVFIEFHASFCLVKDLITHXXXXXXXXXXXXYQ-PDLSHLDLQSH 183
           ++ NL+S++KF  DN    EF ++   VKDL T             Y+ P L+       
Sbjct: 305 ISANLISVAKFYLDNNALFEFRSNSFFVKDLHTKKVLAQGKLENGLYRFPVLN------- 357

Query: 184 TLVPGKSTPQSFT-IISSNNDYAAGSSTSDVPTCNKFPLWHARLGHAGPATTISVMKTLH 360
                 S   +F   I+S+  Y+  SS  D    NK  LWH RLGHA       +M++ +
Sbjct: 358 ------SKKVAFVGAINSSTFYSHNSSIFD----NKVKLWHHRLGHASTNIVTQIMQSCN 407

Query: 361 LE--------CNKTPPFFCDAYKLGKMHQMHFGFVVHPSTSPFEIVYTDVWGPAS 501
           +         C+      C + +L K H++     +  ++ P E+V+TD+WGPAS
Sbjct: 408 VSFEKNKNTVCSTVCSTVCSSCQLAKSHRLPTHLSLSCASKPLELVHTDLWGPAS 462


>emb|CAN82380.1| hypothetical protein VITISV_021579 [Vitis vinifera]
          Length = 828

 Score = 70.9 bits (172), Expect = 2e-10
 Identities = 51/170 (30%), Positives = 73/170 (42%), Gaps = 6/170 (3%)
 Frame = +1

Query: 7   VTKNLLSISKFIQDNKVFIEFHASFCLVKDLITHXXXXXXXXXXXXYQPDLSHLDLQSHT 186
           ++ NL+S+SKF  DN VF EFH+S+  VKD +T             Y+            
Sbjct: 314 LSTNLISVSKFCTDNVVFFEFHSSYFFVKDQVTKKILLKGWLRDGLYE------------ 361

Query: 187 LVPGKSTPQSFTIISSNNDYAAGSSTSDVPTCNKFPLWHARLGHAGPATTI------SVM 348
                S P++F   SS +D A               +WH+RLGH  PA  I      S  
Sbjct: 362 -FSSSSPPRAFVTTSSFSDGA---------------IWHSRLGH--PAAPILSKALASCN 403

Query: 349 KTLHLECNKTPPFFCDAYKLGKMHQMHFGFVVHPSTSPFEIVYTDVWGPA 498
             + L+ NK  P  C    L K H + +       + P  +++TD+WGPA
Sbjct: 404 PFVKLQINKIAP--CIICPLAKSHSLPYSLSSSHVSHPLALIHTDLWGPA 451


>gb|ABF95616.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1241

 Score = 70.9 bits (172), Expect = 2e-10
 Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 2/164 (1%)
 Frame = +1

Query: 13  KNLLSISKFIQDNKVFIEFHASFCLVKDLITHXXXXXXXXXXXXYQPDLSHLDLQSHTLV 192
           KNL+S  +   DN  F+E H+++ L+KD +T                         +T++
Sbjct: 377 KNLISAHRLAMDNFAFLEVHSNYFLIKDRVTR------------------------NTIL 412

Query: 193 PGKSTPQSFTIISSNNDYAAGSSTSDVPTCNKFPLWHARLGHAGPATTISVMKTLHLECN 372
            G+   + +++ +S       ++T        F  WH+RLGH        V+   +L C+
Sbjct: 413 KGRCRRRLYSLPTSPAKQVHAATTPS------FSRWHSRLGHPAVPIVTRVLSKNNLPCS 466

Query: 373 KTP--PFFCDAYKLGKMHQMHFGFVVHPSTSPFEIVYTDVWGPA 498
                   CDA + GK HQ+ +      S+ P E++++DVWGPA
Sbjct: 467 TVANKDSICDACQKGKSHQLPYPKSSSVSSQPLELIFSDVWGPA 510


>emb|CAN79148.1| hypothetical protein VITISV_004343 [Vitis vinifera]
          Length = 1334

 Score = 69.7 bits (169), Expect = 4e-10
 Identities = 50/170 (29%), Positives = 73/170 (42%), Gaps = 6/170 (3%)
 Frame = +1

Query: 7   VTKNLLSISKFIQDNKVFIEFHASFCLVKDLITHXXXXXXXXXXXXYQPDLSHLDLQSHT 186
           ++ NL+S+SKF  DN VF EFH+S   VKD +T             Y+            
Sbjct: 411 LSTNLISVSKFCTDNAVFFEFHSSCFFVKDQVTKKILLKGWLRDGLYE------------ 458

Query: 187 LVPGKSTPQSFTIISSNNDYAAGSSTSDVPTCNKFPLWHARLGHAGPATTI------SVM 348
                S P++F    S +D A               +WH+RLGH  PA  I      S  
Sbjct: 459 -FSSSSPPRAFVTTGSFSDGA---------------IWHSRLGH--PAVPILSKALASCN 500

Query: 349 KTLHLECNKTPPFFCDAYKLGKMHQMHFGFVVHPSTSPFEIVYTDVWGPA 498
            ++ L+ NK  P  C    L K H + +      ++ P  +++TD+WGPA
Sbjct: 501 PSVTLQINKIAP--CIICPLAKSHSLPYSLSSSHASHPLALIHTDLWGPA 548


>emb|CAH67640.1| H0102C09.1 [Oryza sativa Indica Group]
          Length = 1825

 Score = 69.7 bits (169), Expect = 4e-10
 Identities = 47/164 (28%), Positives = 64/164 (39%), Gaps = 2/164 (1%)
 Frame = +1

Query: 13  KNLLSISKFIQDNKVFIEFHASFCLVKDLITHXXXXXXXXXXXXYQPDLSHLDLQSHTLV 192
           KNL+S  K   DN VF+E H+   L+KD  T             Y              V
Sbjct: 518 KNLISAHKLAADNSVFLEIHSKHFLIKDQATRRTVLKGRRQKGLYP-------------V 564

Query: 193 PGKSTPQSFTIISSNNDYAAGSSTSDVPTCNKFPLWHARLGHAGPATTISVMKTLHLEC- 369
           P  S P S  ++ +                  F  WH+RLGH+       V+    L C 
Sbjct: 565 PSASPPSSAKVVCA--------------VTPSFERWHSRLGHSSAPIISRVISKNKLPCL 610

Query: 370 -NKTPPFFCDAYKLGKMHQMHFGFVVHPSTSPFEIVYTDVWGPA 498
                   CDA    K HQ+ +   +  S+ P E+V++DVWGPA
Sbjct: 611 DESNKESVCDACLKAKSHQLPYSKSLSISSHPLELVFSDVWGPA 654


>emb|CAN69367.1| hypothetical protein VITISV_035520 [Vitis vinifera]
          Length = 1083

 Score = 68.9 bits (167), Expect = 6e-10
 Identities = 49/169 (28%), Positives = 75/169 (44%), Gaps = 5/169 (2%)
 Frame = +1

Query: 7   VTKNLLSISKFIQDNKVFIEFHASFCLVKDLITHXXXXXXXXXXXXYQ-PDLSHLDLQSH 183
           ++ NL+S+ KF  DN   IEF ++   VKDL T             Y+ P L++      
Sbjct: 305 ISANLISVVKFCSDNNSLIEFRSNSFFVKDLHTKKVLAQGKLENGLYRFPVLNN----KK 360

Query: 184 TLVPGKSTPQSFTIISSNNDYAAGSSTSDVPTCNKFPLWHARLGHAGPATTISVMKTLHL 363
               G +   +F        Y+  SS  D    NK  LWH RLGHA       +M++ ++
Sbjct: 361 VAFVGATNSSTF--------YSHNSSIFD----NKVKLWHYRLGHASTDIVTQIMQSCNV 408

Query: 364 ECNKTPPFFCDAY----KLGKMHQMHFGFVVHPSTSPFEIVYTDVWGPA 498
              K     C       +L K H++     +  ++ P E+V+TD+WGPA
Sbjct: 409 SFEKNKNXVCSTXCSSCQLAKSHRLPTHLSLSCASKPLELVHTDLWGPA 457


>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1460

 Score = 68.6 bits (166), Expect = 8e-10
 Identities = 45/163 (27%), Positives = 66/163 (40%), Gaps = 1/163 (0%)
 Frame = +1

Query: 13  KNLLSISKFIQDNKVFIEFHASFCLVKDLITHXXXXXXXXXXXXYQPDLSHLDLQSHTLV 192
           KNL+S+ + + DN  F+E H  +  +KD IT             Y              +
Sbjct: 388 KNLVSVHRLVNDNSAFLELHRDYFFLKDQITRKTLLKGRSWRRLYP-------------L 434

Query: 193 PGKSTPQSFTIISSNNDYAAGSSTSDVPTCNKFPLWHARLGHAGPATTISVMKTLHLECN 372
           P  S  Q+++ I  + D                  WH RLGH    T   V+    L C+
Sbjct: 435 PHSSLKQAYSAIKLSLDR-----------------WHHRLGHPSITTVKQVVNKFSLPCS 477

Query: 373 K-TPPFFCDAYKLGKMHQMHFGFVVHPSTSPFEIVYTDVWGPA 498
             +    C+A +  K HQ+ F      S  P E+V++DVWGPA
Sbjct: 478 DLSSESVCNACQQAKSHQLPFPISSSVSKHPLELVFSDVWGPA 520


>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
           Group]
          Length = 1399

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 42/164 (25%), Positives = 73/164 (44%), Gaps = 2/164 (1%)
 Frame = +1

Query: 13  KNLLSISKFIQDNKVFIEFHASFCLVKDLITHXXXXXXXXXXXXYQPDLSHLDLQSHTLV 192
           KNL+S  +   DN  F+E H+++ L+KD  T                         +T++
Sbjct: 355 KNLISAHRLAMDNFAFLEVHSNYFLIKDRATR------------------------NTIL 390

Query: 193 PGKSTPQSFTIISSNNDYAAGSSTSDVPTCNKFPLWHARLGHAGPATTISVMKTLHLECN 372
            G+   + +++ +S       ++T        F  WH+RLGH        V+   +L C+
Sbjct: 391 KGRCRRRLYSLPTSPAKQVHAATTPS------FSRWHSRLGHPAVPIVTRVLSKNNLPCS 444

Query: 373 KTP--PFFCDAYKLGKMHQMHFGFVVHPSTSPFEIVYTDVWGPA 498
                   CDA + GK HQ+ +      S+ P E+++++VWGPA
Sbjct: 445 TVANKDSICDACQKGKSHQLPYPKSSSVSSQPLELIFSNVWGPA 488


>emb|CAN73924.1| hypothetical protein VITISV_041509 [Vitis vinifera]
          Length = 1434

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 49/170 (28%), Positives = 72/170 (42%), Gaps = 6/170 (3%)
 Frame = +1

Query: 7   VTKNLLSISKFIQDNKVFIEFHASFCLVKDLITHXXXXXXXXXXXXYQPDLSHLDLQSHT 186
           ++ NL+S+SKF  DN VF E H+S   VKD +T             Y+            
Sbjct: 411 LSTNLISVSKFXTDNAVFFEXHSSCFFVKDQVTKKILLKGWLRDGLYE------------ 458

Query: 187 LVPGKSTPQSFTIISSNNDYAAGSSTSDVPTCNKFPLWHARLGHAGPATTI------SVM 348
                S P++F    S +D A               +WH+RLGH  PA  I      S  
Sbjct: 459 -FSSSSPPRAFVTTGSFSDGA---------------IWHSRLGH--PAVPILSKALASCN 500

Query: 349 KTLHLECNKTPPFFCDAYKLGKMHQMHFGFVVHPSTSPFEIVYTDVWGPA 498
            ++ L+ NK  P  C    L K H + +      ++ P  +++TD+WGPA
Sbjct: 501 PSVTLQINKIAP--CIICPLAKSHSLPYSLSSSHASHPLALIHTDLWGPA 548


>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|108708884|gb|ABF96679.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 1437

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 48/164 (29%), Positives = 67/164 (40%), Gaps = 2/164 (1%)
 Frame = +1

Query: 13  KNLLSISKFIQDNKVFIEFHASFCLVKDLITHXXXXXXXXXXXXYQPDLSHLDLQSHTLV 192
           KNL+S  K   DN  FIE +  F  +KDL                            TL+
Sbjct: 386 KNLVSAYKLTSDNLAFIELYRKFFFIKDLAMR------------------------RTLL 421

Query: 193 PGKSTPQSFTIISSNNDYAAGSSTSDVPTCNKFPLWHARLGHAGPATTISVMKTLHLECN 372
            G+     + + S ++ +        V T   F  WH+RLGH        V+K+ +L C 
Sbjct: 422 RGRCHKGLYALPSPSSHHHQVKQVYGV-TKPSFERWHSRLGHPSYTVVEKVIKSQNLPCL 480

Query: 373 KTPP--FFCDAYKLGKMHQMHFGFVVHPSTSPFEIVYTDVWGPA 498
                   CDA +  K HQ+ F      S  P E+V++DVWGPA
Sbjct: 481 DVSEQVSVCDACQKAKSHQLSFPKSTSESKYPLELVFSDVWGPA 524