BLASTX nr result

ID: Rehmannia26_contig00031500 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia26_contig00031500
         (400 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006485558.1| PREDICTED: uncharacterized protein LOC102629...    60   3e-07
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta...    58   1e-06
gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptas...    57   2e-06
ref|XP_006478464.1| PREDICTED: TMV resistance protein N-like [Ci...    57   3e-06
ref|XP_006485449.1| PREDICTED: uncharacterized protein LOC102621...    56   4e-06

>ref|XP_006485558.1| PREDICTED: uncharacterized protein LOC102629971 [Citrus sinensis]
          Length = 227

 Score = 60.1 bits (144), Expect = 3e-07
 Identities = 27/62 (43%), Positives = 38/62 (61%)
 Frame = +1

Query: 184 PSEKRGGIERTANSCQGFKNFIRGINMKNIKSDGYPFTWSNNRDGEGFVKECLDKFFASP 363
           P EK  G ER  N    F+  +R  ++ ++   GYPFTWSN R G GFV+E LD+F ++ 
Sbjct: 22  PCEKSRGNERHPNLIHDFREALRDCDLLDVGFKGYPFTWSNGRYGPGFVEERLDRFMSNN 81

Query: 364 SW 369
           +W
Sbjct: 82  AW 83


>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1715

 Score = 57.8 bits (138), Expect = 1e-06
 Identities = 26/66 (39%), Positives = 38/66 (57%)
 Frame = +1

Query: 187 SEKRGGIERTANSCQGFKNFIRGINMKNIKSDGYPFTWSNNRDGEGFVKECLDKFFASPS 366
           +EK+GG  R+  S Q F N I   NMK++KS G P++W   R  E  ++ CLD+ F +  
Sbjct: 506 NEKKGGRRRSIGSLQNFTNMINCCNMKDLKSKGNPYSWVGKRQNE-TIESCLDRVFINSD 564

Query: 367 WTLNHP 384
           W  + P
Sbjct: 565 WQASFP 570


>gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
           [Medicago truncatula]
          Length = 1296

 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 32/111 (28%), Positives = 51/111 (45%)
 Frame = +1

Query: 67  VYMSVDGGIRRDQWGYLVQASEXXXXXXXXXXXXXXXSCPSEKRGGIERTANSCQGFKNF 246
           +Y S +  +R + W YLV  ++                 PSE+RGG     N    F NF
Sbjct: 105 IYASPNYSMRPNLWNYLVNINDTITGPWMLIGDFNETHLPSEQRGGTFHH-NRAATFSNF 163

Query: 247 IRGINMKNIKSDGYPFTWSNNRDGEGFVKECLDKFFASPSWTLNHPRATVQ 399
           +   N+ ++ + G  FTW  N +G   + + LD+  A+  W L+ P A V+
Sbjct: 164 MNNCNLLDLTTTGGRFTWHKNNNGIRILSKKLDRGMANVDWRLSFPEAFVE 214


>ref|XP_006478464.1| PREDICTED: TMV resistance protein N-like [Citrus sinensis]
          Length = 1442

 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 23/61 (37%), Positives = 40/61 (65%)
 Frame = +1

Query: 187  SEKRGGIERTANSCQGFKNFIRGINMKNIKSDGYPFTWSNNRDGEGFVKECLDKFFASPS 366
            +EK GG++R+ ++   F+  +R  ++ ++ S GYPFTWSN + G   ++E LD+FF +  
Sbjct: 1250 NEKIGGLDRSVDAVGEFREAVRDCSLIDLGSRGYPFTWSNRQFGPKLIEEKLDRFFCNQE 1309

Query: 367  W 369
            W
Sbjct: 1310 W 1310


>ref|XP_006485449.1| PREDICTED: uncharacterized protein LOC102621413 [Citrus sinensis]
          Length = 2303

 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 24/63 (38%), Positives = 38/63 (60%)
 Frame = +1

Query: 190 EKRGGIERTANSCQGFKNFIRGINMKNIKSDGYPFTWSNNRDGEGFVKECLDKFFASPSW 369
           EK GG E+  +    F+  ++  N+ ++   G+PFTWSN R G+ F++E LD+F  S  W
Sbjct: 108 EKSGGNEKNIDMVVQFREAVQACNLVDVGYRGHPFTWSNRRYGQHFIEERLDRFLCSNDW 167

Query: 370 TLN 378
           + N
Sbjct: 168 SEN 170


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