BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia26_contig00030670
         (451 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_006576518.1| replication protein 1a [Amazon lily mild mot...   167   1e-39
gb|AHJ89005.1| putative replicase [Cassava Ivorian bacilliform v...   135   6e-30
ref|NP_619770.1| replicase [Pelargonium zonate spot virus] gi|82...    70   2e-10
gb|AFU72534.1| 1a protein [Pelargonium zonate spot virus]              70   4e-10

>ref|YP_006576518.1| replication protein 1a [Amazon lily mild mottle virus]
           gi|398650492|dbj|BAM34543.1| replication protein 1a
           [Amazon lily mild mottle virus]
          Length = 945

 Score =  167 bits (424), Expect = 1e-39
 Identities = 87/149 (58%), Positives = 104/149 (69%)
 Frame = +2

Query: 5   GSKSWEDDAYSVXXXXXXXXXXXXSKTKEKLKEKDIQDEKPDVEGGKPVHSQPNTHVVGD 184
           GSKSW DDAY++            SK KE   EK+ + E+      K   +         
Sbjct: 472 GSKSWSDDAYNILNNNLLLCALALSKCKEHKPEKEKEKEEVLAVPSKATPTLVEVKEEEK 531

Query: 185 VSPKVVIKDTDSRPGRMELRAQAKDEFVAYTRKLHSNAAANLARLWKLCGGSGSDNFVST 364
           +   ++  D   RPGRME+RAQAKDEFVAYTRK++SNAAANL+RLWKLCGGSGSDNFVST
Sbjct: 532 LDTPIIAVD---RPGRMEIRAQAKDEFVAYTRKINSNAAANLSRLWKLCGGSGSDNFVST 588

Query: 365 NCLNVLKLGDSLINFHKRSGWIFETNETY 451
           NCL+VLKLGDSLINFHKRSG+I++TNETY
Sbjct: 589 NCLDVLKLGDSLINFHKRSGFIYKTNETY 617


>gb|AHJ89005.1| putative replicase [Cassava Ivorian bacilliform virus]
          Length = 943

 Score =  135 bits (340), Expect = 6e-30
 Identities = 76/153 (49%), Positives = 90/153 (58%), Gaps = 3/153 (1%)
 Frame = +2

Query: 2   SGSKSWEDDAYSVXXXXXXXXXXXXSK---TKEKLKEKDIQDEKPDVEGGKPVHSQPNTH 172
           SG  +W + A +             SK   + E  K + + D +P+V     + S     
Sbjct: 469 SGCTNWTETATNCLNNSLLLCALALSKAPLSPENPKPETVADPRPEVSSDDKIES----- 523

Query: 173 VVGDVSPKVVIKDTDSRPGRMELRAQAKDEFVAYTRKLHSNAAANLARLWKLCGGSGSDN 352
                   V  KD     GRMELRAQAK EFVAYTR L+SNAA+NL RLW+LCGG GSDN
Sbjct: 524 --------VETKDAVKVDGRMELRAQAKAEFVAYTRTLNSNAASNLKRLWQLCGGDGSDN 575

Query: 353 FVSTNCLNVLKLGDSLINFHKRSGWIFETNETY 451
           FVST CLNVLKLGDS INFHK SGWIF T+ +Y
Sbjct: 576 FVSTECLNVLKLGDSQINFHKSSGWIFPTSTSY 608


>ref|NP_619770.1| replicase [Pelargonium zonate spot virus]
           gi|82004832|sp|Q9DUT3.1|1A_PZSVT RecName:
           Full=Replication protein 1a; Includes: RecName:
           Full=ATP-dependent helicase; Includes: RecName:
           Full=Methyltransferase gi|10185102|emb|CAC08526.1|
           unnamed protein product [Pelargonium zonate spot virus]
          Length = 962

 Score = 70.5 bits (171), Expect = 2e-10
 Identities = 40/114 (35%), Positives = 57/114 (50%), Gaps = 2/114 (1%)
 Frame = +2

Query: 116 DEKPDVEGGKPVHSQPNTHVVGDVSPKVVIKDTDSRPGRMELRAQAKDEFVAYTRKLHSN 295
           DE+P      P    P+           V   ++   GR+ +R +A  E+  Y  KL  N
Sbjct: 538 DERPAGTVSGPTIQAPSV-----TQENTVTSLSEPLDGRLAVRLEAMKEYKRYLLKLQKN 592

Query: 296 AAANLARLWKLCGG-SGSDNFVSTNCLNVLKLGDSLINFHKR-SGWIFETNETY 451
             +NLA LW LCGG S S+N +ST  L +++  DSL+N HK   GW+F  +  Y
Sbjct: 593 TESNLAGLWSLCGGTSDSNNLISTEVLRIMRQSDSLVNLHKADGGWLFPNDFEY 646


>gb|AFU72534.1| 1a protein [Pelargonium zonate spot virus]
          Length = 962

 Score = 69.7 bits (169), Expect = 4e-10
 Identities = 34/77 (44%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
 Frame = +2

Query: 227 GRMELRAQAKDEFVAYTRKLHSNAAANLARLWKLCGG-SGSDNFVSTNCLNVLKLGDSLI 403
           GR+ +R +A  E+  Y  KL  N  +NLA LW LCGG S S+N +ST  L +++  DSL+
Sbjct: 570 GRLAVRLEAMKEYKRYLLKLQRNTESNLAGLWSLCGGTSDSNNLISTEVLRIMRQSDSLV 629

Query: 404 NFHKRSG-WIFETNETY 451
           N HK  G W+F  +  Y
Sbjct: 630 NLHKADGSWLFPNDFEY 646