BLASTX nr result
ID: Rehmannia26_contig00028725
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia26_contig00028725
(1004 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD17398.1| putative non-LTR retroelement reverse transcripta... 87 1e-14
ref|NP_178368.1| RNase H domain-containing protein [Arabidopsis ... 84 7e-14
ref|XP_002865522.1| hypothetical protein ARALYDRAFT_917523 [Arab... 80 1e-12
gb|EMJ07893.1| hypothetical protein PRUPE_ppa024911mg [Prunus pe... 79 2e-12
gb|AAF79804.1|AC020646_27 T32E20.19 [Arabidopsis thaliana] 78 5e-12
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 77 8e-12
ref|NP_189164.1| ribonuclease H-like protein [Arabidopsis thalia... 77 8e-12
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 77 1e-11
emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga... 75 3e-11
ref|NP_194638.1| ribonuclease H-like protein [Arabidopsis thalia... 74 7e-11
emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid... 74 7e-11
dbj|BAE79382.1| unnamed protein product [Ipomoea batatas] 72 3e-10
dbj|BAE79384.1| unnamed protein product [Ipomoea batatas] 72 4e-10
dbj|BAE79385.1| unnamed protein product [Ipomoea batatas] 72 4e-10
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 71 6e-10
emb|CAB75484.1| putative protein [Arabidopsis thaliana] 71 6e-10
ref|NP_187562.1| RNase H domain-containing protein [Arabidopsis ... 71 8e-10
gb|AFK38936.1| unknown [Medicago truncatula] 71 8e-10
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 71 8e-10
ref|XP_006487438.1| PREDICTED: putative ribonuclease H protein A... 70 1e-09
>gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1225
Score = 87.0 bits (214), Expect = 1e-14
Identities = 45/141 (31%), Positives = 77/141 (54%), Gaps = 6/141 (4%)
Frame = +3
Query: 3 QHFIWRCLNKAIPTRVHLSRRGVQLDTICAMCGLQEETMEHLFFHCPRAQKTWKLAPVEW 182
+HF W+CL+ + T L R + + +C CG +EE++ HL F CP +++ W L+P+
Sbjct: 936 KHFEWQCLSGCLATNQRLFSRHIGTEKVCPRCGAEEESINHLLFLCPPSRQIWALSPIPS 995
Query: 183 N------NTSKENFTFKGWWQDLCSIKENSYAEDRIQLSVYLLWWLWKTRNLWIFQKCVT 344
+ N+ NF F L KE AED +++ ++LW++WK+RN +IF+ +
Sbjct: 996 SEYIFPRNSLFYNFDFL-----LSRGKEFDIAEDIMEIFPWILWYIWKSRNRFIFENVIE 1050
Query: 345 NEKDLVDGAIWEWQEMLSINS 407
+ + ++D AI E NS
Sbjct: 1051 SPQVILDFAIQEANVWKQANS 1071
>ref|NP_178368.1| RNase H domain-containing protein [Arabidopsis thaliana]
gi|3184275|gb|AAC18922.1| putative reverse transcriptase
[Arabidopsis thaliana] gi|330250513|gb|AEC05607.1| RNase
H domain-containing protein [Arabidopsis thaliana]
Length = 365
Score = 84.3 bits (207), Expect = 7e-14
Identities = 45/149 (30%), Positives = 77/149 (51%), Gaps = 7/149 (4%)
Frame = +3
Query: 3 QHFIWRCLNKAIPTRVHLSRRGVQLDTICAMCGLQEETMEHLFFHCPRAQKTWKLAPVEW 182
+HF+WRC+ A+ T L R + D IC C ++EET+ H+ F+CP Q W+ A +
Sbjct: 47 KHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQSVWRSANIII 106
Query: 183 NNTSKENFTFKGWWQDLCSIK--ENSYAEDRIQLSVYLLWWLWKTRNLWIF-QKCVTNE- 350
N +F+ L + + + + DR L +++W LWK+RN+++F QKC + +
Sbjct: 107 GNQWGPPSSFEDNLNRLIQLSKTQTTNSLDRF-LPFWIMWRLWKSRNVFLFQQKCQSPDY 165
Query: 351 ---KDLVDGAIWEWQEMLSINSSGHIGRN 428
K + D W + N++ H+ N
Sbjct: 166 EARKGIQDATEWLNANETTENTNVHVATN 194
>ref|XP_002865522.1| hypothetical protein ARALYDRAFT_917523 [Arabidopsis lyrata subsp.
lyrata] gi|297311357|gb|EFH41781.1| hypothetical protein
ARALYDRAFT_917523 [Arabidopsis lyrata subsp. lyrata]
Length = 352
Score = 80.5 bits (197), Expect = 1e-12
Identities = 43/139 (30%), Positives = 72/139 (51%), Gaps = 1/139 (0%)
Frame = +3
Query: 3 QHFIWRCLNKAIPTRVHLSRRGVQLDTICAMCGLQEETMEHLFFHCPRAQKTWKLAPVEW 182
+HF+WR +KAI +L RR + ++ C+ C + ET +H F CP + W+ A +
Sbjct: 34 KHFLWRYASKAIGIAENLRRRNMNVNPYCSRCCNELETNDHTLFSCPSIRPIWRAAGIPT 93
Query: 183 NNTSKENFTFKGWWQDLCSIKENSYAEDRIQ-LSVYLLWWLWKTRNLWIFQKCVTNEKDL 359
+ + F+G + L + +N + + + L +LLW +WKTRN IF VT +D+
Sbjct: 94 QDLWDRDKPFEGKIRFLLDLHDNKHIDKVCRYLPFWLLWRIWKTRNDLIFNHKVTKGEDI 153
Query: 360 VDGAIWEWQEMLSINSSGH 416
V A+ + +E L H
Sbjct: 154 VGQALIDTKEWLDCQDRTH 172
>gb|EMJ07893.1| hypothetical protein PRUPE_ppa024911mg [Prunus persica]
Length = 378
Score = 79.3 bits (194), Expect = 2e-12
Identities = 45/144 (31%), Positives = 70/144 (48%), Gaps = 7/144 (4%)
Frame = +3
Query: 3 QHFIWRCLNKAIPTRVHLSRRGVQLDTICAMCGLQEETMEHLFFHCPRAQKTWKLAPVEW 182
Q FIWRC + R +L RR V ++ C +CG +T HLFF C A+ W +P
Sbjct: 222 QMFIWRCYRNVLAVRENLRRRRVDVEADCLLCGNNGKTEVHLFFRCEIARLFWFASPSHL 281
Query: 183 NNTSKENFTFKGWWQDLCSIKENSYAE---DRIQLSVYLLWWLWKTRNLWIFQKCVTNEK 353
+ E F W+ C +++ + E + +Q+ + LW +WK RN +F++ +
Sbjct: 282 DVHGVEGEDFLSCWE--CLLQKFAQVEKMDEILQIVAFGLWRIWKWRNAVVFERQSLDPM 339
Query: 354 DLVDGAIW----EWQEMLSINSSG 413
DL G W EW E+L + G
Sbjct: 340 DLGRGVGWVIRTEWGELLRASGRG 363
>gb|AAF79804.1|AC020646_27 T32E20.19 [Arabidopsis thaliana]
Length = 957
Score = 78.2 bits (191), Expect = 5e-12
Identities = 56/213 (26%), Positives = 97/213 (45%), Gaps = 9/213 (4%)
Frame = +3
Query: 3 QHFIWRCLNKAIPTRVHLSRRGVQLDTICAMCGLQEETMEHLFFHCPRAQKTWKLAPVEW 182
++ +WR + +A+PT L ++G+ +D IC+ C L+EE++ H+ F+ P A TWKLA + +
Sbjct: 753 KYMLWRTIPEALPTCARLVKKGMNIDPICSRCSLEEESICHVLFNYPYATTTWKLAKLSY 812
Query: 183 ------NNTSKENFTFKGWWQDLCSIKENSYAEDRIQLSVYLLWWLWKTRNLWI---FQK 335
+N +EN + + SI N+ E + L +L++ +WK RN ++ F+K
Sbjct: 813 LSGHTFSNDVEENISVL-----IDSISNNNLTEQQKLLPFWLIFRIWKARNNYVFNKFRK 867
Query: 336 CVTNEKDLVDGAIWEWQEMLSINSSGHIGRNKQXXXXXXXXXXXXXXXXXXXXXCVAISA 515
C + + + EW IN G N C +A
Sbjct: 868 CSSKVVSQSEVDVNEW----IINMCERRG-NTATTRPPLSQKASWTKPTVSFVKC-NFNA 921
Query: 516 VIGDGCNNCYGGWIMNENMHNLKAWSTSRNDNL 614
+ GGWI+ + KAW +S D++
Sbjct: 922 GLHKNTTQSTGGWIIRDPEGKEKAWGSSILDHV 954
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana]
Length = 1662
Score = 77.4 bits (189), Expect = 8e-12
Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Frame = +3
Query: 3 QHFIWRCLNKAIPTRVHLSRRGVQLDTICAMCGLQEETMEHLFFHCPRAQKTWKLAPVEW 182
++ +WR ++KA+PTR L RG+ +D C C +EET+ H+ F CP A W L+ W
Sbjct: 1372 KYMLWRTISKALPTRSRLLTRGMDIDPHCPRCPTEEETINHVLFTCPYAASIWGLSNFPW 1431
Query: 183 ------NNTSKENFTFKGWWQDLCSIKENSYAEDRIQLSVYLLWWLWKTRNLWIFQK 335
+ ++EN +F + S N+ ++ +L+W LWK RN +F K
Sbjct: 1432 LPGHTFSQDTEENISFL-----INSFSNNTLNTEQRLAPFWLIWRLWKARNNLVFNK 1483
>ref|NP_189164.1| ribonuclease H-like protein [Arabidopsis thaliana]
gi|9294184|dbj|BAB02086.1| reverse transcriptase-like
protein [Arabidopsis thaliana]
gi|332643482|gb|AEE77003.1| ribonuclease H-like protein
[Arabidopsis thaliana]
Length = 343
Score = 77.4 bits (189), Expect = 8e-12
Identities = 68/320 (21%), Positives = 129/320 (40%), Gaps = 13/320 (4%)
Frame = +3
Query: 3 QHFIWRCLNKAIPTRVHLSRRGVQLDTICAMCGLQEETMEHLFFHCPRAQKTWKLAPVEW 182
+HF+W+ L+ A+ T +L RR ++ C C ++ET +HLFF C AQ+ W+ + +
Sbjct: 28 KHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQQVWRASGIPH 87
Query: 183 NNTSKENFTFKGWWQDLCSIKENSYAEDRIQLSVYLLWWLWKTRNLWIFQKCVTNEKDLV 362
T + + L S + L++++LW LWK+RN +FQ+ + ++ +
Sbjct: 88 QELRTTGITMETKMELLLSSCLANRQPQLFNLAIWILWRLWKSRNQLVFQQKSISWQNTL 147
Query: 363 DGA---IWEWQE----MLSINSSGHIGRNKQXXXXXXXXXXXXXXXXXXXXXCVAISAVI 521
A + EW++ + S+N H R++Q
Sbjct: 148 QRARNDVQEWEDTNTYVQSLNQQVHSSRHQQPTMARTKWQRPPSTWIKYN-----YDGAF 202
Query: 522 GDGCNNCYGGWIM-NENMHNLKAWSTSRNDNLNSVEAMLFGIRLIMISAFESGIKNVTIC 698
N GW+M +EN + + + +S+E+ + + M A+ G + V
Sbjct: 203 NHQTRNAKAGWLMRDENGVYMGSGQAIGSTTSDSLESEFQALIIAMQHAWSQGYRKVIFE 262
Query: 699 LEDENLIQRLNNRNTQEWNMTPLIEDIFLLWYLFDACYFSISDRRWIANCNR-----LAL 863
+ + + + +NN + E F +A + +W+ N LA
Sbjct: 263 GDSKQVEELMNNEKLNFGRFNWIREGRFWQKRFEEAVF------KWVPRTNNQPADILAK 316
Query: 864 LALDGNSDMNWLNQFPAWLT 923
L N + PA++T
Sbjct: 317 HHLQPNQSFKFHYYVPAFIT 336
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 76.6 bits (187), Expect = 1e-11
Identities = 38/130 (29%), Positives = 64/130 (49%)
Frame = +3
Query: 9 FIWRCLNKAIPTRVHLSRRGVQLDTICAMCGLQEETMEHLFFHCPRAQKTWKLAPVEWNN 188
F+W+ L+ AIP L RG++ D C MC + ET+ H+ F CP A++ W + +
Sbjct: 1057 FLWKALHGAIPVEDRLRTRGIRSDDGCLMCDTENETINHILFECPLARQVWAITHLSSAG 1116
Query: 189 TSKENFTFKGWWQDLCSIKENSYAEDRIQLSVYLLWWLWKTRNLWIFQKCVTNEKDLVDG 368
+ N + + + ++N +S ++LW+LWK RN +F+ + LVD
Sbjct: 1117 SEFSNSVYTNMSRLIDLTQQNDLPHHLRFVSPWILWFLWKNRNALLFEGKGSITTTLVDK 1176
Query: 369 AIWEWQEMLS 398
A + E S
Sbjct: 1177 AYEAYHEWFS 1186
>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1369
Score = 75.5 bits (184), Expect = 3e-11
Identities = 65/316 (20%), Positives = 135/316 (42%), Gaps = 14/316 (4%)
Frame = +3
Query: 9 FIWRCLNKAIPTRVHLSRRGVQLDTICAMCGLQEETMEHLFFHCPRAQKTWKLAPVEWNN 188
F W+ ++ + ++ +RG+ +D C CG +EET EHL + C + + W ++P+ +
Sbjct: 1066 FSWKAIHNGLAVYTNMRKRGMNIDGACPRCGEKEETTEHLIWGCDESSRAWYISPLRIHT 1125
Query: 189 TSKENFTFKGWWQDLCSIKENSYAEDRIQLSVYLLWWLWKTRNLWIFQKCVTNEKDLVDG 368
+ E +F+ W + L +++ + L + W +W RN W+F+K +++V+
Sbjct: 1126 GNIEAGSFRIWVESLLDTHKDT---EWWALFWMICWNIWLGRNKWVFEKKKLAFQEVVER 1182
Query: 369 A---IWEWQEMLSINSSGHIGRNKQXXXXXXXXXXXXXXXXXXXXXCVAI--SAVIGDG- 530
A + E++E + S + V I V+ D
Sbjct: 1183 AVRGVMEFEEECAHTSPVETLNTHENGWSVPPVGMVKLNVDAAVFKHVGIGMGGVVRDAE 1242
Query: 531 ----CNNCYGGWIMNENMHNLKAWSTSRNDNLNSVEAMLFGIRLIMISAFESGIKNVTIC 698
C GGW M + + ++ +G+++ A+E+G +N+ +
Sbjct: 1243 GDVLLATCCGGWAMED-------------PAMAEACSLRYGLKV----AYEAGFRNLVVE 1285
Query: 699 LEDENLIQRLNNRNTQEWNMTPLIEDIFLLWYLFDACYFSISDRRWIANCNRLA-LLALD 875
++ + L +L + + +++DI YL C ++ +CN++A LLA
Sbjct: 1286 MDCKKLFLQLRGKASDVTPFGRVVDDIL---YLASKC-SNVVFEHVKRHCNKVAHLLAQM 1341
Query: 876 GNSDMN---WLNQFPA 914
+ M WL ++P+
Sbjct: 1342 CKNAMEKRVWLEEYPS 1357
>ref|NP_194638.1| ribonuclease H-like protein [Arabidopsis thaliana]
gi|4972055|emb|CAB43923.1| putative protein [Arabidopsis
thaliana] gi|7269807|emb|CAB79667.1| putative protein
[Arabidopsis thaliana] gi|67633766|gb|AAY78807.1|
putative reverse transcriptase/RNA-dependent DNA
polymerase [Arabidopsis thaliana]
gi|332660185|gb|AEE85585.1| ribonuclease H-like protein
[Arabidopsis thaliana]
Length = 575
Score = 74.3 bits (181), Expect = 7e-11
Identities = 77/319 (24%), Positives = 126/319 (39%), Gaps = 8/319 (2%)
Frame = +3
Query: 3 QHFIWRCLNKAIPTRVHLSRRGVQLDTICAMCGLQEETMEHLFFHCPRAQKTWKLAPV-- 176
QHF+W+CL+ ++P L+ R + ++ C C +ET+ HL F C A+ TW ++ +
Sbjct: 267 QHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCKETVNHLLFKCTFARLTWAISSIPI 326
Query: 177 ----EWNNTSKENFTFKGWWQDLCSIKENSYAEDRIQLSVYLLWWLWKTRNLWIFQKCVT 344
EW ++ N W +L + N E QL +LLW LWK RN +F+
Sbjct: 327 PLGGEWADSIYVNLY---WVFNLGN--GNPQWEKASQLVPWLLWRLWKNRNELVFRGREF 381
Query: 345 NEKDLVDGAIWEWQEMLSINSSGHIGRNKQXXXXXXXXXXXXXXXXXXXXXCVAISAVIG 524
N ++++ A + +E + G Q A
Sbjct: 382 NAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCGRWRPPPHQWVKCN----TDATWN 437
Query: 525 DGCNNCYGGWIMNENMHNLKAWSTSRNDNLNSV-EAMLFGIRLIMISAFESGIKNVTICL 701
C GW++ +K L SV EA L +R ++S V
Sbjct: 438 RDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAMRWAVLSLSRFQYNYVIFES 497
Query: 702 EDENLIQRLNNRNTQEW-NMTPLIEDIFLLWYLFDACYFSISDRRWIANCNRLALLALDG 878
+ + LI+ LN N + W ++ P I+D+ L F F R R+A
Sbjct: 498 DSQVLIEILN--NDEIWPSLKPTIQDLQRLLSQFTEVKFVFIPREGNTLAERVA------ 549
Query: 879 NSDMNWLNQFPAWLTV*PS 935
+++LN P ++ PS
Sbjct: 550 RESLSFLNYDPKLYSIVPS 568
>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
gi|7267666|emb|CAB78094.1| RNA-directed DNA
polymerase-like protein [Arabidopsis thaliana]
Length = 1274
Score = 74.3 bits (181), Expect = 7e-11
Identities = 72/282 (25%), Positives = 119/282 (42%), Gaps = 9/282 (3%)
Frame = +3
Query: 3 QHFIWRCLNKAIPTRVHLSRRGVQLDTICAMCGLQEETMEHLFFHCPRAQKTWKLAPVEW 182
+HF+W+ + A+P LSRR ++ + C CG Q E+ HL CP A+K W+LAPV +
Sbjct: 984 KHFLWKAMKGALPVGEALSRRNIEAEVTCKRCG-QTESSLHLMLLCPYAKKVWELAPVLF 1042
Query: 183 NNTSKENFTFKGWWQD---LCSIKENSYAEDRIQLSVYLLWWLWKTRNLWIFQKCVTNEK 353
N + + + D + ++ L +LLW LWK RN IF +E+
Sbjct: 1043 NPSEATHSSVALLLVDAKRMVALPPTGLGS--APLYPWLLWHLWKARNRLIFDNHSCSEE 1100
Query: 354 DLVDGAIWE---WQE-MLSINSSGHIGRNKQXXXXXXXXXXXXXXXXXXXXXCVAISAVI 521
LV AI + W E L I+ I C +A
Sbjct: 1101 GLVLKAILDARAWMEAQLLIHHPSPIS------------DYPSPTPNLKVTSCFVDAAWT 1148
Query: 522 GDGCNNCYGGWIMNENMH-NLKAWSTSRNDNLNSVEAMLFGIRLIMISAFESGIKNVTIC 698
G C GW + + +K +S + +++ A + L ++ A +G++ + +
Sbjct: 1149 TSG--YCGMGWFLQDPYKVKIKENQSSSSFVGSALMAETLAVHLALVDALSTGVRQLNVF 1206
Query: 699 LEDENLIQRLNNRNTQEWNMTPLIEDIFLLWYLF-DACYFSI 821
+ + LI LN+ + + L+ DI L F C+F I
Sbjct: 1207 SDCKELISLLNSGKSIV-ELRGLLHDIRELSVSFTHLCFFFI 1247
>dbj|BAE79382.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 72.0 bits (175), Expect = 3e-10
Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 1/128 (0%)
Frame = +3
Query: 9 FIWRCLNKAIPTRVHLSRRGVQLDTICAMCGLQEETMEHLFFHCPRAQKTWKLAPVEWNN 188
F+W+ + + V RRG+ C +CG ++ET++HLF C A+ W A
Sbjct: 1052 FMWKIVKNGLMVNVERKRRGLADAASCPVCGEEDETLDHLFRRCLLAEACWDSAVPPLTF 1111
Query: 189 TSKENFTFKGWWQDLCSIKE-NSYAEDRIQLSVYLLWWLWKTRNLWIFQKCVTNEKDLVD 365
+ + W + CS ++ + Y+ + + Y+LW LWK RN +F +T D+++
Sbjct: 1112 QTSNHLHMHSWMKAACSSQQKDGYSTNWSLIFPYILWNLWKARNRLVFDNNITAPSDILN 1171
Query: 366 GAIWEWQE 389
+ E E
Sbjct: 1172 RSFMESSE 1179
>dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]
Length = 1898
Score = 71.6 bits (174), Expect = 4e-10
Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 1/128 (0%)
Frame = +3
Query: 9 FIWRCLNKAIPTRVHLSRRGVQLDTICAMCGLQEETMEHLFFHCPRAQKTWKLAPVEWNN 188
F+W+ + + V RRG+ C +CG ++ET++HLF C A+ W A
Sbjct: 1584 FMWKIVKNGLMVNVERKRRGLADAASCPVCGEEDETLDHLFRRCLLAEACWDSAVPPLTF 1643
Query: 189 TSKENFTFKGWWQDLCSIKE-NSYAEDRIQLSVYLLWWLWKTRNLWIFQKCVTNEKDLVD 365
+ + W + CS ++ + Y + + Y+LW LWK RN +F +T D+++
Sbjct: 1644 QTSNHLHMHSWMKAACSSQQKDGYGTNWSLIFPYILWNLWKARNRLVFDNNITAPSDILN 1703
Query: 366 GAIWEWQE 389
+ E E
Sbjct: 1704 RSFMESSE 1711
>dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 71.6 bits (174), Expect = 4e-10
Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 1/128 (0%)
Frame = +3
Query: 9 FIWRCLNKAIPTRVHLSRRGVQLDTICAMCGLQEETMEHLFFHCPRAQKTWKLAPVEWNN 188
F+W+ + + V RRG+ C +CG ++ET++HLF C A+ W A
Sbjct: 1052 FMWKIVKNGLMVNVERKRRGLADAASCPVCGEEDETLDHLFRRCLLAEACWDSAVPPLTF 1111
Query: 189 TSKENFTFKGWWQDLCSIKE-NSYAEDRIQLSVYLLWWLWKTRNLWIFQKCVTNEKDLVD 365
+ + W + CS ++ + Y + + Y+LW LWK RN +F +T D+++
Sbjct: 1112 QTSNHLHMHSWMKAACSSQQKDGYGTNWSLIFPYILWNLWKARNRLVFDNNITAPSDILN 1171
Query: 366 GAIWEWQE 389
+ E E
Sbjct: 1172 RSFMESSE 1179
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1524
Score = 71.2 bits (173), Expect = 6e-10
Identities = 41/142 (28%), Positives = 70/142 (49%), Gaps = 6/142 (4%)
Frame = +3
Query: 3 QHFIWRCLNKAIPTRVHLSRRGVQLDTICAMCGLQEETMEHLFFHCPRAQKTWKLAPVE- 179
+HF+WR L++A+ T L+ RG+++D IC C + E++ H F CP A W L+
Sbjct: 1212 KHFLWRALSQALATTERLTTRGMRIDPICPRCHRENESINHALFTCPFATMAWWLSDSSL 1271
Query: 180 -----WNNTSKENFTFKGWWQDLCSIKENSYAEDRIQLSVYLLWWLWKTRNLWIFQKCVT 344
+N +EN + L +++ + ++ L V+L+W +WK RN +F K
Sbjct: 1272 IRNQLMSNDFEENIS-----NILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVVFNKFRE 1326
Query: 345 NEKDLVDGAIWEWQEMLSINSS 410
+ V A E + L+ S
Sbjct: 1327 SPSKTVLSAKAETHDWLNATQS 1348
>emb|CAB75484.1| putative protein [Arabidopsis thaliana]
Length = 851
Score = 71.2 bits (173), Expect = 6e-10
Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Frame = +3
Query: 3 QHFIWRCLNKAIPTRVHLSRRGVQLDTICAMCGLQEETMEHLFFHCPRAQKTWKLAPVEW 182
+HF+WR L+KA+PT L+ RG+++D C C + E++ H F CP A W+L+
Sbjct: 677 KHFLWRILSKALPTTDRLTTRGMRIDPGCPRCRRENESINHALFTCPFATMAWRLSDTPL 736
Query: 183 NNTSKENFTFKGWWQDLCSIKENSYAEDRIQL-SVYLLWWLWKTRNLWIF 329
+S + + ++ + +N+ D +L +LLW +WK RN +F
Sbjct: 737 YRSSILSNNIEDNISNILLLLQNTTITDSQKLIPFWLLWRIWKARNNVVF 786
>ref|NP_187562.1| RNase H domain-containing protein [Arabidopsis thaliana]
gi|6682231|gb|AAF23283.1|AC016661_8 putative non-LTR
reverse transcriptase [Arabidopsis thaliana]
gi|332641254|gb|AEE74775.1| RNase H domain-containing
protein [Arabidopsis thaliana]
Length = 484
Score = 70.9 bits (172), Expect = 8e-10
Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 6/142 (4%)
Frame = +3
Query: 3 QHFIWRCLNKAIPTRVHLSRRGVQLDTICAMCGLQEETMEHLFFHCPRAQKTWKLAPVE- 179
+HF+WR L++A+ T L+ RG+++D C C + E++ H F CP A W+L+
Sbjct: 172 KHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRLSDSSL 231
Query: 180 -----WNNTSKENFTFKGWWQDLCSIKENSYAEDRIQLSVYLLWWLWKTRNLWIFQKCVT 344
+N +EN + L +++ + ++ L V+L+W +WK RN +F K
Sbjct: 232 IRNQLMSNDFEENIS-----NILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVVFNKFRE 286
Query: 345 NEKDLVDGAIWEWQEMLSINSS 410
+ V A E + L+ S
Sbjct: 287 SPSKTVLSAKAETHDWLNATQS 308
>gb|AFK38936.1| unknown [Medicago truncatula]
Length = 297
Score = 70.9 bits (172), Expect = 8e-10
Identities = 39/110 (35%), Positives = 54/110 (49%)
Frame = +3
Query: 12 IWRCLNKAIPTRVHLSRRGVQLDTICAMCGLQEETMEHLFFHCPRAQKTWKLAPVEWNNT 191
+WR IPTR +L RRGV LDT+C +C +E+ HLF CP + W +P+ +
Sbjct: 1 MWRLARNIIPTRCNLRRRGVVLDTVCPLCFDADESSNHLFMACPMTLQVWFASPLGFQPP 60
Query: 192 SKENFTFKGWWQDLCSIKENSYAEDRIQLSVYLLWWLWKTRNLWIFQKCV 341
+ + W Q S KE +QL LW +W RN IF + V
Sbjct: 61 PQTD--LNAWLQSWLSAKEPL----AVQLFCVCLWKIWFFRNQAIFNQVV 104
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1750
Score = 70.9 bits (172), Expect = 8e-10
Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 6/142 (4%)
Frame = +3
Query: 3 QHFIWRCLNKAIPTRVHLSRRGVQLDTICAMCGLQEETMEHLFFHCPRAQKTWKLAPVE- 179
+HF+WR L++A+ T L+ RG+++D C C + E++ H F CP A W+L+
Sbjct: 1438 KHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRLSDSSL 1497
Query: 180 -----WNNTSKENFTFKGWWQDLCSIKENSYAEDRIQLSVYLLWWLWKTRNLWIFQKCVT 344
+N +EN + L +++ + ++ L V+L+W +WK RN +F K
Sbjct: 1498 IRNQLMSNDFEENIS-----NILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVVFNKFRE 1552
Query: 345 NEKDLVDGAIWEWQEMLSINSS 410
+ V A E + L+ S
Sbjct: 1553 SPSKTVLSAKAETHDWLNATQS 1574
>ref|XP_006487438.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 335
Score = 70.5 bits (171), Expect = 1e-09
Identities = 68/309 (22%), Positives = 119/309 (38%), Gaps = 8/309 (2%)
Frame = +3
Query: 9 FIWRCLNKAIPTRVHLSRRGVQLDTICAMCGLQEETMEHLFFHCPRAQKTWKLAPVEWNN 188
F+W+ +PT +L +RG+ + C CG + E + H+ C A+K W+ +PV
Sbjct: 32 FVWKATKNLLPTAENLCKRGIVQEAHCKRCGNKVENILHVLVTCKAAKKVWQRSPVA--- 88
Query: 189 TSKENFTFKGWWQDLCSIKENSYAEDRIQLSVYLLWWLWKTRNLWIFQKCVTNEKDLVDG 368
+ + +L + + S + D +L + LLW +W RN ++F+ + V
Sbjct: 89 DAVHKIDSSNLFGELTKL-QRSLSNDDFELLLVLLWIIWYARNKFVFEGMKIDPGISVAK 147
Query: 369 A--------IWEWQEMLSINSSGHIGRNKQXXXXXXXXXXXXXXXXXXXXXCVAISAVIG 524
A ++ EML +S +NK C + AVI
Sbjct: 148 AEAIKEAYKRTQFPEMLVGKNSLRQEQNKWAPPPPRWVKINVDAAIDAKSKCSGLGAVIK 207
Query: 525 DGCNNCYGGWIMNENMHNLKAWSTSRNDNLNSVEAMLFGIRLIMISAFESGIKNVTICLE 704
D C+ + +K+ ++ + L EA +G L A E G++ V + +
Sbjct: 208 DPSGKCF--------VAAVKSVTSKGDVLLAEAEADEWGTYL----AKEEGMQAVILETD 255
Query: 705 DENLIQRLNNRNTQEWNMTPLIEDIFLLWYLFDACYFSISDRRWIANCNRLALLALDGNS 884
+ + +NN + +I DI L F R ++LA +AL
Sbjct: 256 SKATVDLINNNGNYMTEVHWIISDIQSLMSQFSHFVAKFIPRSCNTCAHKLAKIALGKTD 315
Query: 885 DMNWLNQFP 911
W FP
Sbjct: 316 SFVWKGNFP 324