BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia26_contig00028352
         (451 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD17398.1| putative non-LTR retroelement reverse transcripta...    67   3e-09
emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga...    61   1e-07
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam...    60   2e-07
gb|EMJ00254.1| hypothetical protein PRUPE_ppa018398mg, partial [...    59   5e-07
ref|XP_006279399.1| hypothetical protein CARUB_v10007977mg [Caps...    59   7e-07
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi...    59   9e-07
ref|XP_004301927.1| PREDICTED: putative ribonuclease H protein A...    58   1e-06
gb|AAF79804.1|AC020646_27 T32E20.19 [Arabidopsis thaliana]             57   2e-06
gb|AAB84340.1| putative non-LTR retroelement reverse transcripta...    57   3e-06
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1...    56   4e-06
ref|NP_178368.1| RNase H domain-containing protein [Arabidopsis ...    56   6e-06
gb|EMJ27757.1| hypothetical protein PRUPE_ppa024430mg [Prunus pe...    55   1e-05

>gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1225

 Score = 66.6 bits (161), Expect = 3e-09
 Identities = 33/113 (29%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
 Frame = -3

Query: 407  RGVDIDTICQVCGEEEETLEHILFFCNRAVNIWKLAPL-NWDGLVKEREYFADWCGKICC 231
            R +  + +C  CG EEE++ H+LF C  +  IW L+P+ + + +      F ++   +  
Sbjct: 956  RHIGTEKVCPRCGAEEESINHLLFLCPPSRQIWALSPIPSSEYIFPRNSLFYNFDFLLSR 1015

Query: 230  FKGDDVFEKRIQLTSYMLWWLWKTRNLWIFQKERKPDHHIVDCALEE---WKE 81
             K  D+ E  +++  ++LW++WK+RN +IF+   +    I+D A++E   WK+
Sbjct: 1016 GKEFDIAEDIMEIFPWILWYIWKSRNRFIFENVIESPQVILDFAIQEANVWKQ 1068


>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1369

 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 34/111 (30%), Positives = 55/111 (49%)
 Frame = -3

Query: 410  KRGVDIDTICQVCGEEEETLEHILFFCNRAVNIWKLAPLNWDGLVKEREYFADWCGKICC 231
            KRG++ID  C  CGE+EET EH+++ C+ +   W ++PL       E   F  W   +  
Sbjct: 1083 KRGMNIDGACPRCGEKEETTEHLIWGCDESSRAWYISPLRIHTGNIEAGSFRIWVESLLD 1142

Query: 230  FKGDDVFEKRIQLTSYMLWWLWKTRNLWIFQKERKPDHHIVDCALEEWKEF 78
               D  +     L   + W +W  RN W+F+K++     +V+ A+    EF
Sbjct: 1143 THKDTEW---WALFWMICWNIWLGRNKWVFEKKKLAFQEVVERAVRGVMEF 1190


>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
            42.57) [Arabidopsis thaliana]
          Length = 1662

 Score = 60.5 bits (145), Expect = 2e-07
 Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
 Frame = -3

Query: 407  RGVDIDTICQVCGEEEETLEHILFFCNRAVNIWKLAPLNW-DGLVKEREYFADWCGKICC 231
            RG+DID  C  C  EEET+ H+LF C  A +IW L+   W  G    ++   +    I  
Sbjct: 1392 RGMDIDPHCPRCPTEEETINHVLFTCPYAASIWGLSNFPWLPGHTFSQDTEENISFLINS 1451

Query: 230  FKGDDVFEKRIQLTSYMLWWLWKTRNLWIFQKERKPDHHIV---DCALEEWKEFLN 72
            F  + +  ++     +++W LWK RN  +F K  +    +V   +  + EW + +N
Sbjct: 1452 FSNNTLNTEQRLAPFWLIWRLWKARNNLVFNKFSESCSRVVTQTEAEVNEWLQSVN 1507


>gb|EMJ00254.1| hypothetical protein PRUPE_ppa018398mg, partial [Prunus persica]
          Length = 315

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 2/109 (1%)
 Frame = -3

Query: 386 ICQVCGEEEETLEHILFFCNRAVNIWKLAPLNWDGLVKEREYFADWCGKICCFKGDDVFE 207
           +C +CG EEET+EH+LF C     +  + PLN+   ++       W   +  F+G    E
Sbjct: 35  VCPICGVEEETIEHLLFLCPWTNAVRFVVPLNYIVDMRGFSSVDRWLKGVINFQGLSKRE 94

Query: 206 KRIQLT--SYMLWWLWKTRNLWIFQKERKPDHHIVDCALEEWKEFLNLK 66
               LT  S++ W +WKT   ++F+         +D A++  +EFL+ K
Sbjct: 95  VHFLLTNISFICWEIWKTGCNFVFKSSHIDPRLTIDRAIQNRREFLDAK 143


>ref|XP_006279399.1| hypothetical protein CARUB_v10007977mg [Capsella rubella]
           gi|482548097|gb|EOA12297.1| hypothetical protein
           CARUB_v10007977mg [Capsella rubella]
          Length = 417

 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
 Frame = -3

Query: 410 KRGVDIDTICQVCGEEEETLEHILFFCNRAVNIWKLA--PLNWDGLVKEREYFADWCGKI 237
           + G++ + +CQVC  EEET+ H+LF C  A  +W ++  P+  +G         ++C  I
Sbjct: 120 RHGINTNPLCQVCKVEEETISHVLFGCQLAQQVWSVSGLPIPANGFSSSTVENVEYCFMI 179

Query: 236 CCFKGDDVFEKRIQLTSYMLWWLWKTRNLWIFQKERKPDHHIV 108
                 +V  +  Q   ++LW +WK RN  +F  +R  D HI+
Sbjct: 180 --MGKSEVSLQSRQAIPWLLWEIWKARNGLVF-AQRVSDPHIL 219


>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
            (fragment)
          Length = 1365

 Score = 58.5 bits (140), Expect = 9e-07
 Identities = 32/112 (28%), Positives = 55/112 (49%)
 Frame = -3

Query: 407  RGVDIDTICQVCGEEEETLEHILFFCNRAVNIWKLAPLNWDGLVKEREYFADWCGKICCF 228
            RG+  D  C +C  E ET+ HILF C  A  +W +  L+  G       + +    I   
Sbjct: 1075 RGIRSDDGCLMCDTENETINHILFECPLARQVWAITHLSSAGSEFSNSVYTNMSRLIDLT 1134

Query: 227  KGDDVFEKRIQLTSYMLWWLWKTRNLWIFQKERKPDHHIVDCALEEWKEFLN 72
            + +D+      ++ ++LW+LWK RN  +F+ +      +VD A E + E+ +
Sbjct: 1135 QQNDLPHHLRFVSPWILWFLWKNRNALLFEGKGSITTTLVDKAYEAYHEWFS 1186


>ref|XP_004301927.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 968

 Score = 57.8 bits (138), Expect = 1e-06
 Identities = 39/113 (34%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
 Frame = -3

Query: 410 KRGVDIDTICQVCGEEEETLEHILFFCNRAVNIWKLAPLNWDGLVKEREY--FADWCGKI 237
           KR +   + C  CGE EET+ H L +C  A  +WK     W G+ K  +   FAD  G +
Sbjct: 673 KRNICSHSGCGRCGEGEETVVHSLCWCRVAKKVWKCT--YWRGVYKSWQISSFADLFG-L 729

Query: 236 CCFKGDDVFEKRIQLTSYMLWWLWKTRNLWIFQKERKPDHHIVDCALEEWKEF 78
              +G+    K  +L + + WWLWK RN     K+      IV+  LE  +EF
Sbjct: 730 VAMEGN---IKNTELFALICWWLWKDRNEVFHGKKGLEPRQIVEKCLEWQREF 779


>gb|AAF79804.1|AC020646_27 T32E20.19 [Arabidopsis thaliana]
          Length = 957

 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
 Frame = -3

Query: 410  KRGVDIDTICQVCGEEEETLEHILFFCNRAVNIWKLAPLNW-DGLVKEREYFADWCGKIC 234
            K+G++ID IC  C  EEE++ H+LF    A   WKLA L++  G     +   +    I 
Sbjct: 772  KKGMNIDPICSRCSLEEESICHVLFNYPYATTTWKLAKLSYLSGHTFSNDVEENISVLID 831

Query: 233  CFKGDDVFEKRIQLTSYMLWWLWKTRNLWIFQKERKPDHHIV---DCALEEW 87
                +++ E++  L  ++++ +WK RN ++F K RK    +V   +  + EW
Sbjct: 832  SISNNNLTEQQKLLPFWLIFRIWKARNNYVFNKFRKCSSKVVSQSEVDVNEW 883


>gb|AAB84340.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1094

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 36/111 (32%), Positives = 53/111 (47%)
 Frame = -3

Query: 407  RGVDIDTICQVCGEEEETLEHILFFCNRAVNIWKLAPLNWDGLVKEREYFADWCGKICCF 228
            RGV I+  C +C E+ ETL HILF C  A  +W L P+           F +    I   
Sbjct: 805  RGVLIEDGCSMCPEKNETLNHILFQCPLARQVWALTPMQSPNHGFGDSIFTNVNHVIGNC 864

Query: 227  KGDDVFEKRIQLTSYMLWWLWKTRNLWIFQKERKPDHHIVDCALEEWKEFL 75
               ++      ++ +++W LWK RN  +F+        IV  ALE+ KE+L
Sbjct: 865  HNTELSPHLRYVSPWIIWILWKNRNKRLFEGIGSVSLSIVGKALEDCKEWL 915


>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) - Arabidopsis
            thaliana retrotransposon Ta11-1 gi|976278|gb|AAA75254.1|
            reverse transcriptase [Arabidopsis thaliana]
          Length = 1333

 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
 Frame = -3

Query: 410  KRGVDIDTICQVCGEEEETLEHILFFCNRAVNIWKLA--PLNWDGLVKEREYFADWCGKI 237
            +RG+ ID  CQVCGEE E++ H+LF C+ A  +W L+  P +  G  +    FA+    +
Sbjct: 1077 RRGMPIDPRCQVCGEEGESINHVLFTCSLARQVWALSGVPTSQFGF-QNSSIFAN-IQYL 1134

Query: 236  CCFKGDDVFEKRIQLT-SYMLWWLWKTRNLWIFQ 138
               KG  +  ++I+ +  ++LW LWK R+   F+
Sbjct: 1135 LELKGKGLIPEQIKKSWPWVLWRLWKNRDKLFFE 1168


>ref|NP_178368.1| RNase H domain-containing protein [Arabidopsis thaliana]
           gi|3184275|gb|AAC18922.1| putative reverse transcriptase
           [Arabidopsis thaliana] gi|330250513|gb|AEC05607.1| RNase
           H domain-containing protein [Arabidopsis thaliana]
          Length = 365

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
 Frame = -3

Query: 407 RGVDIDTICQVCGEEEETLEHILFFCNRAVNIWKLAPLNWDGLVKEREYFADWCGKICCF 228
           R +D D ICQ C  EEET+ HI+F C    ++W+ A +           F D   ++   
Sbjct: 67  RNIDADPICQRCCIEEETIHHIMFNCPYTQSVWRSANIIIGNQWGPPSSFEDNLNRLIQL 126

Query: 227 KGDDVFEKRIQ-LTSYMLWWLWKTRNLWIFQKERKPDHHIVDCALEEWKEFLN 72
                     + L  +++W LWK+RN+++FQ++ +   +     +++  E+LN
Sbjct: 127 SKTQTTNSLDRFLPFWIMWRLWKSRNVFLFQQKCQSPDYEARKGIQDATEWLN 179


>gb|EMJ27757.1| hypothetical protein PRUPE_ppa024430mg [Prunus persica]
          Length = 264

 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
 Frame = -3

Query: 362 EETLEHILFFCNRAVNIWKLAPLNWDGLVKEREYFADWCGKICCFKGDDVFEKRIQLT-- 189
           +ET+EH+LF C     +W  APLN+   ++       W   +  F+G    E +  LT  
Sbjct: 5   KETIEHLLFLCPWTNVVWFGAPLNYKVDMRGFSSVDRWLEGVINFQGVSKREVQFLLTNI 64

Query: 188 SYMLWWLWKTRNLWIFQKERKPDHHIVDCALEEWKEFLNLK 66
           S++ W +WKTR  +IF+         +D A++  +EFL+ K
Sbjct: 65  SFICWEIWKTRCNFIFKSNHIDPRLTIDRAMQNCREFLDAK 105